RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 023522
         (281 letters)



>d1iuqa_ c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransferase
           {Cushaw squash (Cucurbita moschata) [TaxId: 3662]}
          Length = 367

 Score = 79.7 bits (196), Expect = 1e-17
 Identities = 28/211 (13%), Positives = 61/211 (28%), Gaps = 33/211 (15%)

Query: 37  LNTTSVHNADTLINLVQSRPQGVPLISVSNHMSTLDDPVMWGFRGFPTMDAELARWVL-A 95
              + V N     ++ +   QG  ++ +SNH +  D  ++         +  +A   +  
Sbjct: 108 FGNSFVGNLSLFKDIEEKLQQGHNVVLISNHQTEADPAIISLL--LEKTNPYIAENTIFV 165

Query: 96  AEDICFKNSILSYFFRVGKCIPITRGGGIYQEHMNEALERLSDGAWLHT----------- 144
           A D    + +   F      I +     ++        +R ++   L             
Sbjct: 166 AGDRVLADPLCKPFSIGRNLICVYSKKHMFDIPELTETKRKANTRSLKEMALLLRGGSQL 225

Query: 145 ---FPEGKVSQED--------APIRQLKWGTASLIVRAPVTPI-VLPIVHRGFEEVMP-- 190
               P G   + D        AP           +++    P  + P+     + + P  
Sbjct: 226 IWIAPSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLALLCHDIMPPPS 285

Query: 191 --ENFLFGRRPPVPLFNKRISIVVGEPIEFD 219
             E  +  +R           + V   I F+
Sbjct: 286 QVEIEIGEKRVI---AFNGAGLSVAPEISFE 313


>d2phpa1 c.74.1.2 (A:241-420) Uncharacterized protein MJ0236
           {Methanocaldococcus jannaschii [TaxId: 2190]}
          Length = 180

 Score = 27.1 bits (60), Expect = 1.7
 Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 8/75 (10%)

Query: 125 YQEHMNEALERLSDGAWLHTFPEGKVSQEDAPIRQLKWGTASLIVRAPVTPIVLPIVHRG 184
           Y   + + L+     +           +E   +  ++WGT     +    P +  I  RG
Sbjct: 97  YDGGLIKLLKDKFAVSSF------DRKEEPPNVSTMEWGTKIACEKFGGVPDI--IYDRG 148

Query: 185 FEEVMPENFLFGRRP 199
            E   P   + GR  
Sbjct: 149 GEGKEPMIRVLGRDA 163


>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein
          vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 54

 Score = 23.5 bits (51), Expect = 6.5
 Identities = 7/17 (41%), Positives = 8/17 (47%)

Query: 82 FPTMDAELARWVLAAED 98
          FP MD  L   V  A+ 
Sbjct: 23 FPDMDPSLIEDVCIAKK 39


>d1jnrb_ d.58.1.5 (B:) Adenylylsulfate reductase B subunit {Archaeon
           Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 149

 Score = 25.2 bits (54), Expect = 6.7
 Identities = 11/50 (22%), Positives = 15/50 (30%)

Query: 124 IYQEHMNEALERLSDGAWLHTFPEGKVSQEDAPIRQLKWGTASLIVRAPV 173
                    +   SD  W   +  GKV +    IR   WG+       P 
Sbjct: 70  SPLGGACVPMRGTSDIMWTVKYRNGKVLRFKFAIRTTPWGSIQPFEGFPE 119


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.427 

Gapped
Lambda     K      H
   0.267   0.0610    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,068,272
Number of extensions: 49555
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 5
Length of query: 281
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 197
Effective length of database: 1,254,276
Effective search space: 247092372
Effective search space used: 247092372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.1 bits)