Query 023521
Match_columns 281
No_of_seqs 216 out of 1350
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 04:40:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023521.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023521hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1718 Dual specificity phosp 100.0 6E-33 1.3E-37 232.6 13.8 141 47-188 16-162 (198)
2 smart00195 DSPc Dual specifici 100.0 1.8E-31 3.9E-36 219.4 16.2 132 48-180 1-138 (138)
3 KOG1717 Dual specificity phosp 100.0 3E-31 6.4E-36 236.3 14.9 143 42-185 166-316 (343)
4 KOG1716 Dual specificity phosp 100.0 7.6E-30 1.6E-34 235.1 21.8 181 6-188 25-223 (285)
5 PF00782 DSPc: Dual specificit 100.0 5E-30 1.1E-34 209.2 13.3 124 56-180 1-133 (133)
6 cd00127 DSPc Dual specificity 100.0 4.2E-28 9.2E-33 198.5 15.4 130 48-178 2-139 (139)
7 PRK12361 hypothetical protein; 99.9 1.3E-24 2.8E-29 216.5 17.1 136 47-183 94-239 (547)
8 PTZ00242 protein tyrosine phos 99.9 1.6E-20 3.5E-25 160.4 16.3 118 66-184 32-161 (166)
9 PTZ00393 protein tyrosine phos 99.8 3.6E-20 7.9E-25 165.2 14.1 118 66-185 108-233 (241)
10 KOG1719 Dual specificity phosp 99.8 4.4E-20 9.6E-25 153.3 12.7 132 55-186 31-175 (183)
11 KOG1720 Protein tyrosine phosp 99.8 7.8E-19 1.7E-23 152.5 14.2 160 9-179 35-206 (225)
12 COG2453 CDC14 Predicted protei 99.6 3.7E-15 8.1E-20 128.8 12.1 89 89-177 69-163 (180)
13 PF03162 Y_phosphatase2: Tyros 99.4 3.1E-12 6.7E-17 109.2 10.0 133 49-184 8-153 (164)
14 KOG2836 Protein tyrosine phosp 99.3 2.1E-11 4.6E-16 99.6 12.2 114 67-182 34-157 (173)
15 TIGR01244 conserved hypothetic 99.3 5.4E-11 1.2E-15 98.3 12.8 113 50-165 4-129 (135)
16 smart00012 PTPc_DSPc Protein t 99.2 9.1E-11 2E-15 90.3 9.4 84 93-176 5-101 (105)
17 smart00404 PTPc_motif Protein 99.2 9.1E-11 2E-15 90.3 9.4 84 93-176 5-101 (105)
18 PF05706 CDKN3: Cyclin-depende 99.2 9.1E-11 2E-15 99.7 8.3 101 54-154 41-168 (168)
19 cd00047 PTPc Protein tyrosine 99.0 4.2E-10 9.1E-15 100.0 7.0 86 91-176 131-227 (231)
20 smart00194 PTPc Protein tyrosi 99.0 2.7E-09 5.9E-14 96.5 9.2 72 105-176 174-254 (258)
21 PF04273 DUF442: Putative phos 98.9 1.3E-08 2.9E-13 81.3 9.1 88 50-139 4-104 (110)
22 PLN02727 NAD kinase 98.8 2.9E-08 6.3E-13 102.6 10.1 98 55-152 262-373 (986)
23 PRK15375 pathogenicity island 98.7 6.3E-08 1.4E-12 94.8 10.3 61 123-183 469-531 (535)
24 PF00102 Y_phosphatase: Protei 98.6 2.3E-07 5E-12 81.5 8.5 82 95-176 140-231 (235)
25 KOG2283 Clathrin coat dissocia 98.6 1.4E-07 3E-12 91.8 7.2 136 43-181 23-174 (434)
26 PF13350 Y_phosphatase3: Tyros 98.5 6.5E-07 1.4E-11 75.9 8.9 105 50-155 15-158 (164)
27 PHA02742 protein tyrosine phos 98.4 1.1E-06 2.4E-11 82.0 10.0 55 120-174 229-288 (303)
28 PHA02740 protein tyrosine phos 98.4 1.6E-06 3.5E-11 80.8 10.1 83 93-175 181-281 (298)
29 PHA02746 protein tyrosine phos 98.4 1E-06 2.2E-11 83.0 8.8 56 121-176 248-308 (323)
30 COG5350 Predicted protein tyro 98.4 2.1E-06 4.6E-11 71.8 9.0 104 68-172 26-146 (172)
31 KOG2386 mRNA capping enzyme, g 98.3 1.9E-06 4.1E-11 82.4 8.6 173 17-193 6-196 (393)
32 PHA02747 protein tyrosine phos 98.3 2.4E-06 5.3E-11 80.0 9.0 54 121-174 230-288 (312)
33 COG3453 Uncharacterized protei 98.3 9.3E-06 2E-10 65.4 10.3 107 53-161 7-126 (130)
34 PHA02738 hypothetical protein; 98.2 9E-06 2E-10 76.5 9.2 55 121-175 228-287 (320)
35 KOG1572 Predicted protein tyro 98.0 3.1E-05 6.7E-10 69.2 9.4 106 49-158 61-185 (249)
36 COG2365 Protein tyrosine/serin 98.0 1.5E-05 3.4E-10 72.3 7.4 120 49-168 48-184 (249)
37 KOG0790 Protein tyrosine phosp 98.0 2.3E-05 5.1E-10 75.5 8.4 108 68-175 374-514 (600)
38 PF04179 Init_tRNA_PT: Initiat 97.9 0.00022 4.8E-09 70.0 13.7 126 52-177 292-449 (451)
39 COG5599 PTP2 Protein tyrosine 97.8 3.1E-05 6.6E-10 70.4 5.3 90 93-182 188-294 (302)
40 KOG0792 Protein tyrosine phosp 97.7 7.7E-05 1.7E-09 78.2 8.0 72 105-176 1044-1124(1144)
41 PF14566 PTPlike_phytase: Inos 97.7 6.4E-05 1.4E-09 63.1 5.1 54 90-144 90-148 (149)
42 KOG0789 Protein tyrosine phosp 97.5 0.00037 8.1E-09 66.8 8.1 85 93-177 267-362 (415)
43 PF14671 DSPn: Dual specificit 97.4 0.00091 2E-08 55.8 8.3 101 49-162 1-112 (141)
44 KOG0791 Protein tyrosine phosp 96.9 0.0056 1.2E-07 58.1 9.3 95 90-184 252-357 (374)
45 KOG4228 Protein tyrosine phosp 96.4 0.0086 1.9E-07 63.6 7.5 79 107-185 713-802 (1087)
46 KOG0793 Protein tyrosine phosp 95.8 0.028 6.1E-07 57.4 7.3 67 108-174 911-987 (1004)
47 KOG4228 Protein tyrosine phosp 93.5 0.23 5.1E-06 53.2 7.7 57 120-176 1018-1079(1087)
48 KOG4471 Phosphatidylinositol 3 92.5 0.2 4.4E-06 50.5 5.1 37 107-143 361-398 (717)
49 cd01518 RHOD_YceA Member of th 90.7 1.1 2.3E-05 34.2 6.6 29 118-149 59-87 (101)
50 cd00729 rubredoxin_SM Rubredox 87.6 0.36 7.8E-06 30.3 1.5 23 9-31 4-27 (34)
51 PF06602 Myotub-related: Myotu 87.0 1.3 2.7E-05 42.4 5.6 26 114-139 225-250 (353)
52 cd01533 4RHOD_Repeat_2 Member 86.2 2.4 5.3E-05 32.7 6.0 64 76-148 27-91 (109)
53 cd00350 rubredoxin_like Rubred 83.2 0.8 1.7E-05 28.4 1.6 23 9-31 3-26 (33)
54 COG0607 PspE Rhodanese-related 81.2 3.5 7.7E-05 31.2 5.0 29 117-148 58-86 (110)
55 KOG1089 Myotubularin-related p 79.2 2.8 6E-05 42.5 4.6 31 108-138 331-362 (573)
56 cd01532 4RHOD_Repeat_1 Member 77.1 7.2 0.00016 29.2 5.4 29 119-148 49-77 (92)
57 cd01528 RHOD_2 Member of the R 75.8 7.8 0.00017 29.3 5.4 28 119-149 57-84 (101)
58 PLN02160 thiosulfate sulfurtra 74.0 5.8 0.00013 32.4 4.5 30 117-149 78-107 (136)
59 cd01522 RHOD_1 Member of the R 71.4 19 0.00042 28.2 6.9 29 118-149 62-90 (117)
60 PF03604 DNA_RNApol_7kD: DNA d 67.1 3.7 8.1E-05 25.5 1.4 24 10-33 3-28 (32)
61 cd01448 TST_Repeat_1 Thiosulfa 66.4 11 0.00025 29.4 4.5 30 118-149 77-106 (122)
62 PRK05320 rhodanese superfamily 65.3 14 0.00029 33.8 5.4 28 119-149 174-201 (257)
63 PRK10287 thiosulfate:cyanide s 65.0 13 0.00028 29.1 4.5 27 119-148 59-85 (104)
64 cd01523 RHOD_Lact_B Member of 64.1 9.7 0.00021 28.7 3.6 29 118-149 59-87 (100)
65 PF03861 ANTAR: ANTAR domain; 63.7 13 0.00027 25.6 3.8 26 135-160 15-40 (56)
66 TIGR03865 PQQ_CXXCW PQQ-depend 63.6 9.9 0.00021 32.1 3.9 30 118-149 114-143 (162)
67 PF04364 DNA_pol3_chi: DNA pol 63.0 14 0.0003 30.3 4.6 24 106-129 15-38 (137)
68 cd01526 RHOD_ThiF Member of th 62.8 25 0.00054 27.7 5.9 28 118-148 70-97 (122)
69 PF09419 PGP_phosphatase: Mito 59.5 29 0.00062 29.8 6.0 69 47-129 13-86 (168)
70 COG2927 HolC DNA polymerase II 58.6 12 0.00026 31.4 3.4 22 108-129 17-38 (144)
71 PRK01415 hypothetical protein; 58.4 20 0.00044 32.6 5.2 29 118-149 169-197 (247)
72 PRK00162 glpE thiosulfate sulf 58.0 30 0.00065 26.4 5.5 64 76-149 21-84 (108)
73 KOG4080 Mitochondrial ribosoma 57.9 3.3 7.1E-05 35.4 -0.1 20 7-28 93-112 (176)
74 smart00400 ZnF_CHCC zinc finge 57.5 13 0.00027 25.5 2.9 32 124-157 23-54 (55)
75 PRK06646 DNA polymerase III su 57.0 25 0.00054 29.7 5.1 30 101-130 10-39 (154)
76 PF13248 zf-ribbon_3: zinc-rib 56.5 7.5 0.00016 22.6 1.4 24 8-32 3-26 (26)
77 COG2179 Predicted hydrolase of 55.3 46 0.001 28.7 6.5 59 65-135 18-77 (175)
78 PF13344 Hydrolase_6: Haloacid 55.3 85 0.0018 24.1 7.6 56 104-161 14-78 (101)
79 cd01520 RHOD_YbbB Member of th 54.9 27 0.00058 27.8 4.9 31 117-149 83-113 (128)
80 PRK05728 DNA polymerase III su 54.7 28 0.00061 28.7 5.0 27 103-129 12-38 (142)
81 cd01534 4RHOD_Repeat_3 Member 54.3 31 0.00068 25.6 4.9 28 119-149 55-82 (95)
82 cd01444 GlpE_ST GlpE sulfurtra 52.9 35 0.00075 25.0 4.9 28 118-148 54-81 (96)
83 PF12238 MSA-2c: Merozoite sur 52.3 1.1E+02 0.0024 27.1 8.6 15 170-184 124-138 (205)
84 smart00659 RPOLCX RNA polymera 51.7 7.4 0.00016 25.8 0.9 27 9-35 4-32 (44)
85 PF08271 TF_Zn_Ribbon: TFIIB z 51.6 6.4 0.00014 25.7 0.6 28 9-36 2-33 (43)
86 TIGR02981 phageshock_pspE phag 51.6 36 0.00078 26.3 4.9 27 119-148 57-83 (101)
87 PF00581 Rhodanese: Rhodanese- 51.5 31 0.00068 25.7 4.6 34 115-149 62-98 (113)
88 cd01443 Cdc25_Acr2p Cdc25 enzy 50.4 50 0.0011 25.4 5.7 18 120-137 66-83 (113)
89 TIGR00853 pts-lac PTS system, 50.2 54 0.0012 25.1 5.7 61 120-183 3-73 (95)
90 PF14746 WASH-7_C: WASH comple 49.7 13 0.00029 32.0 2.3 63 95-161 49-112 (170)
91 PRK10886 DnaA initiator-associ 48.6 45 0.00097 29.2 5.6 37 104-143 25-61 (196)
92 PF01807 zf-CHC2: CHC2 zinc fi 47.4 23 0.00049 27.3 3.2 35 124-160 54-88 (97)
93 PF02673 BacA: Bacitracin resi 47.3 19 0.00041 33.0 3.2 27 128-156 159-185 (259)
94 cd01519 RHOD_HSP67B2 Member of 45.0 32 0.00068 25.9 3.7 28 119-149 65-92 (106)
95 PRK00142 putative rhodanese-re 44.8 33 0.00072 32.2 4.4 44 119-177 170-213 (314)
96 cd01529 4RHOD_Repeats Member o 44.4 31 0.00067 25.7 3.5 29 118-149 54-82 (96)
97 cd01447 Polysulfide_ST Polysul 43.9 28 0.00061 25.9 3.2 28 118-148 59-86 (103)
98 PRK12554 undecaprenyl pyrophos 43.7 21 0.00046 33.0 2.9 26 129-156 166-191 (276)
99 PF14206 Cys_rich_CPCC: Cystei 43.3 13 0.00029 27.8 1.2 22 8-29 2-27 (78)
100 TIGR00753 undec_PP_bacA undeca 43.1 22 0.00048 32.5 2.9 26 129-156 160-185 (255)
101 COG2260 Predicted Zn-ribbon RN 42.4 21 0.00045 25.3 2.0 24 9-35 7-30 (59)
102 PRK00281 undecaprenyl pyrophos 41.3 25 0.00054 32.4 2.9 26 129-156 164-189 (268)
103 PRK13130 H/ACA RNA-protein com 41.1 25 0.00054 24.7 2.2 27 6-35 4-30 (56)
104 cd01531 Acr2p Eukaryotic arsen 40.2 86 0.0019 24.0 5.6 20 119-138 61-80 (113)
105 PF04263 TPK_catalytic: Thiami 39.7 86 0.0019 25.3 5.6 63 50-134 34-98 (123)
106 cd04445 DEP_PLEK1 DEP (Disheve 39.6 34 0.00074 26.8 3.0 36 118-158 22-58 (99)
107 PRK13938 phosphoheptose isomer 39.4 76 0.0016 27.7 5.6 39 103-144 28-66 (196)
108 PRK05772 translation initiatio 38.8 50 0.0011 31.8 4.7 13 118-130 165-177 (363)
109 COG3707 AmiR Response regulato 38.4 31 0.00068 30.3 2.9 23 138-160 150-172 (194)
110 COG0279 GmhA Phosphoheptose is 38.1 50 0.0011 28.5 4.0 30 104-136 25-54 (176)
111 PF13580 SIS_2: SIS domain; PD 37.9 84 0.0018 25.4 5.4 33 103-138 18-50 (138)
112 TIGR01460 HAD-SF-IIA Haloacid 37.4 1.5E+02 0.0033 26.1 7.4 71 105-176 15-98 (236)
113 PF12172 DUF35_N: Rubredoxin-l 37.3 15 0.00032 23.0 0.5 21 8-29 12-32 (37)
114 PF01904 DUF72: Protein of unk 37.2 2.6E+02 0.0057 24.7 8.9 64 66-129 134-213 (230)
115 KOG2017 Molybdopterin synthase 37.1 2.6E+02 0.0056 27.2 8.9 45 119-181 376-420 (427)
116 TIGR00686 phnA alkylphosphonat 36.8 21 0.00046 28.4 1.5 29 8-36 3-33 (109)
117 KOG3507 DNA-directed RNA polym 35.8 13 0.00028 26.4 0.2 24 10-33 23-48 (62)
118 PRK06036 translation initiatio 35.5 62 0.0014 30.9 4.7 17 118-134 146-162 (339)
119 PF11023 DUF2614: Protein of u 35.4 17 0.00036 29.2 0.7 29 8-36 70-99 (114)
120 PRK11449 putative deoxyribonuc 35.2 58 0.0013 29.5 4.3 55 105-159 112-172 (258)
121 cd05567 PTS_IIB_mannitol PTS_I 34.3 43 0.00093 24.9 2.8 14 121-134 1-14 (87)
122 PF10302 DUF2407: DUF2407 ubiq 34.2 22 0.00047 27.7 1.2 10 121-130 86-95 (97)
123 COG1660 Predicted P-loop-conta 33.8 70 0.0015 29.7 4.5 22 117-138 237-261 (286)
124 cd01525 RHOD_Kc Member of the 33.8 64 0.0014 24.1 3.8 27 120-149 65-91 (105)
125 COG0794 GutQ Predicted sugar p 33.8 92 0.002 27.6 5.2 36 105-146 27-62 (202)
126 cd05006 SIS_GmhA Phosphoheptos 33.3 1.1E+02 0.0023 25.7 5.5 33 103-138 16-48 (177)
127 PRK05600 thiamine biosynthesis 33.2 50 0.0011 31.7 3.8 24 122-148 334-357 (370)
128 COG0333 RpmF Ribosomal protein 33.0 22 0.00048 25.0 1.0 22 8-31 28-49 (57)
129 TIGR00512 salvage_mtnA S-methy 32.9 80 0.0017 30.1 5.0 13 118-130 141-157 (331)
130 PF03853 YjeF_N: YjeF-related 31.7 77 0.0017 26.7 4.3 67 109-180 12-80 (169)
131 PRK00414 gmhA phosphoheptose i 31.6 85 0.0019 27.1 4.6 32 103-137 27-58 (192)
132 cd01521 RHOD_PspE2 Member of t 31.5 83 0.0018 24.0 4.2 30 118-149 62-92 (110)
133 PF02571 CbiJ: Precorrin-6x re 31.2 65 0.0014 29.2 4.0 69 55-125 46-135 (249)
134 TIGR02605 CxxC_CxxC_SSSS putat 30.7 24 0.00051 23.6 0.8 24 7-30 5-34 (52)
135 COG0369 CysJ Sulfite reductase 30.3 3.5E+02 0.0076 27.9 9.4 58 105-162 519-578 (587)
136 PRK09629 bifunctional thiosulf 30.0 67 0.0015 33.1 4.3 29 118-149 221-249 (610)
137 PRK10220 hypothetical protein; 29.8 37 0.00081 27.1 1.8 29 8-36 4-34 (111)
138 PLN00206 DEAD-box ATP-dependen 28.9 1.1E+02 0.0023 30.6 5.5 60 119-181 157-219 (518)
139 KOG1158 NADP/FAD dependent oxi 28.7 2.1E+02 0.0046 29.8 7.5 55 108-162 579-636 (645)
140 PRK04338 N(2),N(2)-dimethylgua 28.4 46 0.00099 32.2 2.6 42 9-71 246-289 (382)
141 PRK08762 molybdopterin biosynt 27.9 1.1E+02 0.0024 29.3 5.1 29 118-149 55-83 (376)
142 COG4738 Predicted transcriptio 27.8 42 0.00091 27.1 1.8 32 129-161 23-54 (124)
143 PF13378 MR_MLE_C: Enolase C-t 27.8 73 0.0016 24.4 3.2 24 105-128 31-54 (111)
144 KOG1004 Exosomal 3'-5' exoribo 27.8 1.2E+02 0.0027 27.1 4.9 40 119-160 184-223 (230)
145 smart00450 RHOD Rhodanese Homo 27.6 1.1E+02 0.0023 21.8 4.0 29 118-149 54-82 (100)
146 cd04765 HTH_MlrA-like_sg2 Heli 27.3 2E+02 0.0044 22.0 5.6 41 142-182 53-93 (99)
147 PF13147 Amidohydro_4: Amidohy 27.2 2.4E+02 0.0051 24.3 6.8 54 106-159 222-280 (304)
148 cd00687 Terpene_cyclase_nonpla 26.9 1.2E+02 0.0026 27.6 5.0 23 138-160 231-253 (303)
149 PF03668 ATP_bind_2: P-loop AT 26.8 1.1E+02 0.0023 28.6 4.6 17 122-138 244-260 (284)
150 PRK07411 hypothetical protein; 26.4 76 0.0016 30.7 3.7 28 119-149 341-368 (390)
151 PRK05720 mtnA methylthioribose 26.3 1.3E+02 0.0028 28.8 5.1 16 118-133 145-160 (344)
152 COG1968 BacA Undecaprenyl pyro 26.0 66 0.0014 29.8 3.0 26 129-156 165-190 (270)
153 PLN02599 dihydroorotase 25.8 4.9E+02 0.011 24.9 9.1 57 106-162 135-208 (364)
154 cd01527 RHOD_YgaP Member of th 25.5 1.1E+02 0.0024 22.6 3.8 29 117-148 51-79 (99)
155 PRK03824 hypA hydrogenase nick 25.1 41 0.0009 27.6 1.4 14 7-20 70-83 (135)
156 PRK09590 celB cellobiose phosp 25.0 64 0.0014 25.3 2.4 61 121-183 2-73 (104)
157 PRK13352 thiamine biosynthesis 24.7 2E+02 0.0044 28.3 6.2 110 45-157 57-211 (431)
158 PF00128 Alpha-amylase: Alpha 24.6 1.9E+02 0.0042 25.4 5.9 66 65-131 8-81 (316)
159 cd00158 RHOD Rhodanese Homolog 24.5 1.3E+02 0.0027 21.2 3.8 27 118-147 48-74 (89)
160 COG5188 PRP9 Splicing factor 3 24.4 28 0.00061 33.4 0.3 16 5-20 372-387 (470)
161 cd01720 Sm_D2 The eukaryotic S 24.3 98 0.0021 23.5 3.3 27 110-136 4-30 (87)
162 PF12921 ATP13: Mitochondrial 24.3 2.2E+02 0.0047 23.0 5.5 34 150-184 71-104 (126)
163 PRK11784 tRNA 2-selenouridine 24.2 1.7E+02 0.0037 27.9 5.7 29 119-149 87-115 (345)
164 PRK05569 flavodoxin; Provision 24.1 1.3E+02 0.0029 23.9 4.2 69 108-182 68-140 (141)
165 cd01294 DHOase Dihydroorotase 23.8 3.3E+02 0.0071 25.3 7.4 55 107-161 113-183 (335)
166 PF02302 PTS_IIB: PTS system, 23.7 66 0.0014 23.5 2.2 13 122-134 1-13 (90)
167 cd00730 rubredoxin Rubredoxin; 23.6 50 0.0011 22.5 1.3 15 9-23 3-17 (50)
168 PF13445 zf-RING_UBOX: RING-ty 23.2 27 0.00059 23.0 -0.0 27 10-36 1-27 (43)
169 KOG1530 Rhodanese-related sulf 23.1 1.1E+02 0.0023 25.5 3.4 59 63-136 43-104 (136)
170 PRK10310 PTS system galactitol 23.0 85 0.0019 23.9 2.7 16 121-136 3-18 (94)
171 smart00488 DEXDc2 DEAD-like he 22.8 1.9E+02 0.0042 26.6 5.6 36 108-143 15-50 (289)
172 smart00489 DEXDc3 DEAD-like he 22.8 1.9E+02 0.0042 26.6 5.6 36 108-143 15-50 (289)
173 COG1054 Predicted sulfurtransf 22.7 2.3E+02 0.005 26.7 5.9 71 57-131 110-183 (308)
174 PF10096 DUF2334: Uncharacteri 22.4 2.4E+02 0.0051 25.3 5.9 58 68-132 23-80 (243)
175 TIGR00190 thiC thiamine biosyn 22.2 2.4E+02 0.0053 27.7 6.2 103 55-157 64-208 (423)
176 TIGR03167 tRNA_sel_U_synt tRNA 22.2 1.7E+02 0.0038 27.4 5.2 28 120-149 74-101 (311)
177 PRK12286 rpmF 50S ribosomal pr 21.9 43 0.00094 23.5 0.8 21 8-30 28-48 (57)
178 PRK05416 glmZ(sRNA)-inactivati 21.7 1.5E+02 0.0032 27.6 4.5 34 106-139 224-264 (288)
179 PF08353 DUF1727: Domain of un 21.4 2.1E+02 0.0046 22.7 4.8 76 41-128 31-109 (113)
180 KOG0225 Pyruvate dehydrogenase 21.3 4.1E+02 0.0089 25.7 7.3 68 97-177 253-327 (394)
181 cd01449 TST_Repeat_2 Thiosulfa 21.3 1.2E+02 0.0027 23.0 3.5 28 119-149 77-104 (118)
182 TIGR02094 more_P_ylases alpha- 21.2 89 0.0019 32.2 3.2 36 121-159 161-199 (601)
183 PLN02723 3-mercaptopyruvate su 21.0 99 0.0021 28.9 3.3 28 118-148 267-294 (320)
184 KOG3153 Thiamine pyrophosphoki 20.9 2.4E+02 0.0052 25.6 5.4 36 95-130 97-136 (250)
185 TIGR03573 WbuX N-acetyl sugar 20.9 1.7E+02 0.0037 27.6 4.9 32 127-159 283-314 (343)
186 TIGR00615 recR recombination p 20.7 53 0.0011 28.9 1.3 26 4-32 50-75 (195)
187 cd01530 Cdc25 Cdc25 phosphatas 20.6 1.1E+02 0.0024 24.1 3.1 25 118-144 66-91 (121)
188 PF14420 Clr5: Clr5 domain 20.6 2.8E+02 0.006 18.8 4.7 33 145-177 18-50 (54)
189 KOG2675 Adenylate cyclase-asso 20.5 4.5E+02 0.0097 26.2 7.6 28 151-185 183-210 (480)
190 TIGR00197 yjeF_nterm yjeF N-te 20.3 2E+02 0.0044 25.0 4.9 40 110-149 35-74 (205)
191 PRK05568 flavodoxin; Provision 20.2 1.7E+02 0.0037 23.2 4.1 68 109-181 69-139 (142)
192 PRK10499 PTS system N,N'-diace 20.1 1.2E+02 0.0027 23.6 3.2 62 120-181 3-71 (106)
193 COG0182 Predicted translation 20.1 1.3E+02 0.0028 28.7 3.7 57 118-174 148-223 (346)
194 PF01783 Ribosomal_L32p: Ribos 20.0 63 0.0014 22.4 1.3 21 8-30 27-47 (56)
No 1
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=100.00 E-value=6e-33 Score=232.58 Aligned_cols=141 Identities=30% Similarity=0.431 Sum_probs=132.9
Q ss_pred CCceEeCCcEEEcCccccCCHHHHHhCCCcEEEEcCCCCccccCCCceEEeccCCC------hhhHHHHHHHHHHHHHcC
Q 023521 47 FPSEILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQNLYKNSFTYHCLEDDK------ILQFDDAIQFLEQCERDK 120 (281)
Q Consensus 47 ~p~eI~p~~LyLGs~~~a~~~~~L~~~gIt~IInl~~~~~~~~~~~~~y~~vp~~~------~~~f~~a~~fI~~~~~~g 120 (281)
..+||.+ .|||++-..|.+..+|++++|++|||++.+.++....++.|..++.+| .++|+.+.+.|+....+|
T Consensus 16 ~~SqIt~-sLfl~~GvaA~~k~~l~~~~It~IiNat~E~pn~~l~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~~~g 94 (198)
T KOG1718|consen 16 GMSQITP-SLFLSNGVAANDKLLLKKRKITCIINATTEVPNTSLPDIQYMKVPLEDTPQARLYDHFDPVADKIHSVIMRG 94 (198)
T ss_pred chhhcCc-ceeEeccccccCHHHHHhcCceEEEEcccCCCCccCCCceeEEEEcccCCcchhhhhhhHHHHHHHHHHhcC
Confidence 4589999 999998888999999999999999999999999888999999998765 368999999999999999
Q ss_pred CeEEEEeCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHcCCCCCC
Q 023521 121 ACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKIFGSVDGS 188 (281)
Q Consensus 121 ~~VLVHC~~G~sRS~tvv~AYLm~~~g~sl~~A~~~Vr~~RP~i~pn~~f~~qL~~~E~~L~~~~~~~ 188 (281)
|++||||.+|+|||+++++||||++.+|+|.||+.|||.+||.|.||-+||+||..||++|+++.++.
T Consensus 95 G~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~qL~g~~sV~ 162 (198)
T KOG1718|consen 95 GKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQLFGNASVR 162 (198)
T ss_pred CcEEEEEccccchhHHHHHHHHHHHccchHHHHHHHHHhhCceeCCCccHHHHHHHHHHHhcCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999998654
No 2
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.98 E-value=1.8e-31 Score=219.42 Aligned_cols=132 Identities=44% Similarity=0.680 Sum_probs=122.1
Q ss_pred CceEeCCcEEEcCccccCCHHHHHhCCCcEEEEcCCCCccccCCCceEEeccCCC------hhhHHHHHHHHHHHHHcCC
Q 023521 48 PSEILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQNLYKNSFTYHCLEDDK------ILQFDDAIQFLEQCERDKA 121 (281)
Q Consensus 48 p~eI~p~~LyLGs~~~a~~~~~L~~~gIt~IInl~~~~~~~~~~~~~y~~vp~~~------~~~f~~a~~fI~~~~~~g~ 121 (281)
|++|.| +||+|+++.+.+.+.|+++||++|||+..+.......++.|+++|..+ ...|+++++||+.++.+|+
T Consensus 1 ~~~I~~-~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~ 79 (138)
T smart00195 1 PSEILP-HLYLGSYSSALNLALLKKLGITHVINVTNEVPNLNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGG 79 (138)
T ss_pred CcEEeC-CeEECChhHcCCHHHHHHcCCCEEEEccCCCCCCCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCC
Confidence 689999 899999999999999999999999999887765556788999988543 3578999999999999999
Q ss_pred eEEEEeCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Q 023521 122 CVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQK 180 (281)
Q Consensus 122 ~VLVHC~~G~sRS~tvv~AYLm~~~g~sl~~A~~~Vr~~RP~i~pn~~f~~qL~~~E~~ 180 (281)
+|||||.+|+|||+++++||||+..||++++|+++|+++||.+.||++|++||++||++
T Consensus 80 ~VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~R~~~~p~~~~~~qL~~~e~~ 138 (138)
T smart00195 80 KVLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDRRPIISPNFGFLRQLIEYERK 138 (138)
T ss_pred eEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHCCccCCCHhHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999963
No 3
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.97 E-value=3e-31 Score=236.34 Aligned_cols=143 Identities=31% Similarity=0.531 Sum_probs=133.5
Q ss_pred cccCCCCceEeCCcEEEcCccccCCHHHHHhCCCcEEEEcCCCCccccCC--CceEEeccCCC------hhhHHHHHHHH
Q 023521 42 LQVSAFPSEILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQNLYKN--SFTYHCLEDDK------ILQFDDAIQFL 113 (281)
Q Consensus 42 ~~~~~~p~eI~p~~LyLGs~~~a~~~~~L~~~gIt~IInl~~~~~~~~~~--~~~y~~vp~~~------~~~f~~a~~fI 113 (281)
.....||.+|+| +||||+..++.+.+.|+++||++|||+++..++.+.+ .|.|..+++.+ +..|.+|+.||
T Consensus 166 ~~ra~FPV~ilp-~LYLg~a~ds~NldvLkk~gI~yviNVTpnlpn~fe~~g~f~YkqipisDh~Sqnls~ffpEAIsfI 244 (343)
T KOG1717|consen 166 PQRASFPVEILP-NLYLGCAKDSTNLDVLKKYGIKYVINVTPNLPNNFENNGEFIYKQIPISDHASQNLSQFFPEAISFI 244 (343)
T ss_pred CcccCcchhhcc-chhcccccccccHHHHHhcCceEEEecCCCCcchhhcCCceeEEeeeccchhhhhhhhhhHHHHHHH
Confidence 446779999999 9999999999999999999999999999999887765 59999999865 46799999999
Q ss_pred HHHHHcCCeEEEEeCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHcCCC
Q 023521 114 EQCERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKIFGSV 185 (281)
Q Consensus 114 ~~~~~~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~sl~~A~~~Vr~~RP~i~pn~~f~~qL~~~E~~L~~~~ 185 (281)
++++.++..|||||-+|+|||+||++||||++..+++.+||++|+.++..|.||.+|+.||..||+.|....
