BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023523
(281 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|356557404|ref|XP_003547006.1| PREDICTED: transcription initiation factor IIA large subunit-like
[Glycine max]
Length = 390
Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 169/254 (66%), Positives = 192/254 (75%), Gaps = 29/254 (11%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVI---IDRT 56
MA S T VYI VIEDV+ KVRDEFVNNG PGE VL ELQ +WE KM+QAG + I+R+
Sbjct: 1 MAASTTSQVYIDVIEDVMVKVRDEFVNNGGPGEEVLKELQAMWESKMMQAGAVLGPIERS 60
Query: 57 SAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGST 116
SA K PGGPITPVHDLNVPYEGTEEYETPTA++LFPPTPLQTPIQ
Sbjct: 61 SAAKA-TPGGPITPVHDLNVPYEGTEEYETPTADMLFPPTPLQTPIQ------------- 106
Query: 117 PLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNP 176
TPLPGT DNSTYNIPTG++DYP+ +D+GGN + K RP+ YM P SPWMN
Sbjct: 107 -----TPLPGTGDNSTYNIPTGANDYPSSGNDTGGNADGKG--ARPAPYM-QPSSPWMNQ 158
Query: 177 RPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQD 236
RPPL DVNVAYVEGRDEAD+GTS+QPLTQDFFT ++GKRKR D +QY+ GGY IPQQD
Sbjct: 159 RPPL--DVNVAYVEGRDEADKGTSNQPLTQDFFTRTSGKRKRNDLTSQYNVGGY-IPQQD 215
Query: 237 GAGDAMSEIFELEV 250
GAGDA +FE+EV
Sbjct: 216 GAGDAAHGVFEIEV 229
>gi|255558990|ref|XP_002520518.1| protein with unknown function [Ricinus communis]
gi|223540360|gb|EEF41931.1| protein with unknown function [Ricinus communis]
Length = 383
Score = 310 bits (794), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 170/246 (69%), Positives = 196/246 (79%), Gaps = 30/246 (12%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI---IDRTSAPKQPAPG 65
VYI VIEDV++KVRDEF+NNGPGE+VLNELQ IWE+KM+QAGVI I+R+S K PG
Sbjct: 11 VYIHVIEDVVNKVRDEFINNGPGETVLNELQAIWELKMMQAGVICGPIERSSGAKT-VPG 69
Query: 66 GPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGSTPLP 125
G ITPVHDLNVPYEGTEEYETPTAEILFPP TPLPG+ TPLP
Sbjct: 70 GVITPVHDLNVPYEGTEEYETPTAEILFPP--------TPLPGT----------AQTPLP 111
Query: 126 GTADNST-YNIPTG-SSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPRPPLSVD 183
G+ DNS+ YNIPTG +S+YPTP SDSGG+TEAK+ GRPS YM PPSPW+N RPPL D
Sbjct: 112 GSVDNSSMYNIPTGPTSEYPTPVSDSGGSTEAKA--GRPSPYM-QPPSPWINQRPPL--D 166
Query: 184 VNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDGAGDAMS 243
VN+AYVEGR+EADRGTS+QPLTQDFFT ++GKRKREDF AQY+NGG+ IPQQDGAGD
Sbjct: 167 VNIAYVEGREEADRGTSNQPLTQDFFTGASGKRKREDFAAQYNNGGF-IPQQDGAGDTPF 225
Query: 244 EIFELE 249
E+ ++E
Sbjct: 226 EVLQVE 231
>gi|356550303|ref|XP_003543527.1| PREDICTED: transcription initiation factor IIA large subunit-like
isoform 1 [Glycine max]
Length = 391
Score = 310 bits (794), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 170/254 (66%), Positives = 190/254 (74%), Gaps = 29/254 (11%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVI---IDRT 56
MA S T VYI VIEDV+ KVRDEFVNNG PGE VL ELQ +WE KM+QAG + I+R+
Sbjct: 1 MAASTTSQVYIDVIEDVMVKVRDEFVNNGGPGEEVLKELQAMWESKMMQAGAVLGPIERS 60
Query: 57 SAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGST 116
+A K P PGGPITPVHDLNVPYEGT+EYETPTA++LFPPTPLQTPIQ
Sbjct: 61 TAAK-PTPGGPITPVHDLNVPYEGTDEYETPTADMLFPPTPLQTPIQ------------- 106
Query: 117 PLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNP 176
TPLPGT DNSTYNIPTG SDYP+ +D+GGN + K RP+ YM PSPWMN
Sbjct: 107 -----TPLPGTGDNSTYNIPTGPSDYPSSGNDTGGNADGKG--ARPAPYM-QSPSPWMNQ 158
Query: 177 RPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQD 236
RPPL DVNVAYVEGRDEADRGTS+QP TQDFFTM +GKRKR D +QY+ GGY IPQQD
Sbjct: 159 RPPL--DVNVAYVEGRDEADRGTSNQPPTQDFFTMPSGKRKRNDLTSQYNAGGY-IPQQD 215
Query: 237 GAGDAMSEIFELEV 250
GAGDA FE+EV
Sbjct: 216 GAGDATHGDFEIEV 229
>gi|356550305|ref|XP_003543528.1| PREDICTED: transcription initiation factor IIA large subunit-like
isoform 2 [Glycine max]
Length = 384
Score = 309 bits (792), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 175/276 (63%), Positives = 196/276 (71%), Gaps = 37/276 (13%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVI---IDRT 56
MA S T VYI VIEDV+ KVRDEFVNNG PGE VL ELQ +WE KM+QAG + I+R+
Sbjct: 1 MAASTTSQVYIDVIEDVMVKVRDEFVNNGGPGEEVLKELQAMWESKMMQAGAVLGPIERS 60
Query: 57 SAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGST 116
+A K P PGGPITPVHDLNVPYEGT+EYETPTA++LFPPTPLQTPIQ
Sbjct: 61 TAAK-PTPGGPITPVHDLNVPYEGTDEYETPTADMLFPPTPLQTPIQ------------- 106
Query: 117 PLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNP 176
TPLPGT DNSTYNIPTG SDYP+ +D+GGN + K RP+ YM PSPWMN
Sbjct: 107 -----TPLPGTGDNSTYNIPTGPSDYPSSGNDTGGNADGKG--ARPAPYM-QSPSPWMNQ 158
Query: 177 RPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQD 236
RPPL DVNVAYVEGRDEADRGTS+QP TQDFFTM +GKRKR D +QY+ GGY IPQQD
Sbjct: 159 RPPL--DVNVAYVEGRDEADRGTSNQPPTQDFFTMPSGKRKRNDLTSQYNAGGY-IPQQD 215
Query: 237 GAGDAMSEIFELEVRFLSPLLIYALLYFSKSSHQMD 272
GAGDA FE+E FL + Y SK D
Sbjct: 216 GAGDATHGDFEIE--FLK------IAYISKGKMSAD 243
>gi|225434853|ref|XP_002282322.1| PREDICTED: uncharacterized protein LOC100241598 [Vitis vinifera]
gi|297746029|emb|CBI16085.3| unnamed protein product [Vitis vinifera]
Length = 393
Score = 306 bits (783), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 170/253 (67%), Positives = 187/253 (73%), Gaps = 28/253 (11%)
Query: 3 TSATGMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVI---IDRTSA 58
+S T VY+ VIEDVI+KVRDEFVNNG PGESVL+ELQGIWEMKM+QAGV+ I+R++A
Sbjct: 4 SSMTSTVYVSVIEDVINKVRDEFVNNGGPGESVLSELQGIWEMKMVQAGVVTGPIERSTA 63
Query: 59 PKQPAPG-GPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTP 117
PKQ + P PVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPG
Sbjct: 64 PKQTSGAPAPTPPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPG--------- 114
Query: 118 LPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPR 177
DNS YNIPTG ++YP A D GG T+ KSG P SPWM R
Sbjct: 115 ---------MGDNSMYNIPTGPTEYPA-AQDGGGATDMKSGRPPSYMPPP---SPWMQQR 161
Query: 178 PPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDG 237
PPLSVDVNVAYVEGRDE DRG S QPLTQDFF MS+GKRKREDFP+QYH GY IPQQDG
Sbjct: 162 PPLSVDVNVAYVEGRDEGDRGNSQQPLTQDFFMMSSGKRKREDFPSQYHTSGY-IPQQDG 220
Query: 238 AGDAMSEIFELEV 250
AGD E+FE+EV
Sbjct: 221 AGDPAPEVFEVEV 233
>gi|224054626|ref|XP_002298340.1| predicted protein [Populus trichocarpa]
gi|222845598|gb|EEE83145.1| predicted protein [Populus trichocarpa]
Length = 409
Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 178/285 (62%), Positives = 210/285 (73%), Gaps = 28/285 (9%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVI---IDRT 56
MA+SAT VY VIEDVI KVRDEF+NNG PGE+VL+ELQG+WE K++QAGV+ I R+
Sbjct: 1 MASSATSTVYTEVIEDVIDKVRDEFINNGGPGETVLSELQGLWEKKLMQAGVLSGPIVRS 60
Query: 57 SAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGS--TPLPG 114
SA KQ PGG +TPVHDLNVPYEGTEEYETPTAEILFPPTPL QTPLPG+ TPLPG
Sbjct: 61 SANKQLVPGG-LTPVHDLNVPYEGTEEYETPTAEILFPPTPLPGSAQTPLPGNVQTPLPG 119
Query: 115 STPLPGSTPLPGTADNST-YNIPTG-SSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSP 172
+ P TPLPG+ DNS+ YNI TG SSDYPTP SD+GG+T+ K+ GRPS +M PSP
Sbjct: 120 NVP----TPLPGSVDNSSMYNISTGSSSDYPTPVSDAGGSTDVKA--GRPSHFM-QSPSP 172
Query: 173 WMNPRPPLSVDVN----------VAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFP 222
M+ RPPL V+V VAYVEGRDE DRG SHQ LTQDFF MS+GKRKR DF
Sbjct: 173 LMHQRPPLDVNVGKVLTNKCCAFVAYVEGRDEVDRGGSHQTLTQDFF-MSSGKRKRGDFA 231
Query: 223 AQYHNGGYNIPQQDGAGDAMSEIFELEVRFLSPLLIYALLYFSKS 267
+Y+NGG+ IPQQDGA D+ SE+ ++E ++ L S+S
Sbjct: 232 PKYNNGGF-IPQQDGAVDSASEVSQVECDTITTKNREILARVSRS 275
>gi|356538972|ref|XP_003537974.1| PREDICTED: uncharacterized protein LOC100800601 [Glycine max]
Length = 392
Score = 302 bits (773), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 169/260 (65%), Positives = 192/260 (73%), Gaps = 35/260 (13%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVI---IDRT 56
MA S T VYI+VI+DV++KVRDEFVNNG PG+ VL ELQ IWE KM+QAG I I+R+
Sbjct: 1 MAASTTSQVYIQVIDDVMNKVRDEFVNNGGPGDEVLKELQSIWESKMMQAGAIVGPIERS 60
Query: 57 SAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGST 116
APK P PGGPITPVHDLN+PYEGTEEYETPTAE+LFPPTPLQTP+Q
Sbjct: 61 GAPK-PTPGGPITPVHDLNMPYEGTEEYETPTAEMLFPPTPLQTPLQ------------- 106
Query: 117 PLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWM-- 174
TPLPGT DNS YNIPTG SDYP+ ++ G N E K GRP YM PPPSPW
Sbjct: 107 -----TPLPGTVDNSMYNIPTGPSDYPSAGNEPGANNEIKG--GRPGPYMQPPPSPWTNQ 159
Query: 175 ----NPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGY 230
N R PL DVNVAYVEGRDEA+RG S+QPLTQDFF MS+GKRKR++ +QY+ GGY
Sbjct: 160 NQNQNQRAPL--DVNVAYVEGRDEAERGASNQPLTQDFF-MSSGKRKRDEIASQYNAGGY 216
Query: 231 NIPQQDGAGDAMSEIFELEV 250
IPQQDGAGDA S+I E+EV
Sbjct: 217 -IPQQDGAGDAASQILEIEV 235
>gi|124360553|gb|ABD33143.2| Transcription factor IIA, helical [Medicago truncatula]
Length = 317
Score = 296 bits (758), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 168/258 (65%), Positives = 185/258 (71%), Gaps = 33/258 (12%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNG--PGESVLNELQGIWEMKMIQAGVI---IDR 55
MA S T VYI VIEDV+ KVRDEFVN G PG+ VL ELQ IWE K IQAG + I+R
Sbjct: 1 MAASTTSQVYIDVIEDVMVKVRDEFVNTGASPGDEVLRELQAIWESKCIQAGAVLGPIER 60
Query: 56 TSAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGS 115
+ +P PGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPG PG
Sbjct: 61 NTGVNRPMPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPG----PGE 116
Query: 116 TPLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPW-- 173
TP YNIPTG SDY + +D+GGN + K G ++M PPPSPW
Sbjct: 117 TP--------------NYNIPTGPSDY-SSGNDAGGNADVKGGR---QAFM-PPPSPWMN 157
Query: 174 MNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIP 233
MN RPPL DVNVAYVEGRDEADRG S+QP+TQDFFTM+ GKRKR D P Y GGY IP
Sbjct: 158 MNQRPPL--DVNVAYVEGRDEADRGASNQPMTQDFFTMTGGKRKRNDLPPPYDAGGY-IP 214
Query: 234 QQDGAGDAMSEIFELEVR 251
QQDGAGDA+S FE+E R
Sbjct: 215 QQDGAGDAVSGDFEIESR 232
>gi|357454247|ref|XP_003597404.1| Transcription factor/ transcription initiation factor [Medicago
truncatula]
gi|355486452|gb|AES67655.1| Transcription factor/ transcription initiation factor [Medicago
truncatula]
gi|388523053|gb|AFK49588.1| unknown [Medicago truncatula]
Length = 388
Score = 296 bits (758), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 168/257 (65%), Positives = 185/257 (71%), Gaps = 33/257 (12%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNG--PGESVLNELQGIWEMKMIQAGVI---IDR 55
MA S T VYI VIEDV+ KVRDEFVN G PG+ VL ELQ IWE K IQAG + I+R
Sbjct: 1 MAASTTSQVYIDVIEDVMVKVRDEFVNTGASPGDEVLRELQAIWESKCIQAGAVLGPIER 60
Query: 56 TSAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGS 115
+ +P PGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPG PG
Sbjct: 61 NTGVNRPMPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPG----PGE 116
Query: 116 TPLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPW-- 173
TP YNIPTG SDY + +D+GGN + K G ++M PPPSPW
Sbjct: 117 TP--------------NYNIPTGPSDY-SSGNDAGGNADVKGGR---QAFM-PPPSPWMN 157
Query: 174 MNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIP 233
MN RPPL DVNVAYVEGRDEADRG S+QP+TQDFFTM+ GKRKR D P Y GGY IP
Sbjct: 158 MNQRPPL--DVNVAYVEGRDEADRGASNQPMTQDFFTMTGGKRKRNDLPPPYDAGGY-IP 214
Query: 234 QQDGAGDAMSEIFELEV 250
QQDGAGDA+S FE+EV
Sbjct: 215 QQDGAGDAVSGDFEIEV 231
>gi|356542288|ref|XP_003539601.1| PREDICTED: transcription initiation factor IIA large subunit-like
isoform 2 [Glycine max]
Length = 389
Score = 296 bits (758), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 167/256 (65%), Positives = 190/256 (74%), Gaps = 31/256 (12%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVI---IDRT 56
MA S+T VYI+VI+DV+ KVRDEFVNNG PG+ VL ELQ IWE KM+QAG I I+R+
Sbjct: 1 MAASSTSQVYIQVIDDVMIKVRDEFVNNGGPGDEVLKELQSIWESKMLQAGAIVGPIERS 60
Query: 57 SAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGST 116
APK P PGGPITPVHDLN+PYEGTEEYETPTAE+LFPPTPLQTP+Q
Sbjct: 61 GAPK-PTPGGPITPVHDLNMPYEGTEEYETPTAEMLFPPTPLQTPLQ------------- 106
Query: 117 PLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPP--SPWM 174
TPLPGT DNS YNIPTG SDYP+ ++ G N E K GRP YM PPP S
Sbjct: 107 -----TPLPGTVDNSMYNIPTGPSDYPSAGNEPGENNEIKG--GRPGPYMQPPPWTSQNQ 159
Query: 175 NPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQ 234
N R PL DVNVAYVEGRD A+RG S+QPLTQDFF MS+GKRKR++ +QY+ GGY IPQ
Sbjct: 160 NQRAPL--DVNVAYVEGRDAAERGASNQPLTQDFF-MSSGKRKRDEIASQYNAGGY-IPQ 215
Query: 235 QDGAGDAMSEIFELEV 250
QDGAGDA S+IFE+EV
Sbjct: 216 QDGAGDADSQIFEIEV 231
>gi|356542286|ref|XP_003539600.1| PREDICTED: transcription initiation factor IIA large subunit-like
isoform 1 [Glycine max]
Length = 382
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 169/261 (64%), Positives = 192/261 (73%), Gaps = 32/261 (12%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVI---IDRT 56