T Consensus 245 deArsk~cgvLVHClaGISRSvTvtvaYLMqkl~lslndAyd~Vk~kksnisPNFnFMgQLldfertlgl~s 316 (343)
T KOG1717|consen 245 DEARSKNCGVLVHCLAGISRSVTVTVAYLMQKLNLSLNDAYDFVKHKKSNISPNFNFMGQLLDFERTLGLES 316 (343)
T ss_pred HHhhccCCcEEEeeeccccchhHHHHHHHHHHhccchhhHHHHHHHhccCCCCCcchhHHHHHHHHHhhccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999986554
No 4
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.97 E-value=7.6e-30 Score=235.14 Aligned_cols=181 Identities=35% Similarity=0.521 Sum_probs=145.9
Q ss_pred ccCCccccccccccc--cCCccccCC---CCCCCCccccccc----ccCCCCceEeCCcEEEcCccccCCHHHHHhCCCc
Q 023521 6 RENPCSVCGHYHKYE--EGEVCGICG---HRSASSAEKTTTL----QVSAFPSEILPDFLYLGSYDNASRSGLLKTQGIS 76 (281)
Q Consensus 6 ~~~~~~~~~~y~~~e--~g~~~~~cg---~~~~~~~~~~~~~----~~~~~p~eI~p~~LyLGs~~~a~~~~~L~~~gIt 76 (281)
..+++..++.+.... ....|...+ +..+...... .. ....-.++|.| +||||+..++.+.+.|+++||+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~p-~l~lg~~~~~~~~~~l~~~~it 102 (285)
T KOG1716|consen 25 LRSPAALKGGSESFSSEYPSLCEKSGSFGGLLPMSASQR-CLPSPSETGNPIVEILP-NLYLGSQGVASDPDLLKKLGIT 102 (285)
T ss_pred CCcccccCCccccccCCCCcccccccccccccCcccccc-cccccccccCCceeecC-CceecCcccccchhhHHHcCCC
Confidence 456666677776665 444455554 1111111110 11 12245678888 9999999999999999999999
Q ss_pred EEEEcCCCCccc--cC-CCceEEeccCCC------hhhHHHHHHHHHHHHHcCCeEEEEeCCCCchHHHHHHHHHHHhcC
Q 023521 77 RVLNTVPSCQNL--YK-NSFTYHCLEDDK------ILQFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCKG 147 (281)
Q Consensus 77 ~IInl~~~~~~~--~~-~~~~y~~vp~~~------~~~f~~a~~fI~~~~~~g~~VLVHC~~G~sRS~tvv~AYLm~~~g 147 (281)
+|||+...++.. .. ..++|++++..+ ..+|+++++||+.++.+|++|||||.+|+|||+|+++||||++++
T Consensus 103 ~vln~~~~~~~~~~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~a~~~~~~vlVHC~~GvSRSat~viAYlM~~~~ 182 (285)
T KOG1716|consen 103 HVLNVSSSCPNPRFLKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEKAREKGGKVLVHCQAGVSRSATLVIAYLMKYEG 182 (285)
T ss_pred EEEEecccCCccccccccCceEEeccccCCccccHHHHHHHHHHHHHHHHhCCCeEEEEcCCccchhHHHHHHHHHHHcC
Confidence 999999987763 33 379999998543 468999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHcCCCCCC
Q 023521 148 WRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKIFGSVDGS 188 (281)
Q Consensus 148 ~sl~~A~~~Vr~~RP~i~pn~~f~~qL~~~E~~L~~~~~~~ 188 (281)
|++++|+++|+.+||.+.||.+|+.||++||..+.......
T Consensus 183 ~~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e~~l~~~~~~~ 223 (285)
T KOG1716|consen 183 LSLEDAYELVKSRRPIISPNFGFLRQLLEFEKRLSKKSPSQ 223 (285)
T ss_pred CCHHHHHHHHHHhCCccCCCHHHHHHHHHHHHhhccCCccc
Confidence 99999999999999999999999999999999998876443
No 5
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.97 E-value=5e-30 Score=209.16 Aligned_cols=124 Identities=40% Similarity=0.650 Sum_probs=114.9
Q ss_pred EEEcCccccCCHHHHHhCCCcEEEEcCCCCcc---ccCCCceEEeccCCC------hhhHHHHHHHHHHHHHcCCeEEEE
Q 023521 56 LYLGSYDNASRSGLLKTQGISRVLNTVPSCQN---LYKNSFTYHCLEDDK------ILQFDDAIQFLEQCERDKACVLVH 126 (281)
Q Consensus 56 LyLGs~~~a~~~~~L~~~gIt~IInl~~~~~~---~~~~~~~y~~vp~~~------~~~f~~a~~fI~~~~~~g~~VLVH 126 (281)
||||+...+. .+.|+++||++|||+..+... ....++.|+.++.++ ...|+.+++||+++..+|++||||
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVH 79 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVH 79 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEE
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEE
Confidence 7999999999 999999999999999987765 445678888887543 468999999999999999999999
Q ss_pred eCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Q 023521 127 CMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQK 180 (281)
Q Consensus 127 C~~G~sRS~tvv~AYLm~~~g~sl~~A~~~Vr~~RP~i~pn~~f~~qL~~~E~~ 180 (281)
|.+|+|||+++++||||++.+|++++|+++||++||.+.||++|++||.+||++
T Consensus 80 C~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~e~~ 133 (133)
T PF00782_consen 80 CKAGLSRSGAVAAAYLMKKNGMSLEEAIEYVRSRRPQINPNPSFIRQLYEYEKK 133 (133)
T ss_dssp ESSSSSHHHHHHHHHHHHHHTSSHHHHHHHHHHHSTTSTHHHHHHHHHHHHHHH
T ss_pred eCCCcccchHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999975
No 6
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.96 E-value=4.2e-28 Score=198.53 Aligned_cols=130 Identities=43% Similarity=0.665 Sum_probs=117.4
Q ss_pred CceEeCCcEEEcCccccCCHHHHHhCCCcEEEEcCCCCcc--ccCCCceEEeccCCC------hhhHHHHHHHHHHHHHc
Q 023521 48 PSEILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQN--LYKNSFTYHCLEDDK------ILQFDDAIQFLEQCERD 119 (281)
Q Consensus 48 p~eI~p~~LyLGs~~~a~~~~~L~~~gIt~IInl~~~~~~--~~~~~~~y~~vp~~~------~~~f~~a~~fI~~~~~~ 119 (281)
+++|.+ +||+|+++.+.+.+.|+..||++|||+..+... ....++.|++++..+ ...++.+++||+....+
T Consensus 2 ~~~i~~-~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~ 80 (139)
T cd00127 2 LSEITP-GLYLGSYPAASDKELLKKLGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREK 80 (139)
T ss_pred cCEEcC-CeEECChhHhcCHHHHHHcCCCEEEEcccCCCCcccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhc
Confidence 478888 999999999999999999999999999886653 345678888877432 24688999999999999
Q ss_pred CCeEEEEeCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCcCCHHHHHHHHHHH
Q 023521 120 KACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYE 178 (281)
Q Consensus 120 g~~VLVHC~~G~sRS~tvv~AYLm~~~g~sl~~A~~~Vr~~RP~i~pn~~f~~qL~~~E 178 (281)
+++|||||.+|+|||+++++||||+.++|++++|+++||++||.+.||++|++||++||
T Consensus 81 ~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~~~~~~~~~~~~l~~~~ 139 (139)
T cd00127 81 GGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPIISPNAGFMRQLKEYE 139 (139)
T ss_pred CCcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCCccCCCHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999997
No 7
>PRK12361 hypothetical protein; Provisional
Probab=99.92 E-value=1.3e-24 Score=216.47 Aligned_cols=136 Identities=22% Similarity=0.305 Sum_probs=120.8
Q ss_pred CCceEeCCcEEEcCccccCCHHHHHhCCCcEEEEcCCCCcc----ccCCCceEEeccCCC-----hhhHHHHHHHHHHHH
Q 023521 47 FPSEILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQN----LYKNSFTYHCLEDDK-----ILQFDDAIQFLEQCE 117 (281)
Q Consensus 47 ~p~eI~p~~LyLGs~~~a~~~~~L~~~gIt~IInl~~~~~~----~~~~~~~y~~vp~~~-----~~~f~~a~~fI~~~~ 117 (281)
..++|.| +||||+...+.+.+.|+++||++|||++.+.+. ....++.|+++|..| ..+|+++++||++++
T Consensus 94 ~~~~I~~-~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~p~~~~l~~a~~~i~~~~ 172 (547)
T PRK12361 94 AIQKIDE-NLYLGCRLFPADLEKLKSNKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSVPTLAQLNQAINWIHRQV 172 (547)
T ss_pred cceEEcC-cEEECCCCCcccHHHHHHcCCCEEEEcccccccccccccccCceEEEeecCCCCCCcHHHHHHHHHHHHHHH
Confidence 4578888 999999999999999999999999999876542 334568999988643 368999999999999
Q ss_pred HcCCeEEEEeCCCCchHHHHHHHHHHHh-cCCCHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHcC
Q 023521 118 RDKACVLVHCMFGKNRSAAIVIAYLMKC-KGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKIFG 183 (281)
Q Consensus 118 ~~g~~VLVHC~~G~sRS~tvv~AYLm~~-~g~sl~~A~~~Vr~~RP~i~pn~~f~~qL~~~E~~L~~ 183 (281)
++|++|||||.+|+|||+++++||||++ ++|++++|+++||++||.+.||++|+++|++|++...-
T Consensus 173 ~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~~~~~~~~~ 239 (547)
T PRK12361 173 RANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLNKRQLRALEKMLEQGKL 239 (547)
T ss_pred HCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCc
Confidence 9999999999999999999999999976 58999999999999999999999999999998766443
No 8
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.86 E-value=1.6e-20 Score=160.41 Aligned_cols=118 Identities=19% Similarity=0.269 Sum_probs=98.1
Q ss_pred CHHHHHhCCCcEEEEcCCCCc---cccCCCceEEeccCCC-----hhhHHHHHHHHHHHHHc----CCeEEEEeCCCCch
Q 023521 66 RSGLLKTQGISRVLNTVPSCQ---NLYKNSFTYHCLEDDK-----ILQFDDAIQFLEQCERD----KACVLVHCMFGKNR 133 (281)
Q Consensus 66 ~~~~L~~~gIt~IInl~~~~~---~~~~~~~~y~~vp~~~-----~~~f~~a~~fI~~~~~~----g~~VLVHC~~G~sR 133 (281)
..+.|++.||++||++..... .....++.|+++|..+ ...+++.+++|++.+.. |++|+|||.+|+||
T Consensus 32 ~l~~L~~~gI~~Iv~l~~~~~~~~~~~~~gi~~~~~p~~D~~~P~~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigR 111 (166)
T PTZ00242 32 YIKELQRYNVTHLVRVCGPTYDAELLEKNGIEVHDWPFDDGAPPPKAVIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGR 111 (166)
T ss_pred HHHHHHhCCCeEEEecCCCCCCHHHHHHCCCEEEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCeEEEECCCCCCH
Confidence 347889999999999965432 2233578999988643 23467778888887755 99999999999999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHcCC
Q 023521 134 SAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKIFGS 184 (281)
Q Consensus 134 S~tvv~AYLm~~~g~sl~~A~~~Vr~~RP~i~pn~~f~~qL~~~E~~L~~~ 184 (281)
||+++++|||+..+|++++|+++||++||.+ +++.|+.+|.+|++.++..
T Consensus 112 Sgt~~a~yL~~~~~~s~~eAi~~vr~~R~~~-i~~~Q~~~l~~~~~~~~~~ 161 (166)
T PTZ00242 112 APILVALALVEYGGMEPLDAVGFVREKRKGA-INQTQLQFLKKYKPRKKAA 161 (166)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHCCCC-chHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999976 5899999999999877654
No 9
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.84 E-value=3.6e-20 Score=165.16 Aligned_cols=118 Identities=15% Similarity=0.229 Sum_probs=98.9
Q ss_pred CHHHHHhCCCcEEEEcCCCCc---cccCCCceEEeccCCC--h---hhHHHHHHHHHHHHHcCCeEEEEeCCCCchHHHH
Q 023521 66 RSGLLKTQGISRVLNTVPSCQ---NLYKNSFTYHCLEDDK--I---LQFDDAIQFLEQCERDKACVLVHCMFGKNRSAAI 137 (281)
Q Consensus 66 ~~~~L~~~gIt~IInl~~~~~---~~~~~~~~y~~vp~~~--~---~~f~~a~~fI~~~~~~g~~VLVHC~~G~sRS~tv 137 (281)
..+.|++.||++||++..... .+...++.|++++..| . ..+++++++|++.++.|++|+|||.+|+||||++
T Consensus 108 yl~eLk~~gV~~lVrlcE~~Yd~~~~~~~GI~~~~lpipDg~aPs~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl 187 (241)
T PTZ00393 108 YIKEMKNYNVTDLVRTCERTYNDGEITSAGINVHELIFPDGDAPTVDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVL 187 (241)
T ss_pred HHHHHHHcCCCEEEECCCCCCCHHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 347889999999999865432 2344578887776543 3 3567788888888889999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHcCCC
Q 023521 138 VIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKIFGSV 185 (281)
Q Consensus 138 v~AYLm~~~g~sl~~A~~~Vr~~RP~i~pn~~f~~qL~~~E~~L~~~~ 185 (281)
+++|||. .||++++|+++||++||.+ ++..|+++|++|++++.+++
T Consensus 188 ~AayLI~-~GmspeeAI~~VR~~RPgA-In~~Q~~fL~~y~~~~~k~~ 233 (241)
T PTZ00393 188 ASIVLIE-FGMDPIDAIVFIRDRRKGA-INKRQLQFLKAYKKKKKKKN 233 (241)
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhccccc
Confidence 9999998 7999999999999999977 58999999999999987654
No 10
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.83 E-value=4.4e-20 Score=153.27 Aligned_cols=132 Identities=24% Similarity=0.437 Sum_probs=111.5
Q ss_pred cEEEcCcccc-CCHHHHHhCCCcEEEEcCCCCccc-----cC-CCceEEeccCCC------hhhHHHHHHHHHHHHHcCC
Q 023521 55 FLYLGSYDNA-SRSGLLKTQGISRVLNTVPSCQNL-----YK-NSFTYHCLEDDK------ILQFDDAIQFLEQCERDKA 121 (281)
Q Consensus 55 ~LyLGs~~~a-~~~~~L~~~gIt~IInl~~~~~~~-----~~-~~~~y~~vp~~~------~~~f~~a~~fI~~~~~~g~ 121 (281)
++.+|-.+.- .+.+.+++.|+..++.+.++.+-. ++ .+++++.++..| ...+.++++||++....|+
T Consensus 31 ~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~yE~~a~s~~wk~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLGk 110 (183)
T KOG1719|consen 31 FVILGAMPFRSMDVPLIKKENVGGVVTLNEPYELLAPSNLWKNYGIEFLVIPTRDYTGAPSLENIQKAVEFIHKNASLGK 110 (183)
T ss_pred eEEEeecccccccchHHHhcCCCeEEEeCCchhhhhhhHHHHhccceeEEeccccccCCCCHHHHHHHHHHHHhccccCC
Confidence 6667665433 456788999999999987754322 22 367888887643 3578899999999999999
Q ss_pred eEEEEeCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHcCCCC
Q 023521 122 CVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKIFGSVD 186 (281)
Q Consensus 122 ~VLVHC~~G~sRS~tvv~AYLm~~~g~sl~~A~~~Vr~~RP~i~pn~~f~~qL~~~E~~L~~~~~ 186 (281)
.|+|||++|.+||+|+|+||||..++|+.++|+++||++||.|.+-++|++.|.+|...+....+
T Consensus 111 tvYVHCKAGRtRSaTvV~cYLmq~~~wtpe~A~~~vr~iRp~VlL~~~Qw~~l~ef~~~~~~~~s 175 (183)
T KOG1719|consen 111 TVYVHCKAGRTRSATVVACYLMQHKNWTPEAAVEHVRKIRPRVLLRPAQWDVLKEFYKQIVANAS 175 (183)
T ss_pred eEEEEecCCCccchhhhhhhhhhhcCCCHHHHHHHHHhcCcceeecHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999988876543
No 11
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.80 E-value=7.8e-19 Score=152.47 Aligned_cols=160 Identities=19% Similarity=0.262 Sum_probs=113.3
Q ss_pred Cccccccccccc---cCCccccCCCC-CCCCcccccccccCCCCceEeCCcEEEcCccccCCHHHHHhCCCcEEEEcCCC
Q 023521 9 PCSVCGHYHKYE---EGEVCGICGHR-SASSAEKTTTLQVSAFPSEILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPS 84 (281)
Q Consensus 9 ~~~~~~~y~~~e---~g~~~~~cg~~-~~~~~~~~~~~~~~~~p~eI~p~~LyLGs~~~a~~~~~L~~~gIt~IInl~~~ 84 (281)
.|..|.+|..|| .|+.+|+-..+ +....++.++. . |...+.+-+.+. -..+++.++++.|+.+...
T Consensus 35 ~~~~~~~ye~ye~ve~gdfnwI~p~~~i~f~~p~~~s~----g---i~~~f~~~~~~~---~~~~~~~~~v~s~vrln~~ 104 (225)
T KOG1720|consen 35 SSFNVDEYEHYEAVENGDFNWIIPDRFIAFAGPHLKSR----G---IESGFPLHLPQP---YIQYFKNNNVTSIVRLNKR 104 (225)
T ss_pred heecchhheeeeccCCCCcceeccchhhhhcCcccccc----c---hhhcccccCChh---HHHHhhhcccceEEEcCCC
Confidence 355666555554 77778876553 22322322111 0 222233333322 2356779999999998764
Q ss_pred C---ccccCCCceEEecc--CCChhhHHHHHHHH---HHHHHcCCeEEEEeCCCCchHHHHHHHHHHHhcCCCHHHHHHH
Q 023521 85 C---QNLYKNSFTYHCLE--DDKILQFDDAIQFL---EQCERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQW 156 (281)
Q Consensus 85 ~---~~~~~~~~~y~~vp--~~~~~~f~~a~~fI---~~~~~~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~sl~~A~~~ 156 (281)
. ..+...++.+++++ |...+....+.+|| +.+++ |++|+|||++|+|||+++++||||+.+||+..||+++
T Consensus 105 ~yd~~~f~~~Gi~h~~l~f~Dg~tP~~~~v~~fv~i~e~~~~-~g~iaVHCkaGlGRTG~liAc~lmy~~g~ta~eaI~~ 183 (225)
T KOG1720|consen 105 LYDAKRFTDAGIDHHDLFFADGSTPTDAIVKEFVKIVENAEK-GGKIAVHCKAGLGRTGTLIACYLMYEYGMTAGEAIAW 183 (225)
T ss_pred CCChHHhcccCceeeeeecCCCCCCCHHHHHHHHHHHHHHHh-cCeEEEEeccCCCchhHHHHHHHHHHhCCCHHHHHHH
Confidence 4 44566678888775 44455555555554 55666 8999999999999999999999999999999999999
Q ss_pred HHHhCCCCcCCHHHHHHHHHHHH
Q 023521 157 VKERRPSVNLTEDVHQQLQEYEQ 179 (281)
Q Consensus 157 Vr~~RP~i~pn~~f~~qL~~~E~ 179 (281)
||.+||.+...+.|...|.++-.
T Consensus 184 lR~~RpG~V~gpqQ~~l~~~q~~ 206 (225)
T KOG1720|consen 184 LRICRPGAVIGPQQHKLLHKQRD 206 (225)
T ss_pred HHhcCCccccCHHHHHHHHHHHH
Confidence 99999999999999998888766
No 12
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.62 E-value=3.7e-15 Score=128.77 Aligned_cols=89 Identities=26% Similarity=0.311 Sum_probs=65.5
Q ss_pred cCCCceEEeccCC-----ChhhHHHHHHHHHHHHHcCCeEEEEeCCCCchHHHHHHHHHHHhcC-CCHHHHHHHHHHhCC
Q 023521 89 YKNSFTYHCLEDD-----KILQFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCKG-WRLAQSHQWVKERRP 162 (281)
Q Consensus 89 ~~~~~~y~~vp~~-----~~~~f~~a~~fI~~~~~~g~~VLVHC~~G~sRS~tvv~AYLm~~~g-~sl~~A~~~Vr~~RP 162 (281)
...+..+..++.. +...++++++||+.++++|++|+|||++|+|||||+++||||++.+ +..++++..++.+||
T Consensus 69 ~~~~~~~~~~~~~D~~~p~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~r~ 148 (180)
T COG2453 69 ENDGIQVLHLPILDGTVPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRRP 148 (180)
T ss_pred ccCCceeeeeeecCCCCCcHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhcCC
Confidence 3344555555433 2368999999999999999999999999999999999999999955 467777777777776
Q ss_pred CCcCCHHHHHHHHHH
Q 023521 163 SVNLTEDVHQQLQEY 177 (281)
Q Consensus 163 ~i~pn~~f~~qL~~~ 177 (281)
.......|...+.+.
T Consensus 149 ~~v~~~~q~~~~~e~ 163 (180)
T COG2453 149 GAVVTEIQHLFELEQ 163 (180)
T ss_pred cccccHHHHHHHHHH
Confidence 533344443333333
No 13
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.37 E-value=3.1e-12 Score=109.18 Aligned_cols=133 Identities=17% Similarity=0.221 Sum_probs=79.1
Q ss_pred ceEeCCcEEEcCccccCCHHHHHhCCCcEEEEcCCCCcc------ccCCCceEEeccCCChh------hHHHHHHHHHHH
Q 023521 49 SEILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQN------LYKNSFTYHCLEDDKIL------QFDDAIQFLEQC 116 (281)
Q Consensus 49 ~eI~p~~LyLGs~~~a~~~~~L~~~gIt~IInl~~~~~~------~~~~~~~y~~vp~~~~~------~f~~a~~fI~~~ 116 (281)
..|.+ +||-|+++.+.+..+|+++||++||++..+... ....++.+++++..... .-+.+.+.++..
T Consensus 8 ~~V~~-~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~i 86 (164)
T PF03162_consen 8 GMVEP-GVYRSAQPTPANFPFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEII 86 (164)
T ss_dssp EEEET-TEEEESS--HHHHHHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHH
T ss_pred cCCCC-CccCCCCCChhhHHHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHH
Confidence 56777 999999999999999999999999999886432 13467888888754221 122333344332
Q ss_pred H-HcCCeEEEEeCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHcCC
Q 023521 117 E-RDKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKIFGS 184 (281)
Q Consensus 117 ~-~~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~sl~~A~~~Vr~~RP~i~pn~~f~~qL~~~E~~L~~~ 184 (281)
+ .+..+|||||..|..|||+|+++|= +.+||++..+++..+.--. ...+..-..+++.|+..+...
T Consensus 87 ld~~n~PvLiHC~~G~~rTG~vvg~lR-k~Q~W~~~~i~~Ey~~f~~-~~~~~~~~~fIe~f~~~~~~~ 153 (164)
T PF03162_consen 87 LDPRNYPVLIHCNHGKDRTGLVVGCLR-KLQGWSLSSIFDEYRRFAG-PKIRYLDEQFIELFDVELVVP 153 (164)
T ss_dssp H-GGG-SEEEE-SSSSSHHHHHHHHHH-HHTTB-HHHHHHHHHHHHG-GG--HHHHHHHHT--------
T ss_pred hCCCCCCEEEEeCCCCcchhhHHHHHH-HHcCCCHHHHHHHHHHhcC-CCCcHHHHHHHHhcCcceecc
Confidence 2 3468999999999999999999999 7799999999998776432 244555666666676666443
No 14
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=99.33 E-value=2.1e-11 Score=99.59 Aligned_cols=114 Identities=21% Similarity=0.323 Sum_probs=87.0
Q ss_pred HHHHHhCCCcEEEEcCC---CCccccCCCceEEeccCCC-hhh----HHHHHHHHHHHH--HcCCeEEEEeCCCCchHHH
Q 023521 67 SGLLKTQGISRVLNTVP---SCQNLYKNSFTYHCLEDDK-ILQ----FDDAIQFLEQCE--RDKACVLVHCMFGKNRSAA 136 (281)
Q Consensus 67 ~~~L~~~gIt~IInl~~---~~~~~~~~~~~y~~vp~~~-~~~----f~~a~~fI~~~~--~~g~~VLVHC~~G~sRS~t 136 (281)
.+.|+++|+++|+.++. +...+.+++++.+.++-++ .+. .++-...+.... .-|..|.|||.+|+||++.
T Consensus 34 ieELkKygvttvVRVCe~TYdt~~lek~GI~Vldw~f~dg~ppp~qvv~~w~~l~~~~f~e~p~~cvavhcvaglgrapv 113 (173)
T KOG2836|consen 34 IEELKKYGVTTVVRVCEPTYDTTPLEKEGITVLDWPFDDGAPPPNQVVDDWLSLVKTKFREEPGCCVAVHCVAGLGRAPV 113 (173)
T ss_pred HHHHHhcCCeEEEEecccccCCchhhhcCceEeecccccCCCCchHHHHHHHHHHHHHHhhCCCCeEEEEeecccCcchH
Confidence 37899999999998754 4445677899999887543 222 222222222211 2378899999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHc
Q 023521 137 IVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKIF 182 (281)
Q Consensus 137 vv~AYLm~~~g~sl~~A~~~Vr~~RP~i~pn~~f~~qL~~~E~~L~ 182 (281)
+|+.-|+. .||.+++|++++|.+| ...+|..++.+|..|..+..
T Consensus 114 lvalalie-~gmkyedave~ir~kr-rga~n~kql~~lekyrpk~r 157 (173)
T KOG2836|consen 114 LVALALIE-AGMKYEDAVEMIRQKR-RGAINSKQLLYLEKYRPKMR 157 (173)
T ss_pred HHHHHHHH-ccccHHHHHHHHHHHh-hccccHHHHHHHHHhCccce
Confidence 99998888 8999999999999999 47899999999998865543
No 15
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.29 E-value=5.4e-11 Score=98.25 Aligned_cols=113 Identities=17% Similarity=0.167 Sum_probs=84.4
Q ss_pred eEeCCcEEEcCccccCCHHHHHhCCCcEEEEcCCCCcc----c--------cCCCceEEeccCCCh-hhHHHHHHHHHHH
Q 023521 50 EILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQN----L--------YKNSFTYHCLEDDKI-LQFDDAIQFLEQC 116 (281)
Q Consensus 50 eI~p~~LyLGs~~~a~~~~~L~~~gIt~IInl~~~~~~----~--------~~~~~~y~~vp~~~~-~~f~~a~~fI~~~ 116 (281)
+|-+ .+|++++....+.+.|+++||++|||+....+. . ...++.|+.+|.... ..-+.+..|.+..
T Consensus 4 ~i~~-~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~~~~~~v~~f~~~~ 82 (135)
T TIGR01244 4 KLTE-HLYVSPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGDITPDDVETFRAAI 82 (135)
T ss_pred EcCC-CeeEcCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCCCCHHHHHHHHHHH
Confidence 4555 899999999999999999999999999753211 1 235889999986421 2223344444444
Q ss_pred HHcCCeEEEEeCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCc
Q 023521 117 ERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVN 165 (281)
Q Consensus 117 ~~~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~sl~~A~~~Vr~~RP~i~ 165 (281)
....++||+||++|. ||+.+.+.++.. .|++.+++++..+.....+.
T Consensus 83 ~~~~~pvL~HC~sG~-Rt~~l~al~~~~-~g~~~~~i~~~~~~~G~~~~ 129 (135)
T TIGR01244 83 GAAEGPVLAYCRSGT-RSSLLWGFRQAA-EGVPVEEIVRRAQAAGYDLS 129 (135)
T ss_pred HhCCCCEEEEcCCCh-HHHHHHHHHHHH-cCCCHHHHHHHHHHcCCCcc
Confidence 345789999999999 998888666665 89999999999998876544
No 16
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.21 E-value=9.1e-11 Score=90.35 Aligned_cols=84 Identities=20% Similarity=0.290 Sum_probs=62.2
Q ss_pred ceEEeccCCChhh-HHHHHHHHHH---HHH---cCCeEEEEeCCCCchHHHHHHHHHHHhc------CCCHHHHHHHHHH
Q 023521 93 FTYHCLEDDKILQ-FDDAIQFLEQ---CER---DKACVLVHCMFGKNRSAAIVIAYLMKCK------GWRLAQSHQWVKE 159 (281)
Q Consensus 93 ~~y~~vp~~~~~~-f~~a~~fI~~---~~~---~g~~VLVHC~~G~sRS~tvv~AYLm~~~------g~sl~~A~~~Vr~ 159 (281)
+.|..+|+...+. -+..++|++. ... .+++|+|||.+|+|||++++++|++... ..++.+++..+|.
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 84 (105)
T smart00012 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRK 84 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Confidence 4455566554332 2444444444 332 2689999999999999999999999764 3588999999999
Q ss_pred hCCCCcCCHHHHHHHHH
Q 023521 160 RRPSVNLTEDVHQQLQE 176 (281)
Q Consensus 160 ~RP~i~pn~~f~~qL~~ 176 (281)
.|+....+..++..+..
T Consensus 85 ~r~~~~~~~~q~~~~~~ 101 (105)
T smart00012 85 QRPGMVQTFEQYLFLYR 101 (105)
T ss_pred hhhhhCCcHHHHHHHHH
Confidence 99998888888777654
No 17
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.21 E-value=9.1e-11 Score=90.35 Aligned_cols=84 Identities=20% Similarity=0.290 Sum_probs=62.2
Q ss_pred ceEEeccCCChhh-HHHHHHHHHH---HHH---cCCeEEEEeCCCCchHHHHHHHHHHHhc------CCCHHHHHHHHHH
Q 023521 93 FTYHCLEDDKILQ-FDDAIQFLEQ---CER---DKACVLVHCMFGKNRSAAIVIAYLMKCK------GWRLAQSHQWVKE 159 (281)
Q Consensus 93 ~~y~~vp~~~~~~-f~~a~~fI~~---~~~---~g~~VLVHC~~G~sRS~tvv~AYLm~~~------g~sl~~A~~~Vr~ 159 (281)
+.|..+|+...+. -+..++|++. ... .+++|+|||.+|+|||++++++|++... ..++.+++..+|.
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 84 (105)
T smart00404 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELRK 84 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Confidence 4455566554332 2444444444 332 2689999999999999999999999764 3588999999999
Q ss_pred hCCCCcCCHHHHHHHHH
Q 023521 160 RRPSVNLTEDVHQQLQE 176 (281)
Q Consensus 160 ~RP~i~pn~~f~~qL~~ 176 (281)
.|+....+..++..+..
T Consensus 85 ~r~~~~~~~~q~~~~~~ 101 (105)
T smart00404 85 QRPGMVQTFEQYLFLYR 101 (105)
T ss_pred hhhhhCCcHHHHHHHHH
Confidence 99998888888777654
No 18
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.17 E-value=9.1e-11 Score=99.66 Aligned_cols=101 Identities=20% Similarity=0.227 Sum_probs=60.5
Q ss_pred CcEEEcCccc----------cCCHHHHHhCCCcEEEEcCCCCc-------c----ccCCCceEEeccCC--ChhhHH---
Q 023521 54 DFLYLGSYDN----------ASRSGLLKTQGISRVLNTVPSCQ-------N----LYKNSFTYHCLEDD--KILQFD--- 107 (281)
Q Consensus 54 ~~LyLGs~~~----------a~~~~~L~~~gIt~IInl~~~~~-------~----~~~~~~~y~~vp~~--~~~~f~--- 107 (281)
++|.|...+- ..+.+.|+..||+.||.+....+ . ....++.|+++|+. ..+.++
T Consensus 41 ~~Lglt~~PG~k~~d~~RdL~~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~~~~ 120 (168)
T PF05706_consen 41 GFLGLTFLPGCKFKDWRRDLQADLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFAAAW 120 (168)
T ss_dssp SEEEEES-TT-EETTEEB-HHHHHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---HHHHH
T ss_pred ceeeeecCCCcccccccchHHHHHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHHHHH
Confidence 3566655444 34567899999999999865321 1 12346888887754 345544
Q ss_pred HHHHHHHHHHHcCCeEEEEeCCCCchHHHHHHHHHHHhc-CCCHHHHH
Q 023521 108 DAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCK-GWRLAQSH 154 (281)
Q Consensus 108 ~a~~fI~~~~~~g~~VLVHC~~G~sRS~tvv~AYLm~~~-g~sl~~A~ 154 (281)
++++-|...+++|++|+|||..|+|||+.|++++|+.-. .++.++|+
T Consensus 121 ~i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 121 QILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp HHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred HHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 445566677889999999999999999999999998854 46888886
No 19
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=99.04 E-value=4.2e-10 Score=100.03 Aligned_cols=86 Identities=19% Similarity=0.317 Sum_probs=65.9
Q ss_pred CCceEEeccCCChh-hHHHHHHHHHHHHHc-----CCeEEEEeCCCCchHHHHHHHHHHHhc-----CCCHHHHHHHHHH
Q 023521 91 NSFTYHCLEDDKIL-QFDDAIQFLEQCERD-----KACVLVHCMFGKNRSAAIVIAYLMKCK-----GWRLAQSHQWVKE 159 (281)
Q Consensus 91 ~~~~y~~vp~~~~~-~f~~a~~fI~~~~~~-----g~~VLVHC~~G~sRS~tvv~AYLm~~~-----g~sl~~A~~~Vr~ 159 (281)
..+.|...++...+ ..++.++|++...+. +++|+|||.+|+||||++++++++... .+++.+++..+|+
T Consensus 131 ~~~~~~~W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~iR~ 210 (231)
T cd00047 131 THFQYTGWPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELRS 210 (231)
T ss_pred EEEeECCCCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHHHh
Confidence 34556656665443 335555666555433 689999999999999999999986543 6799999999999
Q ss_pred hCCCCcCCHHHHHHHHH
Q 023521 160 RRPSVNLTEDVHQQLQE 176 (281)
Q Consensus 160 ~RP~i~pn~~f~~qL~~ 176 (281)
.|+.+..+..++..+..
T Consensus 211 ~R~~~v~~~~Qy~f~~~ 227 (231)
T cd00047 211 QRPGMVQTEEQYIFLYR 227 (231)
T ss_pred ccccccCCHHHHHHHHH
Confidence 99999999988887764
No 20
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=98.96 E-value=2.7e-09 Score=96.52 Aligned_cols=72 Identities=15% Similarity=0.263 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHHHc----CCeEEEEeCCCCchHHHHHHHHHHH-----hcCCCHHHHHHHHHHhCCCCcCCHHHHHHHH
Q 023521 105 QFDDAIQFLEQCERD----KACVLVHCMFGKNRSAAIVIAYLMK-----CKGWRLAQSHQWVKERRPSVNLTEDVHQQLQ 175 (281)
Q Consensus 105 ~f~~a~~fI~~~~~~----g~~VLVHC~~G~sRS~tvv~AYLm~-----~~g~sl~~A~~~Vr~~RP~i~pn~~f~~qL~ 175 (281)
.-...++||....+. +++|+|||.+|+||||++++++++. ...+++.+++..+|..|+.+..+..|+..+.
T Consensus 174 ~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~~~~Qy~f~~ 253 (258)
T smart00194 174 SPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPGMVQTEEQYIFLY 253 (258)
T ss_pred CHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhccccccCCHHHHHHHH
Confidence 345566666665543 6899999999999999999998774 3467999999999999999999999888775
Q ss_pred H
Q 023521 176 E 176 (281)
Q Consensus 176 ~ 176 (281)
.
T Consensus 254 ~ 254 (258)
T smart00194 254 R 254 (258)
T ss_pred H
Confidence 4
No 21
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=98.87 E-value=1.3e-08 Score=81.32 Aligned_cols=88 Identities=23% Similarity=0.273 Sum_probs=55.5
Q ss_pred eEeCCcEEEcCccccCCHHHHHhCCCcEEEEcCCCCcc------------ccCCCceEEeccCCC-hhhHHHHHHHHHHH
Q 023521 50 EILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQN------------LYKNSFTYHCLEDDK-ILQFDDAIQFLEQC 116 (281)
Q Consensus 50 eI~p~~LyLGs~~~a~~~~~L~~~gIt~IInl~~~~~~------------~~~~~~~y~~vp~~~-~~~f~~a~~fI~~~ 116 (281)
+|-+ .+|++++....+.+.|++.||++|||+.++.+. ....++.|+.+|+.. ...-+.+..|.+..
T Consensus 4 ~i~~-~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l 82 (110)
T PF04273_consen 4 QISD-DLSVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADAL 82 (110)
T ss_dssp EEET-TEEEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHH
T ss_pred ecCC-CeEECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHH
Confidence 4556 899999999999999999999999999765321 123579999999764 23445555665555
Q ss_pred HHcCCeEEEEeCCCCchHHHHHH
Q 023521 117 ERDKACVLVHCMFGKNRSAAIVI 139 (281)
Q Consensus 117 ~~~g~~VLVHC~~G~sRS~tvv~ 139 (281)
....++||+||+.|. |+.++.+
T Consensus 83 ~~~~~Pvl~hC~sG~-Ra~~l~~ 104 (110)
T PF04273_consen 83 ESLPKPVLAHCRSGT-RASALWA 104 (110)
T ss_dssp HTTTTSEEEE-SCSH-HHHHHHH
T ss_pred HhCCCCEEEECCCCh-hHHHHHH
Confidence 556789999999996 9877644
No 22
>PLN02727 NAD kinase
Probab=98.77 E-value=2.9e-08 Score=102.63 Aligned_cols=98 Identities=12% Similarity=0.126 Sum_probs=76.8
Q ss_pred cEEEcCccccCCHHHHHhCCCcEEEEcCCCCc--ccc---------CCCceEEeccCC--ChhhHHHHHHHHHHH-HHcC
Q 023521 55 FLYLGSYDNASRSGLLKTQGISRVLNTVPSCQ--NLY---------KNSFTYHCLEDD--KILQFDDAIQFLEQC-ERDK 120 (281)
Q Consensus 55 ~LyLGs~~~a~~~~~L~~~gIt~IInl~~~~~--~~~---------~~~~~y~~vp~~--~~~~f~~a~~fI~~~-~~~g 120 (281)
.+|.+++..+.+.++|.+.||++|||+..+.. ..+ ..+++|+++|.. ..+.-+++.+|.+.. ....
T Consensus 262 ~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~apt~EqVe~fa~~l~~slp 341 (986)
T PLN02727 262 AFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAPSAEQVEKFASLVSDSSK 341 (986)
T ss_pred eEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHhhcC
Confidence 68999999999999999999999999976543 111 247999999874 334456666666655 3457
Q ss_pred CeEEEEeCCCCchHHHHHHHHHHHhcCCCHHH
Q 023521 121 ACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQ 152 (281)
Q Consensus 121 ~~VLVHC~~G~sRS~tvv~AYLm~~~g~sl~~ 152 (281)
++||+||+.|..|+++++++||.+.-+-....
T Consensus 342 kPVLvHCKSGarRAGamvA~yl~~~~~~~~~~ 373 (986)
T PLN02727 342 KPIYLHSKEGVWRTSAMVSRWKQYMTRSAERL 373 (986)
T ss_pred CCEEEECCCCCchHHHHHHHHHHHHcccchhh
Confidence 89999999999999999999999977764333
No 23
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=98.72 E-value=6.3e-08 Score=94.77 Aligned_cols=61 Identities=18% Similarity=0.296 Sum_probs=55.7
Q ss_pred EEEEeCCCCchHHHHHHHHHHHhcCC-CHHHHHHHHHHhCCC-CcCCHHHHHHHHHHHHHHcC
Q 023521 123 VLVHCMFGKNRSAAIVIAYLMKCKGW-RLAQSHQWVKERRPS-VNLTEDVHQQLQEYEQKIFG 183 (281)
Q Consensus 123 VLVHC~~G~sRS~tvv~AYLm~~~g~-sl~~A~~~Vr~~RP~-i~pn~~f~~qL~~~E~~L~~ 183 (281)
.+|||.+|+||||+++++|+|+..++ ++++.+..+|..|+. +.-+.+|+..|.+.+.+|.-
T Consensus 469 PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~dlR~qRng~MVQt~eQy~~l~~~~~~~~~ 531 (535)
T PRK15375 469 PMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFRNSRNNRMLEDASQFVQLKAMQAQLLM 531 (535)
T ss_pred ceEEcCCCCchHHHHHHHHHHhccccCCHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHhh
Confidence 57999999999999999999987665 999999999999997 88899999999999988754
No 24
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=98.57 E-value=2.3e-07 Score=81.52 Aligned_cols=82 Identities=15% Similarity=0.243 Sum_probs=63.6
Q ss_pred EEeccCCChh-hHHHHHHHHHHHHHc----CCeEEEEeCCCCchHHHHHHHHHHHh-----cCCCHHHHHHHHHHhCCCC
Q 023521 95 YHCLEDDKIL-QFDDAIQFLEQCERD----KACVLVHCMFGKNRSAAIVIAYLMKC-----KGWRLAQSHQWVKERRPSV 164 (281)
Q Consensus 95 y~~vp~~~~~-~f~~a~~fI~~~~~~----g~~VLVHC~~G~sRS~tvv~AYLm~~-----~g~sl~~A~~~Vr~~RP~i 164 (281)
|...++...+ ....+++|++...+. .++|+|||..|.|||++++++.+|.. ...++.+++..+|+.|+.+
T Consensus 140 ~~~W~~~~~P~~~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~ 219 (235)
T PF00102_consen 140 YTNWPDDGVPPSPESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRPGA 219 (235)
T ss_dssp EESSSSSSSGSSSHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTTS
T ss_pred eeeccccccccccchhhhhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCCCc
Confidence 3333433333 466777777776654 48999999999999999999987742 2469999999999999999
Q ss_pred cCCHHHHHHHHH
Q 023521 165 NLTEDVHQQLQE 176 (281)
Q Consensus 165 ~pn~~f~~qL~~ 176 (281)
..+..++..+..
T Consensus 220 i~~~~qy~f~~~ 231 (235)
T PF00102_consen 220 IQSPEQYRFCYM 231 (235)
T ss_dssp SSSHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 999998887764
No 25
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=98.55 E-value=1.4e-07 Score=91.79 Aligned_cols=136 Identities=16% Similarity=0.273 Sum_probs=89.9
Q ss_pred ccCCCCceEeCCcEEEcCccccCCHHHHHh--CCCcEEEEcCCCCc---cccCCCceEEeccCCChhhHH---HHHHHHH
Q 023521 43 QVSAFPSEILPDFLYLGSYDNASRSGLLKT--QGISRVLNTVPSCQ---NLYKNSFTYHCLEDDKILQFD---DAIQFLE 114 (281)
Q Consensus 43 ~~~~~p~eI~p~~LyLGs~~~a~~~~~L~~--~gIt~IInl~~~~~---~~~~~~~~y~~vp~~~~~~f~---~a~~fI~ 114 (281)
....||.+..+ .+|-.+...... +|.. .+==.|.|+..+.. ..+.+.+.-..++|.-.+.++ .+++-++
T Consensus 23 IamsfPa~~~e-s~yRN~l~dV~~--fL~s~H~~~y~vyNL~~er~yd~~~f~g~V~~~~~~Dh~~P~L~~l~~~c~~~~ 99 (434)
T KOG2283|consen 23 IAMSFPAEGIE-SLYRNNLEDVVL--FLDSKHKDHYKVYNLSSERLYDPSRFHGRVARFGFDDHNPPPLELLCPFCKSMD 99 (434)
T ss_pred EEEeCCCCcch-hhhcCCHHHHHH--HHhhccCCceEEEecCccccCCccccccceeecCCCCCCCCcHHHHHHHHHCHH
Confidence 34456666666 466665543332 3322 22223567774211 112222333344454445544 5555677
Q ss_pred HHHHc--CCeEEEEeCCCCchHHHHHHHHHHHhcCC-CHHHHHHHHHHhC---C--CCcCCHHHHHHHHHHHHHH
Q 023521 115 QCERD--KACVLVHCMFGKNRSAAIVIAYLMKCKGW-RLAQSHQWVKERR---P--SVNLTEDVHQQLQEYEQKI 181 (281)
Q Consensus 115 ~~~~~--g~~VLVHC~~G~sRS~tvv~AYLm~~~g~-sl~~A~~~Vr~~R---P--~i~pn~~f~~qL~~~E~~L 181 (281)
.++.+ ...|.|||++|++|+|++++||||+..-. ++++|+++.-++| . .....+.+.++|..|+..|
T Consensus 100 ~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~~~~~~~~~PSq~RYv~Y~~~~l 174 (434)
T KOG2283|consen 100 NWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDEGKSKGVTIPSQRRYVGYFSRVL 174 (434)
T ss_pred HHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhccccccCCccCchhhHHHHHHHHHh
Confidence 77765 35699999999999999999999998777 5999999999999 4 3567889999999999953
No 26
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=98.49 E-value=6.5e-07 Score=75.89 Aligned_cols=105 Identities=17% Similarity=0.176 Sum_probs=54.6
Q ss_pred eEeCCcEEEcCccc---cCCHHHHHhCCCcEEEEcCCCC-----ccccCCCceEEeccCCChh-----------------
Q 023521 50 EILPDFLYLGSYDN---ASRSGLLKTQGISRVLNTVPSC-----QNLYKNSFTYHCLEDDKIL----------------- 104 (281)
Q Consensus 50 eI~p~~LyLGs~~~---a~~~~~L~~~gIt~IInl~~~~-----~~~~~~~~~y~~vp~~~~~----------------- 104 (281)
.|-++.||-++... ..+.+.|+++||++|||+.... +.....++.|+.++.....
T Consensus 15 ~ir~g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 94 (164)
T PF13350_consen 15 RIRPGRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADA 94 (164)
T ss_dssp TS-TTSEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHH
T ss_pred eecCCcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccch
Confidence 45667899887655 3355788999999999996532 2234457888877642100
Q ss_pred --------------hHHHHHHHHHHHHHcCCeEEEEeCCCCchHHHHHHHHHHHhcCCCHHHHHH
Q 023521 105 --------------QFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQ 155 (281)
Q Consensus 105 --------------~f~~a~~fI~~~~~~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~sl~~A~~ 155 (281)
.-+...++++......++|||||.+|+.|+|.+++- |+.-.|.+-++.++
T Consensus 95 ~~~~~~~Y~~~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~al-ll~~lGV~~~~I~~ 158 (164)
T PF13350_consen 95 PRGMLEFYREMLESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAAL-LLSLLGVPDEDIIA 158 (164)
T ss_dssp HHHHHHHHHHGGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHH-HHHHTT--HHHHHH
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHH-HHHHcCCCHHHHHH
Confidence 001222333333434579999999999999876655 55668998776654
No 27
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=98.45 E-value=1.1e-06 Score=81.97 Aligned_cols=55 Identities=16% Similarity=0.100 Sum_probs=45.2
Q ss_pred CCeEEEEeCCCCchHHHHHHHHHHH-----hcCCCHHHHHHHHHHhCCCCcCCHHHHHHH
Q 023521 120 KACVLVHCMFGKNRSAAIVIAYLMK-----CKGWRLAQSHQWVKERRPSVNLTEDVHQQL 174 (281)
Q Consensus 120 g~~VLVHC~~G~sRS~tvv~AYLm~-----~~g~sl~~A~~~Vr~~RP~i~pn~~f~~qL 174 (281)
.++|+|||.+|+||||++++...+- ....++.+++..+|..|+.+..+..++..+
T Consensus 229 ~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY~F~ 288 (303)
T PHA02742 229 EPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVRDLRKQRHNCLSLPQQYIFC 288 (303)
T ss_pred CCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccccCCHHHHHHH
Confidence 3789999999999999988776543 334589999999999999999998866553
No 28
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=98.41 E-value=1.6e-06 Score=80.76 Aligned_cols=83 Identities=18% Similarity=0.203 Sum_probs=58.0
Q ss_pred ceEEeccCCChh-hHHHHHHHHHHHHH------------cCCeEEEEeCCCCchHHHHHHHHHH-----HhcCCCHHHHH
Q 023521 93 FTYHCLEDDKIL-QFDDAIQFLEQCER------------DKACVLVHCMFGKNRSAAIVIAYLM-----KCKGWRLAQSH 154 (281)
Q Consensus 93 ~~y~~vp~~~~~-~f~~a~~fI~~~~~------------~g~~VLVHC~~G~sRS~tvv~AYLm-----~~~g~sl~~A~ 154 (281)
+.|...|+...+ .-...++||....+ ..++|+|||.+|+||||++++...+ .....++.+++
T Consensus 181 fqyt~WPd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V 260 (298)
T PHA02740 181 FQYTAWPADGFSHDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANAL 260 (298)
T ss_pred EeecCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 344445555443 34455666543321 2468999999999999998776543 34455999999
Q ss_pred HHHHHhCCCCcCCHHHHHHHH
Q 023521 155 QWVKERRPSVNLTEDVHQQLQ 175 (281)
Q Consensus 155 ~~Vr~~RP~i~pn~~f~~qL~ 175 (281)
..+|..|+.+..+..++..+.
T Consensus 261 ~~lR~qR~~~Vqt~~QY~F~y 281 (298)
T PHA02740 261 KKVRQKKYGCMNCLDDYVFCY 281 (298)
T ss_pred HHHHhhCccccCCHHHHHHHH
Confidence 999999999999988655543
No 29
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=98.41 E-value=1e-06 Score=82.95 Aligned_cols=56 Identities=18% Similarity=0.150 Sum_probs=46.4
Q ss_pred CeEEEEeCCCCchHHHHHHHHHH-----HhcCCCHHHHHHHHHHhCCCCcCCHHHHHHHHH
Q 023521 121 ACVLVHCMFGKNRSAAIVIAYLM-----KCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQE 176 (281)
Q Consensus 121 ~~VLVHC~~G~sRS~tvv~AYLm-----~~~g~sl~~A~~~Vr~~RP~i~pn~~f~~qL~~ 176 (281)
++|+|||.+|+||||++++...+ .....++.+++..+|..|+.+..+..++..+.+
T Consensus 248 ~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~~V~~lR~qR~~~Vqt~~QY~F~y~ 308 (323)
T PHA02746 248 GPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIVLKIRKQRHSSVFLPEQYAFCYK 308 (323)
T ss_pred CCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhcccccCCCHHHHHHHHH
Confidence 68999999999999998876443 234569999999999999999999987666553
No 30
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=98.38 E-value=2.1e-06 Score=71.84 Aligned_cols=104 Identities=19% Similarity=0.246 Sum_probs=74.0
Q ss_pred HHHHhCCCcEEEEcCCCCccccC-------CCce--EEe--ccCCC-----hhhHHHHHHHHHHHHHcCCeEEEEeCCCC
Q 023521 68 GLLKTQGISRVLNTVPSCQNLYK-------NSFT--YHC--LEDDK-----ILQFDDAIQFLEQCERDKACVLVHCMFGK 131 (281)
Q Consensus 68 ~~L~~~gIt~IInl~~~~~~~~~-------~~~~--y~~--vp~~~-----~~~f~~a~~fI~~~~~~g~~VLVHC~~G~ 131 (281)
+.-.+.|-+++|++......... .+++ +.+ .+++. ..+.+.+++|++++-+. ..+||||.+|+
T Consensus 26 e~~~rh~~t~mlsl~a~~t~~~~pa~~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~-apllIHC~aGI 104 (172)
T COG5350 26 ETAARHGPTHMLSLLAKGTYFHRPAVIAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRF-APLLIHCYAGI 104 (172)
T ss_pred HHHhhcCCceEEEeecccccccCccccchhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCccc-cceeeeecccc
Confidence 45567788999998654322211 1111 111 22221 34788999999998765 88999999999
Q ss_pred chHHHHH-HHHHHHhcCCCHHHHHHHHHHhCCCCcCCHHHHH
Q 023521 132 NRSAAIV-IAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQ 172 (281)
Q Consensus 132 sRS~tvv-~AYLm~~~g~sl~~A~~~Vr~~RP~i~pn~~f~~ 172 (281)
|||.+++ +|-|.-...+.-.+..+.++..+|.+.||+..+.
T Consensus 105 SRStA~A~i~a~ala~~~de~ela~~Lra~sp~atPN~Rlia 146 (172)
T COG5350 105 SRSTAAALIAALALAPDMDETELAERLRALSPYATPNPRLIA 146 (172)
T ss_pred ccchHHHHHHHHhhccccChHHHHHHHHhcCcccCCChhHHH
Confidence 9997654 3455666888999999999999999999998553
No 31
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=98.32 E-value=1.9e-06 Score=82.37 Aligned_cols=173 Identities=18% Similarity=0.206 Sum_probs=117.5
Q ss_pred cccccCCccccCCCCCCCCc-ccccccccCCCCceEeCCcEEEcCccccCCHHHHHhC--CCcEEEEcCCCCcc-----c
Q 023521 17 HKYEEGEVCGICGHRSASSA-EKTTTLQVSAFPSEILPDFLYLGSYDNASRSGLLKTQ--GISRVLNTVPSCQN-----L 88 (281)
Q Consensus 17 ~~~e~g~~~~~cg~~~~~~~-~~~~~~~~~~~p~eI~p~~LyLGs~~~a~~~~~L~~~--gIt~IInl~~~~~~-----~ 88 (281)
+.-.+.--|..-|..+...- ++.+.+....+...+.++. + .+........|+.+ .|--+||++..... .
T Consensus 6 ~lp~~w~~~p~~G~~~~~~rfi~~K~pL~~~~~~k~~~~~-~--~f~~~dl~~~l~~~~~~vgl~iDltnt~ryy~~~~~ 82 (393)
T KOG2386|consen 6 ELPPRWLDCPPVGAVIDDTRFIPFKTPLNSSYSTKTFPGS-Q--RFQPKDLFELLKEHNYKVGLKIDLTNTLRYYDKPEL 82 (393)
T ss_pred cCCcccccCCCCCCccccceEEEEecccCCCCCcCCCCCc-c--ccCHHHHHHHHHhcCceEEEEEeccceeeeeccccc
Confidence 44456667777776555332 2334566777888887732 2 22223334555544 46677787765432 2
Q ss_pred cCCCceEEeccC--------C-ChhhHHHH-HHHHHHHHHcCCeEEEEeCCCCchHHHHHHHHHHHhcCCCHHHHHHHHH
Q 023521 89 YKNSFTYHCLED--------D-KILQFDDA-IQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVK 158 (281)
Q Consensus 89 ~~~~~~y~~vp~--------~-~~~~f~~a-~~fI~~~~~~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~sl~~A~~~Vr 158 (281)
...++.|+.+.. + ....|.++ -.|++.....++-|+|||..|++|++-++++|||...+|+..+|+..+.
T Consensus 83 ~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcthG~NrtgyLI~~yL~~~~~~s~~~aik~f~ 162 (393)
T KOG2386|consen 83 EERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTKLDDELIGVHCTHGLNRTGYLICAYLADVGGYSSSEAIKRFA 162 (393)
T ss_pred cccceeEEEeccCCcccCCCccchHHHHHHHHHHHhcccCCCCEEEEeCCCcccccceeeeeeeeeccCccHHHHHHHHH
Confidence 334566766542 2 22344444 3466666667889999999999999999999999999999999999999
Q ss_pred HhCCCCcCCHHHHHHHHHHHHHHcCCCCCCCCCCC
Q 023521 159 ERRPSVNLTEDVHQQLQEYEQKIFGSVDGSNPTPL 193 (281)
Q Consensus 159 ~~RP~i~pn~~f~~qL~~~E~~L~~~~~~~~~~~~ 193 (281)
..|+...-....+..|...+.....-. ++.|.++
T Consensus 163 ~~r~~gi~k~dyi~~L~~~~~~~~p~~-vs~p~~~ 196 (393)
T KOG2386|consen 163 DARPPGIEKQDYIDALYSRYHDIFPFK-VSCPSMP 196 (393)
T ss_pred HhCCCccCchHHHHHHhhccccccccc-ccCCCCc
Confidence 999998888899999988777766433 3334444
No 32
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=98.32 E-value=2.4e-06 Score=80.01 Aligned_cols=54 Identities=20% Similarity=0.267 Sum_probs=46.1
Q ss_pred CeEEEEeCCCCchHHHHHHHHH-----HHhcCCCHHHHHHHHHHhCCCCcCCHHHHHHH
Q 023521 121 ACVLVHCMFGKNRSAAIVIAYL-----MKCKGWRLAQSHQWVKERRPSVNLTEDVHQQL 174 (281)
Q Consensus 121 ~~VLVHC~~G~sRS~tvv~AYL-----m~~~g~sl~~A~~~Vr~~RP~i~pn~~f~~qL 174 (281)
++|+|||.+|+||||++++..+ ......++.+++..+|..|+.+..+..++..+
T Consensus 230 ~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY~F~ 288 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEKIREQRHAGIMNFDDYLFI 288 (312)
T ss_pred CCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccCCHHHHHHH
Confidence 6899999999999999888764 33345699999999999999999999877666
No 33
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.29 E-value=9.3e-06 Score=65.40 Aligned_cols=107 Identities=14% Similarity=0.078 Sum_probs=74.2
Q ss_pred CCcEEEcCccccCCHHHHHhCCCcEEEEcCCCCcc------------ccCCCceEEeccCCChh-hHHHHHHHHHHHHHc
Q 023521 53 PDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQN------------LYKNSFTYHCLEDDKIL-QFDDAIQFLEQCERD 119 (281)
Q Consensus 53 p~~LyLGs~~~a~~~~~L~~~gIt~IInl~~~~~~------------~~~~~~~y~~vp~~~~~-~f~~a~~fI~~~~~~ 119 (281)
.+.|+++++....+...++.+|++.|||-.++.+. ....++.|+.+|+.... .=+++-.|-+..-+.
T Consensus 7 ~d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~f~~Al~ea 86 (130)
T COG3453 7 NDRLSVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGGITEADVEAFQRALDEA 86 (130)
T ss_pred ccceeecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCCCCHHHHHHHHHHHHHh
Confidence 34999999999999999999999999998765432 12346889999875322 222222233333345
Q ss_pred CCeEEEEeCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHhC
Q 023521 120 KACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERR 161 (281)
Q Consensus 120 g~~VLVHC~~G~sRS~tvv~AYLm~~~g~sl~~A~~~Vr~~R 161 (281)
+++||.||+.| .||-++=.--. ...||+.++..++-+...
T Consensus 87 egPVlayCrsG-tRs~~ly~~~~-~~~gm~~de~~a~g~a~G 126 (130)
T COG3453 87 EGPVLAYCRSG-TRSLNLYGLGE-LDGGMSRDEIEALGQAAG 126 (130)
T ss_pred CCCEEeeecCC-chHHHHHHHHH-HhcCCCHHHHHHHHHhhC
Confidence 79999999999 68855433323 567999988887766543
No 34
>PHA02738 hypothetical protein; Provisional
Probab=98.16 E-value=9e-06 Score=76.45 Aligned_cols=55 Identities=13% Similarity=0.131 Sum_probs=44.9
Q ss_pred CeEEEEeCCCCchHHHHHHHHH-----HHhcCCCHHHHHHHHHHhCCCCcCCHHHHHHHH
Q 023521 121 ACVLVHCMFGKNRSAAIVIAYL-----MKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQ 175 (281)
Q Consensus 121 ~~VLVHC~~G~sRS~tvv~AYL-----m~~~g~sl~~A~~~Vr~~RP~i~pn~~f~~qL~ 175 (281)
++|+|||.+|+||||++++.-. ......++.+++..+|..|+.+..+..++..+.
T Consensus 228 ~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~V~~lR~qR~~~vqt~~QY~F~y 287 (320)
T PHA02738 228 PPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSIVSSIRNQRYYSLFIPFQYFFCY 287 (320)
T ss_pred CCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHHHHHHHhhhhhccCCHHHHHHHH
Confidence 6899999999999998766553 234455899999999999999999998776544
No 35
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=98.03 E-value=3.1e-05 Score=69.21 Aligned_cols=106 Identities=20% Similarity=0.275 Sum_probs=79.1
Q ss_pred ceEeCCcEEEcCccccCCHHHHHhCCCcEEEEcCCCCcc------ccCCCceEEeccCCC-------------hhhHHHH
Q 023521 49 SEILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQN------LYKNSFTYHCLEDDK-------------ILQFDDA 109 (281)
Q Consensus 49 ~eI~p~~LyLGs~~~a~~~~~L~~~gIt~IInl~~~~~~------~~~~~~~y~~vp~~~-------------~~~f~~a 109 (281)
+-|.+ .||-++++...+..+|+.++++.||.+.++..+ +..+++.+.++.++. ...+..+
T Consensus 61 s~V~~-~lyRSg~P~~~NfsFL~~L~LksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~~~ 139 (249)
T KOG1572|consen 61 SMVDN-GLYRSGFPRPENFSFLKTLHLKSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPDHSIRKA 139 (249)
T ss_pred ccccc-ceeecCCCCccchHHHHHhhhheEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCCCCCChHHHHHHH
Confidence 34445 899999999999999999999999999987422 233567777765431 1234455
Q ss_pred HHHHHHHHHcCCeEEEEeCCCCchHHHHHHHHHHHhcCCCHHHHHHHHH
Q 023521 110 IQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVK 158 (281)
Q Consensus 110 ~~fI~~~~~~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~sl~~A~~~Vr 158 (281)
++++ ..+.+.++||||..|.-|+++||.+.- +..+|++.-.++.-+
T Consensus 140 l~~l--ld~~N~P~Lihc~rGkhRtg~lVgclR-klq~W~lssil~Ey~ 185 (249)
T KOG1572|consen 140 LKVL--LDKRNYPILIHCKRGKHRTGCLVGCLR-KLQNWSLSSILDEYL 185 (249)
T ss_pred HHHH--hcccCCceEEecCCCCcchhhhHHHHH-HHhccchhHHHHHHH
Confidence 5552 224578999999999999999998866 778999888777443
No 36
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=98.02 E-value=1.5e-05 Score=72.34 Aligned_cols=120 Identities=16% Similarity=0.225 Sum_probs=80.6
Q ss_pred ceEeCCcEEEcCccccCCHH--HHHhCCCcEEEEcCC--CCcc-ccCCC-ce---EEec-----c--CCChhhHHHHHHH
Q 023521 49 SEILPDFLYLGSYDNASRSG--LLKTQGISRVLNTVP--SCQN-LYKNS-FT---YHCL-----E--DDKILQFDDAIQF 112 (281)
Q Consensus 49 ~eI~p~~LyLGs~~~a~~~~--~L~~~gIt~IInl~~--~~~~-~~~~~-~~---y~~v-----p--~~~~~~f~~a~~f 112 (281)
..|.+.-+|.++.+...+.. ++...+|..++++.. .... .+..+ .. ...+ + .......+....+
T Consensus 48 ~~i~~~~~~Rs~~p~~~~~~~~~~~~~~l~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 127 (249)
T COG2365 48 LGIIPIIDYRSGQPVPVQPDPELLDALYLKTIINLRDESNTNVELYTDHLINWDKAAIIMFESYRSFPTREDAAERLVEL 127 (249)
T ss_pred ccccceeEcCCCCcccccCCccccccccccccccccccchhhhhhhhhhhhhhccccchhhhhhccCccchhhHHHHHHH
Confidence 44555567778887777766 777888888888764 1111 11111 10 1111 1 1122345566666
Q ss_pred HHHHHHcC-CeEEEEeCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCcCCH
Q 023521 113 LEQCERDK-ACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTE 168 (281)
Q Consensus 113 I~~~~~~g-~~VLVHC~~G~sRS~tvv~AYLm~~~g~sl~~A~~~Vr~~RP~i~pn~ 168 (281)
+...+..+ ++||+||.+|..|+|.+++.|++...++....+-++++..++......