MA S+T VYI+VI+DV+ KVRDEFVNNG PG+ VL ELQ IWE KM+QAG I I+R+
Sbjct: 1 MAASSTSQVYIQVIDDVMIKVRDEFVNNGGPGDEVLKELQSIWESKMLQAGAIVGPIERS 60
Query: 57 SAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGST 116
APK P PGGPITPVHDLN+PYEGTEEYETPTAE+LFPPTPLQTP+Q
Sbjct: 61 GAPK-PTPGGPITPVHDLNMPYEGTEEYETPTAEMLFPPTPLQTPLQ------------- 106
Query: 117 PLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPP--SPWM 174
TPLPGT DNS YNIPTG SDYP+ ++ G N E K GRP YM PPP S
Sbjct: 107 -----TPLPGTVDNSMYNIPTGPSDYPSAGNEPGENNEIKG--GRPGPYMQPPPWTSQNQ 159
Query: 175 NPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQ 234
N R PL DVNVAYVEGRD A+RG S+QPLTQDFF MS+GKRKR++ +QY+ GGY IPQ
Sbjct: 160 NQRAPL--DVNVAYVEGRDAAERGASNQPLTQDFF-MSSGKRKRDEIASQYNAGGY-IPQ 215
Query: 235 QDGAGDAMSEIFELEV-RFLS 254
QDGAGDA S+IFE+EV F S
Sbjct: 216 QDGAGDADSQIFEIEVWHFFS 236
>gi|224104389|ref|XP_002313420.1| predicted protein [Populus trichocarpa]
gi|222849828|gb|EEE87375.1| predicted protein [Populus trichocarpa]
Length = 401
Score = 287 bits (735), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 171/285 (60%), Positives = 202/285 (70%), Gaps = 37/285 (12%)
Query: 1 MATS-ATGMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVI---IDR 55
MA+S AT VYI VIEDVI+KVRDEF+NNG PGE+VL ELQG+WE KM+QAG I IDR
Sbjct: 1 MASSDATSPVYINVIEDVINKVRDEFINNGGPGETVLYELQGLWETKMMQAGAICGTIDR 60
Query: 56 TSAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTP--LQTPIQTPLPGSTPLP 113
+SA K P PGGPITPVHDLNVPYEGTEEYETPTAEILFPP QTPLPG+
Sbjct: 61 SSANKLPVPGGPITPVHDLNVPYEGTEEYETPTAEILFPPCANTFTWNAQTPLPGN---- 116
Query: 114 GSTPLPGSTPLPGTADNST-YNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSP 172
TPLPG+ DNS+ YNIPTGSSDYPTP SD+GG+T+ K+ GRPS +M S
Sbjct: 117 ------AQTPLPGSVDNSSMYNIPTGSSDYPTPVSDAGGSTDGKA--GRPSPFM---VST 165
Query: 173 WMNPRPPLSVDVN----VAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNG 228
+ +P L + VAYVEGRDE DRGTSHQ LTQDFF M +GKRKREDF +Y+NG
Sbjct: 166 DLIFQPSLVLTNKCCAFVAYVEGRDEVDRGTSHQALTQDFF-MPSGKRKREDFAPKYNNG 224
Query: 229 GYNIPQQDGAGDAMSEIFELEVRFLSPLLIYALLYFSKSSHQMDA 273
G+ IPQQDGAGD+ SE+ ++E+ S YF+ + ++ A
Sbjct: 225 GF-IPQQDGAGDSASEVSQVELNVNS--------YFTTKNKEILA 260
>gi|449450764|ref|XP_004143132.1| PREDICTED: transcription initiation factor IIA large subunit-like
[Cucumis sativus]
gi|449496658|ref|XP_004160191.1| PREDICTED: transcription initiation factor IIA large subunit-like
[Cucumis sativus]
Length = 402
Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 157/265 (59%), Positives = 188/265 (70%), Gaps = 40/265 (15%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI---IDRTS 57
MATS T +YI VIEDVI+K+RDEFV+NGPGE VL ELQG+WE KM+QAG + I+R S
Sbjct: 1 MATS-TSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIER-S 58
Query: 58 APKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTP 117
AP +P PGGPITPVHDLNVPYEGTEEYETPTA++LFPPTPLQTPIQ
Sbjct: 59 APSKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQ-------------- 104
Query: 118 LPGSTPLPGTADNSTYNIPTGSSDYPTPASDS---------GGNTEAKSGNGRPSSYMPP 168
TPLPGTADN+ YN+PTG SD+ +D+ GN + +GRP+ YM P
Sbjct: 105 ----TPLPGTADNAMYNVPTGPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMQP 160
Query: 169 PPSPWMNPRPPLSVDVNVAYVEGRDE-ADRGT--SHQPLTQDFFTMSAGKRKREDFPAQY 225
P WM R P VDVN+AYVEGR+E ADRG +H LTQDFF M++GKRKR+DF +QY
Sbjct: 161 P--SWMGQRTP--VDVNIAYVEGREEAADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQY 216
Query: 226 HNGGYNIPQQDGAGDAMSEIFELEV 250
G+ IPQQDGAGDA + +FE+E+
Sbjct: 217 QANGF-IPQQDGAGDAANSVFEIEI 240
>gi|147856331|emb|CAN83895.1| hypothetical protein VITISV_039114 [Vitis vinifera]
Length = 630
Score = 264 bits (674), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 155/255 (60%), Positives = 174/255 (68%), Gaps = 34/255 (13%)
Query: 3 TSATGMVYIRVIEDVISKVRD----EFVNNGPGESVLNELQGIWEMKMIQAGVI---IDR 55
+S T VY+ VIEDVI+K R +++ G V + IWEMKM+QAGV+ I+R
Sbjct: 4 SSMTSTVYVSVIEDVINKERFCLAFDWIVWEIGSIVFDL---IWEMKMVQAGVVTGPIER 60
Query: 56 TSAPKQPAPG-GPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPG 114
+ APKQ + P PVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPG
Sbjct: 61 SXAPKQTSGAPAPTPPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPG------ 114
Query: 115 STPLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWM 174
DNS YNIPTG ++YP A D GG T+ KSG PPPSPWM
Sbjct: 115 ------------MGDNSMYNIPTGPTEYPA-AQDGGGATDMKSGR---PPSYMPPPSPWM 158
Query: 175 NPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQ 234
RPPLSVDVNVAYVEGRDE DRG S QPLTQDFF MS+GKRKREDFP+QYH GY IPQ
Sbjct: 159 QQRPPLSVDVNVAYVEGRDEGDRGNSQQPLTQDFFMMSSGKRKREDFPSQYHTSGY-IPQ 217
Query: 235 QDGAGDAMSEIFELE 249
QDGAGD E+FE+E
Sbjct: 218 QDGAGDPAPEVFEVE 232
>gi|312282103|dbj|BAJ33917.1| unnamed protein product [Thellungiella halophila]
Length = 375
Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 158/245 (64%), Positives = 180/245 (73%), Gaps = 35/245 (14%)
Query: 3 TSATGMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVI---IDRTSA 58
T+ T VYI VIEDV++KVR+EF+NNG PGESVLNELQGIWEMKM+QAGV+ I+R+SA
Sbjct: 4 TTTTSAVYIHVIEDVVNKVREEFINNGGPGESVLNELQGIWEMKMMQAGVLSGPIERSSA 63
Query: 59 PKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPL 118
K P PGGP+T HDLNVPYEGTEEYETPTAE+LFPPT
Sbjct: 64 QK-PTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPT------------------PLQT 102
Query: 119 PGSTPLPGTADNST-YNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPR 177
P TPLPGTADNS+ YNIPTGSSDYPTP +++G N +AK GRPS YM PPSPW NPR
Sbjct: 103 PLPTPLPGTADNSSMYNIPTGSSDYPTPGTENGSNPDAK---GRPSPYM-QPPSPWTNPR 158
Query: 178 PPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDG 237
+DVNVAYV+GRDE +RG S+Q TQD F S GKRKR+D AQY NGG +IPQQDG
Sbjct: 159 ----LDVNVAYVDGRDEPERGNSNQQFTQDLFVPSNGKRKRDDSSAQYQNGG-SIPQQDG 213
Query: 238 AGDAM 242
A DAM
Sbjct: 214 ASDAM 218
>gi|8778565|gb|AAF79573.1|AC022464_31 F22G5.18 [Arabidopsis thaliana]
Length = 475
Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 154/267 (57%), Positives = 180/267 (67%), Gaps = 54/267 (20%)
Query: 3 TSATGMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVI---IDRTSA 58
T+ T VYI VIEDV++KVR+EF+NNG PGESVL+ELQGIWE KM+QAGV+ I+R+SA
Sbjct: 4 TTTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSA 63
Query: 59 PKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPL 118
K P PGGP+T HDLNVPYEGTEEYETPTAE+LFPPT
Sbjct: 64 QK-PTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPT------------------PLQT 102
Query: 119 PGSTPLPGTADNST-YNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYM----------- 166
P TPLPGTADNS+ YNIPTGSSDYPTP +++G N + K+ RPS YM
Sbjct: 103 PLPTPLPGTADNSSMYNIPTGSSDYPTPGTENGVNIDVKA---RPSPYMLCSETAYLGGL 159
Query: 167 ---------PPPPSPWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRK 217
PPPSPW NPR +DVNVAYV+GRDE +RG S+Q TQD F S+GKRK
Sbjct: 160 QKLRLSTLLQPPPSPWTNPR----LDVNVAYVDGRDEPERGNSNQQFTQDLFVPSSGKRK 215
Query: 218 REDFPAQYHNGGYNIPQQDGAGDAMSE 244
R+D A Y NGG +IPQQDGA DA+ E
Sbjct: 216 RDDSSAHYQNGG-SIPQQDGASDAIPE 241
>gi|413948830|gb|AFW81479.1| hypothetical protein ZEAMMB73_123227 [Zea mays]
Length = 437
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 138/249 (55%), Positives = 163/249 (65%), Gaps = 33/249 (13%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI---IDRTSAPKQPAPG 65
VYI VI+DVISKVR++F+ G G++VLNELQ +WEMKM+ G I IDRT A G
Sbjct: 53 VYISVIDDVISKVREDFITYGVGDAVLNELQALWEMKMLHCGAISGNIDRTKAAAASVGG 112
Query: 66 --GPITPVHDLNVPYEGT-EEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGST 122
G PVHDLNVPYE T EEY TPTA++LFPPTPLQTPIQTPLPG+
Sbjct: 113 TTGTTPPVHDLNVPYEATSEEYATPTADMLFPPTPLQTPIQTPLPGT------------- 159
Query: 123 PLPGTADNSTYNIPTGSSDY-PTPASDSGGNTEAKSGN---GRPSSYM--PPPPSPWMNP 176
D + YNIPTG SDY P+P SD + G PS YM PPPSPWMN
Sbjct: 160 ------DTAMYNIPTGPSDYAPSPISDVRNGMAINGADPTAGHPSPYMFLQPPPSPWMNQ 213
Query: 177 RPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQD 236
RP L VDVNVAYVEGR++ DRG QPLTQDF MS+GKRKR+++P Q +G + +PQQD
Sbjct: 214 RP-LGVDVNVAYVEGREDPDRGVQPQPLTQDFLMMSSGKRKRDEYPGQLPSGSF-VPQQD 271
Query: 237 GAGDAMSEI 245
G+ D + E
Sbjct: 272 GSADQIVEF 280
>gi|8778543|gb|AAF79551.1|AC022464_9 F22G5.14 [Arabidopsis thaliana]
Length = 488
Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 150/247 (60%), Positives = 176/247 (71%), Gaps = 35/247 (14%)
Query: 3 TSATGMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVI---IDRTSA 58
T+ T VYI VIEDV++KVR+EF+NNG PGESVL+ELQGIWE KM+QAGV+ I+R+SA
Sbjct: 4 TTTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSA 63
Query: 59 PKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPL 118
K P PGGP+T HDLNVPYEGTEEYETPTAE+LFPPT
Sbjct: 64 QK-PTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPT------------------PLQT 102
Query: 119 PGSTPLPGTADNST-YNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPR 177
P TPLPGTADNS+ YNIPTGSSDYPTP +++G N + K+ S PPPSPW NPR
Sbjct: 103 PLPTPLPGTADNSSMYNIPTGSSDYPTPGTENGVNIDVKA----RPSPYMPPPSPWTNPR 158
Query: 178 PPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDG 237
+DVNVAYV+GRDE +RG S+Q TQD F S+GKRKR+D Y NGG +IPQQDG
Sbjct: 159 ----LDVNVAYVDGRDEPERGNSNQQFTQDLFVPSSGKRKRDDSSGHYQNGG-SIPQQDG 213
Query: 238 AGDAMSE 244
AGDA+ E
Sbjct: 214 AGDAIPE 220
>gi|30680148|ref|NP_850937.1| Transcription factor IIA, alpha/beta subunit [Arabidopsis thaliana]
gi|30680153|ref|NP_172228.3| Transcription factor IIA, alpha/beta subunit [Arabidopsis thaliana]
gi|2826884|emb|CAA11525.1| transcription factor IIA large subunit [Arabidopsis thaliana]
gi|39545932|gb|AAR28029.1| TFIIA-L1 [Arabidopsis thaliana]
gi|222423282|dbj|BAH19617.1| AT1G07480 [Arabidopsis thaliana]
gi|225897890|dbj|BAH30277.1| hypothetical protein [Arabidopsis thaliana]
gi|332190011|gb|AEE28132.1| Transcription factor IIA, alpha/beta subunit [Arabidopsis thaliana]
gi|332190012|gb|AEE28133.1| Transcription factor IIA, alpha/beta subunit [Arabidopsis thaliana]
Length = 375
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 152/260 (58%), Positives = 182/260 (70%), Gaps = 36/260 (13%)
Query: 3 TSATGMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVI---IDRTSA 58
T+ T VYI VIEDV++KVR+EF+NNG PGESVL+ELQGIWE KM+QAGV+ I+R+SA
Sbjct: 4 TTTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSA 63
Query: 59 PKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPL 118
K P PGGP+T HDLNVPYEGTEEYETPTAE+LFPPT
Sbjct: 64 QK-PTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPT------------------PLQT 102
Query: 119 PGSTPLPGTADNST-YNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPR 177
P TPLPGTADNS+ YNIPTGSSDYPTP +++G N + K+ S PPPSPW NPR
Sbjct: 103 PLPTPLPGTADNSSMYNIPTGSSDYPTPGTENGVNIDVKA----RPSPYMPPPSPWTNPR 158
Query: 178 PPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDG 237
+DVNVAYV+GRDE +RG S+Q TQD F S+GKRKR+D Y NGG +IPQQDG
Sbjct: 159 ----LDVNVAYVDGRDEPERGNSNQQFTQDLFVPSSGKRKRDDSSGHYQNGG-SIPQQDG 213
Query: 238 AGDAMSEI-FELEVRFLSPL 256
AGDA+ E FE + ++ +
Sbjct: 214 AGDAIPEANFECDAFRITSI 233
>gi|18390773|ref|NP_563790.1| transcription initiation factor TFIIA large subunit [Arabidopsis
thaliana]
gi|15983370|gb|AAL11553.1|AF424559_1 At1g07470/F22G5_13 [Arabidopsis thaliana]
gi|14532726|gb|AAK64164.1| putative transcription factor IIA large subunit [Arabidopsis
thaliana]
gi|15146226|gb|AAK83596.1| At1g07470/F22G5_13 [Arabidopsis thaliana]
gi|21554033|gb|AAM63114.1| transcription factor IIA large subunit [Arabidopsis thaliana]
gi|22136784|gb|AAM91736.1| putative transcription factor IIA large subunit [Arabidopsis
thaliana]
gi|39545872|gb|AAR27999.1| TFIIA-L2 [Arabidopsis thaliana]
gi|332190008|gb|AEE28129.1| transcription initiation factor TFIIA large subunit [Arabidopsis
thaliana]
Length = 375
Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 150/247 (60%), Positives = 176/247 (71%), Gaps = 35/247 (14%)
Query: 3 TSATGMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVI---IDRTSA 58
T+ T VYI VIEDV++KVR+EF+NNG PGESVL+ELQGIWE KM+QAGV+ I+R+SA
Sbjct: 4 TTTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSA 63
Query: 59 PKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPL 118
K P PGGP+T HDLNVPYEGTEEYETPTAE+LFPPT
Sbjct: 64 QK-PTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPT------------------PLQT 102
Query: 119 PGSTPLPGTADNST-YNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPR 177
P TPLPGTADNS+ YNIPTGSSDYPTP +++G N + K+ S PPPSPW NPR
Sbjct: 103 PLPTPLPGTADNSSMYNIPTGSSDYPTPGTENGVNIDVKA----RPSPYMPPPSPWTNPR 158
Query: 178 PPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDG 237