T Consensus 128 ~~l~~~~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~ 184 (249)
T COG2365 128 LQLLADAENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERR 184 (249)
T ss_pred HHHHhhcccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhH
Confidence 66666665 999999999999999999999999888887788888888887665555
No 37
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=97.99 E-value=2.3e-05 Score=75.46 Aligned_cols=108 Identities=26% Similarity=0.427 Sum_probs=68.7
Q ss_pred HHHHhCCCcEEEEcCCCCcc----------------ccCC--CceEEeccCCChh-hHHHHHHHHHHHHH------cCCe
Q 023521 68 GLLKTQGISRVLNTVPSCQN----------------LYKN--SFTYHCLEDDKIL-QFDDAIQFLEQCER------DKAC 122 (281)
Q Consensus 68 ~~L~~~gIt~IInl~~~~~~----------------~~~~--~~~y~~vp~~~~~-~f~~a~~fI~~~~~------~g~~ 122 (281)
..++.+|+-.|-|+...... .... ++.|..+||...+ +=--+++|+++... +-+.
T Consensus 374 ~~~e~~G~~~v~~v~E~~t~dY~LR~l~vs~~~~g~~~R~I~~yh~~tWPDHGvP~dPg~vLnFLe~V~~rq~~l~~Agp 453 (600)
T KOG0790|consen 374 GALEEYGVMRVRNVKESDTHDYTLRELKVSKLGNGNLEREIWHYHYLTWPDHGVPSDPGGVLNFLEEVNHRQESLMDAGP 453 (600)
T ss_pred cchhhcCceEEEeccccccccceehheeeccccCCcchhhhhhhheeecccCCCcCCccHHHHHHHHhhhhhccccccCc
Confidence 45567777777776442110 1111 2344455555433 22344566665543 3579
Q ss_pred EEEEeCCCCchHHHHH-HHHHH---HhcC----CCHHHHHHHHHHhCCCCcCCHHHHHHHH
Q 023521 123 VLVHCMFGKNRSAAIV-IAYLM---KCKG----WRLAQSHQWVKERRPSVNLTEDVHQQLQ 175 (281)
Q Consensus 123 VLVHC~~G~sRS~tvv-~AYLm---~~~g----~sl~~A~~~Vr~~RP~i~pn~~f~~qL~ 175 (281)
|.|||.+|+||+++++ +-.|| ++.| +++...+++||..|..+.-++.+++.+.
T Consensus 454 IvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsqRSGmVQTEaQYkFiY 514 (600)
T KOG0790|consen 454 IVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQRSGMVQTEAQYKFIY 514 (600)
T ss_pred EEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHHhcchhhhHHhHHHHH
Confidence 9999999999999954 33343 3444 4799999999999998888888666543
No 38
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=97.90 E-value=0.00022 Score=69.96 Aligned_cols=126 Identities=19% Similarity=0.200 Sum_probs=92.4
Q ss_pred eCCcEEEcCccccCCH----HHHHhCCCcEEEEcCCCCc--cccCCCceEEeccCCC--------hhhHHHHHHHHHHHH
Q 023521 52 LPDFLYLGSYDNASRS----GLLKTQGISRVLNTVPSCQ--NLYKNSFTYHCLEDDK--------ILQFDDAIQFLEQCE 117 (281)
Q Consensus 52 ~p~~LyLGs~~~a~~~----~~L~~~gIt~IInl~~~~~--~~~~~~~~y~~vp~~~--------~~~f~~a~~fI~~~~ 117 (281)
.+.+||+|........ ..-....+..||++..... ........|+.++... ...+.+++.|+...+
T Consensus 292 ~~~~i~ig~~~~~l~~~~~~~~~~~~~~~~vI~~s~~~~~~~~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~L 371 (451)
T PF04179_consen 292 GTTGIYIGKISSNLAISKAQLPDLESEFDCVINCSESPTPKESWPKSPKYLHLPIPSSKKGSRDLRKALPKICSFVRSHL 371 (451)
T ss_pred CCCCeEEeccCCccccchhhccccCCCcCEEEEcCCCcccccccCCCceEEeCcCCCCcccHHHHHHHHHHHHHHHHHHh
Confidence 3458999987752211 1113456889999986543 2334556677776542 247889999999998
Q ss_pred Hc--CCeEEEEeCCCCchHHHHHHHHHHHhcCCC----------------HHHHHHHHHHhCCCCcCCHHHHHHHHHH
Q 023521 118 RD--KACVLVHCMFGKNRSAAIVIAYLMKCKGWR----------------LAQSHQWVKERRPSVNLTEDVHQQLQEY 177 (281)
Q Consensus 118 ~~--g~~VLVHC~~G~sRS~tvv~AYLm~~~g~s----------------l~~A~~~Vr~~RP~i~pn~~f~~qL~~~ 177 (281)
.+ +.+|||+|..|...|++|++|.|++.+... ..+-+.+|...+|.+.|....++++..|
T Consensus 372 ~~~~~~~iLV~C~sGkDlSVgVaLaILc~~Fd~~g~~~~~~~~~~itK~~IR~rL~~I~~~~p~aNPSRaTLqsVNsF 449 (451)
T PF04179_consen 372 SSDPGKPILVCCDSGKDLSVGVALAILCKLFDDDGNFRDSFERPSITKDDIRQRLAWIISSRPDANPSRATLQSVNSF 449 (451)
T ss_pred cccCCCcEEEEcCCcchHHHHHHHHHHHHhcCcccCcccccccCCCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 88 899999999999999999999999876542 3356777778888888888888887765
No 39
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.80 E-value=3.1e-05 Score=70.35 Aligned_cols=90 Identities=12% Similarity=0.149 Sum_probs=63.2
Q ss_pred ceEEeccCCChhhHHHHHHHHHHHHH---cCCeEEEEeCCCCchHHHHHHHHHHHhc-CCC-------------HHHHHH
Q 023521 93 FTYHCLEDDKILQFDDAIQFLEQCER---DKACVLVHCMFGKNRSAAIVIAYLMKCK-GWR-------------LAQSHQ 155 (281)
Q Consensus 93 ~~y~~vp~~~~~~f~~a~~fI~~~~~---~g~~VLVHC~~G~sRS~tvv~AYLm~~~-g~s-------------l~~A~~ 155 (281)
|.|+...|-..+...+..++++-... ++++++|||.||+||+|++++.-.+... .-+ ..+.+.
T Consensus 188 f~y~nW~D~~~p~i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~D~if~iV~ 267 (302)
T COG5599 188 FQYINWVDFNVPDIRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQDLIFQIVL 267 (302)
T ss_pred EEecCccccCCcCHHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhhhHHHHHHH
Confidence 33443344344567777888877662 5799999999999999998776544422 212 346677
Q ss_pred HHHHhCCCCcCCHHHHHHHHHHHHHHc
Q 023521 156 WVKERRPSVNLTEDVHQQLQEYEQKIF 182 (281)
Q Consensus 156 ~Vr~~RP~i~pn~~f~~qL~~~E~~L~ 182 (281)
.+|+.|-.+.-|..|+..|...-..|.
T Consensus 268 ~LRsQRmkmVQn~~Qf~flY~~~~~l~ 294 (302)
T COG5599 268 SLRSQRMKMVQNKTQFKFLYDAFLELN 294 (302)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 788888778888888888887666665
No 40
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=97.75 E-value=7.7e-05 Score=78.15 Aligned_cols=72 Identities=21% Similarity=0.351 Sum_probs=52.8
Q ss_pred hHHHHHHHHH---HHHHc-CCeEEEEeCCCCchHHHHHHH----HHHH-hcCCCHHHHHHHHHHhCCCCcCCHHHHHHHH
Q 023521 105 QFDDAIQFLE---QCERD-KACVLVHCMFGKNRSAAIVIA----YLMK-CKGWRLAQSHQWVKERRPSVNLTEDVHQQLQ 175 (281)
Q Consensus 105 ~f~~a~~fI~---~~~~~-g~~VLVHC~~G~sRS~tvv~A----YLm~-~~g~sl~~A~~~Vr~~RP~i~pn~~f~~qL~ 175 (281)
+.+..++||+ ..++. +-+|||||.+|+||||+++++ ||+. ...+..-+.+..+|..|-.+..+..+++.+.
T Consensus 1044 D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~~mVQT~~QYkFVy 1123 (1144)
T KOG0792|consen 1044 DPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQRAMMVQTLSQYKFVY 1123 (1144)
T ss_pred ChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhccchHHhhHHH
Confidence 3444455555 44444 558999999999999997654 4444 2345788999999999999999999777654
Q ss_pred H
Q 023521 176 E 176 (281)
Q Consensus 176 ~ 176 (281)
+
T Consensus 1124 e 1124 (1144)
T KOG0792|consen 1124 E 1124 (1144)
T ss_pred H
Confidence 4
No 41
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=97.68 E-value=6.4e-05 Score=63.10 Aligned_cols=54 Identities=19% Similarity=0.370 Sum_probs=40.2
Q ss_pred CCCceEEeccCCC-----hhhHHHHHHHHHHHHHcCCeEEEEeCCCCchHHHHHHHHHHH
Q 023521 90 KNSFTYHCLEDDK-----ILQFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMK 144 (281)
Q Consensus 90 ~~~~~y~~vp~~~-----~~~f~~a~~fI~~~~~~g~~VLVHC~~G~sRS~tvv~AYLm~ 144 (281)
..++.|+++|+.+ ...|++.++|+... -++..+.+||.+|.|||.+..+.|.|-
T Consensus 90 ~~g~~Y~Ripitd~~~P~~~~iD~fi~~v~~~-p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 90 GNGLRYYRIPITDHQAPDPEDIDAFINFVKSL-PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HTT-EEEEEEE-TTS---HHHHHHHHHHHHTS--TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCCcCCCCHHHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899998643 34788888888887 567899999999999999988888764
No 42
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.48 E-value=0.00037 Score=66.84 Aligned_cols=85 Identities=14% Similarity=0.166 Sum_probs=57.8
Q ss_pred ceEEeccCCChh-hHHHHHHHHHH--H--HHcCCeEEEEeCCCCchHHHHHHHH-HHHh--c---CCCHHHHHHHHHHhC
Q 023521 93 FTYHCLEDDKIL-QFDDAIQFLEQ--C--ERDKACVLVHCMFGKNRSAAIVIAY-LMKC--K---GWRLAQSHQWVKERR 161 (281)
Q Consensus 93 ~~y~~vp~~~~~-~f~~a~~fI~~--~--~~~g~~VLVHC~~G~sRS~tvv~AY-Lm~~--~---g~sl~~A~~~Vr~~R 161 (281)
+.|..+|+...+ ....++.++.. . ....++++|||.+|+||+|++++.- .+.. . .....+.+..+|..|
T Consensus 267 ~~~~~WPd~~~p~~~~~~l~~~~~~~~~~~~~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~qR 346 (415)
T KOG0789|consen 267 YHYINWPDHGAPDSVKSILPLLRQSVLELRPKQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQR 346 (415)
T ss_pred EeeCCCccccCCcchHHHHHHHHhhhhhhcCCCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHHh
Confidence 344445555443 36677777753 2 2235899999999999999998654 2222 2 235888888999999
Q ss_pred CCCcCCHHHHHHHHHH
Q 023521 162 PSVNLTEDVHQQLQEY 177 (281)
Q Consensus 162 P~i~pn~~f~~qL~~~ 177 (281)
+.+..+..|+..+..-
T Consensus 347 ~~~vqt~~Qy~f~~~~ 362 (415)
T KOG0789|consen 347 PGAVQSPLQYLFIYAA 362 (415)
T ss_pred hhcccchhHHHHHHHH
Confidence 9888888876555543
No 43
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=97.40 E-value=0.00091 Score=55.78 Aligned_cols=101 Identities=22% Similarity=0.242 Sum_probs=51.5
Q ss_pred ceEeCCcEEEcCccccCCHHHHHhCCCcEEEEcCCCCccccCCCceEEeccCC----ChhhHHHHHHHHHHHHHc---CC
Q 023521 49 SEILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQNLYKNSFTYHCLEDD----KILQFDDAIQFLEQCERD---KA 121 (281)
Q Consensus 49 ~eI~p~~LyLGs~~~a~~~~~L~~~gIt~IInl~~~~~~~~~~~~~y~~vp~~----~~~~f~~a~~fI~~~~~~---g~ 121 (281)
.||++|+||.+.... .-+...=.|-.++..+ +.|...=.| .+..+..-+.-|++.++. .+
T Consensus 1 iE~i~drLyf~~~~~-----~p~~~~~~~yF~iD~~--------l~Y~~F~~DFGPlnL~~lyrfc~~l~~~L~~~~~~~ 67 (141)
T PF14671_consen 1 IEIIPDRLYFASLRN-----KPKSTPNTHYFSIDDE--------LVYENFYADFGPLNLAQLYRFCCKLNKKLKSPELKK 67 (141)
T ss_dssp ---SSSSEEEEE-SS---------BTTEEEEE-TTT--------S----SSS------HHHHHHHHHHHHHHHH-GGGTT
T ss_pred CCCCCCcEEEEEeCC-----CCCCCCCcEEEEeCCe--------EEEecccCcCCCccHHHHHHHHHHHHHHHcCHHhcC
Confidence 478999999998753 1111122222222221 122222111 123344445555555554 57
Q ss_pred eEEEEeCCCCc--h--HHHHHHHHHHHhcCCCHHHHHHHHHHhCC
Q 023521 122 CVLVHCMFGKN--R--SAAIVIAYLMKCKGWRLAQSHQWVKERRP 162 (281)
Q Consensus 122 ~VLVHC~~G~s--R--S~tvv~AYLm~~~g~sl~~A~~~Vr~~RP 162 (281)
+.+|||...-. | ++.++.||+|-..+|+.++|++-+...-|
T Consensus 68 k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~p 112 (141)
T PF14671_consen 68 KKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQP 112 (141)
T ss_dssp SEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT-
T ss_pred CeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCC
Confidence 88888887655 3 36799999999999999999999887754
No 44
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=96.91 E-value=0.0056 Score=58.06 Aligned_cols=95 Identities=20% Similarity=0.240 Sum_probs=61.9
Q ss_pred CCCceEEeccCCChh-hHHHHHHHHH---HHHH-cCCeEEEEeCCCCchHHHHHHHH-HHHhcCC----CHHHHHHHHHH
Q 023521 90 KNSFTYHCLEDDKIL-QFDDAIQFLE---QCER-DKACVLVHCMFGKNRSAAIVIAY-LMKCKGW----RLAQSHQWVKE 159 (281)
Q Consensus 90 ~~~~~y~~vp~~~~~-~f~~a~~fI~---~~~~-~g~~VLVHC~~G~sRS~tvv~AY-Lm~~~g~----sl~~A~~~Vr~ 159 (281)
.-.|.|..+||-..+ .-+..+.|+. +... ..+.++|||.+|+||+||.++-- |++..+- +.-..+..+|.
T Consensus 252 ir~f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~ 331 (374)
T KOG0791|consen 252 IRHFHYTAWPDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRS 331 (374)
T ss_pred eEEEEEeeccccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhh
Confidence 345677777765433 2223333333 2222 36799999999999999987654 4443332 45667777888
Q ss_pred hCCCCcCCHHHHHHHHHHH-HHHcCC
Q 023521 160 RRPSVNLTEDVHQQLQEYE-QKIFGS 184 (281)
Q Consensus 160 ~RP~i~pn~~f~~qL~~~E-~~L~~~ 184 (281)
.|+.+..+..|+-.|.+-- ..|.++
T Consensus 332 ~R~~mVqte~Qyvfl~~c~~~~l~~~ 357 (374)
T KOG0791|consen 332 ARMLMVQTEDQYVFLHQCVLESLQGK 357 (374)
T ss_pred ccccccchHHHHHHHHHHHHHHHhCC
Confidence 8999999999999988643 334443
No 45
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.40 E-value=0.0086 Score=63.64 Aligned_cols=79 Identities=16% Similarity=0.232 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHc----CCeEEEEeCCCCchHHHH-----HHHHHHHhcCCCHHHHHHHHHHhCCCCcCCHHHHHHHHH-
Q 023521 107 DDAIQFLEQCERD----KACVLVHCMFGKNRSAAI-----VIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQE- 176 (281)
Q Consensus 107 ~~a~~fI~~~~~~----g~~VLVHC~~G~sRS~tv-----v~AYLm~~~g~sl~~A~~~Vr~~RP~i~pn~~f~~qL~~- 176 (281)
-..++|+.+.+.- .|+++|||.+|+||||+. .+..++.....+...-+..+|..|..+.-+..++-.+.+
T Consensus 713 t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR~~mVQt~eQYiFi~~A 792 (1087)
T KOG4228|consen 713 TGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQRNNMVQTEEQYIFIHEA 792 (1087)
T ss_pred hHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhccccccccHHHHHHHHHH
Confidence 4667888877653 499999999999999994 344455555668888888888889888878776655442
Q ss_pred -HHHHHcCCC
Q 023521 177 -YEQKIFGSV 185 (281)
Q Consensus 177 -~E~~L~~~~ 185 (281)
.|.-+.+..
T Consensus 793 llE~~~~G~T 802 (1087)
T KOG4228|consen 793 LLEACLCGDT 802 (1087)
T ss_pred HHHHHhcCCc
Confidence 344444443
No 46
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=95.78 E-value=0.028 Score=57.35 Aligned_cols=67 Identities=21% Similarity=0.422 Sum_probs=45.6
Q ss_pred HHHHHHHHHHH----cCCeEEEEeCCCCchHHHH-----HHHHHHH-hcCCCHHHHHHHHHHhCCCCcCCHHHHHHH
Q 023521 108 DAIQFLEQCER----DKACVLVHCMFGKNRSAAI-----VIAYLMK-CKGWRLAQSHQWVKERRPSVNLTEDVHQQL 174 (281)
Q Consensus 108 ~a~~fI~~~~~----~g~~VLVHC~~G~sRS~tv-----v~AYLm~-~~g~sl~~A~~~Vr~~RP~i~pn~~f~~qL 174 (281)
..++|-.+..+ +...|+|||..|-|||++- |++-|.+ .+..+....++++|..||.+.-+..+.+..
T Consensus 911 slLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRDQR~GmVaTkdQFef~ 987 (1004)
T KOG0793|consen 911 SLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRDQRPGMVATKDQFEFA 987 (1004)
T ss_pred HHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhhcCCcceeehhhhHHH
Confidence 34455444332 3567999999999999983 3333333 123478889999999999887776655543
No 47
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=93.54 E-value=0.23 Score=53.17 Aligned_cols=57 Identities=23% Similarity=0.350 Sum_probs=45.1
Q ss_pred CCeEEEEeCCCCchHHHHHHHHH----HHhcCC-CHHHHHHHHHHhCCCCcCCHHHHHHHHH
Q 023521 120 KACVLVHCMFGKNRSAAIVIAYL----MKCKGW-RLAQSHQWVKERRPSVNLTEDVHQQLQE 176 (281)
Q Consensus 120 g~~VLVHC~~G~sRS~tvv~AYL----m~~~g~-sl~~A~~~Vr~~RP~i~pn~~f~~qL~~ 176 (281)
.+++.|||..|.+||++.+++-+ |+..+. +.-+++..+|..||.+.-..++++.+.+
T Consensus 1018 ~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~~rp~mv~t~~QY~fcYd 1079 (1087)
T KOG4228|consen 1018 DGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRFQRPGMVDTSDQYQFCYD 1079 (1087)
T ss_pred CCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhhcCccccCcHHHHHHHHH
Confidence 68999999999999998766554 333444 7888999999999988888877776654
No 48
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.47 E-value=0.2 Score=50.46 Aligned_cols=37 Identities=35% Similarity=0.595 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHcCCeEEEEeCCCCchHHHHHH-HHHH
Q 023521 107 DDAIQFLEQCERDKACVLVHCMFGKNRSAAIVI-AYLM 143 (281)
Q Consensus 107 ~~a~~fI~~~~~~g~~VLVHC~~G~sRS~tvv~-AYLm 143 (281)
..|+...++....+..|||||..|..|++-+++ |.||
T Consensus 361 aga~~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA~Ll 398 (717)
T KOG4471|consen 361 AGAVRIADKVESESRSVLVHCSDGWDRTAQLVSLAMLL 398 (717)
T ss_pred HHHHHHHHHHhcCCceEEEEcCCCccchHHHHHHHHHH
Confidence 345555666666788899999999999998764 4444
No 49
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=90.71 E-value=1.1 Score=34.21 Aligned_cols=29 Identities=34% Similarity=0.485 Sum_probs=19.9
Q ss_pred HcCCeEEEEeCCCCchHHHHHHHHHHHhcCCC
Q 023521 118 RDKACVLVHCMFGKNRSAAIVIAYLMKCKGWR 149 (281)
Q Consensus 118 ~~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~s 149 (281)
..+..|+|+|..| .||... +.+| +..|++
T Consensus 59 ~~~~~ivvyC~~G-~rs~~a-~~~L-~~~G~~ 87 (101)
T cd01518 59 LKGKKVLMYCTGG-IRCEKA-SAYL-KERGFK 87 (101)
T ss_pred cCCCEEEEECCCc-hhHHHH-HHHH-HHhCCc
Confidence 4668899999998 688643 3344 556764
No 50
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=87.58 E-value=0.36 Score=30.31 Aligned_cols=23 Identities=48% Similarity=0.957 Sum_probs=19.0
Q ss_pred Cccccccccccc-cCCccccCCCC
Q 023521 9 PCSVCGHYHKYE-EGEVCGICGHR 31 (281)
Q Consensus 9 ~~~~~~~y~~~e-~g~~~~~cg~~ 31 (281)
-|.+||+.+.-+ .-+.|.+||+.
T Consensus 4 ~C~~CG~i~~g~~~p~~CP~Cg~~ 27 (34)
T cd00729 4 VCPVCGYIHEGEEAPEKCPICGAP 27 (34)
T ss_pred ECCCCCCEeECCcCCCcCcCCCCc
Confidence 599999998765 46899999985
No 51
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=87.04 E-value=1.3 Score=42.45 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=18.4
Q ss_pred HHHHHcCCeEEEEeCCCCchHHHHHH
Q 023521 114 EQCERDKACVLVHCMFGKNRSAAIVI 139 (281)
Q Consensus 114 ~~~~~~g~~VLVHC~~G~sRS~tvv~ 139 (281)
+....+|..|||||..|..|++-|+.
T Consensus 225 ~~l~~~~~~Vlvh~~dGwDrt~q~~s 250 (353)
T PF06602_consen 225 DLLHDEGSSVLVHCSDGWDRTSQLSS 250 (353)
T ss_dssp HHHHTT--EEEEECTTSSSHHHHHHH
T ss_pred HHhhccCceEEEEcCCCCcccHHHHH
Confidence 33335789999999999999966543
No 52
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=86.25 E-value=2.4 Score=32.70 Aligned_cols=64 Identities=14% Similarity=0.038 Sum_probs=34.3
Q ss_pred cEEEEcCCCCccccCCCceEEeccCCChhhHHHHHHHHHHHH-HcCCeEEEEeCCCCchHHHHHHHHHHHhcCC
Q 023521 76 SRVLNTVPSCQNLYKNSFTYHCLEDDKILQFDDAIQFLEQCE-RDKACVLVHCMFGKNRSAAIVIAYLMKCKGW 148 (281)
Q Consensus 76 t~IInl~~~~~~~~~~~~~y~~vp~~~~~~f~~a~~fI~~~~-~~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~ 148 (281)
..|||+...... .--++|.-....+.+..+.+.... ..+..|+|||..|. ||. . ++.+++..|+
T Consensus 27 ~~liDvR~~~e~------~~ghIpgainip~~~l~~~~~~l~~~~~~~ivv~C~~G~-rs~-~-a~~~L~~~G~ 91 (109)
T cd01533 27 LVVLDGRRFDEY------RKMTIPGSVSCPGAELVLRVGELAPDPRTPIVVNCAGRT-RSI-I-GAQSLINAGL 91 (109)
T ss_pred cEEEeCCCHHHH------hcCcCCCceeCCHHHHHHHHHhcCCCCCCeEEEECCCCc-hHH-H-HHHHHHHCCC
Confidence 358888754321 112334332223344444444443 24578999999996 763 3 3444566776
No 53
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=83.20 E-value=0.8 Score=28.41 Aligned_cols=23 Identities=39% Similarity=0.775 Sum_probs=18.8
Q ss_pred Cccccccccccc-cCCccccCCCC
Q 023521 9 PCSVCGHYHKYE-EGEVCGICGHR 31 (281)
Q Consensus 9 ~~~~~~~y~~~e-~g~~~~~cg~~ 31 (281)
-|.+||+.+.-+ +...|.+||..
T Consensus 3 ~C~~CGy~y~~~~~~~~CP~Cg~~ 26 (33)
T cd00350 3 VCPVCGYIYDGEEAPWVCPVCGAP 26 (33)
T ss_pred ECCCCCCEECCCcCCCcCcCCCCc
Confidence 489999986655 78899999874
No 54
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=81.21 E-value=3.5 Score=31.25 Aligned_cols=29 Identities=34% Similarity=0.408 Sum_probs=20.1
Q ss_pred HHcCCeEEEEeCCCCchHHHHHHHHHHHhcCC
Q 023521 117 ERDKACVLVHCMFGKNRSAAIVIAYLMKCKGW 148 (281)
Q Consensus 117 ~~~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~ 148 (281)
..+++.++|+|..|. || ..++.+|.. .|+
T Consensus 58 ~~~~~~ivv~C~~G~-rS-~~aa~~L~~-~G~ 86 (110)
T COG0607 58 LPDDDPIVVYCASGV-RS-AAAAAALKL-AGF 86 (110)
T ss_pred cCCCCeEEEEeCCCC-Ch-HHHHHHHHH-cCC
Confidence 566799999999994 77 444455554 444
No 55
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=79.23 E-value=2.8 Score=42.47 Aligned_cols=31 Identities=32% Similarity=0.551 Sum_probs=23.5
Q ss_pred HHHHHHHHHHH-cCCeEEEEeCCCCchHHHHH
Q 023521 108 DAIQFLEQCER-DKACVLVHCMFGKNRSAAIV 138 (281)
Q Consensus 108 ~a~~fI~~~~~-~g~~VLVHC~~G~sRS~tvv 138 (281)
++..+|.+++. +|-.|||||..|..|+..|+
T Consensus 331 ~~a~~ia~~l~~~~~sVlvhcsdGwDrT~qV~ 362 (573)
T KOG1089|consen 331 KAAAEIAKCLSSEGASVLVHCSDGWDRTCQVS 362 (573)
T ss_pred HHHHHHHHHHHhCCCeEEEEccCCcchhHHHH
Confidence 44455666665 56899999999999997654
No 56
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=77.05 E-value=7.2 Score=29.15 Aligned_cols=29 Identities=17% Similarity=0.070 Sum_probs=18.4
Q ss_pred cCCeEEEEeCCCCchHHHHHHHHHHHhcCC
Q 023521 119 DKACVLVHCMFGKNRSAAIVIAYLMKCKGW 148 (281)
Q Consensus 119 ~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~ 148 (281)
.+.+|+|+|..|...++..+ +..++..|.
T Consensus 49 ~~~~ivl~c~~G~~~~s~~a-a~~L~~~G~ 77 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRA-ARRLSELGY 77 (92)
T ss_pred CCCeEEEEeCCCCchHHHHH-HHHHHHcCc
Confidence 36789999999854333444 444455665
No 57
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=75.79 E-value=7.8 Score=29.30 Aligned_cols=28 Identities=21% Similarity=0.450 Sum_probs=18.6
Q ss_pred cCCeEEEEeCCCCchHHHHHHHHHHHhcCCC
Q 023521 119 DKACVLVHCMFGKNRSAAIVIAYLMKCKGWR 149 (281)
Q Consensus 119 ~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~s 149 (281)
.+.+|+|+|..| .||... +. ++...|++
T Consensus 57 ~~~~vv~~c~~g-~rs~~~-~~-~l~~~G~~ 84 (101)
T cd01528 57 PDKDIVVLCHHG-GRSMQV-AQ-WLLRQGFE 84 (101)
T ss_pred CCCeEEEEeCCC-chHHHH-HH-HHHHcCCc
Confidence 478999999998 576433 33 34446764
No 58
>PLN02160 thiosulfate sulfurtransferase
Probab=74.02 E-value=5.8 Score=32.41 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=20.9
Q ss_pred HHcCCeEEEEeCCCCchHHHHHHHHHHHhcCCC
Q 023521 117 ERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWR 149 (281)
Q Consensus 117 ~~~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~s 149 (281)
+..+.+|+|||..| .||... +.++...|++
T Consensus 78 ~~~~~~IivyC~sG-~RS~~A--a~~L~~~G~~ 107 (136)
T PLN02160 78 LNPADDILVGCQSG-ARSLKA--TTELVAAGYK 107 (136)
T ss_pred cCCCCcEEEECCCc-HHHHHH--HHHHHHcCCC
Confidence 34678999999999 687644 3444556764
No 59
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=71.40 E-value=19 Score=28.19 Aligned_cols=29 Identities=34% Similarity=0.384 Sum_probs=19.3
Q ss_pred HcCCeEEEEeCCCCchHHHHHHHHHHHhcCCC
Q 023521 118 RDKACVLVHCMFGKNRSAAIVIAYLMKCKGWR 149 (281)
Q Consensus 118 ~~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~s 149 (281)
..+.+|+|+|..| .||... +.+++..|..
T Consensus 62 ~~~~~ivv~C~~G-~rs~~a--a~~L~~~G~~ 90 (117)
T cd01522 62 GKDRPVLLLCRSG-NRSIAA--AEAAAQAGFT 90 (117)
T ss_pred CCCCeEEEEcCCC-ccHHHH--HHHHHHCCCC
Confidence 4578899999998 466543 3334556653
No 60
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=67.15 E-value=3.7 Score=25.47 Aligned_cols=24 Identities=33% Similarity=0.756 Sum_probs=17.0
Q ss_pred ccccccccccc--cCCccccCCCCCC
Q 023521 10 CSVCGHYHKYE--EGEVCGICGHRSA 33 (281)
Q Consensus 10 ~~~~~~y~~~e--~g~~~~~cg~~~~ 33 (281)
|+.||.--..+ +.-.|..|||++.
T Consensus 3 C~~Cg~~~~~~~~~~irC~~CG~RIl 28 (32)
T PF03604_consen 3 CGECGAEVELKPGDPIRCPECGHRIL 28 (32)
T ss_dssp ESSSSSSE-BSTSSTSSBSSSS-SEE
T ss_pred CCcCCCeeEcCCCCcEECCcCCCeEE
Confidence 77888877776 5567889999864
No 61
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=66.41 E-value=11 Score=29.35 Aligned_cols=30 Identities=20% Similarity=0.018 Sum_probs=20.7
Q ss_pred HcCCeEEEEeCCCCchHHHHHHHHHHHhcCCC
Q 023521 118 RDKACVLVHCMFGKNRSAAIVIAYLMKCKGWR 149 (281)
Q Consensus 118 ~~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~s 149 (281)
..+..|+|+|..| ++.++.++. +++..|++
T Consensus 77 ~~~~~vv~~c~~g-~~~a~~~~~-~l~~~G~~ 106 (122)
T cd01448 77 SNDDTVVVYDDGG-GFFAARAWW-TLRYFGHE 106 (122)
T ss_pred CCCCEEEEECCCC-CccHHHHHH-HHHHcCCC
Confidence 3578999999998 666566544 44556764
No 62
>PRK05320 rhodanese superfamily protein; Provisional
Probab=65.33 E-value=14 Score=33.81 Aligned_cols=28 Identities=18% Similarity=0.193 Sum_probs=19.1
Q ss_pred cCCeEEEEeCCCCchHHHHHHHHHHHhcCCC
Q 023521 119 DKACVLVHCMFGKNRSAAIVIAYLMKCKGWR 149 (281)
Q Consensus 119 ~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~s 149 (281)
++++|+++|..| .|| ..++++|.. .|++
T Consensus 174 kdk~IvvyC~~G-~Rs-~~Aa~~L~~-~Gf~ 201 (257)
T PRK05320 174 AGKTVVSFCTGG-IRC-EKAAIHMQE-VGID 201 (257)
T ss_pred CCCeEEEECCCC-HHH-HHHHHHHHH-cCCc
Confidence 568999999999 466 344556543 5653
No 63
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=65.02 E-value=13 Score=29.10 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=16.7
Q ss_pred cCCeEEEEeCCCCchHHHHHHHHHHHhcCC
Q 023521 119 DKACVLVHCMFGKNRSAAIVIAYLMKCKGW 148 (281)
Q Consensus 119 ~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~ 148 (281)
.+..|+|+|..| .||... +..| ...|+
T Consensus 59 ~~~~IVlyC~~G-~rS~~a-a~~L-~~~G~ 85 (104)
T PRK10287 59 KNDTVKLYCNAG-RQSGQA-KEIL-SEMGY 85 (104)
T ss_pred CCCeEEEEeCCC-hHHHHH-HHHH-HHcCC
Confidence 456799999988 455444 3333 34565
No 64
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=64.15 E-value=9.7 Score=28.65 Aligned_cols=29 Identities=28% Similarity=0.330 Sum_probs=19.0
Q ss_pred HcCCeEEEEeCCCCchHHHHHHHHHHHhcCCC
Q 023521 118 RDKACVLVHCMFGKNRSAAIVIAYLMKCKGWR 149 (281)
Q Consensus 118 ~~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~s 149 (281)
..+++|+|+|..|. ||.. ++. .++..|++
T Consensus 59 ~~~~~ivv~C~~G~-rs~~-aa~-~L~~~G~~ 87 (100)
T cd01523 59 PDDQEVTVICAKEG-SSQF-VAE-LLAERGYD 87 (100)
T ss_pred CCCCeEEEEcCCCC-cHHH-HHH-HHHHcCce
Confidence 35689999999994 7633 333 34556764
No 65
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=63.65 E-value=13 Score=25.64 Aligned_cols=26 Identities=12% Similarity=0.119 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHh
Q 023521 135 AAIVIAYLMKCKGWRLAQSHQWVKER 160 (281)
Q Consensus 135 ~tvv~AYLm~~~g~sl~~A~~~Vr~~ 160 (281)
..-+.+.||..+|++.++|+++++..
T Consensus 15 I~~AkgiLm~~~g~~e~~A~~~Lr~~ 40 (56)
T PF03861_consen 15 IEQAKGILMARYGLSEDEAYRLLRRQ 40 (56)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 44577889999999999999999875
No 66
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=63.63 E-value=9.9 Score=32.07 Aligned_cols=30 Identities=13% Similarity=0.049 Sum_probs=22.7
Q ss_pred HcCCeEEEEeCCCCchHHHHHHHHHHHhcCCC
Q 023521 118 RDKACVLVHCMFGKNRSAAIVIAYLMKCKGWR 149 (281)
Q Consensus 118 ~~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~s 149 (281)
.++.+|+|+|..|..||.. ++++++..|++
T Consensus 114 ~~d~~IVvYC~~G~~~S~~--aa~~L~~~G~~ 143 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWN--AAKRALAYGYS 143 (162)
T ss_pred CCCCEEEEEECCCCHHHHH--HHHHHHhcCCc
Confidence 3568999999998777765 56677777764
No 67
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=63.04 E-value=14 Score=30.32 Aligned_cols=24 Identities=29% Similarity=0.188 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHcCCeEEEEeCC
Q 023521 106 FDDAIQFLEQCERDKACVLVHCMF 129 (281)
Q Consensus 106 f~~a~~fI~~~~~~g~~VLVHC~~ 129 (281)
..-+++.++++.++|.+|+|+|..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d 38 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPD 38 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SS
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCC
Confidence 577899999999999999999965
No 68
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=62.82 E-value=25 Score=27.67 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=19.0
Q ss_pred HcCCeEEEEeCCCCchHHHHHHHHHHHhcCC
Q 023521 118 RDKACVLVHCMFGKNRSAAIVIAYLMKCKGW 148 (281)
Q Consensus 118 ~~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~ 148 (281)
..++.|+|+|..|. ||... +..++..|+
T Consensus 70 ~~~~~ivv~C~~G~-rs~~a--a~~L~~~G~ 97 (122)
T cd01526 70 DKDSPIYVVCRRGN-DSQTA--VRKLKELGL 97 (122)
T ss_pred CCCCcEEEECCCCC-cHHHH--HHHHHHcCC
Confidence 45688999999995 76533 334555666
No 69
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=59.47 E-value=29 Score=29.77 Aligned_cols=69 Identities=20% Similarity=0.205 Sum_probs=44.7
Q ss_pred CCceEeCCcEEEcCccccCCHHH--HHhCCCcEEEE-cCCCCccccCCCceEEeccCCChhhHHHHHHHHHHHHHcCC--
Q 023521 47 FPSEILPDFLYLGSYDNASRSGL--LKTQGISRVLN-TVPSCQNLYKNSFTYHCLEDDKILQFDDAIQFLEQCERDKA-- 121 (281)
Q Consensus 47 ~p~eI~p~~LyLGs~~~a~~~~~--L~~~gIt~IIn-l~~~~~~~~~~~~~y~~vp~~~~~~f~~a~~fI~~~~~~g~-- 121 (281)
-|+.++| .+|+-+.... +.+. |++.||+.||- ...... +.......++..++++++.+.++
T Consensus 13 ~p~l~~P-~l~V~si~~I-~~~~~~Lk~~Gik~li~DkDNTL~------------~~~~~~i~~~~~~~~~~l~~~~~~~ 78 (168)
T PF09419_consen 13 NPSLLLP-HLYVPSIRDI-DFEANHLKKKGIKALIFDKDNTLT------------PPYEDEIPPEYAEWLNELKKQFGKD 78 (168)
T ss_pred CccccCC-CEEcCChhhC-CcchhhhhhcCceEEEEcCCCCCC------------CCCcCcCCHHHHHHHHHHHHHCCCC
Confidence 4677788 8999877654 5566 99999999972 222110 11112233466778888887765
Q ss_pred eEEEEeCC
Q 023521 122 CVLVHCMF 129 (281)
Q Consensus 122 ~VLVHC~~ 129 (281)
+|+|-...
T Consensus 79 ~v~IvSNs 86 (168)
T PF09419_consen 79 RVLIVSNS 86 (168)
T ss_pred eEEEEECC
Confidence 58888875
No 70
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=58.62 E-value=12 Score=31.38 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHcCCeEEEEeCC
Q 023521 108 DAIQFLEQCERDKACVLVHCMF 129 (281)
Q Consensus 108 ~a~~fI~~~~~~g~~VLVHC~~ 129 (281)
-++.+++++.+.|.+|||+|..
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~d 38 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCED 38 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeCC
Confidence 7899999999999999999954
No 71
>PRK01415 hypothetical protein; Validated
Probab=58.45 E-value=20 Score=32.63 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=19.9
Q ss_pred HcCCeEEEEeCCCCchHHHHHHHHHHHhcCCC
Q 023521 118 RDKACVLVHCMFGKNRSAAIVIAYLMKCKGWR 149 (281)
Q Consensus 118 ~~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~s 149 (281)
.++++|+++|..| -|| ..++++|. ..|+.
T Consensus 169 ~k~k~Iv~yCtgG-iRs-~kAa~~L~-~~Gf~ 197 (247)
T PRK01415 169 LKGKKIAMVCTGG-IRC-EKSTSLLK-SIGYD 197 (247)
T ss_pred cCCCeEEEECCCC-hHH-HHHHHHHH-HcCCC
Confidence 4578999999999 476 44455554 46664
No 72
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=58.04 E-value=30 Score=26.39 Aligned_cols=64 Identities=17% Similarity=0.169 Sum_probs=32.8
Q ss_pred cEEEEcCCCCccccCCCceEEeccCCChhhHHHHHHHHHHHHHcCCeEEEEeCCCCchHHHHHHHHHHHhcCCC
Q 023521 76 SRVLNTVPSCQNLYKNSFTYHCLEDDKILQFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWR 149 (281)
Q Consensus 76 t~IInl~~~~~~~~~~~~~y~~vp~~~~~~f~~a~~fI~~~~~~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~s 149 (281)
..|||+...... .--+++.-....+....+++.. +..+..|+|+|..|. ||.. ++.+++..|++
T Consensus 21 ~~ivDvR~~~e~------~~ghi~gA~~ip~~~l~~~~~~-~~~~~~ivv~c~~g~-~s~~--a~~~L~~~G~~ 84 (108)
T PRK00162 21 AVLVDIRDPQSF------AMGHAPGAFHLTNDSLGAFMRQ-ADFDTPVMVMCYHGN-SSQG--AAQYLLQQGFD 84 (108)
T ss_pred CEEEEcCCHHHH------hcCCCCCCeECCHHHHHHHHHh-cCCCCCEEEEeCCCC-CHHH--HHHHHHHCCch
Confidence 468888754321 1112332211122333344444 345688999999985 5532 23345556664
No 73
>KOG4080 consensus Mitochondrial ribosomal protein L32 [Translation, ribosomal structure and biogenesis]
Probab=57.92 E-value=3.3 Score=35.39 Aligned_cols=20 Identities=35% Similarity=0.986 Sum_probs=18.4
Q ss_pred cCCccccccccccccCCccccC
Q 023521 7 ENPCSVCGHYHKYEEGEVCGIC 28 (281)
Q Consensus 7 ~~~~~~~~~y~~~e~g~~~~~c 28 (281)
-|.|-.|||||. .+..|+.|
T Consensus 93 l~~CP~CGh~k~--a~~LC~~C 112 (176)
T KOG4080|consen 93 LNTCPACGHIKP--AHTLCDYC 112 (176)
T ss_pred cccCcccCcccc--ccccHHHH
Confidence 478999999998 89999999
No 74
>smart00400 ZnF_CHCC zinc finger.
Probab=57.46 E-value=13 Score=25.49 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=24.2
Q ss_pred EEEeCCCCchHHHHHHHHHHHhcCCCHHHHHHHH
Q 023521 124 LVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWV 157 (281)
Q Consensus 124 LVHC~~G~sRS~tvv~AYLm~~~g~sl~~A~~~V 157 (281)
..||.+ -++.+- ++.++|+.+|+++.+|++++
T Consensus 23 ~~~Cf~-cg~gGd-~i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFG-CGAGGN-VISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeC-CCCCCC-HHHHHHHHHCcCHHHHHHHh
Confidence 478874 345554 47888999999999999875
No 75
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=57.02 E-value=25 Score=29.69 Aligned_cols=30 Identities=10% Similarity=0.166 Sum_probs=25.4
Q ss_pred CChhhHHHHHHHHHHHHHcCCeEEEEeCCC
Q 023521 101 DKILQFDDAIQFLEQCERDKACVLVHCMFG 130 (281)
Q Consensus 101 ~~~~~f~~a~~fI~~~~~~g~~VLVHC~~G 130 (281)
+..+.+.-+++.++++.++|.+|+|+|...
T Consensus 10 ~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~ 39 (154)
T PRK06646 10 SDELLLKSILLLIEKCYYSDLKSVILTADA 39 (154)
T ss_pred CCChHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 345678889999999999999999999653
No 76
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=56.46 E-value=7.5 Score=22.63 Aligned_cols=24 Identities=25% Similarity=0.632 Sum_probs=18.0
Q ss_pred CCccccccccccccCCccccCCCCC
Q 023521 8 NPCSVCGHYHKYEEGEVCGICGHRS 32 (281)
Q Consensus 8 ~~~~~~~~y~~~e~g~~~~~cg~~~ 32 (281)
--|..||+ ...++-..|..||+.+
T Consensus 3 ~~Cp~Cg~-~~~~~~~fC~~CG~~L 26 (26)
T PF13248_consen 3 MFCPNCGA-EIDPDAKFCPNCGAKL 26 (26)
T ss_pred CCCcccCC-cCCcccccChhhCCCC
Confidence 45888998 4455778899999864
No 77
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=55.32 E-value=46 Score=28.73 Aligned_cols=59 Identities=19% Similarity=0.155 Sum_probs=43.3
Q ss_pred CCHHHHHhCCCcEEE-EcCCCCccccCCCceEEeccCCChhhHHHHHHHHHHHHHcCCeEEEEeCCCCchHH
Q 023521 65 SRSGLLKTQGISRVL-NTVPSCQNLYKNSFTYHCLEDDKILQFDDAIQFLEQCERDKACVLVHCMFGKNRSA 135 (281)
Q Consensus 65 ~~~~~L~~~gIt~II-nl~~~~~~~~~~~~~y~~vp~~~~~~f~~a~~fI~~~~~~g~~VLVHC~~G~sRS~ 135 (281)
-..+.|++.||+.|| |+..+. |+.+....=+++.+++++....|-+|+|-...--.|-+
T Consensus 18 i~~~~L~~~Gikgvi~DlDNTL------------v~wd~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~ 77 (175)
T COG2179 18 ITPDILKAHGIKGVILDLDNTL------------VPWDNPDATPELRAWLAELKEAGIKVVVVSNNKESRVA 77 (175)
T ss_pred CCHHHHHHcCCcEEEEeccCce------------ecccCCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHH
Confidence 456899999999997 343331 34444445578899999999999999999986655543
No 78
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=55.26 E-value=85 Score=24.08 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHHHcCCeEEEEeCCCCchHHHHHHHHHHHhcCCCHH---------HHHHHHHHhC
Q 023521 104 LQFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLA---------QSHQWVKERR 161 (281)
Q Consensus 104 ~~f~~a~~fI~~~~~~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~sl~---------~A~~~Vr~~R 161 (281)
..+..|.++|+...++|.++++.-..+ +||..-.+..| +..|+... .+..++++..
T Consensus 14 ~~ipga~e~l~~L~~~g~~~~~lTNns-~~s~~~~~~~L-~~~Gi~~~~~~i~ts~~~~~~~l~~~~ 78 (101)
T PF13344_consen 14 EPIPGAVEALDALRERGKPVVFLTNNS-SRSREEYAKKL-KKLGIPVDEDEIITSGMAAAEYLKEHK 78 (101)
T ss_dssp EE-TTHHHHHHHHHHTTSEEEEEES-S-SS-HHHHHHHH-HHTTTT--GGGEEEHHHHHHHHHHHHT
T ss_pred CcCcCHHHHHHHHHHcCCCEEEEeCCC-CCCHHHHHHHH-HhcCcCCCcCEEEChHHHHHHHHHhcC
Confidence 467889999999999988888887665 78888888888 65777643 4566666643
No 79
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=54.92 E-value=27 Score=27.79 Aligned_cols=31 Identities=26% Similarity=0.437 Sum_probs=21.6
Q ss_pred HHcCCeEEEEeCCCCchHHHHHHHHHHHhcCCC
Q 023521 117 ERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWR 149 (281)
Q Consensus 117 ~~~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~s 149 (281)
+..+..|+|+|..|-.||.. ++++++..|.+
T Consensus 83 i~~~~~vvvyC~~~G~rs~~--a~~~L~~~G~~ 113 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQS--LAWLLESLGID 113 (128)
T ss_pred cCCCCeEEEEeCCCCccHHH--HHHHHHHcCCc
Confidence 34578999999854456653 34888877874
No 80
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=54.72 E-value=28 Score=28.73 Aligned_cols=27 Identities=22% Similarity=0.060 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHHHHHcCCeEEEEeCC
Q 023521 103 ILQFDDAIQFLEQCERDKACVLVHCMF 129 (281)
Q Consensus 103 ~~~f~~a~~fI~~~~~~g~~VLVHC~~ 129 (281)
.....-+++.++++.++|.+|+|+|..
T Consensus 12 ~~~~~~~c~L~~ka~~~g~rv~I~~~d 38 (142)
T PRK05728 12 SALEALLCELAEKALRAGWRVLVQCED 38 (142)
T ss_pred hhHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 345667899999999999999999955
No 81
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=54.31 E-value=31 Score=25.61 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=18.5
Q ss_pred cCCeEEEEeCCCCchHHHHHHHHHHHhcCCC
Q 023521 119 DKACVLVHCMFGKNRSAAIVIAYLMKCKGWR 149 (281)
Q Consensus 119 ~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~s 149 (281)
++.+|+|+|..|. ||.. ++.+| +..|++
T Consensus 55 ~~~~iv~~c~~G~-rs~~-aa~~L-~~~G~~ 82 (95)
T cd01534 55 RGARIVLADDDGV-RADM-TASWL-AQMGWE 82 (95)
T ss_pred CCCeEEEECCCCC-hHHH-HHHHH-HHcCCE
Confidence 3678999999984 6643 33444 656664
No 82
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=52.87 E-value=35 Score=25.04 Aligned_cols=28 Identities=29% Similarity=0.462 Sum_probs=18.1
Q ss_pred HcCCeEEEEeCCCCchHHHHHHHHHHHhcCC
Q 023521 118 RDKACVLVHCMFGKNRSAAIVIAYLMKCKGW 148 (281)
Q Consensus 118 ~~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~ 148 (281)
..+.+|+|+|..|. ||. .++.+++..|+
T Consensus 54 ~~~~~ivv~c~~g~-~s~--~a~~~l~~~G~ 81 (96)
T cd01444 54 DRDRPVVVYCYHGN-SSA--QLAQALREAGF 81 (96)
T ss_pred CCCCCEEEEeCCCC-hHH--HHHHHHHHcCC
Confidence 46789999999763 432 23455555665
No 83
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=52.28 E-value=1.1e+02 Score=27.12 Aligned_cols=15 Identities=7% Similarity=0.237 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHcCC
Q 023521 170 VHQQLQEYEQKIFGS 184 (281)
Q Consensus 170 f~~qL~~~E~~L~~~ 184 (281)
..+.|.+||+.+.+.
T Consensus 124 l~~~~~~f~elVkk~ 138 (205)
T PF12238_consen 124 LYKAFNTFEELVKKK 138 (205)
T ss_pred HHHHHHHHHHHhhhc
Confidence 456677888766544
No 84
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=51.65 E-value=7.4 Score=25.85 Aligned_cols=27 Identities=26% Similarity=0.561 Sum_probs=20.8
Q ss_pred Cccccccccccc--cCCccccCCCCCCCC
Q 023521 9 PCSVCGHYHKYE--EGEVCGICGHRSASS 35 (281)
Q Consensus 9 ~~~~~~~y~~~e--~g~~~~~cg~~~~~~ 35 (281)
-|+.||+--..+ ++-.|..|||++.--
T Consensus 4 ~C~~Cg~~~~~~~~~~irC~~CG~rIlyK 32 (44)
T smart00659 4 ICGECGRENEIKSKDVVRCRECGYRILYK 32 (44)
T ss_pred ECCCCCCEeecCCCCceECCCCCceEEEE
Confidence 488999865555 677899999998744
No 85
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=51.61 E-value=6.4 Score=25.65 Aligned_cols=28 Identities=36% Similarity=0.712 Sum_probs=18.9
Q ss_pred Ccccccccc---ccccCC-ccccCCCCCCCCc
Q 023521 9 PCSVCGHYH---KYEEGE-VCGICGHRSASSA 36 (281)
Q Consensus 9 ~~~~~~~y~---~~e~g~-~~~~cg~~~~~~~ 36 (281)
-|..||... .+.+|+ +|..||..+....
T Consensus 2 ~Cp~Cg~~~~~~D~~~g~~vC~~CG~Vl~e~~ 33 (43)
T PF08271_consen 2 KCPNCGSKEIVFDPERGELVCPNCGLVLEENI 33 (43)
T ss_dssp SBTTTSSSEEEEETTTTEEEETTT-BBEE-TT
T ss_pred CCcCCcCCceEEcCCCCeEECCCCCCEeeccc
Confidence 378888855 344677 8999999887543
No 86
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=51.59 E-value=36 Score=26.29 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=17.5
Q ss_pred cCCeEEEEeCCCCchHHHHHHHHHHHhcCC
Q 023521 119 DKACVLVHCMFGKNRSAAIVIAYLMKCKGW 148 (281)
Q Consensus 119 ~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~ 148 (281)
.+.+|+|+|..|. ||... +.+++..|+
T Consensus 57 ~~~~vvlyC~~G~-rS~~a--a~~L~~~G~ 83 (101)
T TIGR02981 57 KNDTVKLYCNAGR-QSGMA--KDILLDMGY 83 (101)
T ss_pred CCCeEEEEeCCCH-HHHHH--HHHHHHcCC
Confidence 4568999999994 66444 334444665
No 87
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=51.48 E-value=31 Score=25.74 Aligned_cols=34 Identities=18% Similarity=0.335 Sum_probs=20.9
Q ss_pred HHHHcCCeEEEEeCCCCchHHH---HHHHHHHHhcCCC
Q 023521 115 QCERDKACVLVHCMFGKNRSAA---IVIAYLMKCKGWR 149 (281)
Q Consensus 115 ~~~~~g~~VLVHC~~G~sRS~t---vv~AYLm~~~g~s 149 (281)
.....+..|+|+|..|.. +.. +.++|++...|++
T Consensus 62 ~~~~~~~~iv~yc~~~~~-~~~~~~~~~~~~l~~~g~~ 98 (113)
T PF00581_consen 62 KKIDKDKDIVFYCSSGWR-SGSAAAARVAWILKKLGFK 98 (113)
T ss_dssp HGSTTTSEEEEEESSSCH-HHHHHHHHHHHHHHHTTTS
T ss_pred ccccccccceeeeecccc-cchhHHHHHHHHHHHcCCC
Confidence 333567789999977754 333 2334556666764
No 88
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=50.37 E-value=50 Score=25.43 Aligned_cols=18 Identities=11% Similarity=0.163 Sum_probs=13.1
Q ss_pred CCeEEEEeCCCCchHHHH
Q 023521 120 KACVLVHCMFGKNRSAAI 137 (281)
Q Consensus 120 g~~VLVHC~~G~sRS~tv 137 (281)
...|+|||..|-.||+..
T Consensus 66 ~~~iv~~C~~~g~rs~~a 83 (113)
T cd01443 66 VKLAIFYCGSSQGRGPRA 83 (113)
T ss_pred CCEEEEECCCCCcccHHH
Confidence 468999999865676543
No 89
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=50.20 E-value=54 Score=25.11 Aligned_cols=61 Identities=15% Similarity=0.212 Sum_probs=36.4
Q ss_pred CCeEEEEeCCCCchHHHHHHHHH---HHhcCCC-------HHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHcC
Q 023521 120 KACVLVHCMFGKNRSAAIVIAYL---MKCKGWR-------LAQSHQWVKERRPSVNLTEDVHQQLQEYEQKIFG 183 (281)
Q Consensus 120 g~~VLVHC~~G~sRS~tvv~AYL---m~~~g~s-------l~~A~~~Vr~~RP~i~pn~~f~~qL~~~E~~L~~ 183 (281)
..+|||-|.+|++ |..++ --+ ..++|++ +.++-..+.. --.+...+.+...+.++++....
T Consensus 3 ~~~ILl~C~~G~s-SS~l~-~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~-~Dvill~pqi~~~~~~i~~~~~~ 73 (95)
T TIGR00853 3 ETNILLLCAAGMS-TSLLV-NKMNKAAEEYGVPVKIAAGSYGAAGEKLDD-ADVVLLAPQVAYMLPDLKKETDK 73 (95)
T ss_pred ccEEEEECCCchh-HHHHH-HHHHHHHHHCCCcEEEEEecHHHHHhhcCC-CCEEEECchHHHHHHHHHHHhhh
Confidence 3689999999998 44433 222 2345663 2332222222 23556688888888888877644
No 90
>PF14746 WASH-7_C: WASH complex subunit 7, C-terminal
Probab=49.66 E-value=13 Score=31.96 Aligned_cols=63 Identities=17% Similarity=0.165 Sum_probs=44.0
Q ss_pred EEeccCCChhhHHHHHHHHHHHHHcCCeEEEEeCCCCchHHHHHHHHHHHhcC-CCHHHHHHHHHHhC
Q 023521 95 YHCLEDDKILQFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCKG-WRLAQSHQWVKERR 161 (281)
Q Consensus 95 y~~vp~~~~~~f~~a~~fI~~~~~~g~~VLVHC~~G~sRS~tvv~AYLm~~~g-~sl~~A~~~Vr~~R 161 (281)
|..||.-...+.+-++.-=++..++++.=.++|..|. ++.+||+.+-.+ |..-+++.|.++.+
T Consensus 49 y~IvPaLtln~ve~~i~~Kekl~Kk~k~~~~ftDDGF----a~GvAyiLklLdQ~~~FdsLhWF~Sv~ 112 (170)
T PF14746_consen 49 YLIVPALTLNYVEYMIQCKEKLFKKNKEGASFTDDGF----AMGVAYILKLLDQYDEFDSLHWFESVK 112 (170)
T ss_pred hhhhhHHHHHHHHHHHHhHHHHHhcCCCCCeeecccH----HHHHHHHHHHhcchhhhhhcccHHHHH
Confidence 3344444444555555555566667676778899998 899999988664 47778888888776
No 91
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=48.56 E-value=45 Score=29.15 Aligned_cols=37 Identities=22% Similarity=0.106 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHHcCCeEEEEeCCCCchHHHHHHHHHH
Q 023521 104 LQFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLM 143 (281)
Q Consensus 104 ~~f~~a~~fI~~~~~~g~~VLVHC~~G~sRS~tvv~AYLm 143 (281)
..++++++.|.+++.++++|++. |.|+|++++..+-+
T Consensus 25 ~~i~~a~~~l~~~l~~~~rI~~~---G~GgSa~~A~~~a~ 61 (196)
T PRK10886 25 DAISRAAMTLVQSLLNGNKILCC---GNGTSAANAQHFAA 61 (196)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEE---ECcHHHHHHHHHHH
Confidence 56888899999999999999987 88889776654443
No 92
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=47.42 E-value=23 Score=27.29 Aligned_cols=35 Identities=20% Similarity=0.554 Sum_probs=24.4
Q ss_pred EEEeCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 023521 124 LVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKER 160 (281)
Q Consensus 124 LVHC~~G~sRS~tvv~AYLm~~~g~sl~~A~~~Vr~~ 160 (281)
+.||.+ -+..+-+ +.++|+..++++.+|++++.+.
T Consensus 54 ~~~Cf~-Cg~~Gd~-i~~v~~~~~~~f~eAv~~l~~~ 88 (97)
T PF01807_consen 54 RFKCFG-CGKGGDV-IDFVMKYEGCSFKEAVKWLAEE 88 (97)
T ss_dssp EEEETT-T--EE-H-HHHHHHHHT--HHHHHHHHHHH
T ss_pred eEEECC-CCCCCcH-HhHHHHHhCCCHHHHHHHHHHH
Confidence 688985 4666644 7788999999999999998765
No 93
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=47.32 E-value=19 Score=32.97 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=22.8
Q ss_pred CCCCchHHHHHHHHHHHhcCCCHHHHHHH
Q 023521 128 MFGKNRSAAIVIAYLMKCKGWRLAQSHQW 156 (281)
Q Consensus 128 ~~G~sRS~tvv~AYLm~~~g~sl~~A~~~ 156 (281)
-=|+|||++.+.+-++. |++-++|.++
T Consensus 159 ~PGiSRSG~Ti~~~l~~--G~~r~~A~~f 185 (259)
T PF02673_consen 159 IPGISRSGATITAGLLL--GLDREEAARF 185 (259)
T ss_pred CCCcChHHHHHHHHHHC--CCCHHHHHHH
Confidence 46999999999987776 8988888775
No 94
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=45.05 E-value=32 Score=25.86 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=19.9
Q ss_pred cCCeEEEEeCCCCchHHHHHHHHHHHhcCCC
Q 023521 119 DKACVLVHCMFGKNRSAAIVIAYLMKCKGWR 149 (281)
Q Consensus 119 ~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~s 149 (281)
.+..|+|+|..|. ||. .+++++...|+.