+DVNVAYV+GRDE +RG S+Q TQD F S+GKRKR+D A Y NGG +IPQQDG
Sbjct: 159 ----LDVNVAYVDGRDEPERGNSNQQFTQDLFVPSSGKRKRDDSSAHYQNGG-SIPQQDG 213
Query: 238 AGDAMSE 244
A DA+ E
Sbjct: 214 ASDAIPE 220
>gi|226495785|ref|NP_001148644.1| transcription factor/ transcription initiation factor [Zea mays]
gi|195621078|gb|ACG32369.1| transcription factor/ transcription initiation factor [Zea mays]
Length = 390
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 139/254 (54%), Positives = 165/254 (64%), Gaps = 30/254 (11%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI---IDRTS 57
MA+S VYI VI+DVISKVR++F+ G G++VLNELQ +WEMKM+ G I IDRT
Sbjct: 1 MASSNVSTVYISVIDDVISKVREDFITYGVGDAVLNELQALWEMKMLHCGAISGNIDRTK 60
Query: 58 APKQPAPG--GPITPVHDLNVPYEGT-EEYETPTAEILFPPTPLQTPIQTPLPGSTPLPG 114
A G G PVHDLNVPYE T EEY TPTA++LFPPTPLQTPIQTPLPG+
Sbjct: 61 AAAASVGGTTGTTAPVHDLNVPYEATSEEYATPTADMLFPPTPLQTPIQTPLPGT----- 115
Query: 115 STPLPGSTPLPGTADNSTYNIPTGSSDY-PTPASD--SGGNTEAKSGNGRPSSYMPPPPS 171
D + YNIPTG SDY P+P SD +G S PPPS
Sbjct: 116 --------------DTAMYNIPTGPSDYAPSPISDVRNGMAINGADPTAGHPSPYMPPPS 161
Query: 172 PWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYN 231
PWMN RP L VDVNVAYVEGR++ DRG QPLTQDFF MS+GKRKR+++P Q +G +
Sbjct: 162 PWMNQRP-LGVDVNVAYVEGREDPDRGVQPQPLTQDFFMMSSGKRKRDEYPGQLPSGSF- 219
Query: 232 IPQQDGAGDAMSEI 245
+PQQDG+ D + E
Sbjct: 220 VPQQDGSADQIVEF 233
>gi|223973831|gb|ACN31103.1| unknown [Zea mays]
Length = 390
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 138/254 (54%), Positives = 164/254 (64%), Gaps = 30/254 (11%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI---IDRTS 57
MA+S VYI VI+DVISKVR++F+ G G++VLNELQ +WEMKM+ G I IDRT
Sbjct: 1 MASSNVSTVYISVIDDVISKVREDFITYGVGDAVLNELQALWEMKMLHCGAISGNIDRTK 60
Query: 58 APKQPAPG--GPITPVHDLNVPYEGT-EEYETPTAEILFPPTPLQTPIQTPLPGSTPLPG 114
A G G PVHDLNVPYE T EEY TPTA++LFPPTPLQTPIQTPLPG+
Sbjct: 61 AAAASVGGTTGTTPPVHDLNVPYEATSEEYATPTADMLFPPTPLQTPIQTPLPGT----- 115
Query: 115 STPLPGSTPLPGTADNSTYNIPTGSSDY-PTPASD--SGGNTEAKSGNGRPSSYMPPPPS 171
D + YNIPTG SDY P+P SD +G S PPPS
Sbjct: 116 --------------DTAMYNIPTGPSDYAPSPISDVRNGMAINGADPTAGHPSPYMPPPS 161
Query: 172 PWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYN 231
PWMN RP L VDVNVAYVEGR++ DRG QPLTQDF MS+GKRKR+++P Q +G +
Sbjct: 162 PWMNQRP-LGVDVNVAYVEGREDPDRGVQPQPLTQDFLMMSSGKRKRDEYPGQLPSGSF- 219
Query: 232 IPQQDGAGDAMSEI 245
+PQQDG+ D + E
Sbjct: 220 VPQQDGSADQIVEF 233
>gi|297849042|ref|XP_002892402.1| transcription factor IIA large subunit [Arabidopsis lyrata subsp.
lyrata]
gi|297338244|gb|EFH68661.1| transcription factor IIA large subunit [Arabidopsis lyrata subsp.
lyrata]
Length = 375
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 149/245 (60%), Positives = 174/245 (71%), Gaps = 35/245 (14%)
Query: 3 TSATGMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVI---IDRTSA 58
T+ T VYI VIEDV++KVR+EF+NNG PGESVL+ELQGIWE KM+QAGV+ I+R+SA
Sbjct: 4 TTTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSA 63
Query: 59 PKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPL 118
K P PGGP+T HDLNVPYEGTEEYETPTAE+LFPPT
Sbjct: 64 QK-PTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPT------------------PLQT 102
Query: 119 PGSTPLPGTADNST-YNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPR 177
P TPLPGTADNS+ YNIPTGSSDY TP +++G N + K GRPS PPPSPW NPR
Sbjct: 103 PLPTPLPGTADNSSMYNIPTGSSDYTTPGTENGVNLDVK---GRPSP-YMPPPSPWANPR 158
Query: 178 PPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDG 237
+DVNVAYV+GRDE +RG S+Q TQD F S+GKRKR+D Y NGG +IPQQDG
Sbjct: 159 ----LDVNVAYVDGRDEPERGNSNQQFTQDLFVPSSGKRKRDDSSGHYQNGG-SIPQQDG 213
Query: 238 AGDAM 242
A D +
Sbjct: 214 ASDTI 218
>gi|297843536|ref|XP_002889649.1| hypothetical protein ARALYDRAFT_470771 [Arabidopsis lyrata subsp.
lyrata]
gi|297335491|gb|EFH65908.1| hypothetical protein ARALYDRAFT_470771 [Arabidopsis lyrata subsp.
lyrata]
Length = 373
Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 149/245 (60%), Positives = 175/245 (71%), Gaps = 37/245 (15%)
Query: 3 TSATGMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVI---IDRTSA 58
T+ T VYI VIEDV++KVR+EF+NNG PGESVL+ELQGIWE KM+QAGV+ I+R+SA
Sbjct: 4 TTTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSA 63
Query: 59 PKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPL 118
K P PGGP+T HDLNVPYEGTEEYETPTAE+LFPPT
Sbjct: 64 QK-PTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPT------------------PLQT 102
Query: 119 PGSTPLPGTADNST-YNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPR 177
P TPLPGTADNS+ YNIPTGSSDYPTP +++G N + K GR S PPPSPW NPR
Sbjct: 103 PLPTPLPGTADNSSIYNIPTGSSDYPTPGNENGVNLDVK---GRSSP-YMPPPSPWANPR 158
Query: 178 PPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDG 237
+DVNVAYV+GRDE +RG S+Q TQD +S+GKRKR+D A Y NGG +I QQDG
Sbjct: 159 ----LDVNVAYVDGRDEPERGNSNQQFTQDL--LSSGKRKRDDSAAHYQNGG-SILQQDG 211
Query: 238 AGDAM 242
A DA+
Sbjct: 212 ASDAI 216
>gi|413944876|gb|AFW77525.1| hypothetical protein ZEAMMB73_875019 [Zea mays]
Length = 322
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 139/255 (54%), Positives = 165/255 (64%), Gaps = 30/255 (11%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI---IDRTS 57
MA+S VYI VI+DVISKVR++F+ G G++VLNELQ +WEMKM+ G I I+RT
Sbjct: 46 MASSNVSTVYISVIDDVISKVREDFITYGVGDAVLNELQALWEMKMLHCGAISGNIERTK 105
Query: 58 APKQPAPGGPIT--PVHDLNVPYEGT-EEYETPTAEILFPPTPLQTPIQTPLPGSTPLPG 114
A A G T PVHDLNVPYE T EEY TPTA++LFPPTPLQTPIQTPLPG+
Sbjct: 106 AAAASAGGTSGTTPPVHDLNVPYEATSEEYATPTADMLFPPTPLQTPIQTPLPGT----- 160
Query: 115 STPLPGSTPLPGTADNSTYNIPTGSSDY-PTPASD--SGGNTEAKSGNGRPSSYMPPPPS 171
D YNIPTG SDY P+P SD +G S PPPS
Sbjct: 161 --------------DTGMYNIPTGPSDYAPSPISDIRNGMTINGADPKAGRPSPYMPPPS 206
Query: 172 PWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYN 231
PWMN RP L VDVNVAYVEGR++ DRG QPLTQDF TMS+GKRKR+++P Q +G +
Sbjct: 207 PWMNQRP-LGVDVNVAYVEGREDPDRGVQPQPLTQDFLTMSSGKRKRDEYPGQLPSGSF- 264
Query: 232 IPQQDGAGDAMSEIF 246
+PQQDG+ D + E
Sbjct: 265 VPQQDGSADQIVEFV 279
>gi|413948829|gb|AFW81478.1| transcription factor/ transcription initiation factor [Zea mays]
Length = 434
Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 135/246 (54%), Positives = 160/246 (65%), Gaps = 30/246 (12%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI---IDRTSAPKQPAPG 65
VYI VI+DVISKVR++F+ G G++VLNELQ +WEMKM+ G I IDRT A G
Sbjct: 53 VYISVIDDVISKVREDFITYGVGDAVLNELQALWEMKMLHCGAISGNIDRTKAAAASVGG 112
Query: 66 --GPITPVHDLNVPYEGT-EEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGST 122
G PVHDLNVPYE T EEY TPTA++LFPPTPLQTPIQTPLPG+
Sbjct: 113 TTGTTPPVHDLNVPYEATSEEYATPTADMLFPPTPLQTPIQTPLPGT------------- 159
Query: 123 PLPGTADNSTYNIPTGSSDY-PTPASD--SGGNTEAKSGNGRPSSYMPPPPSPWMNPRPP 179
D + YNIPTG SDY P+P SD +G S PPPSPWMN RP
Sbjct: 160 ------DTAMYNIPTGPSDYAPSPISDVRNGMAINGADPTAGHPSPYMPPPSPWMNQRP- 212
Query: 180 LSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDGAG 239
L VDVNVAYVEGR++ DRG QPLTQDF MS+GKRKR+++P Q +G + +PQQDG+
Sbjct: 213 LGVDVNVAYVEGREDPDRGVQPQPLTQDFLMMSSGKRKRDEYPGQLPSGSF-VPQQDGSA 271
Query: 240 DAMSEI 245
D + E
Sbjct: 272 DQIVEF 277
>gi|413944877|gb|AFW77526.1| transcription factor/ transcription initiation factor [Zea mays]
Length = 438
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 139/254 (54%), Positives = 165/254 (64%), Gaps = 30/254 (11%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI---IDRTS 57
MA+S VYI VI+DVISKVR++F+ G G++VLNELQ +WEMKM+ G I I+RT
Sbjct: 46 MASSNVSTVYISVIDDVISKVREDFITYGVGDAVLNELQALWEMKMLHCGAISGNIERTK 105
Query: 58 APKQPAPGGPIT--PVHDLNVPYEGT-EEYETPTAEILFPPTPLQTPIQTPLPGSTPLPG 114
A A G T PVHDLNVPYE T EEY TPTA++LFPPTPLQTPIQTPLPG+
Sbjct: 106 AAAASAGGTSGTTPPVHDLNVPYEATSEEYATPTADMLFPPTPLQTPIQTPLPGT----- 160
Query: 115 STPLPGSTPLPGTADNSTYNIPTGSSDY-PTPASD--SGGNTEAKSGNGRPSSYMPPPPS 171
D YNIPTG SDY P+P SD +G S PPPS
Sbjct: 161 --------------DTGMYNIPTGPSDYAPSPISDIRNGMTINGADPKAGRPSPYMPPPS 206
Query: 172 PWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYN 231
PWMN RP L VDVNVAYVEGR++ DRG QPLTQDF TMS+GKRKR+++P Q +G +
Sbjct: 207 PWMNQRP-LGVDVNVAYVEGREDPDRGVQPQPLTQDFLTMSSGKRKRDEYPGQLPSGSF- 264
Query: 232 IPQQDGAGDAMSEI 245
+PQQDG+ D + E
Sbjct: 265 VPQQDGSADQIVEF 278
>gi|226504288|ref|NP_001148522.1| LOC100282138 [Zea mays]
gi|195619992|gb|ACG31826.1| transcription factor/ transcription initiation factor [Zea mays]
Length = 393
Score = 219 bits (559), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 139/254 (54%), Positives = 165/254 (64%), Gaps = 30/254 (11%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI---IDRTS 57
MA+S VYI VI+DVISKVR++F+ G G++VLNELQ +WEMKM+ G I I+RT
Sbjct: 1 MASSNVSTVYISVIDDVISKVREDFITYGVGDAVLNELQALWEMKMLHCGAISGNIERTK 60
Query: 58 APKQPAPGGPIT--PVHDLNVPYEGT-EEYETPTAEILFPPTPLQTPIQTPLPGSTPLPG 114
A A G T PVHDLNVPYE T EEY TPTA++LFPPTPLQTPIQTPLPG+
Sbjct: 61 AAAASAGGTSGTTPPVHDLNVPYEATSEEYATPTADMLFPPTPLQTPIQTPLPGT----- 115
Query: 115 STPLPGSTPLPGTADNSTYNIPTGSSDY-PTPASD--SGGNTEAKSGNGRPSSYMPPPPS 171
D YNIPTG SDY P+P SD +G S PPPS
Sbjct: 116 --------------DTGMYNIPTGPSDYAPSPISDIRNGMTINGADPKAGRPSPYMPPPS 161
Query: 172 PWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYN 231
PWMN RP L VDVNVAYVEGR++ DRG QPLTQDF TMS+GKRKR+++P Q +G +
Sbjct: 162 PWMNQRP-LGVDVNVAYVEGREDPDRGVQPQPLTQDFLTMSSGKRKRDEYPGQLPSGSF- 219
Query: 232 IPQQDGAGDAMSEI 245
+PQQDG+ D + E
Sbjct: 220 VPQQDGSADQIVEF 233
>gi|158828198|gb|ABW81076.1| TF1 [Cleome spinosa]
Length = 385
Score = 219 bits (558), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 150/267 (56%), Positives = 174/267 (65%), Gaps = 58/267 (21%)
Query: 2 ATSATGMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQG-------------------I 41
A++ T +YI VIEDVI+KVRDEF+NNG PGESVLN+LQG I
Sbjct: 3 ASTTTSALYIHVIEDVINKVRDEFINNGGPGESVLNDLQGMFVSGFWFVSSTWMLVCPAI 62
Query: 42 WEMKMIQAGVI---IDRTSAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPL 98
WEMKM+ AGVI I+R+SAPK P PGGP+T HDLNVPYEG EEYETPTAE+LFPPTPL
Sbjct: 63 WEMKMMHAGVICGPIERSSAPK-PIPGGPLT--HDLNVPYEGAEEYETPTAEMLFPPTPL 119
Query: 99 QTPIQTPLPGSTPLPGSTPLPGSTPLPGTADNST-YNIPTGSSDYPTPASDSGGNTEAKS 157
TPLPGTADNS+ YNIPTGSS YPTPAS++G + K
Sbjct: 120 ----------------------PTPLPGTADNSSMYNIPTGSSGYPTPASENGNVPDLKG 157
Query: 158 GNGRPSSYMPPPPSPWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRK 217
P NPR +DVNVAYV G++ A+RG S+Q LTQDFF S+ KRK
Sbjct: 158 SPSPYMPSSSPW----SNPR----LDVNVAYVNGQNVAERGNSNQQLTQDFFVPSSVKRK 209
Query: 218 REDFPAQYHNGGYNIPQQDGAGDAMSE 244
REDFPAQY NGG +IPQQDGA DA+S+
Sbjct: 210 REDFPAQYPNGG-SIPQQDGANDAVSK 235
>gi|357134151|ref|XP_003568681.1| PREDICTED: uncharacterized protein LOC100827776 [Brachypodium
distachyon]
Length = 400
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 137/261 (52%), Positives = 166/261 (63%), Gaps = 39/261 (14%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI---IDRTS 57
MA+ VYI VI+DVI+KVR+EF++ G G++VLNELQ +WEMKM+Q G I IDR
Sbjct: 1 MASGNVSTVYISVIDDVIAKVREEFISYGVGDAVLNELQALWEMKMLQCGAISGNIDRAR 60
Query: 58 APKQPAPGGPIT-------PVHDLNVPYEGT-EEYETPTAEILFPPTPLQTPIQTPLPGS 109
AP P GG PVHDLNVPYE T EEY TPTA++LFPPTPLQTPIQTPLPG+
Sbjct: 61 APAAPGAGGGGAPGAGSTPPVHDLNVPYEATSEEYATPTADMLFPPTPLQTPIQTPLPGT 120
Query: 110 TPLPGSTPLPGSTPLPGTADNSTYNIPTGSSDY-PTPASDSGGNTEAKSGN----GRPSS 164
+ YNIPTG SDY P+P SD N A +G+ GRPS
Sbjct: 121 -------------------EAGMYNIPTGPSDYAPSPISDM-RNGMAMNGSDPKTGRPSP 160
Query: 165 YMPPPPSPWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQ 224
YM PPSPWMN R PL VDVNVAY E R++ DR +T+DF MS+GKRKR+++P Q
Sbjct: 161 YM-QPPSPWMNQR-PLGVDVNVAYEETREDPDRAVQPPQMTKDFLMMSSGKRKRDEYPGQ 218
Query: 225 YHNGGYNIPQQDGAGDAMSEI 245
+G + +PQQDG D + E
Sbjct: 219 LPSGSF-MPQQDGNSDEIVEF 238
>gi|115463003|ref|NP_001055101.1| Os05g0292200 [Oryza sativa Japonica Group]
gi|113578652|dbj|BAF17015.1| Os05g0292200 [Oryza sativa Japonica Group]
gi|125551677|gb|EAY97386.1| hypothetical protein OsI_19309 [Oryza sativa Indica Group]
gi|215694500|dbj|BAG89493.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 394
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 137/258 (53%), Positives = 165/258 (63%), Gaps = 36/258 (13%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI---IDRTS 57
MA+S VYI VI+DVISKVRD+F++ G G++VLNELQ +WEMKM+ G I IDR+
Sbjct: 1 MASSNVSTVYISVIDDVISKVRDDFISYGVGDAVLNELQALWEMKMLHCGAISGTIDRSK 60
Query: 58 APKQPAPG----GPITPVHDLNVPYEGT-EEYETPTAEILFPPTPLQTPIQTPLPGSTPL 112
A P+ G G PVHDLNVPYE T EEY TPTA++LFPPTPLQTPIQTPLPG+
Sbjct: 61 AAPAPSAGTPGAGTTPPVHDLNVPYEATSEEYATPTADMLFPPTPLQTPIQTPLPGT--- 117
Query: 113 PGSTPLPGSTPLPGTADNSTYNIPTGSSDY-PTPASDSGGNTEAKSG----NGRPSSYMP 167
D YNIPTG SDY P+P SD N A +G GR S