T Consensus 65 ~~~~ivv~c~~g~-~s~--~~~~~l~~~G~~ 92 (106)
T cd01519 65 KDKELIFYCKAGV-RSK--AAAELARSLGYE 92 (106)
T ss_pred CCCeEEEECCCcH-HHH--HHHHHHHHcCCc
Confidence 4678999999985 653 345666767763
No 95
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=44.84 E-value=33 Score=32.23 Aligned_cols=44 Identities=16% Similarity=0.251 Sum_probs=27.7
Q ss_pred cCCeEEEEeCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCcCCHHHHHHHHHH
Q 023521 119 DKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEY 177 (281)
Q Consensus 119 ~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~sl~~A~~~Vr~~RP~i~pn~~f~~qL~~~ 177 (281)
++++|+|||..| .||. .+++||.. .|++ ....+.-++..++.++
T Consensus 170 kdk~IvvyC~~G-~Rs~-~aa~~L~~-~Gf~------------~V~~L~GGi~~w~~~~ 213 (314)
T PRK00142 170 KDKKVVMYCTGG-IRCE-KASAWMKH-EGFK------------EVYQLEGGIITYGEDP 213 (314)
T ss_pred CcCeEEEECCCC-cHHH-HHHHHHHH-cCCC------------cEEEecchHHHHHHhh
Confidence 568999999999 4773 44555554 6663 1234455666666554
No 96
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=44.39 E-value=31 Score=25.65 Aligned_cols=29 Identities=10% Similarity=-0.025 Sum_probs=19.1
Q ss_pred HcCCeEEEEeCCCCchHHHHHHHHHHHhcCCC
Q 023521 118 RDKACVLVHCMFGKNRSAAIVIAYLMKCKGWR 149 (281)
Q Consensus 118 ~~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~s 149 (281)
..+.+|+|+|..| .||.. ++.+| +..|.+
T Consensus 54 ~~~~~ivv~c~~g-~~s~~-~~~~l-~~~G~~ 82 (96)
T cd01529 54 GRATRYVLTCDGS-LLARF-AAQEL-LALGGK 82 (96)
T ss_pred CCCCCEEEEeCCh-HHHHH-HHHHH-HHcCCC
Confidence 4567899999877 57644 34444 556663
No 97
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=43.88 E-value=28 Score=25.87 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=19.3
Q ss_pred HcCCeEEEEeCCCCchHHHHHHHHHHHhcCC
Q 023521 118 RDKACVLVHCMFGKNRSAAIVIAYLMKCKGW 148 (281)
Q Consensus 118 ~~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~ 148 (281)
..+.+|+|+|..| .||. .++++++..|+
T Consensus 59 ~~~~~ivv~c~~g-~~s~--~~~~~l~~~G~ 86 (103)
T cd01447 59 AEDKPFVFYCASG-WRSA--LAGKTLQDMGL 86 (103)
T ss_pred CCCCeEEEEcCCC-CcHH--HHHHHHHHcCh
Confidence 4578999999988 4663 33455666665
No 98
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=43.75 E-value=21 Score=33.03 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=22.1
Q ss_pred CCCchHHHHHHHHHHHhcCCCHHHHHHH
Q 023521 129 FGKNRSAAIVIAYLMKCKGWRLAQSHQW 156 (281)
Q Consensus 129 ~G~sRS~tvv~AYLm~~~g~sl~~A~~~ 156 (281)
=|+|||++.+.|-|+. |++-++|.++
T Consensus 166 PGiSRSG~TI~a~l~~--G~~r~~Aa~f 191 (276)
T PRK12554 166 PGVSRSGATIIAGLLL--GLTREAAARF 191 (276)
T ss_pred cCCCCchHHHHHHHHc--CCCHHHHHHH
Confidence 5999999998887776 9988888764
No 99
>PF14206 Cys_rich_CPCC: Cysteine-rich CPCC
Probab=43.28 E-value=13 Score=27.82 Aligned_cols=22 Identities=45% Similarity=1.109 Sum_probs=18.7
Q ss_pred CCccccccccccccCC----ccccCC
Q 023521 8 NPCSVCGHYHKYEEGE----VCGICG 29 (281)
Q Consensus 8 ~~~~~~~~y~~~e~g~----~~~~cg 29 (281)
-+|-.||+|.-.++++ .|.+|+
T Consensus 2 ~~CPCCg~~Tl~~~~~~~ydIC~VC~ 27 (78)
T PF14206_consen 2 YPCPCCGYYTLEERGEGTYDICPVCF 27 (78)
T ss_pred ccCCCCCcEEeccCCCcCceECCCCC
Confidence 3799999999988877 888885
No 100
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=43.09 E-value=22 Score=32.49 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=22.0
Q ss_pred CCCchHHHHHHHHHHHhcCCCHHHHHHH
Q 023521 129 FGKNRSAAIVIAYLMKCKGWRLAQSHQW 156 (281)
Q Consensus 129 ~G~sRS~tvv~AYLm~~~g~sl~~A~~~ 156 (281)
=|+|||++.+.|-|+. |++-++|.++
T Consensus 160 PGiSRSG~TI~a~l~~--G~~r~~Aa~f 185 (255)
T TIGR00753 160 PGVSRSGSTISGGLFI--GLNRKAAAEF 185 (255)
T ss_pred cCCCCchHHHHHHHHc--CCCHHHHHHH
Confidence 5999999999887776 8888888774
No 101
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=42.36 E-value=21 Score=25.29 Aligned_cols=24 Identities=33% Similarity=0.880 Sum_probs=19.0
Q ss_pred CccccccccccccCCccccCCCCCCCC
Q 023521 9 PCSVCGHYHKYEEGEVCGICGHRSASS 35 (281)
Q Consensus 9 ~~~~~~~y~~~e~g~~~~~cg~~~~~~ 35 (281)
-|..||.|.-- |.|.+||-..-..
T Consensus 7 kC~~cg~YTLk---e~Cp~CG~~t~~~ 30 (59)
T COG2260 7 KCPKCGRYTLK---EKCPVCGGDTKVP 30 (59)
T ss_pred cCcCCCceeec---ccCCCCCCccccC
Confidence 47889999983 8999998776653
No 102
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=41.31 E-value=25 Score=32.43 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.1
Q ss_pred CCCchHHHHHHHHHHHhcCCCHHHHHHH
Q 023521 129 FGKNRSAAIVIAYLMKCKGWRLAQSHQW 156 (281)
Q Consensus 129 ~G~sRS~tvv~AYLm~~~g~sl~~A~~~ 156 (281)
=|+|||++.+.+-|+. |++-++|.++
T Consensus 164 PGiSRSG~TI~~~l~~--G~~r~~Aa~f 189 (268)
T PRK00281 164 PGTSRSGATISGGLLL--GLSREAAAEF 189 (268)
T ss_pred CCCCccHHHHHHHHHc--CCCHHHHHHH
Confidence 6999999999887776 8988888764
No 103
>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed
Probab=41.09 E-value=25 Score=24.68 Aligned_cols=27 Identities=30% Similarity=0.886 Sum_probs=22.1
Q ss_pred ccCCccccccccccccCCccccCCCCCCCC
Q 023521 6 RENPCSVCGHYHKYEEGEVCGICGHRSASS 35 (281)
Q Consensus 6 ~~~~~~~~~~y~~~e~g~~~~~cg~~~~~~ 35 (281)
+-.-|..||-|.- .+.|..||..+...
T Consensus 4 ~mr~C~~CgvYTL---k~~CP~CG~~t~~~ 30 (56)
T PRK13130 4 KIRKCPKCGVYTL---KEICPVCGGKTKNP 30 (56)
T ss_pred cceECCCCCCEEc---cccCcCCCCCCCCC
Confidence 4456999999998 88999999877654
No 104
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=40.19 E-value=86 Score=24.02 Aligned_cols=20 Identities=25% Similarity=0.542 Sum_probs=13.6
Q ss_pred cCCeEEEEeCCCCchHHHHH
Q 023521 119 DKACVLVHCMFGKNRSAAIV 138 (281)
Q Consensus 119 ~g~~VLVHC~~G~sRS~tvv 138 (281)
....|+|||..+-.|+...+
T Consensus 61 ~~~~iv~yC~~~~~r~~~aa 80 (113)
T cd01531 61 KKDTVVFHCALSQVRGPSAA 80 (113)
T ss_pred CCCeEEEEeecCCcchHHHH
Confidence 34689999984445775543
No 105
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=39.67 E-value=86 Score=25.25 Aligned_cols=63 Identities=19% Similarity=0.413 Sum_probs=37.7
Q ss_pred eEeCCcEEEcCccccCCH--HHHHhCCCcEEEEcCCCCccccCCCceEEeccCCChhhHHHHHHHHHHHHHcCCeEEEEe
Q 023521 50 EILPDFLYLGSYDNASRS--GLLKTQGISRVLNTVPSCQNLYKNSFTYHCLEDDKILQFDDAIQFLEQCERDKACVLVHC 127 (281)
Q Consensus 50 eI~p~~LyLGs~~~a~~~--~~L~~~gIt~IInl~~~~~~~~~~~~~y~~vp~~~~~~f~~a~~fI~~~~~~g~~VLVHC 127 (281)
.+.| .+.+|..+..... ++++..|+..+ ..|+.+.-+|+.|++++.+ ..-..|+|-+
T Consensus 34 g~~P-d~iiGDfDSi~~~~~~~~~~~~~~~~------------------~~p~kD~TD~e~Al~~~~~--~~~~~i~v~G 92 (123)
T PF04263_consen 34 GIKP-DLIIGDFDSISPEVLEFYKSKGVEII------------------HFPEKDYTDLEKALEYAIE--QGPDEIIVLG 92 (123)
T ss_dssp TT---SEEEC-SSSS-HHHHHHHHHCTTEEE------------------EE-STTS-HHHHHHHHHHH--TTTSEEEEES
T ss_pred CCCC-CEEEecCCCCChHHHHHHHhhcccee------------------cccccccCHHHHHHHHHHH--CCCCEEEEEe
Confidence 4456 6888888776652 44455655544 4555567789999999844 2345788888
Q ss_pred CCCCchH
Q 023521 128 MFGKNRS 134 (281)
Q Consensus 128 ~~G~sRS 134 (281)
..| ||-
T Consensus 93 a~G-gR~ 98 (123)
T PF04263_consen 93 ALG-GRF 98 (123)
T ss_dssp -SS-SSH
T ss_pred cCC-CcH
Confidence 888 676
No 106
>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins. Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=39.62 E-value=34 Score=26.79 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=28.7
Q ss_pred HcCCeEEEEeCCCCchHHHHHHHHHHHhcCCC-HHHHHHHHH
Q 023521 118 RDKACVLVHCMFGKNRSAAIVIAYLMKCKGWR-LAQSHQWVK 158 (281)
Q Consensus 118 ~~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~s-l~~A~~~Vr 158 (281)
+..++|+=||..| +-|+.||+.+...+ -.||+.+-.
T Consensus 22 ~~~~tv~~hcftG-----sdVVdWLv~~~~v~~r~EAl~las 58 (99)
T cd04445 22 EKDKKVFNHCFTG-----SCVIDWLVSNQSVRNRQEGLMLAS 58 (99)
T ss_pred HHhhccccceecc-----cHHHHHHHHhhcccchHHHHHHHH
Confidence 3458999999988 67899999988884 778876543
No 107
>PRK13938 phosphoheptose isomerase; Provisional
Probab=39.38 E-value=76 Score=27.70 Aligned_cols=39 Identities=21% Similarity=0.060 Sum_probs=29.9
Q ss_pred hhhHHHHHHHHHHHHHcCCeEEEEeCCCCchHHHHHHHHHHH
Q 023521 103 ILQFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMK 144 (281)
Q Consensus 103 ~~~f~~a~~fI~~~~~~g~~VLVHC~~G~sRS~tvv~AYLm~ 144 (281)
...+.++.+.+.+++++|++|+|. |.|+|+.++...-++
T Consensus 28 ~~~~~~~a~~~~~~l~~g~rI~i~---G~G~S~~~A~~fa~~ 66 (196)
T PRK13938 28 LEAARAIGDRLIAGYRAGARVFMC---GNGGSAADAQHFAAE 66 (196)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHHHHHHHH
Confidence 456788888888889999999987 788887766554444
No 108
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=38.75 E-value=50 Score=31.84 Aligned_cols=13 Identities=38% Similarity=0.649 Sum_probs=11.0
Q ss_pred HcCCeEEEEeCCC
Q 023521 118 RDKACVLVHCMFG 130 (281)
Q Consensus 118 ~~g~~VLVHC~~G 130 (281)
.+|..||.||.+|
T Consensus 165 ~dg~~ILThcnsg 177 (363)
T PRK05772 165 NDGDTVLTQCNAG 177 (363)
T ss_pred CCCCEEEEecCCc
Confidence 3678899999987
No 109
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=38.39 E-value=31 Score=30.32 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=20.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHh
Q 023521 138 VIAYLMKCKGWRLAQSHQWVKER 160 (281)
Q Consensus 138 v~AYLm~~~g~sl~~A~~~Vr~~ 160 (281)
+=+.||+.+||+-++||+++|..
T Consensus 150 AKglLM~~~g~sE~EAy~~lR~~ 172 (194)
T COG3707 150 AKGLLMKRRGLSEEEAYKLLRRT 172 (194)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHH
Confidence 45679999999999999999864
No 110
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=38.12 E-value=50 Score=28.52 Aligned_cols=30 Identities=33% Similarity=0.275 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHHHHcCCeEEEEeCCCCchHHH
Q 023521 104 LQFDDAIQFLEQCERDKACVLVHCMFGKNRSAA 136 (281)
Q Consensus 104 ~~f~~a~~fI~~~~~~g~~VLVHC~~G~sRS~t 136 (281)
....++.+.|-++++.|++||++ |.|+|++
T Consensus 25 ~~I~~aa~~i~~~l~~G~Kvl~c---GNGgSaa 54 (176)
T COG0279 25 EAIERAAQLLVQSLLNGNKVLAC---GNGGSAA 54 (176)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEE---CCCcchh
Confidence 45677888888899999999886 6667765
No 111
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=37.92 E-value=84 Score=25.38 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHHHHHHcCCeEEEEeCCCCchHHHHH
Q 023521 103 ILQFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIV 138 (281)
Q Consensus 103 ~~~f~~a~~fI~~~~~~g~~VLVHC~~G~sRS~tvv 138 (281)
.+.+.++.+.|.+.+++|++|++. |-|-|++++
T Consensus 18 ~~~i~~aa~~i~~~~~~gg~i~~~---G~G~S~~~a 50 (138)
T PF13580_consen 18 AEAIEKAADLIAEALRNGGRIFVC---GNGHSAAIA 50 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--EEEE---ESTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEE---cCchhhhHH
Confidence 457889999999999998888876 555665553
No 112
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=37.43 E-value=1.5e+02 Score=26.11 Aligned_cols=71 Identities=14% Similarity=0.073 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHHcCCeEEEEeCCCCchHHHHHHHHHHHhcCCC---------HHHHHHHHHHhCCC----CcCCHHHH
Q 023521 105 QFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWR---------LAQSHQWVKERRPS----VNLTEDVH 171 (281)
Q Consensus 105 ~f~~a~~fI~~~~~~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~s---------l~~A~~~Vr~~RP~----i~pn~~f~ 171 (281)
.+..+.++|..+.++|.++.+....+ +|+..-++.+|....|.. ..-+..+++++.+. +.=..+..
T Consensus 15 ~~~~a~e~i~~l~~~g~~~~~~tN~~-~~~~~~~~~~l~~~~g~~~~~~~iits~~~~~~~l~~~~~~~~v~v~G~~~~~ 93 (236)
T TIGR01460 15 PIPGAAEALNRLRAKGKPVVFLTNNS-SRSEEDYAEKLSSLLGVDVSPDQIITSGSVTKDLLRQRFEGEKVYVIGVGELR 93 (236)
T ss_pred cCcCHHHHHHHHHHCCCeEEEEECCC-CCCHHHHHHHHHHhcCCCCCHHHeeeHHHHHHHHHHHhCCCCEEEEECCHHHH
Confidence 46688999999999988888887665 788889999998866652 34566777765432 22245566
Q ss_pred HHHHH
Q 023521 172 QQLQE 176 (281)
Q Consensus 172 ~qL~~ 176 (281)
..|+.
T Consensus 94 ~~l~~ 98 (236)
T TIGR01460 94 ESLEG 98 (236)
T ss_pred HHHHH
Confidence 66654
No 113
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain represented in this family and a C-terminal OB fold domain. Zinc is chelated by the four conserved cysteines in the alignment. ; PDB: 3IRB_A.
Probab=37.29 E-value=15 Score=23.05 Aligned_cols=21 Identities=33% Similarity=0.781 Sum_probs=13.0
Q ss_pred CCccccccccccccCCccccCC
Q 023521 8 NPCSVCGHYHKYEEGEVCGICG 29 (281)
Q Consensus 8 ~~~~~~~~y~~~e~g~~~~~cg 29 (281)
..|..||+++-..+ ..|..|+
T Consensus 12 ~rC~~Cg~~~~pPr-~~Cp~C~ 32 (37)
T PF12172_consen 12 QRCRDCGRVQFPPR-PVCPHCG 32 (37)
T ss_dssp EE-TTT--EEES---SEETTTT
T ss_pred EEcCCCCCEecCCC-cCCCCcC
Confidence 46999999988777 8888886
No 114
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=37.18 E-value=2.6e+02 Score=24.71 Aligned_cols=64 Identities=16% Similarity=0.175 Sum_probs=38.8
Q ss_pred CHHHHHhCCCcEEEEcCCC---Ccccc---CCCceEEec---cCC-------ChhhHHHHHHHHHHHHHcCCeEEEEeCC
Q 023521 66 RSGLLKTQGISRVLNTVPS---CQNLY---KNSFTYHCL---EDD-------KILQFDDAIQFLEQCERDKACVLVHCMF 129 (281)
Q Consensus 66 ~~~~L~~~gIt~IInl~~~---~~~~~---~~~~~y~~v---p~~-------~~~~f~~a~~fI~~~~~~g~~VLVHC~~ 129 (281)
-.+.|+++||.+|+.-... .+... ...+.|.++ ... ....+++..+.|....++++.|+|-...
T Consensus 134 ~~~~l~~~~~~~v~~d~~~~~~~p~~~~~~~~~~~y~RlhG~~~~~~~~~~Ys~~eL~~~a~~i~~~~~~~~~v~v~fnN 213 (230)
T PF01904_consen 134 VFELLREHGVALVIADSPRLPSLPPPEPQTTPDFAYVRLHGRNGEGWYDYRYSDEELEEWAERIRAWAAQGKEVYVFFNN 213 (230)
T ss_dssp HHHHHHHTT-EEEEEE---BTTC------SSTTEEEEEE--S-TTTTTB----HHHHHHHHHHHHHHHTCSSEEEEEE-S
T ss_pred HHHHHHHcCCEEEEeCCcccCCCCCcccccCCCCeEEeeccCcccccccccCCHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 3578899999999976555 33222 135666655 322 2356888999999998888887776654
No 115
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=37.07 E-value=2.6e+02 Score=27.22 Aligned_cols=45 Identities=20% Similarity=0.420 Sum_probs=27.8
Q ss_pred cCCeEEEEeCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHH
Q 023521 119 DKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKI 181 (281)
Q Consensus 119 ~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~sl~~A~~~Vr~~RP~i~pn~~f~~qL~~~E~~L 181 (281)
.+++|+|-|+.|.. -+.|..++|++-+....+ ..+.-|+.|-.++
T Consensus 376 ~~~~I~ViCrrGNd-----------------SQ~Av~~Lre~~~~~~vr-DvigGl~~w~~~v 420 (427)
T KOG2017|consen 376 ESKDIFVICRRGND-----------------SQRAVRILREKFPDSSVR-DVIGGLKAWAAKV 420 (427)
T ss_pred cCCCEEEEeCCCCc-----------------hHHHHHHHHhhCCchhhh-hhhhHHHHHHHhc
Confidence 46789999988864 466666666665544332 3344555555444
No 116
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=36.79 E-value=21 Score=28.42 Aligned_cols=29 Identities=24% Similarity=0.635 Sum_probs=23.3
Q ss_pred CCccccccccccccCC--ccccCCCCCCCCc
Q 023521 8 NPCSVCGHYHKYEEGE--VCGICGHRSASSA 36 (281)
Q Consensus 8 ~~~~~~~~y~~~e~g~--~~~~cg~~~~~~~ 36 (281)
-||-.|+----||+|+ +|+.|+|-+...+
T Consensus 3 p~CP~C~seytY~dg~~~iCpeC~~EW~~~~ 33 (109)
T TIGR00686 3 PPCPKCNSEYTYHDGTQLICPSCLYEWNENE 33 (109)
T ss_pred CcCCcCCCcceEecCCeeECccccccccccc
Confidence 4799999877788665 7999999988654
No 117
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=35.81 E-value=13 Score=26.36 Aligned_cols=24 Identities=33% Similarity=0.850 Sum_probs=17.2
Q ss_pred ccccccccccccCC--ccccCCCCCC
Q 023521 10 CSVCGHYHKYEEGE--VCGICGHRSA 33 (281)
Q Consensus 10 ~~~~~~y~~~e~g~--~~~~cg~~~~ 33 (281)
|+-|+.=-...+|+ .|..|||++.
T Consensus 23 CgdC~~en~lk~~D~irCReCG~RIl 48 (62)
T KOG3507|consen 23 CGDCGQENTLKRGDVIRCRECGYRIL 48 (62)
T ss_pred eccccccccccCCCcEehhhcchHHH
Confidence 77777666666554 5888999875
No 118
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=35.45 E-value=62 Score=30.88 Aligned_cols=17 Identities=35% Similarity=0.577 Sum_probs=13.8
Q ss_pred HcCCeEEEEeCCCCchH
Q 023521 118 RDKACVLVHCMFGKNRS 134 (281)
Q Consensus 118 ~~g~~VLVHC~~G~sRS 134 (281)
..|..||.||.+|..++
T Consensus 146 ~~g~~ILThc~sg~lat 162 (339)
T PRK06036 146 EDGDTVLTHCNAGRLAC 162 (339)
T ss_pred cCCCEEEEecCCccccc
Confidence 36788999999997654
No 119
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=35.44 E-value=17 Score=29.21 Aligned_cols=29 Identities=21% Similarity=0.423 Sum_probs=24.0
Q ss_pred CCccccccccccc-cCCccccCCCCCCCCc
Q 023521 8 NPCSVCGHYHKYE-EGEVCGICGHRSASSA 36 (281)
Q Consensus 8 ~~~~~~~~y~~~e-~g~~~~~cg~~~~~~~ 36 (281)
.-|..|++.++.= +-+.|..|++++..+.
T Consensus 70 V~CP~C~K~TKmLGr~D~CM~C~~pLTLd~ 99 (114)
T PF11023_consen 70 VECPNCGKQTKMLGRVDACMHCKEPLTLDP 99 (114)
T ss_pred eECCCCCChHhhhchhhccCcCCCcCccCc
Confidence 3599999999876 7789999999988653
No 120
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=35.18 E-value=58 Score=29.53 Aligned_cols=55 Identities=16% Similarity=0.006 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHcCCeEEEEeCCCCchHHHHHHHHH------HHhcCCCHHHHHHHHHH
Q 023521 105 QFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYL------MKCKGWRLAQSHQWVKE 159 (281)
Q Consensus 105 ~f~~a~~fI~~~~~~g~~VLVHC~~G~sRS~tvv~AYL------m~~~g~sl~~A~~~Vr~ 159 (281)
+.+-...+|+.+.+.+.+|.|||.......-.++-.|. ++-+.=++++|-.+++.
T Consensus 112 Q~~vf~~ql~lA~~~~~Pv~iH~r~a~~~~~~il~~~~~~~~~i~H~fsG~~~~a~~~l~~ 172 (258)
T PRK11449 112 QQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRHDLPRTGVVHGFSGSLQQAERFVQL 172 (258)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEecCccHHHHHHHHhcCCCCCeEEEcCCCCHHHHHHHHHC
Confidence 44444567788888899999999875444433333321 11112256666666553
No 121
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=34.30 E-value=43 Score=24.88 Aligned_cols=14 Identities=21% Similarity=0.354 Sum_probs=11.9
Q ss_pred CeEEEEeCCCCchH
Q 023521 121 ACVLVHCMFGKNRS 134 (281)
Q Consensus 121 ~~VLVHC~~G~sRS 134 (281)
++|+|.|..|+|=|
T Consensus 1 ~kilvvCg~G~gtS 14 (87)
T cd05567 1 KKIVFACDAGMGSS 14 (87)
T ss_pred CEEEEECCCCccHH
Confidence 47999999999854
No 122
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=34.24 E-value=22 Score=27.66 Aligned_cols=10 Identities=30% Similarity=0.933 Sum_probs=8.9
Q ss_pred CeEEEEeCCC
Q 023521 121 ACVLVHCMFG 130 (281)
Q Consensus 121 ~~VLVHC~~G 130 (281)
.+|||||.-|
T Consensus 86 ~~~yIhCsIG 95 (97)
T PF10302_consen 86 PRIYIHCSIG 95 (97)
T ss_pred CeEEEEEecc
Confidence 6899999877
No 123
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=33.82 E-value=70 Score=29.70 Aligned_cols=22 Identities=27% Similarity=0.532 Sum_probs=17.6
Q ss_pred HHcCCe---EEEEeCCCCchHHHHH
Q 023521 117 ERDKAC---VLVHCMFGKNRSAAIV 138 (281)
Q Consensus 117 ~~~g~~---VLVHC~~G~sRS~tvv 138 (281)
.++|+. |.|=|..|.-||.+++
T Consensus 237 ~~egks~lTIaIGCTGGqHRSV~ia 261 (286)
T COG1660 237 EKEGKSYLTIAIGCTGGQHRSVYIA 261 (286)
T ss_pred HhcCCeEEEEEEccCCCccchHHHH
Confidence 345655 7789999999999875
No 124
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=33.82 E-value=64 Score=24.13 Aligned_cols=27 Identities=15% Similarity=0.075 Sum_probs=18.2
Q ss_pred CCeEEEEeCCCCchHHHHHHHHHHHhcCCC
Q 023521 120 KACVLVHCMFGKNRSAAIVIAYLMKCKGWR 149 (281)
Q Consensus 120 g~~VLVHC~~G~sRS~tvv~AYLm~~~g~s 149 (281)
+..|+|+|..|. ||..+ |+.++..|.+
T Consensus 65 ~~~vv~~c~~g~-~s~~~--a~~L~~~G~~ 91 (105)
T cd01525 65 GKIIVIVSHSHK-HAALF--AAFLVKCGVP 91 (105)
T ss_pred CCeEEEEeCCCc-cHHHH--HHHHHHcCCC
Confidence 678999999986 66433 3445556663
No 125
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=33.78 E-value=92 Score=27.58 Aligned_cols=36 Identities=25% Similarity=0.447 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHcCCeEEEEeCCCCchHHHHHHHHHHHhc
Q 023521 105 QFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCK 146 (281)
Q Consensus 105 ~f~~a~~fI~~~~~~g~~VLVHC~~G~sRS~tvv~AYLm~~~ 146 (281)
.|.++++.|-++ .|+|+|- |+|||+-++=++-|+..
T Consensus 27 ~~~~a~~~i~~~---~gkv~V~---G~GkSG~Igkk~Aa~L~ 62 (202)
T COG0794 27 DFVRAVELILEC---KGKVFVT---GVGKSGLIGKKFAARLA 62 (202)
T ss_pred HHHHHHHHHHhc---CCcEEEE---cCChhHHHHHHHHHHHH
Confidence 455555555544 6888885 99999999877777644
No 126
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=33.27 E-value=1.1e+02 Score=25.68 Aligned_cols=33 Identities=24% Similarity=0.265 Sum_probs=25.1
Q ss_pred hhhHHHHHHHHHHHHHcCCeEEEEeCCCCchHHHHH
Q 023521 103 ILQFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIV 138 (281)
Q Consensus 103 ~~~f~~a~~fI~~~~~~g~~VLVHC~~G~sRS~tvv 138 (281)
...++++++.|.+++.++++|++. |.|.|..++
T Consensus 16 ~~~i~~a~~~i~~~i~~~~~I~i~---G~G~S~~~A 48 (177)
T cd05006 16 AEAIEQAAQLLAEALLNGGKILIC---GNGGSAADA 48 (177)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHH
Confidence 467889999999998888888776 556565543
No 127
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=33.17 E-value=50 Score=31.74 Aligned_cols=24 Identities=38% Similarity=0.396 Sum_probs=16.8
Q ss_pred eEEEEeCCCCchHHHHHHHHHHHhcCC
Q 023521 122 CVLVHCMFGKNRSAAIVIAYLMKCKGW 148 (281)
Q Consensus 122 ~VLVHC~~G~sRS~tvv~AYLm~~~g~ 148 (281)
+|+|||..| .||.. ++.+|. ..|+
T Consensus 334 ~Ivv~C~sG-~RS~~-Aa~~L~-~~G~ 357 (370)
T PRK05600 334 NVVVYCASG-IRSAD-FIEKYS-HLGH 357 (370)
T ss_pred cEEEECCCC-hhHHH-HHHHHH-HcCC
Confidence 899999999 57754 445554 4665
No 128
>COG0333 RpmF Ribosomal protein L32 [Translation, ribosomal structure and biogenesis]
Probab=32.99 E-value=22 Score=25.04 Aligned_cols=22 Identities=36% Similarity=0.827 Sum_probs=17.6
Q ss_pred CCccccccccccccCCccccCCCC
Q 023521 8 NPCSVCGHYHKYEEGEVCGICGHR 31 (281)
Q Consensus 8 ~~~~~~~~y~~~e~g~~~~~cg~~ 31 (281)
+-|..||+|+. ..-+|..||.-
T Consensus 28 ~~c~~cG~~~l--~Hrvc~~cg~Y 49 (57)
T COG0333 28 SVCPNCGEYKL--PHRVCLKCGYY 49 (57)
T ss_pred eeccCCCCccc--CceEcCCCCCc
Confidence 56889999988 77888888843
No 129
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=32.94 E-value=80 Score=30.06 Aligned_cols=13 Identities=38% Similarity=0.695 Sum_probs=10.8
Q ss_pred HcCC----eEEEEeCCC
Q 023521 118 RDKA----CVLVHCMFG 130 (281)
Q Consensus 118 ~~g~----~VLVHC~~G 130 (281)
.+|. .||.||.+|
T Consensus 141 ~dg~~~~~~ILThcnsg 157 (331)
T TIGR00512 141 KKGVAAPLRVLTHCNTG 157 (331)
T ss_pred cCCCCCCceEEeecCCc
Confidence 3577 899999987
No 130
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=31.72 E-value=77 Score=26.68 Aligned_cols=67 Identities=22% Similarity=0.320 Sum_probs=46.2
Q ss_pred HHHHHHHHH--HcCCeEEEEeCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Q 023521 109 AIQFLEQCE--RDKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQK 180 (281)
Q Consensus 109 a~~fI~~~~--~~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~sl~~A~~~Vr~~RP~i~pn~~f~~qL~~~E~~ 180 (281)
+.++|.+.. ..+.+|+|-|-.|.+=.-++++|-.+...|+...- --..+.-..++.+..++..++..