Sbjct: 118 ----------------DAGMYNIPTGPSDYAPSPISDV-RNGMAMNGADPKTGR-PSPYM 159
Query: 168 PPPSPWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHN 227
PPPSPWM R PL VDVNVAYVE R++ DR LT+DF MS+GKRKR+++P Q +
Sbjct: 160 PPPSPWMTQR-PLGVDVNVAYVENREDPDRTGQPPQLTKDFLMMSSGKRKRDEYPGQLPS 218
Query: 228 GGYNIPQQDGAGDAMSEI 245
G + +PQQDG+ D + E
Sbjct: 219 GSF-VPQQDGSADQIVEF 235
>gi|242062660|ref|XP_002452619.1| hypothetical protein SORBIDRAFT_04g029230 [Sorghum bicolor]
gi|241932450|gb|EES05595.1| hypothetical protein SORBIDRAFT_04g029230 [Sorghum bicolor]
Length = 229
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 132/234 (56%), Positives = 153/234 (65%), Gaps = 31/234 (13%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI---IDRTS 57
MA+S VYI VI+DVISKVR++F+ G G++VLNELQ +WEMKM+ G I IDRT
Sbjct: 1 MASSNVSTVYISVIDDVISKVREDFITYGVGDAVLNELQALWEMKMLHCGAISGNIDRTK 60
Query: 58 APKQPAPG--GPITPVHDLNVPYEGT-EEYETPTAEILFPPTPLQTPIQTPLPGSTPLPG 114
A A G G PVHDLNVPYE T EEY TPTA++LFPPTPLQTPIQTPLPG+
Sbjct: 61 AAAPSAGGTTGTTPPVHDLNVPYEATSEEYATPTADMLFPPTPLQTPIQTPLPGT----- 115
Query: 115 STPLPGSTPLPGTADNSTYNIPTGSSDY-PTPASDSGGNTEAKSGN---GRPSSYMPPPP 170
D YNIPTG SDY P+P SD + GRPS YMPPP
Sbjct: 116 --------------DTGMYNIPTGPSDYAPSPISDIRNGMAINGADPKAGRPSPYMPPPS 161
Query: 171 SPWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQ 224
WM+ RP L VDVNVAYVEGR++ DRG QPLTQDF MS+GKRKR+++P Q
Sbjct: 162 P-WMSQRP-LGVDVNVAYVEGREDPDRGVQPQPLTQDFLMMSSGKRKRDEYPGQ 213
>gi|116789263|gb|ABK25179.1| unknown [Picea sitchensis]
Length = 398
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 126/245 (51%), Positives = 151/245 (61%), Gaps = 29/245 (11%)
Query: 18 ISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI---IDRTSAPKQPAPGGPITPVHDL 74
I +R EF N G +SVLNE+Q +WE+KM+Q G I ID S PITPVHDL
Sbjct: 35 IKSLRPEFQNEGLDDSVLNEVQALWELKMMQNGAIQGPIDHASNSALRGANAPITPVHDL 94
Query: 75 NVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGSTPLPGTADNSTYN 134
NVPYE TEEYETPTAE+LFPPTP+QTP+Q TPLPGTA+ Y
Sbjct: 95 NVPYEPTEEYETPTAEMLFPPTPVQTPMQ------------------TPLPGTAEPVMYQ 136
Query: 135 -IPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPRPPLSVDVNVAYVEGRD 193
P G + P + G + EAK GRP+ YM PP + WM+ + PL VDVN+AY E RD
Sbjct: 137 YFPPGPGE-PLATPELGIDPEAKI--GRPAPYMQPPAN-WMSQK-PLGVDVNIAYEEERD 191
Query: 194 EADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDGAGDAMSEIFE-LEVRF 252
E G S P+T+DFFT+S+GKRKRED P Y GGY IPQQDGAGD E+ + EV F
Sbjct: 192 EMAAGISQPPITKDFFTLSSGKRKREDHPPNYLPGGY-IPQQDGAGDFSWELVQSKEVEF 250
Query: 253 LSPLL 257
+ L
Sbjct: 251 ANQRL 255
>gi|413948831|gb|AFW81480.1| hypothetical protein ZEAMMB73_123227 [Zea mays]
Length = 246
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 119/212 (56%), Positives = 136/212 (64%), Gaps = 32/212 (15%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI---IDRTSAPKQPAPG 65
VYI VI+DVISKVR++F+ G G++VLNELQ +WEMKM+ G I IDRT A G
Sbjct: 53 VYISVIDDVISKVREDFITYGVGDAVLNELQALWEMKMLHCGAISGNIDRTKAAAASVGG 112
Query: 66 --GPITPVHDLNVPYEGT-EEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGST 122
G PVHDLNVPYE T EEY TPTA++LFPPTPLQTPIQTPLPG+
Sbjct: 113 TTGTTPPVHDLNVPYEATSEEYATPTADMLFPPTPLQTPIQTPLPGT------------- 159
Query: 123 PLPGTADNSTYNIPTGSSDY-PTPASDSGGNTEAKSGN---GRPSSYM--PPPPSPWMNP 176
D + YNIPTG SDY P+P SD + G PS YM PPPSPWMN
Sbjct: 160 ------DTAMYNIPTGPSDYAPSPISDVRNGMAINGADPTAGHPSPYMFLQPPPSPWMNQ 213
Query: 177 RPPLSVDVNVAYVEGRDEADRGTSHQPLTQDF 208
R PL VDVNVAYVEGR++ DRG QPLTQ+
Sbjct: 214 R-PLGVDVNVAYVEGREDPDRGVQPQPLTQNI 244
>gi|312283537|dbj|BAJ34634.1| unnamed protein product [Thellungiella halophila]
Length = 330
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 126/203 (62%), Positives = 143/203 (70%), Gaps = 34/203 (16%)
Query: 44 MKMIQAGVI---IDRTSAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQT 100
MKM+QAGV+ I+R+SA K P PGGP+T HDLNVPYEGTEEYETPTAE+LFPPT
Sbjct: 1 MKMMQAGVLSGPIERSSAQK-PTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPT---- 53
Query: 101 PIQTPLPGSTPLPGSTPLPGSTPLPGTADNST-YNIPTGSSDYPTPASDSGGNTEAKSGN 159
P TPLPGTADNS+ YNIPTGSSDYPTP +++G N +AK
Sbjct: 54 --------------PLQTPLPTPLPGTADNSSMYNIPTGSSDYPTPGTENGSNPDAK--- 96
Query: 160 GRPSSYMPPPPSPWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKRE 219
GRPS YM PPSPW NPR +DVNVAYV+GRDE +RG S+Q TQD F S GKRKR+
Sbjct: 97 GRPSPYM-QPPSPWTNPR----LDVNVAYVDGRDEPERGNSNQQFTQDLFVPSNGKRKRD 151
Query: 220 DFPAQYHNGGYNIPQQDGAGDAM 242
D AQY NGG +IPQQDGA DAM
Sbjct: 152 DSSAQYQNGG-SIPQQDGASDAM 173
>gi|1429226|emb|CAA67368.1| TFIIA [Arabidopsis thaliana]
Length = 375
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 123/217 (56%), Positives = 147/217 (67%), Gaps = 34/217 (15%)
Query: 3 TSATGMVYIRVIEDVISKVRDEFVNNG-PGESVLNELQGIWEMKMIQAGVI---IDRTSA 58
T+ T VYI VIEDV++KVR+EF+NNG PGESVL+ELQGIWE KM+QAGV+ I+R+SA
Sbjct: 4 TTTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSA 63
Query: 59 PKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPL 118
K P PGGP+T HDLNVPYEGTEEYETPTAE+LFPPT
Sbjct: 64 QK-PTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPT------------------PLQT 102
Query: 119 PGSTPLPGTADNST-YNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPR 177
P TPLPGTADNS+ YNIPTGSSDYPTP +++G N + K+ S PPPSPW NPR
Sbjct: 103 PLPTPLPGTADNSSMYNIPTGSSDYPTPGTENGVNIDVKA----RPSPYMPPPSPWTNPR 158
Query: 178 PPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAG 214
+DVNVAYV+GRDE ++ T L + + G
Sbjct: 159 ----LDVNVAYVDGRDEPEKETLTSSLRRIYLCHPLG 191
>gi|343172888|gb|AEL99147.1| transcription initiation factor TFIIA large subunit, partial
[Silene latifolia]
Length = 278
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/191 (51%), Positives = 111/191 (58%), Gaps = 33/191 (17%)
Query: 68 ITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGSTPLPGT 127
+ PVHDLNVPYEGTEEYETPTAE+LFPPTPLQTPIQ TPLPGT
Sbjct: 14 VAPVHDLNVPYEGTEEYETPTAEMLFPPTPLQTPIQ------------------TPLPGT 55
Query: 128 ADNST-YNIPTGSSDYPTPASDSGG-------NTEAKSGNGRPSSYMPPPPSPWMNPRPP 179
DNS+ YNIPTG N E + + P + R
Sbjct: 56 VDNSSMYNIPTGFQIIQLRTRMKSVVFIMLILNLELEGLVFTCHHLL-----PGLIKRSS 110
Query: 180 LSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDGAG 239
+ VDVNVAYVE R+E DR ++ Q TQDF T +GKRKR+D QY GGY IPQQDGAG
Sbjct: 111 VGVDVNVAYVENREEGDRRSAQQG-TQDFLTGPSGKRKRDDVLPQYQAGGY-IPQQDGAG 168
Query: 240 DAMSEIFELEV 250
DA EIFELE+
Sbjct: 169 DAAPEIFELEI 179
>gi|343172890|gb|AEL99148.1| transcription initiation factor TFIIA large subunit, partial
[Silene latifolia]
Length = 278
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 99/191 (51%), Positives = 110/191 (57%), Gaps = 33/191 (17%)
Query: 68 ITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGSTPLPGT 127
+ PVHDLNVPYEGTEEYETPTAE+LFPPTPLQTPIQ TPLPGT
Sbjct: 14 VAPVHDLNVPYEGTEEYETPTAEMLFPPTPLQTPIQ------------------TPLPGT 55
Query: 128 ADNST-YNIPTGSSDYPTPASDSGG-------NTEAKSGNGRPSSYMPPPPSPWMNPRPP 179
DNS+ YNIPTG N E + + P + R
Sbjct: 56 VDNSSMYNIPTGFQIIQLRTRMKSVVFIMLILNLELEGLVFTCHHLL-----PGLIKRSS 110
Query: 180 LSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDGAG 239
+ VDVNVAYVE R+E DR S Q TQDF T +GKRKR+D QY GGY IPQQDGAG
Sbjct: 111 VGVDVNVAYVENREEGDR-RSLQQGTQDFLTGPSGKRKRDDVLPQYQAGGY-IPQQDGAG 168
Query: 240 DAMSEIFELEV 250
DA EIFELE+
Sbjct: 169 DAAPEIFELEI 179
>gi|302822167|ref|XP_002992743.1| hypothetical protein SELMODRAFT_430900 [Selaginella moellendorffii]
gi|300139484|gb|EFJ06224.1| hypothetical protein SELMODRAFT_430900 [Selaginella moellendorffii]
Length = 215
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 98/244 (40%), Positives = 126/244 (51%), Gaps = 68/244 (27%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI----IDRT 56
MATS VY+ V+EDVI+ VR +F ESVLN+LQ +WE+KMIQ+G I I +
Sbjct: 1 MATSVAS-VYLHVMEDVINNVRADFQAENVEESVLNDLQSLWELKMIQSGTISPGEIPQN 59
Query: 57 SAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGST 116
+ A T V DLN+PY+G+EE+ TPTAE+LF P STP PG
Sbjct: 60 LGVRNAA--AQATSVQDLNIPYQGSEEF-TPTAELLFSPY------------STPTPG-- 102
Query: 117 PLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNP 176
P TP+ A SGG+ S N R
Sbjct: 103 --PDQTPI---------------------ADKSGGD---DSHNHR--------------- 121
Query: 177 RPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQD 236
VDVNVAY EG+++ + G+ P+T+DFFT+++GKRKR+D PA Y G Y IPQ D
Sbjct: 122 ----GVDVNVAYQEGQEDEENGSGQGPVTKDFFTLTSGKRKRDDLPANYFPGDY-IPQHD 176
Query: 237 GAGD 240
GA D
Sbjct: 177 GAAD 180
>gi|302824123|ref|XP_002993707.1| hypothetical protein SELMODRAFT_431754 [Selaginella moellendorffii]
gi|300138431|gb|EFJ05199.1| hypothetical protein SELMODRAFT_431754 [Selaginella moellendorffii]
Length = 217
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 125/244 (51%), Gaps = 68/244 (27%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI----IDRT 56
MATS VY+ V+EDVI+ VR +F ESVLN+LQ +WE+KMIQ+G I I +
Sbjct: 1 MATSVAS-VYLHVMEDVINNVRADFQAENVEESVLNDLQSLWELKMIQSGTISPGEIPQN 59
Query: 57 SAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGST 116
+ A T V DLN+PY+ +EE+ TPTAE+LF P STP PG
Sbjct: 60 LGVRNAA--AQATSVQDLNIPYQASEEF-TPTAELLFSPY------------STPTPG-- 102
Query: 117 PLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNP 176
P TP+ +D GG ++ + G
Sbjct: 103 --PDQTPI----------------------ADKGGGDDSHNHRG---------------- 122
Query: 177 RPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQD 236
VDVNVAY EG+++ + G+ P+T+DFFT+++GKRKR+D PA Y G Y IPQ D
Sbjct: 123 -----VDVNVAYQEGQEDEENGSGQGPVTKDFFTLTSGKRKRDDLPANYFPGDY-IPQHD 176
Query: 237 GAGD 240
GA D
Sbjct: 177 GAAD 180
>gi|168022370|ref|XP_001763713.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685206|gb|EDQ71603.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 410
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 96/269 (35%), Positives = 132/269 (49%), Gaps = 50/269 (18%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSA-- 58
MA S + VY+ V+EDVI+ VR +F + G ++VLNELQ +WE+K++Q+G I D T+
Sbjct: 13 MAMSVSN-VYLHVVEDVINNVRIDFQSEGVDDNVLNELQSLWELKLVQSGAIQDPTAHDP 71
Query: 59 ----PKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPG 114
+P P TPV DLN PY EEYETP + FP P T + P+ +P
Sbjct: 72 LANPAAKPIPQTVATPVLDLNGPYVAAEEYETPPND--FPRVPASTSSREPVMFQY-MP- 127
Query: 115 STPLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWM 174
PG ++ S P P + GNG PSSYM P S WM
Sbjct: 128 ----------PGPSEESLQIDPGQQHLAP------------RIGNGTPSSYMQQPAS-WM 164
Query: 175 NPRPP-LSVDVNVAYVEGRDEAD------RGTSHQPLTQDFFTMSAGKRKREDFPAQYHN 227
N + + +++N Y E + D P+T+DF T+S GKRK ++ +
Sbjct: 165 NQKHRGVELNMNETYEEREGDTDTAQAPVAAPGAPPITKDFLTISTGKRKHDEISS---- 220
Query: 228 GGYNIPQQDGAGD-----AMSEIFELEVR 251
G Y IPQ+DGA D +M E E E R
Sbjct: 221 GQYYIPQRDGAVDDELSTSMGETCENEGR 249
>gi|222630980|gb|EEE63112.1| hypothetical protein OsJ_17920 [Oryza sativa Japonica Group]
Length = 331
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 99/250 (39%), Positives = 123/250 (49%), Gaps = 83/250 (33%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPK 60
MA+S VYI VI+DVISKVRD+F++ G G++V + +QA
Sbjct: 1 MASSNVSTVYISVIDDVISKVRDDFISYGVGDAV---------LNELQA----------- 40
Query: 61 QPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPG 120
TPLQTPIQTPLPG+
Sbjct: 41 -----------------------------------TPLQTPIQTPLPGT----------- 54
Query: 121 STPLPGTADNSTYNIPTGSSDY-PTPASDSGGNTEAKSG----NGRPSSYMPPPPSPWMN 175
D YNIPTG SDY P+P SD N A +G GRPS YMPPP WM
Sbjct: 55 --------DAGMYNIPTGPSDYAPSPISDVR-NGMAMNGADPKTGRPSPYMPPPSP-WMT 104
Query: 176 PRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQ 235
RP L VDVNVAYVE R++ DR LT+DF MS+GKRKR+++P Q +G + +PQQ
Sbjct: 105 QRP-LGVDVNVAYVENREDPDRTGQPPQLTKDFLMMSSGKRKRDEYPGQLPSGSF-VPQQ 162
Query: 236 DGAGDAMSEI 245
DG+ D + E
Sbjct: 163 DGSADQIVEF 172
>gi|168046540|ref|XP_001775731.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672883|gb|EDQ59414.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 400
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 121/252 (48%), Gaps = 47/252 (18%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPK 60
MA S + VY+ V+EDVI+ VR +F + G +++LNELQ +WE+K++Q+G I + ++
Sbjct: 13 MAMSVSN-VYLHVVEDVINNVRTDFQSEGVDDNILNELQSLWELKLVQSGAIQEPSAHDA 71
Query: 61 QPA----PGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGST 116
PA P TPV DLN P EEYE P F P T + P+ PG
Sbjct: 72 NPAAKPIPQTVATPVLDLNGPV-AAEEYEAPPN--YFSQAPASTSSREPVVFQYMPPG-- 126
Query: 117 PLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNP 176
P S L +SG ++ GNG PSSYM P S WMN
Sbjct: 127 PREESLQL-----------------------NSGHQPASRIGNGAPSSYMQQPAS-WMNQ 162
Query: 177 RPPLSVDVNVAYVEGRDEADRGTSHQ--------PLTQDFFTMSAGKRKREDFPAQYHNG 228