T Consensus 12 ~a~~i~~~~~~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v-----~~~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF03853_consen 12 IAELIRKLFGSPKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTV-----YLVGPPEKLSEDAKQQLEILKKM 80 (169)
T ss_dssp HHHHHHHHSTCCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEE-----EEEESSSSTSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcccCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEE-----EEEeccccCCHHHHHHHHHHHhc
Confidence 456677766 66799999999998888888888888888986321 11223346677788888877654
No 131
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=31.62 E-value=85 Score=27.07 Aligned_cols=32 Identities=19% Similarity=0.153 Sum_probs=25.9
Q ss_pred hhhHHHHHHHHHHHHHcCCeEEEEeCCCCchHHHH
Q 023521 103 ILQFDDAIQFLEQCERDKACVLVHCMFGKNRSAAI 137 (281)
Q Consensus 103 ~~~f~~a~~fI~~~~~~g~~VLVHC~~G~sRS~tv 137 (281)
...++++++.|.+++.+|++|+|. |.|.|+.+
T Consensus 27 ~~~i~~a~~~i~~al~~~~rI~i~---G~G~S~~~ 58 (192)
T PRK00414 27 IHAIQRAAVLIADSFKAGGKVLSC---GNGGSHCD 58 (192)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHH
Confidence 467999999999999999999876 66666554
No 132
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=31.49 E-value=83 Score=24.05 Aligned_cols=30 Identities=13% Similarity=0.089 Sum_probs=19.1
Q ss_pred HcCCeEEEEeCCCCc-hHHHHHHHHHHHhcCCC
Q 023521 118 RDKACVLVHCMFGKN-RSAAIVIAYLMKCKGWR 149 (281)
Q Consensus 118 ~~g~~VLVHC~~G~s-RS~tvv~AYLm~~~g~s 149 (281)
..+..|+|+|..|.. ||.. ++..++..|++
T Consensus 62 ~~~~~vvvyc~~g~~~~s~~--~a~~l~~~G~~ 92 (110)
T cd01521 62 DKEKLFVVYCDGPGCNGATK--AALKLAELGFP 92 (110)
T ss_pred CCCCeEEEEECCCCCchHHH--HHHHHHHcCCe
Confidence 457899999998863 4433 33444556663
No 133
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=31.24 E-value=65 Score=29.23 Aligned_cols=69 Identities=16% Similarity=0.320 Sum_probs=41.6
Q ss_pred cEEEcCc-cccCCHHHHHhCCCcEEEEcCCCCcc---------ccCCCceEEecc---C-----CC---hhhHHHHHHHH
Q 023521 55 FLYLGSY-DNASRSGLLKTQGISRVLNTVPSCQN---------LYKNSFTYHCLE---D-----DK---ILQFDDAIQFL 113 (281)
Q Consensus 55 ~LyLGs~-~~a~~~~~L~~~gIt~IInl~~~~~~---------~~~~~~~y~~vp---~-----~~---~~~f~~a~~fI 113 (281)
.+..|.. ....=.+++++++|+.|||.+..... ....++.|+++. . +. ...+++|++.+
T Consensus 46 ~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l 125 (249)
T PF02571_consen 46 EVRVGRLGDEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFERPSWQPEPDDNWHYVDSYEEAAELL 125 (249)
T ss_pred eEEECCCCCHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEEcCCcccCCCCeEEEeCCHHHHHHHH
Confidence 5788888 44444578899999999998764321 122345555442 1 11 24677777777
Q ss_pred HHHHHcCCeEEE
Q 023521 114 EQCERDKACVLV 125 (281)
Q Consensus 114 ~~~~~~g~~VLV 125 (281)
.+. .+++||+
T Consensus 126 ~~~--~~~~ifl 135 (249)
T PF02571_consen 126 KEL--GGGRIFL 135 (249)
T ss_pred hhc--CCCCEEE
Confidence 443 2256665
No 134
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=30.72 E-value=24 Score=23.64 Aligned_cols=24 Identities=33% Similarity=0.875 Sum_probs=16.6
Q ss_pred cCCcccccc-ccccc-----cCCccccCCC
Q 023521 7 ENPCSVCGH-YHKYE-----EGEVCGICGH 30 (281)
Q Consensus 7 ~~~~~~~~~-y~~~e-----~g~~~~~cg~ 30 (281)
|-.|..||+ |+.+- ....|..||+
T Consensus 5 ey~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~ 34 (52)
T TIGR02605 5 EYRCTACGHRFEVLQKMSDDPLATCPECGG 34 (52)
T ss_pred EEEeCCCCCEeEEEEecCCCCCCCCCCCCC
Confidence 456999999 55542 2336999997
No 135
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=30.31 E-value=3.5e+02 Score=27.88 Aligned_cols=58 Identities=16% Similarity=0.210 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHcCCeEEEEe-CCCCchHHH-HHHHHHHHhcCCCHHHHHHHHHHhCC
Q 023521 105 QFDDAIQFLEQCERDKACVLVHC-MFGKNRSAA-IVIAYLMKCKGWRLAQSHQWVKERRP 162 (281)
Q Consensus 105 ~f~~a~~fI~~~~~~g~~VLVHC-~~G~sRS~t-vv~AYLm~~~g~sl~~A~~~Vr~~RP 162 (281)
.+.+-.+-|-+++.+|+.++|+= ..|+.+-.. ..+..|.+..+++.++|-++++..+-
T Consensus 519 ~lre~~del~~~l~~ga~~YVCGd~~~Ma~dV~~AL~~il~~~g~~s~eea~~~l~~lk~ 578 (587)
T COG0369 519 RLREQADELWEWLEEGAHIYVCGDAKGMAKDVEEALLDILAKEGGLSREEAEEYLKELKK 578 (587)
T ss_pred HHHHhHHHHHHHHHCCCEEEEeCCCccchHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 45555677777888888899987 677776654 44455677778899999988887663
No 136
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=29.97 E-value=67 Score=33.09 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=19.8
Q ss_pred HcCCeEEEEeCCCCchHHHHHHHHHHHhcCCC
Q 023521 118 RDKACVLVHCMFGKNRSAAIVIAYLMKCKGWR 149 (281)
Q Consensus 118 ~~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~s 149 (281)
..++.|+|+|..|. ||+. ++++++..|+.
T Consensus 221 ~~~~~VVvYC~sG~-rAa~--~~~~L~~lG~~ 249 (610)
T PRK09629 221 TPDKEVITHCQTHH-RSGF--TYLVAKALGYP 249 (610)
T ss_pred CCCCCEEEECCCCh-HHHH--HHHHHHHcCCC
Confidence 45678999999985 5543 34555666763
No 137
>PRK10220 hypothetical protein; Provisional
Probab=29.77 E-value=37 Score=27.09 Aligned_cols=29 Identities=24% Similarity=0.638 Sum_probs=23.5
Q ss_pred CCccccccccccccCC--ccccCCCCCCCCc
Q 023521 8 NPCSVCGHYHKYEEGE--VCGICGHRSASSA 36 (281)
Q Consensus 8 ~~~~~~~~y~~~e~g~--~~~~cg~~~~~~~ 36 (281)
-+|-.|+----||+|+ +|+.|+|-+...+
T Consensus 4 P~CP~C~seytY~d~~~~vCpeC~hEW~~~~ 34 (111)
T PRK10220 4 PHCPKCNSEYTYEDNGMYICPECAHEWNDAE 34 (111)
T ss_pred CcCCCCCCcceEcCCCeEECCcccCcCCccc
Confidence 4799999877788665 7999999988664
No 138
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=28.86 E-value=1.1e+02 Score=30.63 Aligned_cols=60 Identities=17% Similarity=0.368 Sum_probs=36.6
Q ss_pred cCCeEEEEeCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHhCC---CCcCCHHHHHHHHHHHHHH
Q 023521 119 DKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRP---SVNLTEDVHQQLQEYEQKI 181 (281)
Q Consensus 119 ~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~sl~~A~~~Vr~~RP---~i~pn~~f~~qL~~~E~~L 181 (281)
.|+.|+|.-..|-|.|.+.++..|.+......... -....+ .+.|+.+...|+.+.-..+
T Consensus 157 ~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~---~~~~~~~aLIL~PTreLa~Qi~~~~~~l 219 (518)
T PLN00206 157 SGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHP---SEQRNPLAMVLTPTRELCVQVEDQAKVL 219 (518)
T ss_pred cCCCEEEEecCCCCccHHHHHHHHHHHHhhccccc---cccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 57899999999999998887776655321100000 001122 4667888877766554444
No 139
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=28.72 E-value=2.1e+02 Score=29.83 Aligned_cols=55 Identities=9% Similarity=0.085 Sum_probs=37.8
Q ss_pred HHHHHHHHHH-HcCCeEEEEeCCC-CchHHHH-HHHHHHHhcCCCHHHHHHHHHHhCC
Q 023521 108 DAIQFLEQCE-RDKACVLVHCMFG-KNRSAAI-VIAYLMKCKGWRLAQSHQWVKERRP 162 (281)
Q Consensus 108 ~a~~fI~~~~-~~g~~VLVHC~~G-~sRS~tv-v~AYLm~~~g~sl~~A~~~Vr~~RP 162 (281)
+-.+-|-+.+ ++|+.++|+=.++ +.|-..= ..-.+++..+++-.+|.++++..|-
T Consensus 579 e~~d~v~~~L~~~~g~iYvCGd~~~Ma~dV~~~L~~i~~~~g~~~~~ea~~~lk~lk~ 636 (645)
T KOG1158|consen 579 EYADEVWELLKKEGGHIYVCGDAKGMAKDVQDALVRILAKDGGLSEEEAEKYLKQLKK 636 (645)
T ss_pred HHHHHHHHHHhcCCcEEEEecCCccchHHHHHHHHHHHHhhCCccHHHHHHHHHHhhh
Confidence 3334444444 3488899987777 7777653 3445566777899999999998764
No 140
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=28.36 E-value=46 Score=32.19 Aligned_cols=42 Identities=24% Similarity=0.521 Sum_probs=26.8
Q ss_pred Cccccccccccc--cCCccccCCCCCCCCcccccccccCCCCceEeCCcEEEcCccccCCHHHHH
Q 023521 9 PCSVCGHYHKYE--EGEVCGICGHRSASSAEKTTTLQVSAFPSEILPDFLYLGSYDNASRSGLLK 71 (281)
Q Consensus 9 ~~~~~~~y~~~e--~g~~~~~cg~~~~~~~~~~~~~~~~~~p~eI~p~~LyLGs~~~a~~~~~L~ 71 (281)
=|..|++++... ....|..||..+-. -|-||+|+.. +.++++
T Consensus 246 ~C~~c~~~~~~~~~~~~~C~~c~~~~~~------------------~GPlW~G~l~---d~~fl~ 289 (382)
T PRK04338 246 YCPKCLYREEVEGLPPEECPVCGGKFGT------------------AGPLWLGPLH---DKEFVE 289 (382)
T ss_pred ECCCCCcEEEecCCCCCCCCCCCCccee------------------ccccccCccC---CHHHHH
Confidence 388999988653 34568778764322 2359999884 444443
No 141
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=27.92 E-value=1.1e+02 Score=29.26 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=20.0
Q ss_pred HcCCeEEEEeCCCCchHHHHHHHHHHHhcCCC
Q 023521 118 RDKACVLVHCMFGKNRSAAIVIAYLMKCKGWR 149 (281)
Q Consensus 118 ~~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~s 149 (281)
..+..|+|+|..|. ||.. ++.+++..|++
T Consensus 55 ~~~~~IvvyC~~G~-rs~~--aa~~L~~~G~~ 83 (376)
T PRK08762 55 DRDREIVLICASGT-RSAH--AAATLRELGYT 83 (376)
T ss_pred CCCCeEEEEcCCCc-HHHH--HHHHHHHcCCC
Confidence 46789999999884 6643 34455667763
No 142
>COG4738 Predicted transcriptional regulator [Transcription]
Probab=27.84 E-value=42 Score=27.11 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=23.7
Q ss_pred CCCchHHHHHHHHHHHhcCCCHHHHHHHHHHhC
Q 023521 129 FGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERR 161 (281)
Q Consensus 129 ~G~sRS~tvv~AYLm~~~g~sl~~A~~~Vr~~R 161 (281)
.|++|+.|.+++||++....+ -.-++.+...|
T Consensus 23 lgi~R~vA~tlv~L~~~~E~s-S~~IE~~sgLR 54 (124)
T COG4738 23 LGIPRNVATTLVCLAKGDEAS-SREIERVSGLR 54 (124)
T ss_pred cCCCchHHHHHHHHhcCcchh-hhhhHHhhcCC
Confidence 489999999999999966554 23355666555
No 143
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=27.79 E-value=73 Score=24.42 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHcCCeEEEEeC
Q 023521 105 QFDDAIQFLEQCERDKACVLVHCM 128 (281)
Q Consensus 105 ~f~~a~~fI~~~~~~g~~VLVHC~ 128 (281)
-+.++.+.++.+...|-.+.+||.
T Consensus 31 Git~~~~i~~~A~~~gi~~~~h~~ 54 (111)
T PF13378_consen 31 GITEALRIAALAEAHGIPVMPHSM 54 (111)
T ss_dssp SHHHHHHHHHHHHHTT-EEEEBSS
T ss_pred CHHHHHHHHHHHHHhCCCEEecCC
Confidence 588999999999999999999996
No 144
>KOG1004 consensus Exosomal 3'-5' exoribonuclease complex subunit Rrp40 [Translation, ribosomal structure and biogenesis]
Probab=27.78 E-value=1.2e+02 Score=27.12 Aligned_cols=40 Identities=20% Similarity=0.156 Sum_probs=32.4
Q ss_pred cCCeEEEEeCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 023521 119 DKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKER 160 (281)
Q Consensus 119 ~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~sl~~A~~~Vr~~ 160 (281)
-+|+|.|||.. .+..-+++-+||....|+=++++.++|+.
T Consensus 184 lNGriWV~ae~--~~~t~~i~~~l~~~e~~td~~q~~~~k~~ 223 (230)
T KOG1004|consen 184 LNGRIWVKAET--LSDTLIIANILMNCEFMTDTQQRIMVKQL 223 (230)
T ss_pred cCceEEEeccC--cchHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 47999999976 45566777889999999999988777753
No 145
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=27.65 E-value=1.1e+02 Score=21.84 Aligned_cols=29 Identities=31% Similarity=0.523 Sum_probs=19.3
Q ss_pred HcCCeEEEEeCCCCchHHHHHHHHHHHhcCCC
Q 023521 118 RDKACVLVHCMFGKNRSAAIVIAYLMKCKGWR 149 (281)
Q Consensus 118 ~~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~s 149 (281)
..+..|+|+|..|. |+ ..++++++..|+.
T Consensus 54 ~~~~~iv~~c~~g~-~a--~~~~~~l~~~G~~ 82 (100)
T smart00450 54 DKDKPVVVYCRSGN-RS--AKAAWLLRELGFK 82 (100)
T ss_pred CCCCeEEEEeCCCc-HH--HHHHHHHHHcCCC
Confidence 45688999996653 54 4445666667764
No 146
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=27.28 E-value=2e+02 Score=22.02 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=34.5
Q ss_pred HHHhcCCCHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHc
Q 023521 142 LMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKIF 182 (281)
Q Consensus 142 Lm~~~g~sl~~A~~~Vr~~RP~i~pn~~f~~qL~~~E~~L~ 182 (281)
|.+..|++++++..++........+.......|.+.+..+.
T Consensus 53 llr~~G~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (99)
T cd04765 53 LLYEKGYTIEGAKQALKEDGAAAIREEEAEERLPSIRAELL 93 (99)
T ss_pred HHHHCCCCHHHHHHHHHhccccccchhhHHHHHHHHHHHHH
Confidence 34568999999999999988888888888888888877764
No 147
>PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F ....
Probab=27.17 E-value=2.4e+02 Score=24.27 Aligned_cols=54 Identities=7% Similarity=-0.070 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHcCCeEEEEeCCC-----CchHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 023521 106 FDDAIQFLEQCERDKACVLVHCMFG-----KNRSAAIVIAYLMKCKGWRLAQSHQWVKE 159 (281)
Q Consensus 106 f~~a~~fI~~~~~~g~~VLVHC~~G-----~sRS~tvv~AYLm~~~g~sl~~A~~~Vr~ 159 (281)
......-+.++++.|..|++-...+ .+......+..++...|+++++|++.+..
T Consensus 222 ~~~~~~~~~~l~~~Gv~~~l~sD~~~~~~~~~~~~~~~~~~~~~~~gl~~~~al~~~T~ 280 (304)
T PF13147_consen 222 LREDRAALRELLEAGVPVALGSDHAPSSTEGSGDLLHEAMRLAVRAGLSPEEALRAATS 280 (304)
T ss_dssp THHHHHHHHHHHHTTSSEEEEE-BBTTTTTCTTTHHHHHHHHHHHTSSTHHHHHHHHTH
T ss_pred chhhhHHHHHHHhCCCeEEEEcCCcccccccccccchhhhhHHhhcCCCHHHHHHHHHH
Confidence 5556677888888999999988876 45556666777777799999999987643
No 148
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=26.94 E-value=1.2e+02 Score=27.58 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=19.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHh
Q 023521 138 VIAYLMKCKGWRLAQSHQWVKER 160 (281)
Q Consensus 138 v~AYLm~~~g~sl~~A~~~Vr~~ 160 (281)
++..||+.+|++.++|++.++..
T Consensus 231 ~V~vl~~~~g~s~~eA~~~~~~~ 253 (303)
T cd00687 231 LVKVLAEEHGLSLEEAISVVRDM 253 (303)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHH
Confidence 34568999999999999999876
No 149
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=26.80 E-value=1.1e+02 Score=28.65 Aligned_cols=17 Identities=35% Similarity=0.620 Sum_probs=15.3
Q ss_pred eEEEEeCCCCchHHHHH
Q 023521 122 CVLVHCMFGKNRSAAIV 138 (281)
Q Consensus 122 ~VLVHC~~G~sRS~tvv 138 (281)
.|.|=|+.|.-||++++
T Consensus 244 tIaiGCTGG~HRSV~ia 260 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIA 260 (284)
T ss_pred EEEEEcCCCcCcHHHHH
Confidence 48999999999998876
No 150
>PRK07411 hypothetical protein; Validated
Probab=26.40 E-value=76 Score=30.68 Aligned_cols=28 Identities=29% Similarity=0.471 Sum_probs=19.7
Q ss_pred cCCeEEEEeCCCCchHHHHHHHHHHHhcCCC
Q 023521 119 DKACVLVHCMFGKNRSAAIVIAYLMKCKGWR 149 (281)
Q Consensus 119 ~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~s 149 (281)
.+..|+|||..|. ||.. +|..++..|++
T Consensus 341 ~d~~IVvyC~~G~-RS~~--aa~~L~~~G~~ 368 (390)
T PRK07411 341 NGHRLIAHCKMGG-RSAK--ALGILKEAGIE 368 (390)
T ss_pred CCCeEEEECCCCH-HHHH--HHHHHHHcCCC
Confidence 4689999999985 7743 34455667764
No 151
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=26.25 E-value=1.3e+02 Score=28.83 Aligned_cols=16 Identities=31% Similarity=0.449 Sum_probs=12.5
Q ss_pred HcCCeEEEEeCCCCch
Q 023521 118 RDKACVLVHCMFGKNR 133 (281)
Q Consensus 118 ~~g~~VLVHC~~G~sR 133 (281)
..|..||.||.+|.-.
T Consensus 145 ~~g~~ILThc~sg~la 160 (344)
T PRK05720 145 RKGQGILTHCNAGWLA 160 (344)
T ss_pred cCCCEEEEecCCCcce
Confidence 3678899999998543
No 152
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=25.96 E-value=66 Score=29.76 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=19.2
Q ss_pred CCCchHHHHHHHHHHHhcCCCHHHHHHH
Q 023521 129 FGKNRSAAIVIAYLMKCKGWRLAQSHQW 156 (281)
Q Consensus 129 ~G~sRS~tvv~AYLm~~~g~sl~~A~~~ 156 (281)
=|.|||++.+.+-|.- |++-+.|.++
T Consensus 165 PG~SRSGaTI~~~lll--G~~r~~Aaef 190 (270)
T COG1968 165 PGTSRSGATISGGLLL--GLSREAAAEF 190 (270)
T ss_pred CCCCccHHHHHHHHHc--CCCHHHHHHH
Confidence 5999999888776665 7776666553
No 153
>PLN02599 dihydroorotase
Probab=25.81 E-value=4.9e+02 Score=24.93 Aligned_cols=57 Identities=16% Similarity=0.223 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHcCCeEEEEeCC-CC-----chHHHHH--HH--HHHHhc-------CCCHHHHHHHHHHhCC
Q 023521 106 FDDAIQFLEQCERDKACVLVHCMF-GK-----NRSAAIV--IA--YLMKCK-------GWRLAQSHQWVKERRP 162 (281)
Q Consensus 106 f~~a~~fI~~~~~~g~~VLVHC~~-G~-----sRS~tvv--~A--YLm~~~-------g~sl~~A~~~Vr~~RP 162 (281)
.....+.++.+.+.|..|+|||.. +. .|-...+ +. ++.+.- .++-.++++.|++.|.
T Consensus 135 ~~~l~~~le~~~e~G~~L~vH~E~~~~~~~~~~~E~~~i~r~l~~~la~~~g~kI~i~HiSt~~~ve~v~~ak~ 208 (364)
T PLN02599 135 LGKCLPVLEEMAEQGMPLLVHGEVTDPSVDIFDREKVFIDTILAPLVQKLPQLKIVMEHITTMDAVEFVESCGD 208 (364)
T ss_pred HHHHHHHHHHHHhcCCEEEEecCCCcccccccccHHHHHHHHHHHHHHhccCCeEEEEecChHHHHHHHHhccC
Confidence 345555566666789999999997 32 1111111 11 222222 4577899999998775
No 154
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=25.49 E-value=1.1e+02 Score=22.63 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=17.5
Q ss_pred HHcCCeEEEEeCCCCchHHHHHHHHHHHhcCC
Q 023521 117 ERDKACVLVHCMFGKNRSAAIVIAYLMKCKGW 148 (281)
Q Consensus 117 ~~~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~ 148 (281)
+..+.+|+|+|..|. ||. .++..| .+.|.
T Consensus 51 ~~~~~~iv~~c~~g~-~s~-~~~~~L-~~~g~ 79 (99)
T cd01527 51 LVGANAIIFHCRSGM-RTQ-QNAERL-AAISA 79 (99)
T ss_pred CCCCCcEEEEeCCCc-hHH-HHHHHH-HHcCC
Confidence 345689999999984 443 333333 33454
No 155
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=25.12 E-value=41 Score=27.60 Aligned_cols=14 Identities=21% Similarity=0.494 Sum_probs=10.9
Q ss_pred cCCccccccccccc
Q 023521 7 ENPCSVCGHYHKYE 20 (281)
Q Consensus 7 ~~~~~~~~~y~~~e 20 (281)
.-.|..||+....+
T Consensus 70 ~~~C~~CG~~~~~~ 83 (135)
T PRK03824 70 VLKCRNCGNEWSLK 83 (135)
T ss_pred EEECCCCCCEEecc
Confidence 34699999888775
No 156
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=24.95 E-value=64 Score=25.29 Aligned_cols=61 Identities=10% Similarity=0.166 Sum_probs=31.7
Q ss_pred CeEEEEeCCCCchHHHHHHHHH---HHhcCCCH-------HHHHHHHHHhCC-CCcCCHHHHHHHHHHHHHHcC
Q 023521 121 ACVLVHCMFGKNRSAAIVIAYL---MKCKGWRL-------AQSHQWVKERRP-SVNLTEDVHQQLQEYEQKIFG 183 (281)
Q Consensus 121 ~~VLVHC~~G~sRS~tvv~AYL---m~~~g~sl-------~~A~~~Vr~~RP-~i~pn~~f~~qL~~~E~~L~~ 183 (281)
++||+-|.+|++= ++++--+ +..+|.+. .+.-.++..... .+...+....++.++++....
T Consensus 2 kkILlvCg~G~ST--Slla~k~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~PQi~~~~~~i~~~~~~ 73 (104)
T PRK09590 2 KKALIICAAGMSS--SMMAKKTTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVSPQTKMYFKQFEEAGAK 73 (104)
T ss_pred cEEEEECCCchHH--HHHHHHHHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEEChHHHHHHHHHHHHhhh
Confidence 4799999999943 3443332 22344432 222222221122 444566666667777766543
No 157
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=24.71 E-value=2e+02 Score=28.31 Aligned_cols=110 Identities=12% Similarity=0.264 Sum_probs=61.9
Q ss_pred CCCCceEeCCcEEEcCccccCCH-------HHHHhCCCcEEEEcCCCCc--cccCCCceEEeccCCCh------------
Q 023521 45 SAFPSEILPDFLYLGSYDNASRS-------GLLKTQGISRVLNTVPSCQ--NLYKNSFTYHCLEDDKI------------ 103 (281)
Q Consensus 45 ~~~p~eI~p~~LyLGs~~~a~~~-------~~L~~~gIt~IInl~~~~~--~~~~~~~~y~~vp~~~~------------ 103 (281)
..+-+.| +.=||.-....+. ..-.+.|..+|-+|+.... .....-+....+|....
T Consensus 57 ~gl~tKV---NaNIGtS~~~~d~~~E~~K~~~A~~~GADtiMDLStggdl~~iR~~il~~s~vpvGTVPiYqa~~~~~~k 133 (431)
T PRK13352 57 KGLRTKV---NANIGTSSDISDIEEELEKAKVAVKYGADTIMDLSTGGDLDEIRRAIIEASPVPVGTVPIYQAAVEAARK 133 (431)
T ss_pred CCceeEE---eeeecCCCCCCCHHHHHHHHHHHHHcCCCeEeeccCCCCHHHHHHHHHHcCCCCCcChhHHHHHHHHHhc
Confidence 3444555 5556665554444 2224679999999876432 11111111222222211
Q ss_pred ------hhHHHHHHHHHHHHHcCCe-EEEEeC---------------CC-CchHHHHHHHHHHHhcCC-CHHHHHHHH
Q 023521 104 ------LQFDDAIQFLEQCERDKAC-VLVHCM---------------FG-KNRSAAIVIAYLMKCKGW-RLAQSHQWV 157 (281)
Q Consensus 104 ------~~f~~a~~fI~~~~~~g~~-VLVHC~---------------~G-~sRS~tvv~AYLm~~~g~-sl~~A~~~V 157 (281)
-.-++..+-|++..++|-- +-|||. .| +||-++++++|+++...- .|-+-|+++
T Consensus 134 ~~~~~~mt~d~~~~~ie~qa~~GVDfmTiHcGi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~n~~ENPlye~fD~l 211 (431)
T PRK13352 134 YGSVVDMTEDDLFDVIEKQAKDGVDFMTIHCGVTRETLERLKKSGRIMGIVSRGGSFLAAWMLHNNKENPLYEHFDYL 211 (431)
T ss_pred CCChhhCCHHHHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhcCCccCeecCCHHHHHHHHHHcCCcCchHHHHHHH
Confidence 1245566677777777543 889994 12 589999999999987766 344444443
No 158
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=24.60 E-value=1.9e+02 Score=25.41 Aligned_cols=66 Identities=11% Similarity=0.199 Sum_probs=40.9
Q ss_pred CCHHHHHhCCCcEEEEcCC-CCc-cccC-CCceEEeccCCChhhHHHHHHHHHHHHHcCCeEEE-----EeCCCC
Q 023521 65 SRSGLLKTQGISRVLNTVP-SCQ-NLYK-NSFTYHCLEDDKILQFDDAIQFLEQCERDKACVLV-----HCMFGK 131 (281)
Q Consensus 65 ~~~~~L~~~gIt~IInl~~-~~~-~~~~-~~~~y~~vp~~~~~~f~~a~~fI~~~~~~g~~VLV-----HC~~G~ 131 (281)
...+.|+++||++|.=... +.+ .... .-..|..|+. ..-..++..++|+.+++.|-+|++ |+..+-
T Consensus 8 ~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~-~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~~ 81 (316)
T PF00128_consen 8 DKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDP-RFGTMEDFKELVDAAHKRGIKVILDVVPNHTSDDH 81 (316)
T ss_dssp HTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEEST-TTBHHHHHHHHHHHHHHTTCEEEEEEETSEEETTS
T ss_pred HhhHHHHHcCCCceecccccccccccccccceeeecccc-ccchhhhhhhhhhccccccceEEEeeecccccccc
Confidence 3568999999999974321 111 1111 1123434333 234567889999999999999877 776554
No 159
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=24.46 E-value=1.3e+02 Score=21.18 Aligned_cols=27 Identities=33% Similarity=0.458 Sum_probs=17.3
Q ss_pred HcCCeEEEEeCCCCchHHHHHHHHHHHhcC
Q 023521 118 RDKACVLVHCMFGKNRSAAIVIAYLMKCKG 147 (281)
Q Consensus 118 ~~g~~VLVHC~~G~sRS~tvv~AYLm~~~g 147 (281)
..+..|+|+|..|. |+ .. +++.++..|
T Consensus 48 ~~~~~vv~~c~~~~-~a-~~-~~~~l~~~G 74 (89)
T cd00158 48 DKDKPIVVYCRSGN-RS-AR-AAKLLRKAG 74 (89)
T ss_pred CCCCeEEEEeCCCc-hH-HH-HHHHHHHhC
Confidence 46789999999963 33 33 344455455
No 160
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=24.39 E-value=28 Score=33.44 Aligned_cols=16 Identities=38% Similarity=0.939 Sum_probs=12.5
Q ss_pred cccCCccccccccccc
Q 023521 5 ERENPCSVCGHYHKYE 20 (281)
Q Consensus 5 ~~~~~~~~~~~y~~~e 20 (281)
++|.||.|||.|-++-
T Consensus 372 d~ef~CEICgNyvy~G 387 (470)
T COG5188 372 DIEFECEICGNYVYYG 387 (470)
T ss_pred Ccceeeeecccccccc
Confidence 5788999999887754
No 161
>cd01720 Sm_D2 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D2 heterodimerizes with subunit D1 and three such heterodimers form a hexameric ring structure with alternating D1 and D2 subunits. The D1 - D2 heterodimer also assembles into a heptameric ring containing D2, D3, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=24.30 E-value=98 Score=23.52 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCCeEEEEeCCCCchHHH
Q 023521 110 IQFLEQCERDKACVLVHCMFGKNRSAA 136 (281)
Q Consensus 110 ~~fI~~~~~~g~~VLVHC~~G~sRS~t 136 (281)
.++|..+++.+++|+|+++.|..=.|+
T Consensus 4 l~~L~~~~~~~~~V~V~lr~~r~~~G~ 30 (87)
T cd01720 4 LSLLTQAVKNNTQVLINCRNNKKLLGR 30 (87)
T ss_pred HHHHHHHHcCCCEEEEEEcCCCEEEEE
Confidence 467888888899999999999764444
No 162
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=24.29 E-value=2.2e+02 Score=22.98 Aligned_cols=34 Identities=9% Similarity=0.267 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHcCC
Q 023521 150 LAQSHQWVKERRPSVNLTEDVHQQLQEYEQKIFGS 184 (281)
Q Consensus 150 l~~A~~~Vr~~RP~i~pn~~f~~qL~~~E~~L~~~ 184 (281)
.-+.++.+.++.+ +.+...|+..|.+|--.+...
T Consensus 71 al~~vd~fs~~Y~-I~i~~~~W~~Ll~W~~v~s~~ 104 (126)
T PF12921_consen 71 ALKLVDFFSRKYP-IPIPKEFWRRLLEWAYVLSSK 104 (126)
T ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHhcCC
Confidence 3444556677777 888999999999998777554
No 163
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=24.23 E-value=1.7e+02 Score=27.86 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=20.4
Q ss_pred cCCeEEEEeCCCCchHHHHHHHHHHHhcCCC
Q 023521 119 DKACVLVHCMFGKNRSAAIVIAYLMKCKGWR 149 (281)
Q Consensus 119 ~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~s 149 (281)
.+..|+|+|..|=.||..+ ++++...|++
T Consensus 87 ~~~~ivvyC~rgG~RS~~a--a~~L~~~G~~ 115 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSV--QQWLKEAGID 115 (345)
T ss_pred CCCeEEEEECCCChHHHHH--HHHHHHcCCC
Confidence 5788999997655687665 4555666763
No 164
>PRK05569 flavodoxin; Provisional
Probab=24.07 E-value=1.3e+02 Score=23.90 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=42.4
Q ss_pred HHHHHHHHHH---HcCCeEEEEeCCCCc-hHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHc
Q 023521 108 DAIQFLEQCE---RDKACVLVHCMFGKN-RSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKIF 182 (281)
Q Consensus 108 ~a~~fI~~~~---~~g~~VLVHC~~G~s-RS~tvv~AYLm~~~g~sl~~A~~~Vr~~RP~i~pn~~f~~qL~~~E~~L~ 182 (281)
++-.||+... -+|+.|.+.+..|.+ ..+.-.+.-++...|++.-..+. -...|+..-++++++|-++|.