+ V+VN+ D G + P+T+DF T+S GKRK ++ + G
Sbjct: 163 K-HRGVEVNMNETYEERAVDNGLAQGLNTAQGAPPITKDFLTISTGKRKHDEISS----G 217
Query: 229 GYNIPQQDGAGD 240
Y IPQ+DGA D
Sbjct: 218 NYYIPQRDGAAD 229
>gi|17065294|gb|AAL32801.1| similar to TFIIA [Arabidopsis thaliana]
gi|30023680|gb|AAP13373.1| At1g07480 [Arabidopsis thaliana]
Length = 218
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 48/66 (72%), Gaps = 2/66 (3%)
Query: 186 VAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDGAGDAMSEI 245
+AYV+GRDE +RG S+Q TQD F S+GKRKR+D Y NGG +IPQQDGAGDA+ E
Sbjct: 6 LAYVDGRDEPERGNSNQQFTQDLFVPSSGKRKRDDSSGHYQNGG-SIPQQDGAGDAIPEA 64
Query: 246 -FELEV 250
FE +
Sbjct: 65 NFECDA 70
>gi|384252956|gb|EIE26431.1| hypothetical protein COCSUDRAFT_64488 [Coccomyxa subellipsoidea
C-169]
Length = 258
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 11/107 (10%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPK 60
M S+ VY VI+DVI++V+ +FV G E+VL+EL+ +WE K+ Q+GV ++ +AP
Sbjct: 1 MQDSSVSTVYRNVIDDVIARVKADFVQEGVDEAVLDELRVLWEAKLQQSGV-LEPENAPT 59
Query: 61 QPAPGGP---ITPVHDLNVPYEGTEEYETP---TAEILFPPTPLQTP 101
G P +TP L P ++Y P TA + P PLQ P
Sbjct: 60 HALSGLPPQYLTP--GLQAPKIEQQQYGRPGFQTASVQQP--PLQAP 102
>gi|297796855|ref|XP_002866312.1| hypothetical protein ARALYDRAFT_496033 [Arabidopsis lyrata subsp.
lyrata]
gi|297312147|gb|EFH42571.1| hypothetical protein ARALYDRAFT_496033 [Arabidopsis lyrata subsp.
lyrata]
Length = 184
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGP-GESVLNELQGIWEMKMIQAGVI 52
++TS T Y VI+DVI+K R E V NG ESVL+++Q +W+ KMIQAGVI
Sbjct: 3 LSTSDTSTSYNYVIDDVINKSRCELVYNGELEESVLSQIQSVWKTKMIQAGVI 55
>gi|413944875|gb|AFW77524.1| hypothetical protein ZEAMMB73_875019 [Zea mays]
Length = 119
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 32/41 (78%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGI 41
MA+S VYI VI+DVISKVR++F+ G G++VLNELQ +
Sbjct: 46 MASSNVSTVYISVIDDVISKVREDFITYGVGDAVLNELQAV 86
>gi|15237841|ref|NP_200731.1| transcription factor-related protein [Arabidopsis thaliana]
gi|9759244|dbj|BAB09768.1| unnamed protein product [Arabidopsis thaliana]
gi|39545874|gb|AAR28000.1| TFIIA-L3 [Arabidopsis thaliana]
gi|332009777|gb|AED97160.1| transcription factor-related protein [Arabidopsis thaliana]
Length = 186
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 61/137 (44%), Gaps = 37/137 (27%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGP-GESVLNELQGIWEMKMIQAGVIIDRTSAP 59
++TS T Y VI+DVI+K R + V NG ESVL+++Q +W+ KMIQAG
Sbjct: 3 LSTSDTSSSYNYVIDDVINKSRCDLVYNGELDESVLSQIQSMWKTKMIQAG--------- 53
Query: 60 KQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLP 119
A G I ET +A I P +QT +QT P + PLP
Sbjct: 54 ---AMSGTI----------------ETSSASIPTTPVIVQTTLQT--------PDAIPLP 86
Query: 120 GSTPLPGTADNSTYNIP 136
P + Y IP
Sbjct: 87 EKKMSPKKESDGFYYIP 103
>gi|68470856|ref|XP_720435.1| hypothetical protein CaO19.2682 [Candida albicans SC5314]
gi|68471314|ref|XP_720205.1| hypothetical protein CaO19.10197 [Candida albicans SC5314]
gi|46442061|gb|EAL01353.1| hypothetical protein CaO19.10197 [Candida albicans SC5314]
gi|46442302|gb|EAL01592.1| hypothetical protein CaO19.2682 [Candida albicans SC5314]
Length = 275
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 33/51 (64%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ + T +Y VIEDVI+ R +F NNG ES L EL+ IW K+ Q+GV
Sbjct: 1 MSNTETSKLYESVIEDVINDSRQDFENNGIDESTLQELRRIWCEKLTQSGV 51
>gi|390602132|gb|EIN11525.1| transcription factor IIA alpha/beta subunit [Punctularia
strigosozonata HHB-11173 SS5]
Length = 290
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI-IDRTSAP 59
M+ +Y VI+DVI+ ++ EF G GE VL ELQ WE K+IQ+GV D A
Sbjct: 1 MSNKIVPTIYRAVIDDVIAAIKPEFDEYGVGEEVLAELQSKWETKVIQSGVADFDPAHAM 60
Query: 60 KQPAPGGPITPVH 72
+ PA P +H
Sbjct: 61 QAPAAHYPPHAMH 73
>gi|241954470|ref|XP_002419956.1| transcription factor IIA (TFIIA) subunit alpha, putative [Candida
dubliniensis CD36]
gi|223643297|emb|CAX42171.1| transcription factor IIA (TFIIA) subunit alpha, putative [Candida
dubliniensis CD36]
Length = 268
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 32/51 (62%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ T +Y VIEDVI+ R +F NNG ES L EL+ IW K+ Q+GV
Sbjct: 1 MSNIETSKLYESVIEDVINDSRQDFENNGIDESTLQELRRIWCEKLTQSGV 51
>gi|238881539|gb|EEQ45177.1| hypothetical protein CAWG_03491 [Candida albicans WO-1]
Length = 275
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ + +Y VIEDVI+ R +F NNG ES L EL+ IW K+ Q+GV
Sbjct: 1 MSNTEISKLYESVIEDVINDSRQDFENNGIDESTLQELRRIWCEKLTQSGV 51
>gi|380011560|ref|XP_003689869.1| PREDICTED: transcription initiation factor IIA subunit 1-like
isoform 1 [Apis florea]
Length = 385
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MATSATGMV--YIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA S T ++ Y VIEDVIS VR+ F++ G E VL EL+ IWE K++ + +
Sbjct: 1 MALSQTSVLKLYNTVIEDVISGVRESFIDEGVDEQVLQELKQIWETKLMSSKAV 54
>gi|328793106|ref|XP_003251828.1| PREDICTED: transcription initiation factor IIA subunit 1 isoform
1 [Apis mellifera]
Length = 384
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MATSATGMV--YIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA S T ++ Y VIEDVIS VR+ F++ G E VL EL+ IWE K++ + +
Sbjct: 1 MALSQTSVLKLYNTVIEDVISGVRESFIDEGVDEQVLQELKQIWETKLMSSKAV 54
>gi|332226469|ref|XP_003262412.1| PREDICTED: TFIIA-alpha and beta-like factor-like [Nomascus
leucogenys]
gi|441641692|ref|XP_004090392.1| PREDICTED: TFIIA-alpha and beta-like factor-like [Nomascus
leucogenys]
Length = 1182
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI +VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 714 LYRSVIEDVIERVRNLFAEEGIQEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 766
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 767 SPLFTLQLPHSLHQTLQSSTASLVIP 792
>gi|328793108|ref|XP_395730.3| PREDICTED: transcription initiation factor IIA subunit 1 isoform
2 [Apis mellifera]
Length = 358
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MATSATGMV--YIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA S T ++ Y VIEDVIS VR+ F++ G E VL EL+ IWE K++ + +
Sbjct: 1 MALSQTSVLKLYNTVIEDVISGVRESFIDEGVDEQVLQELKQIWETKLMSSKAV 54
>gi|380011562|ref|XP_003689870.1| PREDICTED: transcription initiation factor IIA subunit 1-like
isoform 2 [Apis florea]
Length = 359
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MATSATGMV--YIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA S T ++ Y VIEDVIS VR+ F++ G E VL EL+ IWE K++ + +
Sbjct: 1 MALSQTSVLKLYNTVIEDVISGVRESFIDEGVDEQVLQELKQIWETKLMSSKAV 54
>gi|440795446|gb|ELR16566.1| transcription factor iia, alpha/beta subunit protein
[Acanthamoeba castellanii str. Neff]
Length = 255
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 4 SATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQA 49
++T VY V+EDVI ++ EF++ G ESVL ELQ +WE K+ Q+
Sbjct: 2 TSTSSVYKYVMEDVIKNIKHEFLSEGIPESVLAELQQVWEAKLAQS 47
>gi|148670779|gb|EDL02726.1| mCG50192 [Mus musculus]
Length = 382
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 31/44 (70%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+N+G E VL EL+ +WE ++Q+ +
Sbjct: 13 LYRSVIEDVINDVRDIFLNDGVDEQVLTELKALWEKNLLQSRAV 56
>gi|393246685|gb|EJD54193.1| hypothetical protein AURDEDRAFT_109941 [Auricularia delicata
TFB-10046 SS5]
Length = 278
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 62/147 (42%), Gaps = 22/147 (14%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPK 60
M+ Y VI+DVI V+ EF + G ESVL +L W+ K++ + V P
Sbjct: 1 MSNKIVPTTYRAVIDDVIQSVKAEFESFGVDESVLADLHNRWQHKVVSSHVADFEPIQPV 60
Query: 61 QPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPG--------STPL 112
P P P T H L Y G + P + P PL T P PG PL
Sbjct: 61 LP-PAAPPTSTHPLPA-YNGVQIKHEPQDAVPGPQQPLYT--MAPAPGLYAFAPQLRGPL 116
Query: 113 -PGSTPLPGSTPLPGTADNSTYNIPTG 138
PG+ P PG TP Y IPTG
Sbjct: 117 PPGARPGPGVTP---------YMIPTG 134
>gi|340713524|ref|XP_003395292.1| PREDICTED: transcription initiation factor IIA subunit 1-like
isoform 1 [Bombus terrestris]
gi|340713526|ref|XP_003395293.1| PREDICTED: transcription initiation factor IIA subunit 1-like
isoform 2 [Bombus terrestris]
gi|350409465|ref|XP_003488747.1| PREDICTED: transcription initiation factor IIA subunit 1-like
isoform 1 [Bombus impatiens]
Length = 382
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MATSATGMV--YIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA S T ++ Y VIEDVIS VR+ F++ G E VL EL+ IWE K++ + +
Sbjct: 1 MALSQTTVLKLYNTVIEDVISGVRESFIDEGVDEQVLQELKQIWETKLMSSKAV 54
>gi|332226467|ref|XP_003262411.1| PREDICTED: TFIIA-alpha and beta-like factor-like [Nomascus
leucogenys]
Length = 478
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI +VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 10 LYRSVIEDVIERVRNLFAEEGIQEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 62
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 63 SPLFTLQLPHSLHQTLQSSTASLVIP 88
>gi|242018053|ref|XP_002429497.1| transcription initiation factor IIA alpha chain TFIIA p30,
putative [Pediculus humanus corporis]
gi|212514435|gb|EEB16759.1| transcription initiation factor IIA alpha chain TFIIA p30,
putative [Pediculus humanus corporis]
Length = 359
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPK 60
++ S +Y VIEDV++ VR+ F+++G E VL EL+ IWE K+ Q+ ++ T P+
Sbjct: 3 LSQSTVLQLYHSVIEDVVTNVRESFLDDGVDEQVLQELKQIWESKL-QSTKAVELTPEPQ 61
Query: 61 QPAPGG 66
+P G
Sbjct: 62 EPQNVG 67
>gi|340713528|ref|XP_003395294.1| PREDICTED: transcription initiation factor IIA subunit 1-like
isoform 3 [Bombus terrestris]
gi|350409467|ref|XP_003488748.1| PREDICTED: transcription initiation factor IIA subunit 1-like
isoform 2 [Bombus impatiens]
Length = 360
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MATSATGMV--YIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA S T ++ Y VIEDVIS VR+ F++ G E VL EL+ IWE K++ + +
Sbjct: 1 MALSQTTVLKLYNTVIEDVISGVRESFIDEGVDEQVLQELKQIWETKLMSSKAV 54
>gi|344291826|ref|XP_003417631.1| PREDICTED: stonin-1 [Loxodonta africana]
Length = 1079
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 11/89 (12%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIID--RTSAPKQPAPGG 66
+Y VIEDVI +VR+ F G E VL +L+ +WE K++Q+ D R S
Sbjct: 726 LYRSVIEDVIERVRNLFAEEGIEEQVLKDLKQLWETKILQSKATDDFFRNSIH------- 778
Query: 67 PITPVHDLNVPYEGTEEYETPTAEILFPP 95
+P+ L +P+ + +T A ++ PP
Sbjct: 779 --SPLFTLQLPHGLHQTLQTSAAPLVIPP 805
>gi|307213766|gb|EFN89104.1| Transcription initiation factor IIA subunit 1 [Harpegnathos
saltator]
Length = 367
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
++ S +Y VIEDVIS VR+ F++ G E VL EL+ IWE K++ +
Sbjct: 3 LSHSTVLKLYNTVIEDVISGVRESFIDEGVDEQVLQELKQIWETKLLSCKAV 54
>gi|390360055|ref|XP_003729621.1| PREDICTED: uncharacterized protein LOC100888480
[Strongylocentrotus purpuratus]
Length = 171
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPG 65
+Y VI+DVI+ VR+ F++ G E VL +L+ IWE K+IQ+ ID P Q A G
Sbjct: 11 LYKSVIDDVINNVREAFLDEGVEEPVLQDLKQIWESKLIQSRA-IDLAQKPPQQAAG 66
>gi|340713530|ref|XP_003395295.1| PREDICTED: transcription initiation factor IIA subunit 1-like
isoform 4 [Bombus terrestris]
Length = 333
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MATSATGMV--YIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA S T ++ Y VIEDVIS VR+ F++ G E VL EL+ IWE K++ + +
Sbjct: 1 MALSQTTVLKLYNTVIEDVISGVRESFIDEGVDEQVLQELKQIWETKLMSSKAV 54
>gi|344249722|gb|EGW05826.1| Stonin-2 [Cricetulus griseus]
Length = 1216
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 874 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 917
>gi|301753275|ref|XP_002912472.1| PREDICTED: stonin-1-like [Ailuropoda melanoleuca]
gi|281352647|gb|EFB28231.1| hypothetical protein PANDA_000224 [Ailuropoda melanoleuca]
Length = 1181
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIID--RTSAPKQPAPGG 66
+Y VIEDVI VRD F G E VL +L+ +WE K++Q+ D R S
Sbjct: 714 LYRSVIEDVIEGVRDLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSVH------- 766
Query: 67 PITPVHDLNVPYEGTEEYETPTAEILFP 94
+PV L +P + ++ TA ++ P
Sbjct: 767 --SPVFTLQLPNSLHQTLQSSTASLVIP 792
>gi|195449174|ref|XP_002071958.1| GK22574 [Drosophila willistoni]
gi|194168043|gb|EDW82944.1| GK22574 [Drosophila willistoni]
Length = 379
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MATSATGM--VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA T + VY VIEDVIS VRD F++ G E VL E++ IW K++ + +
Sbjct: 1 MALCQTSVLKVYHAVIEDVISNVRDAFLDEGVDEQVLQEMKQIWRNKLMASKAV 54
>gi|307179337|gb|EFN67701.1| Transcription initiation factor IIA subunit 1 [Camponotus