T Consensus 68 ~~~~~~~~l~~~~~~~K~v~~f~t~g~~~~~~~~~~~~~l~~~g~~~~~~~~------~~~~p~~~~~~~~~~~g~~l~ 140 (141)
T PRK05569 68 EMAPFLDQFKLTPNENKKCILFGSYGWDNGEFMKLWKDRMKDYGFNVIGDLA------VNESPNKEELNSAKELGKKLA 140 (141)
T ss_pred HHHHHHHHhhccCcCCCEEEEEeCCCCCCCcHHHHHHHHHHHCCCeEeeeEE------EccCCCHHHHHHHHHHHHHHh
Confidence 3445555443 357899999999876 33332344455667775533211 124588889999888877663
No 165
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=23.84 E-value=3.3e+02 Score=25.27 Aligned_cols=55 Identities=18% Similarity=0.084 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHcCCeEEEEeCCCCc-h-------HHHHHHHHHHHhc--------CCCHHHHHHHHHHhC
Q 023521 107 DDAIQFLEQCERDKACVLVHCMFGKN-R-------SAAIVIAYLMKCK--------GWRLAQSHQWVKERR 161 (281)
Q Consensus 107 ~~a~~fI~~~~~~g~~VLVHC~~G~s-R-------S~tvv~AYLm~~~--------g~sl~~A~~~Vr~~R 161 (281)
....++++.+.+.|..|+|||...-- . -....+.+|.+.. .++-.++++.|++.|
T Consensus 113 ~~l~~~~e~~~~~g~~V~vHaE~~~l~~~~~~~e~~~~~~~~~lA~~~p~~~v~i~Hvst~~~~~~i~~ak 183 (335)
T cd01294 113 EKIYPVLEAMQKLGMPLLVHGEVPDFKIDVLDREAKFIPVLEPLAQRFPKLKIVLEHITTADAVEYVKSCN 183 (335)
T ss_pred HHHHHHHHHHHHcCCeEEEecCCCcccccchhhHHHHHHHHHHHHHHcCCCeEEEecccHHHHHHHHHhCC
Confidence 56677777777889999999976421 0 1123355555543 457889999998877
No 166
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=23.72 E-value=66 Score=23.52 Aligned_cols=13 Identities=38% Similarity=0.457 Sum_probs=11.3
Q ss_pred eEEEEeCCCCchH
Q 023521 122 CVLVHCMFGKNRS 134 (281)
Q Consensus 122 ~VLVHC~~G~sRS 134 (281)
+|||.|.+|++=|
T Consensus 1 kIlvvC~~Gi~TS 13 (90)
T PF02302_consen 1 KILVVCGSGIGTS 13 (90)
T ss_dssp EEEEEESSSSHHH
T ss_pred CEEEECCChHHHH
Confidence 6899999999755
No 167
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=23.59 E-value=50 Score=22.53 Aligned_cols=15 Identities=33% Similarity=0.826 Sum_probs=9.4
Q ss_pred CccccccccccccCC
Q 023521 9 PCSVCGHYHKYEEGE 23 (281)
Q Consensus 9 ~~~~~~~y~~~e~g~ 23 (281)
-|.+||....-+.|+
T Consensus 3 ~C~~CgyiYd~~~Gd 17 (50)
T cd00730 3 ECRICGYIYDPAEGD 17 (50)
T ss_pred CCCCCCeEECCCCCC
Confidence 488999555544554
No 168
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=23.15 E-value=27 Score=22.97 Aligned_cols=27 Identities=22% Similarity=0.568 Sum_probs=13.5
Q ss_pred ccccccccccccCCccccCCCCCCCCc
Q 023521 10 CSVCGHYHKYEEGEVCGICGHRSASSA 36 (281)
Q Consensus 10 ~~~~~~y~~~e~g~~~~~cg~~~~~~~ 36 (281)
|.||-++..-++-.+-..|||.+....
T Consensus 1 CpIc~e~~~~~n~P~~L~CGH~~c~~c 27 (43)
T PF13445_consen 1 CPICKEFSTEENPPMVLPCGHVFCKDC 27 (43)
T ss_dssp -TTT----TTSS-EEE-SSS-EEEHHH
T ss_pred CCccccccCCCCCCEEEeCccHHHHHH
Confidence 778888655556666677999987543
No 169
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=23.05 E-value=1.1e+02 Score=25.48 Aligned_cols=59 Identities=15% Similarity=0.129 Sum_probs=31.4
Q ss_pred ccCCHHHHHhCCCcEEEEcCCCCccccCCCceEEeccCC---ChhhHHHHHHHHHHHHHcCCeEEEEeCCCCchHHH
Q 023521 63 NASRSGLLKTQGISRVLNTVPSCQNLYKNSFTYHCLEDD---KILQFDDAIQFLEQCERDKACVLVHCMFGKNRSAA 136 (281)
Q Consensus 63 ~a~~~~~L~~~gIt~IInl~~~~~~~~~~~~~y~~vp~~---~~~~f~~a~~fI~~~~~~g~~VLVHC~~G~sRS~t 136 (281)
+.+..+.+++-+|.+.||+-... .+.. ..+.|.+-+.+..- .....++|+|+.|. ||..
T Consensus 43 DVRepeEfk~gh~~~siNiPy~~------------~~~~~~l~~~eF~kqvg~~kp--~~d~eiIf~C~SG~-Rs~~ 104 (136)
T KOG1530|consen 43 DVREPEEFKQGHIPASINIPYMS------------RPGAGALKNPEFLKQVGSSKP--PHDKEIIFGCASGV-RSLK 104 (136)
T ss_pred eecCHHHhhccCCcceEeccccc------------cccccccCCHHHHHHhcccCC--CCCCcEEEEeccCc-chhH
Confidence 34566777777777777764321 1111 12333333332221 12357999999994 7643
No 170
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=22.96 E-value=85 Score=23.88 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=12.7
Q ss_pred CeEEEEeCCCCchHHH
Q 023521 121 ACVLVHCMFGKNRSAA 136 (281)
Q Consensus 121 ~~VLVHC~~G~sRS~t 136 (281)
.+|||-|.+|++=|-.
T Consensus 3 ~kILvvCgsG~~TS~m 18 (94)
T PRK10310 3 RKIIVACGGAVATSTM 18 (94)
T ss_pred CeEEEECCCchhHHHH
Confidence 3799999999986643
No 171
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=22.80 E-value=1.9e+02 Score=26.57 Aligned_cols=36 Identities=8% Similarity=0.128 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHcCCeEEEEeCCCCchHHHHHHHHHH
Q 023521 108 DAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLM 143 (281)
Q Consensus 108 ~a~~fI~~~~~~g~~VLVHC~~G~sRS~tvv~AYLm 143 (281)
+.++.|.+.+.+|+.+++.-..|.|.|.+++++.|.
T Consensus 15 ~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~ 50 (289)
T smart00488 15 EFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLT 50 (289)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHH
Confidence 345556666778899999999999999887777654
No 172
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=22.80 E-value=1.9e+02 Score=26.57 Aligned_cols=36 Identities=8% Similarity=0.128 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHcCCeEEEEeCCCCchHHHHHHHHHH
Q 023521 108 DAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLM 143 (281)
Q Consensus 108 ~a~~fI~~~~~~g~~VLVHC~~G~sRS~tvv~AYLm 143 (281)
+.++.|.+.+.+|+.+++.-..|.|.|.+++++.|.
T Consensus 15 ~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~ 50 (289)
T smart00489 15 EFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLT 50 (289)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHH
Confidence 345556666778899999999999999887777654
No 173
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=22.74 E-value=2.3e+02 Score=26.74 Aligned_cols=71 Identities=17% Similarity=0.202 Sum_probs=38.6
Q ss_pred EEcCccccCCHHHH-HhCCCcEEEEcCCCCccccCCCceEEeccCCChhhHHHHHHHHHHHHH--cCCeEEEEeCCCC
Q 023521 57 YLGSYDNASRSGLL-KTQGISRVLNTVPSCQNLYKNSFTYHCLEDDKILQFDDAIQFLEQCER--DKACVLVHCMFGK 131 (281)
Q Consensus 57 yLGs~~~a~~~~~L-~~~gIt~IInl~~~~~~~~~~~~~y~~vp~~~~~~f~~a~~fI~~~~~--~g~~VLVHC~~G~ 131 (281)
-+|-+..+.++..+ .+.+ +-|||+....+... ..|+ .--+.++..|.+.-.+|++.+. ++++|+..|+.|+
T Consensus 110 ~vG~yl~p~~wn~~l~D~~-~vviDtRN~YE~~i-G~F~--gAv~p~~~tFrefP~~v~~~~~~~~~KkVvmyCTGGI 183 (308)
T COG1054 110 NVGTYLSPKDWNELLSDPD-VVVIDTRNDYEVAI-GHFE--GAVEPDIETFREFPAWVEENLDLLKDKKVVMYCTGGI 183 (308)
T ss_pred cccCccCHHHHHHHhcCCC-eEEEEcCcceeEee-eeec--CccCCChhhhhhhHHHHHHHHHhccCCcEEEEcCCce
Confidence 33555555555333 3444 66677654422110 0010 0011235567777777776554 4789999999997
No 174
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=22.36 E-value=2.4e+02 Score=25.33 Aligned_cols=58 Identities=10% Similarity=0.139 Sum_probs=35.5
Q ss_pred HHHHhCCCcEEEEcCCCCccccCCCceEEeccCCChhhHHHHHHHHHHHHHcCCeEEEEeCCCCc
Q 023521 68 GLLKTQGISRVLNTVPSCQNLYKNSFTYHCLEDDKILQFDDAIQFLEQCERDKACVLVHCMFGKN 132 (281)
Q Consensus 68 ~~L~~~gIt~IInl~~~~~~~~~~~~~y~~vp~~~~~~f~~a~~fI~~~~~~g~~VLVHC~~G~s 132 (281)
+.|.+.||.-.|.+.+......... +..+..-.+.++.|+.+..+|+.|++|=..-..
T Consensus 23 d~l~~~~ipf~v~vIP~~~d~~~~~-------~~~l~~~~~f~~~L~~~~~~Gg~I~lHGYtHq~ 80 (243)
T PF10096_consen 23 DYLYKYGIPFSVAVIPVYVDPNGGI-------TVNLSDNPEFVEYLRYLQARGGEIVLHGYTHQY 80 (243)
T ss_pred HHHHHCCCCEEEEEEecccCCCCcc-------cccchhhHHHHHHHHHHHhcCCEEEEEecceec
Confidence 5677889988887765432111111 111233455667777777899999999764444
No 175
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=22.23 E-value=2.4e+02 Score=27.70 Aligned_cols=103 Identities=16% Similarity=0.224 Sum_probs=58.5
Q ss_pred cEEEcCccccCCH-------HHHHhCCCcEEEEcCCCCc--cccCCCceEEeccCCCh---------------hhHHHHH
Q 023521 55 FLYLGSYDNASRS-------GLLKTQGISRVLNTVPSCQ--NLYKNSFTYHCLEDDKI---------------LQFDDAI 110 (281)
Q Consensus 55 ~LyLGs~~~a~~~-------~~L~~~gIt~IInl~~~~~--~~~~~~~~y~~vp~~~~---------------~~f~~a~ 110 (281)
+.=||.-....+. ..-.+.|-.+|-+|+.... .....-+....+|.... -.-++..
T Consensus 64 NaNIGtS~~~~d~~~E~~K~~~A~~~GADtiMDLStGgdl~~iR~~il~~s~vpvGTVPiYqa~~~~~~~~~~mt~d~~~ 143 (423)
T TIGR00190 64 NANIGTSADTSDIEEEVEKALIAIKYGADTVMDLSTGGDLDEIRKAILDAVPVPVGTVPIYQAAEKVHGAVEDMDEDDMF 143 (423)
T ss_pred EeeecCCCCCCCHHHHHHHHHHHHHcCCCeEeeccCCCCHHHHHHHHHHcCCCCccCccHHHHHHHhcCChhhCCHHHHH
Confidence 4556655444443 2224678999999876432 11111111222222211 1245666
Q ss_pred HHHHHHHHcCCe-EEEEeC---------------CC-CchHHHHHHHHHHHhcCC-CHHHHHHHH
Q 023521 111 QFLEQCERDKAC-VLVHCM---------------FG-KNRSAAIVIAYLMKCKGW-RLAQSHQWV 157 (281)
Q Consensus 111 ~fI~~~~~~g~~-VLVHC~---------------~G-~sRS~tvv~AYLm~~~g~-sl~~A~~~V 157 (281)
+.|++..++|-- +-|||. .| +||-++++++|+++...- .|-+-|+++
T Consensus 144 ~~ie~qa~dGVDfmTiH~Gi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~~~~ENPlye~fD~l 208 (423)
T TIGR00190 144 RAIEKQAKDGVDFMTIHAGVLLEYVERLKRSGRITGIVSRGGAILAAWMLHHHKENPLYKNFDYI 208 (423)
T ss_pred HHHHHHHHhCCCEEEEccchhHHHHHHHHhCCCccCeecCcHHHHHHHHHHcCCcCchHHHHHHH
Confidence 777777777543 888995 12 689999999999997766 344444433
No 176
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=22.23 E-value=1.7e+02 Score=27.42 Aligned_cols=28 Identities=32% Similarity=0.528 Sum_probs=18.2
Q ss_pred CCeEEEEeCCCCchHHHHHHHHHHHhcCCC
Q 023521 120 KACVLVHCMFGKNRSAAIVIAYLMKCKGWR 149 (281)
Q Consensus 120 g~~VLVHC~~G~sRS~tvv~AYLm~~~g~s 149 (281)
+..|+|+|..|=.||..+ +++++..|++
T Consensus 74 ~~~vvvyC~~gG~RS~~a--a~~L~~~G~~ 101 (311)
T TIGR03167 74 PPQPLLYCWRGGMRSGSL--AWLLAQIGFR 101 (311)
T ss_pred CCcEEEEECCCChHHHHH--HHHHHHcCCC
Confidence 345999996544677654 4556667763
No 177
>PRK12286 rpmF 50S ribosomal protein L32; Reviewed
Probab=21.93 E-value=43 Score=23.47 Aligned_cols=21 Identities=33% Similarity=0.743 Sum_probs=14.4
Q ss_pred CCccccccccccccCCccccCCC
Q 023521 8 NPCSVCGHYHKYEEGEVCGICGH 30 (281)
Q Consensus 8 ~~~~~~~~y~~~e~g~~~~~cg~ 30 (281)
..|..||++.. .--+|+.||.
T Consensus 28 ~~C~~CG~~~~--~H~vC~~CG~ 48 (57)
T PRK12286 28 VECPNCGEPKL--PHRVCPSCGY 48 (57)
T ss_pred eECCCCCCccC--CeEECCCCCc
Confidence 35777887777 5667777763
No 178
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=21.72 E-value=1.5e+02 Score=27.56 Aligned_cols=34 Identities=32% Similarity=0.484 Sum_probs=22.7
Q ss_pred HHHHHHHHHHH----HHcCC---eEEEEeCCCCchHHHHHH
Q 023521 106 FDDAIQFLEQC----ERDKA---CVLVHCMFGKNRSAAIVI 139 (281)
Q Consensus 106 f~~a~~fI~~~----~~~g~---~VLVHC~~G~sRS~tvv~ 139 (281)
++.+.++++.+ .++|+ .|-|=|+.|.-||.+++-
T Consensus 224 ~~~~~~~~~~~~~~~~~~g~~~~~i~igCtGG~HRSV~~~e 264 (288)
T PRK05416 224 LDKIRDLLEFWLPGYEREGKSYLTIAIGCTGGQHRSVAIAE 264 (288)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEecCCCcccHHHHHH
Confidence 44445555443 33444 388999999999988753
No 179
>PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.
Probab=21.44 E-value=2.1e+02 Score=22.69 Aligned_cols=76 Identities=12% Similarity=0.056 Sum_probs=50.2
Q ss_pred ccccCCCCceEeCCcEEEcCccccCCHHHHHhCCCcEEEEcCCCCccccCCCceEEeccCCC---hhhHHHHHHHHHHHH
Q 023521 41 TLQVSAFPSEILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQNLYKNSFTYHCLEDDK---ILQFDDAIQFLEQCE 117 (281)
Q Consensus 41 ~~~~~~~p~eI~p~~LyLGs~~~a~~~~~L~~~gIt~IInl~~~~~~~~~~~~~y~~vp~~~---~~~f~~a~~fI~~~~ 117 (281)
..+|+.-.++|.+ .+.+.|.+.+|+.|+-...... -..-.+.|-.++.+. .+.++++++......
T Consensus 31 ~~aDG~DvSWiWD-----------vdFE~L~~~~i~~viv~G~Ra~-DmalRLkyAGv~~~~i~v~~d~~~a~~~~~~~~ 98 (113)
T PF08353_consen 31 NYADGRDVSWIWD-----------VDFEKLADPNIKQVIVSGTRAE-DMALRLKYAGVDEEKIIVEEDLEEALDAFLIKS 98 (113)
T ss_pred CCCCCccceEEee-----------cCHHHHhcCCCCEEEEEeeeHH-HHHhHeeecCcchHHeEecCCHHHHHHHHHHhc
Confidence 3456667788888 7889999999999987544321 112345677777442 467788887744445
Q ss_pred HcCCeEEEEeC
Q 023521 118 RDKACVLVHCM 128 (281)
Q Consensus 118 ~~g~~VLVHC~ 128 (281)
..+++++|-+.
T Consensus 99 ~~~~~~yil~t 109 (113)
T PF08353_consen 99 DPTDKVYILAT 109 (113)
T ss_pred CCCCcEEEEEC
Confidence 55677877653
No 180
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=21.33 E-value=4.1e+02 Score=25.65 Aligned_cols=68 Identities=22% Similarity=0.335 Sum_probs=44.4
Q ss_pred eccCCChhhHHHHHHHHHHHHHc-CCeEEEEeC----CCCchHHHHHHHHHHHhcCC--CHHHHHHHHHHhCCCCcCCHH
Q 023521 97 CLEDDKILQFDDAIQFLEQCERD-KACVLVHCM----FGKNRSAAIVIAYLMKCKGW--RLAQSHQWVKERRPSVNLTED 169 (281)
Q Consensus 97 ~vp~~~~~~f~~a~~fI~~~~~~-g~~VLVHC~----~G~sRS~tvv~AYLm~~~g~--sl~~A~~~Vr~~RP~i~pn~~ 169 (281)
+|+--+.....+|.+|-.+...+ .+++++-|. .|.| |-.-|- ...|.++.||.+|-. -..
T Consensus 253 ~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYRy~GHS----------mSDPg~sYRtReEiq~vR~kRDP---I~~ 319 (394)
T KOG0225|consen 253 KVDGMDVLAVREATKFAKKYALEGKGPILMEMDTYRYHGHS----------MSDPGTSYRTREEIQEVRQKRDP---IEG 319 (394)
T ss_pred EECCcchhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecccc----------cCCCCcccchHHHHHHHHhccCh---HHH
Confidence 33334566788999998876665 789999886 4544 223333 567899999988843 344
Q ss_pred HHHHHHHH
Q 023521 170 VHQQLQEY 177 (281)
Q Consensus 170 f~~qL~~~ 177 (281)
+.++|.++
T Consensus 320 lk~~li~~ 327 (394)
T KOG0225|consen 320 LKKRLIEL 327 (394)
T ss_pred HHHHHHHh
Confidence 44444443
No 181
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=21.30 E-value=1.2e+02 Score=23.02 Aligned_cols=28 Identities=18% Similarity=0.352 Sum_probs=19.2
Q ss_pred cCCeEEEEeCCCCchHHHHHHHHHHHhcCCC
Q 023521 119 DKACVLVHCMFGKNRSAAIVIAYLMKCKGWR 149 (281)
Q Consensus 119 ~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~s 149 (281)
.+..|+|+|..|. ||.. ++++++..|..
T Consensus 77 ~~~~iv~yc~~g~-~s~~--~~~~l~~~G~~ 104 (118)
T cd01449 77 PDKPVIVYCGSGV-TACV--LLLALELLGYK 104 (118)
T ss_pred CCCCEEEECCcHH-HHHH--HHHHHHHcCCC
Confidence 5678999999874 5543 35556666763
No 182
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=21.23 E-value=89 Score=32.15 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=29.2
Q ss_pred CeEEEEeCCCCchHHHHHHHHHHH---hcCCCHHHHHHHHHH
Q 023521 121 ACVLVHCMFGKNRSAAIVIAYLMK---CKGWRLAQSHQWVKE 159 (281)
Q Consensus 121 ~~VLVHC~~G~sRS~tvv~AYLm~---~~g~sl~~A~~~Vr~ 159 (281)
.+.+|||..|. +++++++||+ ..+++.++|++.++.
T Consensus 161 ~pdviH~ND~H---tal~~~el~r~l~~~~~~~~~a~~~~~~ 199 (601)
T TIGR02094 161 DPDVYHLNEGH---AAFVTLERIRELIAQGLSFEEAWEAVRK 199 (601)
T ss_pred CceEEEeCCch---HHHHHHHHHHHHHHcCCCHHHHHHhcCC
Confidence 67999999996 5899999865 457889999877664
No 183
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=21.00 E-value=99 Score=28.91 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=17.9
Q ss_pred HcCCeEEEEeCCCCchHHHHHHHHHHHhcCC
Q 023521 118 RDKACVLVHCMFGKNRSAAIVIAYLMKCKGW 148 (281)
Q Consensus 118 ~~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~ 148 (281)
..+..|+|+|..|+ | ++++ +++++..|+
T Consensus 267 ~~~~~iv~yC~sG~-~-A~~~-~~~L~~~G~ 294 (320)
T PLN02723 267 SLDSPIVASCGTGV-T-ACIL-ALGLHRLGK 294 (320)
T ss_pred CCCCCEEEECCcHH-H-HHHH-HHHHHHcCC
Confidence 45688999998875 3 3333 344455666
No 184
>KOG3153 consensus Thiamine pyrophosphokinase [Coenzyme transport and metabolism]
Probab=20.88 E-value=2.4e+02 Score=25.63 Aligned_cols=36 Identities=11% Similarity=0.220 Sum_probs=26.5
Q ss_pred EEeccCCChhhHHHHHHHHHHHHHcC----CeEEEEeCCC
Q 023521 95 YHCLEDDKILQFDDAIQFLEQCERDK----ACVLVHCMFG 130 (281)
Q Consensus 95 y~~vp~~~~~~f~~a~~fI~~~~~~g----~~VLVHC~~G 130 (281)
....|+.+.-+|..++++|.....+. ..|+|-|..|
T Consensus 97 vV~~pdQd~TDftKcv~~i~~~~~~~e~~~~~Ivvlgglg 136 (250)
T KOG3153|consen 97 VVHTPDQDTTDFTKCVKWIQEHKTLTEWKFLNIVVLGGLG 136 (250)
T ss_pred eEeCCCcCcchHHHHHHHHHHhcccccceeeeEEEecccC
Confidence 33568888889999999999876542 2377777655
No 185
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=20.86 E-value=1.7e+02 Score=27.62 Aligned_cols=32 Identities=19% Similarity=0.156 Sum_probs=27.4
Q ss_pred eCCCCchHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 023521 127 CMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKE 159 (281)
Q Consensus 127 C~~G~sRS~tvv~AYLm~~~g~sl~~A~~~Vr~ 159 (281)
++-|++|. +.=++.+++...||-++|++.|+.
T Consensus 283 ~KfG~~~~-~~~~s~~IR~G~itReeal~~v~~ 314 (343)
T TIGR03573 283 LKFGFGRA-TDHASIDIRSGRITREEAIELVKE 314 (343)
T ss_pred hhcCCCcC-chHHHHHHHcCCCCHHHHHHHHHH
Confidence 46789977 555688999999999999999999
No 186
>TIGR00615 recR recombination protein RecR. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.74 E-value=53 Score=28.93 Aligned_cols=26 Identities=42% Similarity=0.958 Sum_probs=19.2
Q ss_pred ccccCCccccccccccccCCccccCCCCC
Q 023521 4 RERENPCSVCGHYHKYEEGEVCGICGHRS 32 (281)
Q Consensus 4 ~~~~~~~~~~~~y~~~e~g~~~~~cg~~~ 32 (281)
++.--.|.+|+.+. +.+.|.+|....
T Consensus 50 ~~~i~~C~~C~~ls---e~~~C~IC~d~~ 75 (195)
T TIGR00615 50 KENLRTCSVCGAIS---DQEVCNICSDER 75 (195)
T ss_pred HHcCCcCCCCCCCC---CCCcCCCCCCCC
Confidence 34556899999776 578999995443
No 187
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=20.64 E-value=1.1e+02 Score=24.07 Aligned_cols=25 Identities=16% Similarity=0.399 Sum_probs=16.5
Q ss_pred HcCCeEEEEeC-CCCchHHHHHHHHHHH
Q 023521 118 RDKACVLVHCM-FGKNRSAAIVIAYLMK 144 (281)
Q Consensus 118 ~~g~~VLVHC~-~G~sRS~tvv~AYLm~ 144 (281)
..+..|+|||. .| .||+. ++.+|..
T Consensus 66 ~~~~~vv~yC~~sg-~rs~~-aa~~L~~ 91 (121)
T cd01530 66 KKRRVLIFHCEFSS-KRGPR-MARHLRN 91 (121)
T ss_pred CCCCEEEEECCCcc-ccHHH-HHHHHHH
Confidence 45788999997 66 56644 4445544
No 188
>PF14420 Clr5: Clr5 domain
Probab=20.63 E-value=2.8e+02 Score=18.82 Aligned_cols=33 Identities=9% Similarity=0.127 Sum_probs=22.4
Q ss_pred hcCCCHHHHHHHHHHhCCCCcCCHHHHHHHHHH
Q 023521 145 CKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEY 177 (281)
Q Consensus 145 ~~g~sl~~A~~~Vr~~RP~i~pn~~f~~qL~~~ 177 (281)
..+++|++..++++...-...-...+..+|.+|
T Consensus 18 ~e~~tl~~v~~~M~~~~~F~at~rqy~~r~~~W 50 (54)
T PF14420_consen 18 DENKTLEEVMEIMKEEHGFKATKRQYKRRFKKW 50 (54)
T ss_pred hCCCcHHHHHHHHHHHhCCCcCHHHHHHHHHHc
Confidence 579999999999988764333333455566655
No 189
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=20.49 E-value=4.5e+02 Score=26.19 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=16.6
Q ss_pred HHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHcCCC
Q 023521 151 AQSHQWVKERRPSVNLTEDVHQQLQEYEQKIFGSV 185 (281)
Q Consensus 151 ~~A~~~Vr~~RP~i~pn~~f~~qL~~~E~~L~~~~ 185 (281)
...++|||... ..+..|++|=++-+...
T Consensus 183 ~~hveWvKa~l-------~l~~eL~~YVk~hhtTG 210 (480)
T KOG2675|consen 183 PRHVEWVKAYL-------ALFLELQAYVKEHHTTG 210 (480)
T ss_pred hhHHHHHHHHH-------HHHHHHHHHHHHhcccc
Confidence 55677777665 34445666665555443
No 190
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=20.34 E-value=2e+02 Score=25.02 Aligned_cols=40 Identities=25% Similarity=0.229 Sum_probs=26.3
Q ss_pred HHHHHHHHHcCCeEEEEeCCCCchHHHHHHHHHHHhcCCC
Q 023521 110 IQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWR 149 (281)
Q Consensus 110 ~~fI~~~~~~g~~VLVHC~~G~sRS~tvv~AYLm~~~g~s 149 (281)
.++|.+....+.+|+|-|-.|.+=.=.+++|-++...+++
T Consensus 35 a~~i~~~~~~~~~v~vl~G~GNNGGDGlv~AR~L~~~~v~ 74 (205)
T TIGR00197 35 AQAVLQAFPLAGHVIIFCGPGNNGGDGFVVARHLKGFGVE 74 (205)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCccHHHHHHHHHHhCCCE
Confidence 3444443345678999999998877666666666545543
No 191
>PRK05568 flavodoxin; Provisional
Probab=20.21 E-value=1.7e+02 Score=23.24 Aligned_cols=68 Identities=9% Similarity=0.009 Sum_probs=39.4
Q ss_pred HHHHHHHHH--HcCCeEEEEeCCCCc-hHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHH
Q 023521 109 AIQFLEQCE--RDKACVLVHCMFGKN-RSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKI 181 (281)
Q Consensus 109 a~~fI~~~~--~~g~~VLVHC~~G~s-RS~tvv~AYLm~~~g~sl~~A~~~Vr~~RP~i~pn~~f~~qL~~~E~~L 181 (281)
+..|++... .+++++.+.+..|.+ ..+.-.++-.+...|+.+-..- + +-...|+..-++++++|-+.|
T Consensus 69 ~~~f~~~~~~~~~~k~~~~f~t~G~~~~~~~~~~~~~l~~~g~~~~~~~--~---~~~~~p~~~~l~~~~~~g~~l 139 (142)
T PRK05568 69 MEPFVESISSLVKGKKLVLFGSYGWGDGEWMRDWVERMEGYGANLVNEG--L---IVNNTPEGEGIEKCKALGEAL 139 (142)
T ss_pred HHHHHHHhhhhhCCCEEEEEEccCCCCChHHHHHHHHHHHCCCEEeCCc--E---EEecCCCHHHHHHHHHHHHHH
Confidence 445555543 267889999998875 3233333333466666433220 1 111257888888888887666
No 192
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=20.14 E-value=1.2e+02 Score=23.62 Aligned_cols=62 Identities=15% Similarity=0.166 Sum_probs=34.5
Q ss_pred CCeEEEEeCCCCchHHHH-HHHHHHHhcCCCHH-HH--HHHHHHhC---CCCcCCHHHHHHHHHHHHHH
Q 023521 120 KACVLVHCMFGKNRSAAI-VIAYLMKCKGWRLA-QS--HQWVKERR---PSVNLTEDVHQQLQEYEQKI 181 (281)
Q Consensus 120 g~~VLVHC~~G~sRS~tv-v~AYLm~~~g~sl~-~A--~~~Vr~~R---P~i~pn~~f~~qL~~~E~~L 181 (281)
.++||+.|..|+|=|-.+ =+--....+|++++ +| ...+.... -.+.+.|.+..++.+.++..
T Consensus 3 ~kkIllvC~~G~sTSll~~km~~~~~~~gi~~~V~A~~~~~~~~~~~~~DviLl~Pqi~~~~~~i~~~~ 71 (106)
T PRK10499 3 KKHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLLGPQIAYMLPEIQRLL 71 (106)
T ss_pred CCEEEEECCCCccHHHHHHHHHHHHHHCCCCEEEEEeecchhhccccCCCEEEECHHHHHHHHHHHhhc
Confidence 358999999999866443 22223355666432 12 22222222 24555777777777665544
No 193
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=20.09 E-value=1.3e+02 Score=28.74 Aligned_cols=57 Identities=21% Similarity=0.313 Sum_probs=32.5
Q ss_pred HcCCeEEEEeCCCCchH----HHHHHHHHHHhcCCCHH---------------HHHHHHHHhCCCCcCCHHHHHHH
Q 023521 118 RDKACVLVHCMFGKNRS----AAIVIAYLMKCKGWRLA---------------QSHQWVKERRPSVNLTEDVHQQL 174 (281)
Q Consensus 118 ~~g~~VLVHC~~G~sRS----~tvv~AYLm~~~g~sl~---------------~A~~~Vr~~RP~i~pn~~f~~qL 174 (281)
.++..||-||.+|-=-+ .++.+-+.++..|.... .|+++++..=|.-.+.+.-...+
T Consensus 148 ~~~~~VLThCNaGaLAt~~~GTAlgviR~a~~~gk~i~v~a~ETRP~lQGARLTawEL~~~GIpvtLItD~aag~~ 223 (346)
T COG0182 148 PDGDTVLTHCNAGALATVGYGTALGVIRSAHEEGKDIRVFADETRPYLQGARLTAWELVQDGIPVTLITDNAAGHL 223 (346)
T ss_pred ccCCeEEeeecCCceeecCccchHHHHHHHHHCCCeeEEEeCCCccccccceeeHHHHhhcCCceEEEeccHHHHH
Confidence 36889999999883222 24555566776664321 45555555555544444433333
No 194
>PF01783 Ribosomal_L32p: Ribosomal L32p protein family; InterPro: IPR002677 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L32p is part of the 50S ribosomal subunit. This family is found in both prokaryotes and eukaryotes. Ribosomal protein L32 of yeast binds to and regulates the splicing and the translation of the transcript of its own gene [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit; PDB: 3PYT_2 3F1F_5 3PYV_2 3D5B_5 3MRZ_2 3D5D_5 3F1H_5 1VSP_Y 3PYR_2 3MS1_2 ....
Probab=20.03 E-value=63 Score=22.36 Aligned_cols=21 Identities=33% Similarity=0.741 Sum_probs=16.0
Q ss_pred CCccccccccccccCCccccCCC
Q 023521 8 NPCSVCGHYHKYEEGEVCGICGH 30 (281)
Q Consensus 8 ~~~~~~~~y~~~e~g~~~~~cg~ 30 (281)
..|..||+++. ..-+|+-||.
T Consensus 27 ~~c~~cg~~~~--~H~vc~~cG~ 47 (56)
T PF01783_consen 27 VKCPNCGEPKL--PHRVCPSCGY 47 (56)
T ss_dssp EESSSSSSEES--TTSBCTTTBB
T ss_pred eeeccCCCEec--ccEeeCCCCe
Confidence 35888998887 6778888873
Done!