floridanus]
Length = 373
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MATSATGMV--YIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA S T ++ Y VIEDVI+ VR+ F++ G E VL EL+ IWE K++ + +
Sbjct: 1 MALSQTSVLKLYNTVIEDVIAGVRESFIDEGVDEQVLQELKQIWETKLMASKAV 54
>gi|395827875|ref|XP_003787117.1| PREDICTED: transcription initiation factor IIA subunit 1 [Otolemur
garnettii]
Length = 465
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 101 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 144
>gi|281207897|gb|EFA82076.1| transcription factor IIA [Polysphondylium pallidum PN500]
Length = 339
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
VY +I+DVI +R EFVN G + ++ ELQ +WE +++Q+G +
Sbjct: 6 VYRYIIDDVIRNIRIEFVNEGLEDRIIAELQHMWESRLMQSGAV 49
>gi|348573205|ref|XP_003472382.1| PREDICTED: transcription initiation factor IIA subunit 1-like
[Cavia porcellus]
Length = 561
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 198 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWESKLMQSRAV 241
>gi|345804050|ref|XP_854907.2| PREDICTED: transcription initiation factor IIA subunit 1 [Canis
lupus familiaris]
Length = 646
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 283 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 326
>gi|196016011|ref|XP_002117860.1| hypothetical protein TRIADDRAFT_61892 [Trichoplax adhaerens]
gi|190579529|gb|EDV19622.1| hypothetical protein TRIADDRAFT_61892 [Trichoplax adhaerens]
Length = 200
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VI DVI +R F+N G E VL EL+ WE+K++Q+ + + + ++ A +
Sbjct: 13 LYHYVINDVIRSIRQSFLNRGVDEQVLQELKSQWELKIVQSRSVKEFVAEDQRTASASNV 72
Query: 69 TPVHDLNVPYEGTEEY-ETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGS 121
H P + + T ++ F + + L ++ P + G+
Sbjct: 73 MYPHGNRFPIDALSQVNNTRHSKGTFSVYIFTSQTKCLLNNASEFPSYSASTGA 126
>gi|195390121|ref|XP_002053717.1| GJ24046 [Drosophila virilis]
gi|194151803|gb|EDW67237.1| GJ24046 [Drosophila virilis]
Length = 379
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MATSATGM--VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA T + VY VIEDVIS VRD F++ G E VL E++ IW K++ + +
Sbjct: 1 MALCQTSVLKVYHAVIEDVISNVRDAFLDEGVDEQVLQEMKQIWRNKLLASKAV 54
>gi|383849463|ref|XP_003700364.1| PREDICTED: transcription initiation factor IIA subunit 1-like
[Megachile rotundata]
Length = 360
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MATSATGMV--YIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
M+ S T ++ Y VIEDVIS VR+ F++ G E VL EL+ IWE K++ + +
Sbjct: 1 MSLSQTSVLKLYNTVIEDVISGVRESFIDEGVDEQVLQELKQIWETKLMSSKAV 54
>gi|391342868|ref|XP_003745737.1| PREDICTED: transcription initiation factor IIA subunit 1-like
[Metaseiulus occidentalis]
Length = 357
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 36/148 (24%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPK 60
M++ G +Y VI+DVI+ V+D F++ E VL EL+ +WE K+ + I P+
Sbjct: 1 MSSVTVGRIYKSVIDDVITGVKDAFLDENADEQVLMELKQLWEKKLADSKAI-----EPQ 55
Query: 61 QPAPGGPITPVH----DLNVP------YEGT---EEYETPTAEILFPPTPL--------- 98
+P P+ V+ D NVP G+ E+Y P ++ P+
Sbjct: 56 EPP--APLVKVNSNKADSNVPPGITIQRSGSTPNEQYNYPQVRVIQQSQPMVHYPGTAAS 113
Query: 99 -------QTPIQTPLPGSTPLPGSTPLP 119
TP+ +P T PG+ LP
Sbjct: 114 SIGGHSGNTPVALRVPAPTNQPGAITLP 141
>gi|19112462|ref|NP_595670.1| transcription factor TFIIA complex large subunit Toa1 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|74625878|sp|Q9USU9.1|TOA1_SCHPO RecName: Full=Transcription initiation factor IIA large subunit;
Short=TFIIA large subunit
gi|6018693|emb|CAB57938.1| transcription factor TFIIA complex large subunit Toa1 (predicted)
[Schizosaccharomyces pombe]
Length = 369
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ S G VY VI DVI+ R +F NG ++ L ELQ +W+ K++ V
Sbjct: 1 MSNSIVGEVYHHVILDVIANSRSDFEENGVDDATLRELQNLWQSKLVATDV 51
>gi|325651980|ref|NP_001191772.1| TFIIA-alpha and beta-like factor [Canis lupus familiaris]
Length = 476
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIID--RTSAPKQPAPGG 66
+Y VIEDVI VRD F G E VL +L+ +WE K++Q+ D R S
Sbjct: 10 LYRSVIEDVIEGVRDLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSVH------- 62
Query: 67 PITPVHDLNVPYEGTEEYETPTAEILFP 94
+PV L +P + ++ TA ++ P
Sbjct: 63 --SPVFTLQLPNSLHQTLQSSTASLVIP 88
>gi|297265978|ref|XP_002808082.1| PREDICTED: LOW QUALITY PROTEIN: stonin-1-like [Macaca mulatta]
Length = 1182
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 714 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 766
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPG 120
+P+ L +P+ + ++ TA ++ P T G++ + PG
Sbjct: 767 SPLFTLQLPHSLHQTLQSATASLVIPAGRTLXSFTTAELGTSNSSANFTFPG 818
>gi|402890863|ref|XP_003908691.1| PREDICTED: stonin-1 [Papio anubis]
gi|402890865|ref|XP_003908692.1| PREDICTED: stonin-1 [Papio anubis]
Length = 1182
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 714 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 766
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 767 SPLFTLQLPHSLHQTLQSATASLVIP 792
>gi|355565684|gb|EHH22113.1| hypothetical protein EGK_05316 [Macaca mulatta]
Length = 1182
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 714 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 766
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 767 SPLFTLQLPHSLHQTLQSATASLVIP 792
>gi|403260710|ref|XP_003922802.1| PREDICTED: stonin-1 isoform 1 [Saimiri boliviensis boliviensis]
gi|403260712|ref|XP_003922803.1| PREDICTED: stonin-1 isoform 2 [Saimiri boliviensis boliviensis]
Length = 1182
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 714 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 766
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 767 SPLFTLQLPHNLHQTLQSSTASLVIP 792
>gi|351694362|gb|EHA97280.1| Transcription initiation factor IIA subunit 1 [Heterocephalus
glaber]
Length = 393
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 30 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWESKLMQSRAV 73
>gi|310703592|ref|NP_001185522.1| STON1-GTF2A1L protein isoform 2 [Homo sapiens]
Length = 1158
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 714 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 766
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 767 SPLFTLQLPHSLHQTLQSSTASLVIP 792
>gi|75516982|gb|AAI01773.1| STON1-GTF2A1L readthrough transcript [Homo sapiens]
gi|75517271|gb|AAI01775.1| STON1-GTF2A1L readthrough transcript [Homo sapiens]
Length = 1182
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 714 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 766
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 767 SPLFTLQLPHSLHQTLQSSTASLVIP 792
>gi|119620600|gb|EAX00195.1| hCG16775 [Homo sapiens]
Length = 1182
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 714 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 766
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 767 SPLFTLQLPHSLHQTLQSSTASLVIP 792
>gi|5091669|gb|AAD39617.1|AF026169_1 SALF [Homo sapiens]
Length = 1182
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 714 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 766
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 767 SPLFTLQLPHSLHQTLQSSTASLVIP 792
>gi|29553944|ref|NP_758515.1| STON1-GTF2A1L protein isoform 1 [Homo sapiens]
gi|62822516|gb|AAY15064.1| unknown [Homo sapiens]
Length = 1182
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 714 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 766
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 767 SPLFTLQLPHSLHQTLQSSTASLVIP 792
>gi|397504297|ref|XP_003822737.1| PREDICTED: stonin-1 [Pan paniscus]
Length = 1182
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 714 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 766
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 767 SPLFTLQLPHSLHQTLQSSTASLVIP 792
>gi|349802591|gb|AEQ16768.1| putative tfiiaa b-2 protein [Pipa carvalhoi]
Length = 170
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 4/56 (7%)
Query: 1 MATSATG----MVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MATSA +Y VIEDVI+ VR+ F++ G E VL EL+ +WE K++Q+ +
Sbjct: 1 MATSANANPVPKLYRSVIEDVINDVRELFLDEGVDEQVLLELKTLWESKLMQSKAV 56
>gi|390177658|ref|XP_003736448.1| GA19238, isoform B [Drosophila pseudoobscura pseudoobscura]
gi|388859138|gb|EIM52521.1| GA19238, isoform B [Drosophila pseudoobscura pseudoobscura]
Length = 359
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MATSATGM--VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA T + VY VIEDVI+ VRD F++ G E VL E++ IW K++ + +
Sbjct: 1 MALCQTSVLKVYHAVIEDVITNVRDAFLDEGVDEQVLQEMKQIWRNKLLASKAV 54
>gi|260830589|ref|XP_002610243.1| hypothetical protein BRAFLDRAFT_126818 [Branchiostoma floridae]
gi|229295607|gb|EEN66253.1| hypothetical protein BRAFLDRAFT_126818 [Branchiostoma floridae]
Length = 311
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 3 TSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+SA +Y VI+DVI+ VR+ F++ E VL EL+ +WE K++Q+ +
Sbjct: 4 SSAVSKLYRSVIDDVINNVREAFLDEQVDEQVLQELKQVWETKLLQSKAV 53
>gi|195146200|ref|XP_002014075.1| GL24482 [Drosophila persimilis]
gi|194103018|gb|EDW25061.1| GL24482 [Drosophila persimilis]
Length = 177
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MATSATGM--VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA T + VY VIEDVI+ VRD F++ G E VL E++ IW K++ + +
Sbjct: 1 MALCQTSVLKVYHAVIEDVITNVRDAFLDEGVDEQVLQEMKQIWRNKLLASKAV 54
>gi|426335514|ref|XP_004029265.1| PREDICTED: TFIIA-alpha and beta-like factor-like isoform 2 [Gorilla
gorilla gorilla]
Length = 1186
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 718 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 770
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 771 SPLFTLQLPHSLHQTLQSSTASLVIP 796
>gi|74145967|dbj|BAE24208.1| unnamed protein product [Mus musculus]
Length = 297
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 37/53 (69%), Gaps = 4/53 (7%)
Query: 1 MATSA---TG-MVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQA 49
MA SA TG +Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+
Sbjct: 1 MANSANTNTGPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQS 53
>gi|338719816|ref|XP_001492421.2| PREDICTED: transcription initiation factor IIA subunit 1 [Equus
caballus]
Length = 377
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 14 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 57
>gi|198451436|ref|XP_001358368.2| GA19238, isoform A [Drosophila pseudoobscura pseudoobscura]
gi|198131489|gb|EAL27507.2| GA19238, isoform A [Drosophila pseudoobscura pseudoobscura]
Length = 356
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MATSATGM--VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA T + VY VIEDVI+ VRD F++ G E VL E++ IW K++ + +
Sbjct: 1 MALCQTSVLKVYHAVIEDVITNVRDAFLDEGVDEQVLQEMKQIWRNKLLASKAV 54
>gi|291406681|ref|XP_002719614.1| PREDICTED: TFIIA alpha, p55 [Oryctolagus cuniculus]
Length = 387
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 24 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 67
>gi|197098738|ref|NP_001125209.1| transcription initiation factor IIA subunit 1 [Pongo abelii]
gi|67462024|sp|Q5RCU0.1|TF2AA_PONAB RecName: Full=Transcription initiation factor IIA subunit 1;
AltName: Full=General transcription factor IIA subunit
1; Contains: RecName: Full=Transcription initiation
factor IIA alpha chain; AltName: Full=TFIIA p35
subunit; Contains: RecName: Full=Transcription
initiation factor IIA beta chain; AltName: Full=TFIIA
p19 subunit
gi|55727322|emb|CAH90417.1| hypothetical protein [Pongo abelii]
Length = 376
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 13 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 56
>gi|114654237|ref|XP_001134883.1| PREDICTED: transcription initiation factor IIA subunit 1 isoform
2 [Pan troglodytes]
gi|410210940|gb|JAA02689.1| general transcription factor IIA, 1, 19/37kDa [Pan troglodytes]
gi|410256268|gb|JAA16101.1| general transcription factor IIA, 1, 19/37kDa [Pan troglodytes]
gi|410301958|gb|JAA29579.1| general transcription factor IIA, 1, 19/37kDa [Pan troglodytes]
gi|410331531|gb|JAA34712.1| general transcription factor IIA, 1, 19/37kDa [Pan troglodytes]
Length = 376
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 4/56 (7%)
Query: 1 MATSATG----MVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA SA +Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 1 MANSANTNTVPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 56
>gi|332223449|ref|XP_003260883.1| PREDICTED: transcription initiation factor IIA subunit 1 isoform
1 [Nomascus leucogenys]
Length = 376
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 13 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 56
>gi|7706735|ref|NP_056943.1| transcription initiation factor IIA subunit 1 isoform 1 [Homo
sapiens]
gi|383872924|ref|NP_001244639.1| transcription initiation factor IIA subunit 1 [Macaca mulatta]
gi|397475002|ref|XP_003808944.1| PREDICTED: transcription initiation factor IIA subunit 1 isoform
1 [Pan paniscus]
gi|402876874|ref|XP_003902177.1| PREDICTED: transcription initiation factor IIA subunit 1 isoform
1 [Papio anubis]
gi|1711663|sp|P52655.1|TF2AA_HUMAN RecName: Full=Transcription initiation factor IIA subunit 1;
AltName: Full=General transcription factor IIA subunit
1; AltName: Full=TFIIAL; AltName: Full=Transcription
initiation factor TFIIA 42 kDa subunit; Short=TFIIA-42;
Contains: RecName: Full=Transcription initiation factor
IIA alpha chain; AltName: Full=TFIIA p35 subunit;
Contains: RecName: Full=Transcription initiation factor
IIA beta chain; AltName: Full=TFIIA p19 subunit
gi|6721137|gb|AAF26776.1|AC010582_2 TFIIA-42 [Homo sapiens]
gi|433500|emb|CAA53151.1| TFIIA [Homo sapiens]
gi|452272|emb|CAA54442.1| TFIIA/alpha, p55 [Homo sapiens]
gi|727197|dbj|BAA03604.1| 'TFIIA-42' [Homo sapiens]
gi|76825402|gb|AAI07157.1| General transcription factor IIA, 1, 19/37kDa [Homo sapiens]
gi|76828070|gb|AAI07156.1| General transcription factor IIA, 1, 19/37kDa [Homo sapiens]
gi|119601740|gb|EAW81334.1| general transcription factor IIA, 1, 19/37kDa, isoform CRA_a
[Homo sapiens]
gi|167773425|gb|ABZ92147.1| general transcription factor IIA, 1, 19/37kDa [synthetic
construct]
gi|167773975|gb|ABZ92422.1| general transcription factor IIA, 1, 19/37kDa [synthetic
construct]
gi|261858774|dbj|BAI45909.1| general transcription factor IIA, 1, 19/37kDa [synthetic
construct]
gi|380784291|gb|AFE64021.1| transcription initiation factor IIA subunit 1 isoform 1 [Macaca
mulatta]
gi|383408289|gb|AFH27358.1| transcription initiation factor IIA subunit 1 isoform 1 [Macaca
mulatta]
gi|384943596|gb|AFI35403.1| transcription initiation factor IIA subunit 1 isoform 1 [Macaca
mulatta]
Length = 376
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 13 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 56
>gi|344273615|ref|XP_003408616.1| PREDICTED: transcription initiation factor IIA subunit 1
[Loxodonta africana]
Length = 370
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 7 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 50
>gi|440468274|gb|ELQ37443.1| hypothetical protein OOU_Y34scaffold00594g28 [Magnaporthe oryzae
Y34]
gi|440486307|gb|ELQ66188.1| hypothetical protein OOW_P131scaffold00420g27 [Magnaporthe oryzae
P131]
Length = 406
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ + G VY ++I+ V+ R +F +NG GES +NELQ +W+ K+ G
Sbjct: 1 MSNAVVGTVYEQIIKGVMEASRTDFEDNGFGESEINELQQVWQQKLTTMGA 51
>gi|389632973|ref|XP_003714139.1| hypothetical protein MGG_01235 [Magnaporthe oryzae 70-15]
gi|351646472|gb|EHA54332.1| hypothetical protein MGG_01235 [Magnaporthe oryzae 70-15]
Length = 407
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ + G VY ++I+ V+ R +F +NG GES +NELQ +W+ K+ G
Sbjct: 1 MSNAVVGTVYEQIIKGVMEASRTDFEDNGFGESEINELQQVWQQKLTTMGA 51
>gi|427786209|gb|JAA58556.1| hypothetical protein [Rhipicephalus pulchellus]
Length = 312
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA + +Y VIEDVI+ V+D F++ G E L EL+ IWE K++++ I
Sbjct: 1 MAAAGVPKLYRSVIEDVINGVKDVFLDEGVDEQALLELRQIWEKKLLESKAI 52
>gi|426223693|ref|XP_004006009.1| PREDICTED: TFIIA-alpha and beta-like factor-like isoform 1 [Ovis
aries]
Length = 1170
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIID--RTSAPKQPAPGG 66
+Y VIEDVI VRD F G E VL +L+ +WE K++Q+ D R S
Sbjct: 711 LYRSVIEDVIEGVRDLFAEEGVEEQVLKDLKQLWETKVLQSKATEDFFRNSVH------- 763
Query: 67 PITPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ A ++ P
Sbjct: 764 --SPLFTLQLPHSLHQTLQSSAAALVIP 789
>gi|410962779|ref|XP_003987946.1| PREDICTED: transcription initiation factor IIA subunit 1 [Felis
catus]
Length = 349
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 4/56 (7%)
Query: 1 MATSATG----MVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA SA +Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 1 MANSANTNTVPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 56
>gi|431839183|gb|ELK01110.1| Transcription initiation factor IIA subunit 1 [Pteropus alecto]
Length = 373
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 11 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 54
>gi|355693485|gb|EHH28088.1| hypothetical protein EGK_18434, partial [Macaca mulatta]
gi|355778774|gb|EHH63810.1| hypothetical protein EGM_16856, partial [Macaca fascicularis]
Length = 365
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 2 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 45
>gi|301765872|ref|XP_002918356.1| PREDICTED: transcription initiation factor IIA subunit 1-like
[Ailuropoda melanoleuca]
Length = 376
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 13 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 56
>gi|426233748|ref|XP_004010876.1| PREDICTED: transcription initiation factor IIA subunit 1 [Ovis
aries]
gi|296482864|tpg|DAA24979.1| TPA: TFIIA alpha, p55-like [Bos taurus]
Length = 376
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 13 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 56
>gi|11559984|ref|NP_071544.1| transcription initiation factor IIA subunit 1 [Rattus norvegicus]
gi|67461589|sp|O08949.1|TF2AA_RAT RecName: Full=Transcription initiation factor IIA subunit 1;
AltName: Full=General transcription factor IIA subunit
1; Contains: RecName: Full=Transcription initiation
factor IIA alpha chain; AltName: Full=TFIIA p35
subunit; Contains: RecName: Full=Transcription
initiation factor IIA beta chain; AltName: Full=TFIIA
p19 subunit
gi|2149996|gb|AAB58716.1| TFIIA large subunit [Rattus norvegicus]
gi|149025305|gb|EDL81672.1| general transcription factor 2a, 1 [Rattus norvegicus]
Length = 377
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 4/56 (7%)
Query: 1 MATSATG----MVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA SA +Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 1 MANSANTNTVPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 56
>gi|417399907|gb|JAA46934.1| Putative transcription initiation factor iia subunit 1 isoform 3
[Desmodus rotundus]
Length = 376
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 13 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 56
>gi|325651976|ref|NP_001191770.1| TFIIA-alpha and beta-like factor [Callithrix jacchus]
Length = 478
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI +VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 10 LYRSVIEDVIERVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 62
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ A ++ P
Sbjct: 63 SPLFTLQLPHNLHQTLQSSAASLVIP 88
>gi|296215642|ref|XP_002754212.1| PREDICTED: transcription initiation factor IIA subunit 1 isoform
1 [Callithrix jacchus]
Length = 391
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 28 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 71
>gi|440907254|gb|ELR57419.1| Transcription initiation factor IIA subunit 1, partial [Bos
grunniens mutus]
Length = 366
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 3 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 46
>gi|281351391|gb|EFB26975.1| hypothetical protein PANDA_006799 [Ailuropoda melanoleuca]
Length = 366
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 3 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 46
>gi|226958572|ref|NP_113568.2| transcription initiation factor IIA subunit 1 isoform 1 [Mus
musculus]
gi|67462078|sp|Q99PM3.2|TF2AA_MOUSE RecName: Full=Transcription initiation factor IIA subunit 1;
AltName: Full=General transcription factor IIA subunit
1; Contains: RecName: Full=Transcription initiation
factor IIA alpha chain; AltName: Full=TFIIA p35
subunit; Contains: RecName: Full=Transcription
initiation factor IIA beta chain; AltName: Full=TFIIA
p19 subunit
gi|148687004|gb|EDL18951.1| general transcription factor II A, 1, isoform CRA_b [Mus
musculus]
Length = 378
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 4/56 (7%)
Query: 1 MATSATG----MVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA SA +Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 1 MANSANTNTVPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 56
>gi|119620598|gb|EAX00193.1| hCG2045898, isoform CRA_a [Homo sapiens]
Length = 453
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 10 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 62
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 63 SPLFTLQLPHSLHQTLQSSTASLVIP 88
>gi|325651934|ref|NP_001191755.1| TFIIA-alpha and beta-like factor [Pan troglodytes]
Length = 478
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 10 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 62
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 63 SPLFTLQLPHSLHQTLQSSTASLVIP 88
>gi|12313735|gb|AAG50431.1|AF250834_1 TFIIA alpha/beta [Mus musculus]
Length = 378
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 4/56 (7%)
Query: 1 MATSATG----MVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA SA +Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 1 MANSANTNTVPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 56
>gi|111598505|gb|AAH79909.1| Gtf2a1 protein [Mus musculus]
Length = 378
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 4/56 (7%)
Query: 1 MATSATG----MVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA SA +Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 1 MANSANTNTVPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 56
>gi|343962023|dbj|BAK62599.1| stonin-1 [Pan troglodytes]
Length = 478
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 10 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 62
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 63 SPLFTLQLPHSLHQTLQSSTASLVIP 88
>gi|195112756|ref|XP_002000938.1| GI22255 [Drosophila mojavensis]
gi|193917532|gb|EDW16399.1| GI22255 [Drosophila mojavensis]
Length = 381
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MATSATGM--VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA T + VY VIEDVI+ VRD F++ G E VL E++ IW K++ + +
Sbjct: 1 MALCQTSVLKVYHAVIEDVINNVRDAFLDEGVDEQVLQEMKQIWRNKLLASKAV 54
>gi|67969611|dbj|BAE01154.1| unnamed protein product [Macaca fascicularis]
gi|67969631|dbj|BAE01164.1| unnamed protein product [Macaca fascicularis]
gi|67971998|dbj|BAE02341.1| unnamed protein product [Macaca fascicularis]
Length = 478
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 10 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 62
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 63 SPLFTLQLPHSLHQTLQSATASLVIP 88
>gi|62898261|dbj|BAD97070.1| TFIIA-alpha/beta-like factor isoform 1 variant [Homo sapiens]
Length = 478
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 10 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 62
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 63 SPLFTLQLPHSLHQTLQSSTASLVIP 88
>gi|40555809|gb|AAH64585.1| GTF2A1L protein [Homo sapiens]
Length = 477
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 9 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 61
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 62 SPLFTLQLPHSLHQTLQSSTASLVIP 87
>gi|410954749|ref|XP_003984024.1| PREDICTED: TFIIA-alpha and beta-like factor-like isoform 2 [Felis
catus]
Length = 1182
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 53/115 (46%), Gaps = 13/115 (11%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIID--RTSAPKQPAPGG 66
+Y VIEDVI VRD F G E VL L+ +WE K++Q+ D R S
Sbjct: 714 LYRSVIEDVIEGVRDLFAEEGIEEQVLKVLKQLWETKVLQSKATEDFFRNSTH------- 766
Query: 67 PITPVHDLNVPYEGTEEYETPTAEILFPP-TPLQTPIQTPLPGSTPLPGSTPLPG 120
+P+ L +P + ++ TA ++ P PL + L S G T LPG
Sbjct: 767 --SPMFTLQLPNSLHQTLQSSTASLVIPAGRPLASFTTAELGASNSSAGFT-LPG 818
>gi|148687003|gb|EDL18950.1| general transcription factor II A, 1, isoform CRA_a [Mus
musculus]
Length = 368
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 3 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 46
>gi|5091688|gb|AAD39634.1|AF106857_1 TFIIA large subunit isoform ALF [Homo sapiens]
Length = 478
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 10 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 62
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 63 SPLFTLQLPHSLHQTLQSSTASLVIP 88
>gi|26787968|ref|NP_006863.2| TFIIA-alpha and beta-like factor isoform 1 [Homo sapiens]
gi|327478545|sp|Q9UNN4.2|TF2AY_HUMAN RecName: Full=TFIIA-alpha and beta-like factor; AltName:
Full=General transcription factor II A, 1-like factor
gi|19684124|gb|AAH25991.1| General transcription factor IIA, 1-like [Homo sapiens]
gi|119620599|gb|EAX00194.1| hCG2045898, isoform CRA_b [Homo sapiens]
gi|123981326|gb|ABM82492.1| TFIIA-alpha/beta-like factor [synthetic construct]
gi|123996161|gb|ABM85682.1| TFIIA-alpha/beta-like factor [synthetic construct]
Length = 478
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 10 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 62
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 63 SPLFTLQLPHSLHQTLQSSTASLVIP 88
>gi|38492543|pdb|1NVP|B Chain B, Human TfiiaTBPDNA COMPLEX
Length = 57
Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 3 TSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
T+ +Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 6 TNTVPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 55
>gi|426335512|ref|XP_004029264.1| PREDICTED: TFIIA-alpha and beta-like factor-like isoform 1
[Gorilla gorilla gorilla]
Length = 478
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 10 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 62
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 63 SPLFTLQLPHSLHQTLQSSTASLVIP 88
>gi|62858149|ref|NP_001016908.1| general transcription factor IIA, 1, 19/37kDa [Xenopus (Silurana)
tropicalis]
gi|89271946|emb|CAJ83726.1| general transcription factor IIA, 1 [Xenopus (Silurana)
tropicalis]
Length = 367
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Query: 1 MATSATG----MVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA SA +Y VIEDVI+ VR+ F++ G E VL EL+ +WE K++Q+ +
Sbjct: 1 MAASANANPVPKLYRSVIEDVINDVRELFLDEGVDEQVLMELKTLWESKLMQSKAV 56
>gi|195053674|ref|XP_001993751.1| GH19494 [Drosophila grimshawi]
gi|193895621|gb|EDV94487.1| GH19494 [Drosophila grimshawi]
Length = 369
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MATSATGM--VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA T + VY VIEDVI+ VRD F++ G E VL E++ +W K++ + +
Sbjct: 1 MALCQTSVLKVYHAVIEDVITNVRDAFLDEGVDEQVLQEMKQVWRNKLLASKAV 54
>gi|348574698|ref|XP_003473127.1| PREDICTED: TFIIA-alpha and beta-like factor-like isoform 1 [Cavia
porcellus]
Length = 476
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIID 54
+Y +IEDVI VRD F G E VLN+L+ +WE K++Q+ D
Sbjct: 10 LYKSIIEDVIEGVRDLFTEEGIEEHVLNDLKQLWETKVLQSKATED 55
>gi|325651941|ref|NP_001191758.1| TFIIA-alpha and beta-like factor [Pongo abelii]
Length = 478
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 10 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNRIQ------- 62
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 63 SPLFTLQLPHSLHQTLQSSTASLVIP 88
>gi|405970121|gb|EKC35053.1| Transcription initiation factor IIA subunit 1 [Crassostrea gigas]
Length = 251
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 29/41 (70%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQA 49
+Y V+EDVIS VR+ F++ G E VL EL+ +WE K+ Q+
Sbjct: 10 LYKTVVEDVISNVREAFLDEGVDEQVLQELKQLWENKLTQS 50
>gi|348506372|ref|XP_003440733.1| PREDICTED: transcription initiation factor IIA subunit 1-like
[Oreochromis niloticus]
Length = 375
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 4/56 (7%)
Query: 1 MATSATG----MVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA+SA +Y VI+DVIS+VR+ F++ G E VL EL+ +WE K++Q+ +
Sbjct: 1 MASSANSNPVPKLYKNVIDDVISEVRELFLDEGVDEQVLLELKTLWENKLLQSKAV 56
>gi|395508072|ref|XP_003758339.1| PREDICTED: TFIIA-alpha and beta-like factor [Sarcophilus
harrisii]
Length = 487
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI--IDRTSAPKQPAPGG 66
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ R S P
Sbjct: 11 LYRSVIEDVIEGVRELFTEEGIEEQVLKDLKQLWETKVMQSKATEGFFRNSHPG------ 64
Query: 67 PITPVHDLNVPYEGTEEYETPTAEILFP 94
P+ L +P+ + +T TA ++ P
Sbjct: 65 ---PLFTLQLPHNLHQTIQTSTASLVIP 89
>gi|332022952|gb|EGI63218.1| Transcription initiation factor IIA subunit 1 [Acromyrmex
echinatior]
Length = 373
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 MATSATGMV--YIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA S T ++ Y VIEDVIS VR+ F++ G E VL EL+ IWE K++ + +
Sbjct: 1 MALSQTSVLKLYNTVIEDVISGVRESFMDEGVDEQVLLELKQIWEGKLMASKAV 54
>gi|410954751|ref|XP_003984025.1| PREDICTED: TFIIA-alpha and beta-like factor-like isoform 3 [Felis
catus]
Length = 478
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 53/115 (46%), Gaps = 13/115 (11%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIID--RTSAPKQPAPGG 66
+Y VIEDVI VRD F G E VL L+ +WE K++Q+ D R S
Sbjct: 10 LYRSVIEDVIEGVRDLFAEEGIEEQVLKVLKQLWETKVLQSKATEDFFRNSTH------- 62
Query: 67 PITPVHDLNVPYEGTEEYETPTAEILFPP-TPLQTPIQTPLPGSTPLPGSTPLPG 120
+P+ L +P + ++ TA ++ P PL + L S G T LPG
Sbjct: 63 --SPMFTLQLPNSLHQTLQSSTASLVIPAGRPLASFTTAELGASNSSAGFT-LPG 114
>gi|325651986|ref|NP_001191774.1| TFIIA-alpha and beta-like factor [Equus caballus]
Length = 473
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIID--RTSAPKQPAPGG 66
+Y VIEDVI R F G E VL +L+ +WE K++Q+ D R S
Sbjct: 10 LYRSVIEDVIEGARHLFAEEGVEEQVLKDLKQLWETKVLQSKATEDFFRNSLH------- 62
Query: 67 PITPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++PTA ++ P
Sbjct: 63 --SPLFTLQLPHSLHQTLQSPTASLVIP 88
>gi|328872637|gb|EGG21004.1| transcription factor IIA [Dictyostelium fasciculatum]
Length = 298
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 30/44 (68%)
Query: 3 TSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKM 46
+ AT VY +I+DVI +R EF+N G +S++ ELQ +WE ++
Sbjct: 2 SGATSSVYRHIIDDVIRCIRVEFLNEGLDDSIIMELQNMWETRL 45
>gi|325652002|ref|NP_001191779.1| TFIIA-alpha and beta-like factor [Monodelphis domestica]
Length = 487
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI--IDRTSAPKQPAPGG 66
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ R S P
Sbjct: 10 LYRSVIEDVIEGVRELFTEEGIEEQVLKDLKQLWETKVMQSKATEGFFRNSHPG------ 63
Query: 67 PITPVHDLNVPYEGTEEYETPTAEILFP 94
P+ L +P+ + +T TA ++ P
Sbjct: 64 ---PLFTLQLPHNLHQTIQTSTASLVIP 88
>gi|312371630|gb|EFR19764.1| hypothetical protein AND_21836 [Anopheles darlingi]
Length = 1337
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 1 MATSATGM--VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMI 47
M+ S T + VY VI+DVIS VRD F++ G E VL EL+ IW K++
Sbjct: 1 MSLSQTSVLKVYQTVIDDVISGVRDAFLDEGVDEQVLQELKQIWTSKVL 49
>gi|347968941|ref|XP_311940.5| AGAP002958-PA [Anopheles gambiae str. PEST]
gi|333467770|gb|EAA07559.5| AGAP002958-PA [Anopheles gambiae str. PEST]
Length = 516
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 1 MATSATGM--VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSA 58
M+ S T + VY VI+DVI+ VRD F++ G E VL E++ +W K++ I +
Sbjct: 1 MSLSQTSVLKVYTTVIDDVIAGVRDAFLDEGVDEQVLQEMKQVWTSKLLACKAIESTPES 60
Query: 59 PKQPAPGG 66
Q A G
Sbjct: 61 QDQQAGGN 68
>gi|350296905|gb|EGZ77882.1| transcription factor IIA, alpha/beta subunit [Neurospora
tetrasperma FGSC 2509]
Length = 422
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 14/118 (11%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPK 60
M+ +A G VY +I +VI+ VR +F NG +SVL EL+ W+ K+ Q ++ P
Sbjct: 1 MSNAAVGTVYEHIINEVINAVRVDFEENGVDDSVLEELKKGWQHKLSQ----LNIAQFPW 56
Query: 61 QPAPGGP------ITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTP-LPGSTP 111
P P P +N T++ PTA QT Q+P LPG P
Sbjct: 57 DPKPEAPPPAQATQNTSSAVNAQAAATQQ---PTANYTQSTLSPQTAAQSPSLPGGQP 111
>gi|47938836|gb|AAH71528.1| General transcription factor IIA, 1 [Danio rerio]
Length = 369
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 4/56 (7%)
Query: 1 MATSATG----MVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA+SA +Y V+EDVI++VR+ F++ G E VL EL+ +WE K++Q+ +
Sbjct: 1 MASSANSSQVPKLYRSVMEDVIAEVRELFLDEGVDEQVLMELKTLWESKLMQSKAV 56
>gi|336464804|gb|EGO53044.1| hypothetical protein NEUTE1DRAFT_91976 [Neurospora tetrasperma FGSC
2508]
Length = 408
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 14/118 (11%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPK 60
M+ +A G VY +I +VI+ VR +F NG +SVL EL+ W+ K+ Q ++ P
Sbjct: 1 MSNAAVGTVYEHIINEVINAVRVDFEENGVDDSVLEELKKGWQHKLSQ----LNIAQFPW 56
Query: 61 QPAPGGP------ITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTP-LPGSTP 111
P P P +N T++ PTA QT Q+P LPG P
Sbjct: 57 DPKPEAPPPAQATQNTSSAVNAQAAATQQ---PTANYTQSTLSPQTAAQSPSLPGGQP 111
>gi|354474740|ref|XP_003499588.1| PREDICTED: TFIIA-alpha and beta-like factor isoform 1 [Cricetulus
griseus]
Length = 476
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIID 54
+Y VIEDVI VRD F G E VL +L+ +WE K++Q+ D
Sbjct: 10 LYRSVIEDVIEGVRDLFAEEGIEEQVLKDLKKLWETKVLQSKATED 55
>gi|47086725|ref|NP_997822.1| transcription initiation factor IIA subunit 1 [Danio rerio]
gi|29124431|gb|AAH48894.1| General transcription factor IIA, 1 [Danio rerio]
gi|182891266|gb|AAI64197.1| Gtf2a1 protein [Danio rerio]
Length = 369
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 4/56 (7%)
Query: 1 MATSATG----MVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA+SA +Y V+EDVI++VR+ F++ G E VL EL+ +WE K++Q+ +
Sbjct: 1 MASSANSNQVPKLYRSVMEDVIAEVRELFLDEGVDEQVLMELKTLWESKLMQSKAV 56
>gi|85116223|ref|XP_965018.1| hypothetical protein NCU02615 [Neurospora crassa OR74A]
gi|28926818|gb|EAA35782.1| predicted protein [Neurospora crassa OR74A]
gi|38567155|emb|CAE76449.1| related to transcription factor TFIIA-L [Neurospora crassa]
Length = 421
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 14/118 (11%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPK 60
M+ +A G VY +I +VI+ VR +F NG +SVL EL+ W+ K+ Q ++ P
Sbjct: 1 MSNAAVGTVYEHIINEVINAVRVDFEENGVDDSVLEELKKGWQHKLSQ----LNIAQFPW 56
Query: 61 QPAPGGP------ITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTP-LPGSTP 111
P P P +N T++ PTA QT Q+P LPG P
Sbjct: 57 DPKPEAPPPAQATQNTSSAVNAQAAATQQ---PTANYTQSTLSPQTAAQSPSLPGGQP 111
>gi|448103235|ref|XP_004199990.1| Piso0_002549 [Millerozyma farinosa CBS 7064]
gi|359381412|emb|CCE81871.1| Piso0_002549 [Millerozyma farinosa CBS 7064]
Length = 273
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI----IDRT 56
M+ + T +Y +IE+VIS R +F ++G ES L EL+ IW K+ Q V +
Sbjct: 1 MSNAETSKLYEAIIEEVISDSRQDFEDSGIDESTLTELRKIWCEKLSQTSVANFSWDEEQ 60
Query: 57 SAPKQPAPGGPITPVHD 73
+ P + GGP+ P+ D
Sbjct: 61 NIPGSYSLGGPVPPIPD 77
>gi|296482566|tpg|DAA24681.1| TPA: STON1-GTF2A1L protein [Bos taurus]
Length = 388
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIID--RTSAPKQPAPGG 66
+Y VIEDVI VRD F G E VL +L+ +WE K++Q+ D R S
Sbjct: 10 LYRSVIEDVIEGVRDLFAEEGVEEQVLKDLKQLWETKVLQSKATEDFFRNSVH------- 62
Query: 67 PITPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ A + P
Sbjct: 63 --SPLFTLQLPHSLHQTLQSSAASFVIP 88
>gi|392569631|gb|EIW62804.1| transcription factor IIA alpha/beta subunit [Trametes versicolor
FP-101664 SS1]
Length = 291
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 29/51 (56%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ +Y VI+DVIS ++ EF G E VL ELQ WE K+I + V
Sbjct: 1 MSNKIVPSIYRAVIDDVISNIKSEFDEYGVSEDVLAELQSKWEAKVIASHV 51
>gi|255721121|ref|XP_002545495.1| predicted protein [Candida tropicalis MYA-3404]
gi|240135984|gb|EER35537.1| predicted protein [Candida tropicalis MYA-3404]
Length = 268
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ + +Y VI+DVI+ R +F N+G ES L EL+ +W+ K+ AGV
Sbjct: 1 MSNIESSKLYESVIDDVINDSRQDFENSGIDESTLQELKKLWQEKLTLAGV 51
>gi|393220362|gb|EJD05848.1| hypothetical protein FOMMEDRAFT_79779, partial [Fomitiporia
mediterranea MF3/22]
Length = 823
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 92/196 (46%), Gaps = 39/196 (19%)
Query: 32 ESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEI 91
++V+ E + + M +Q ++ D + P APGG +EG TP ++
Sbjct: 362 DNVMTEARNLRNMIAVQTPLLGDENT-PLHTAPGG--------GTGFEGA----TPRHQV 408
Query: 92 LFPPTPLQTPI-QTPL-PGSTP---LPGSTPLPGSTPLPGTADNSTYNIPTGSSDYPTPA 146
F P PL TP Q L PG+TP PG+TPL TPL DN + N P+G+ A
Sbjct: 409 AFTPNPLATPARQDSLGPGATPRSEFPGATPL--RTPL---RDNLSLN-PSGA------A 456
Query: 147 SDSGGNTEAKSGNGRPSSYMPPPPSPWMN-PRPPLSVDVNVAYVEGRDEADRGTSHQPLT 205
S G + G G SS S +MN PRP + ++ V E +DE+ T+ P+
Sbjct: 457 SSVGDTPRERRGRGGMSSL----KSAFMNLPRPENNFELLVPEDEEQDES---TAAVPME 509
Query: 206 QDFFTMSAG-KRKRED 220
+D A KR RE+
Sbjct: 510 EDAAERDARLKRLREE 525
>gi|409080246|gb|EKM80606.1| hypothetical protein AGABI1DRAFT_83593, partial [Agaricus
bisporus var. burnettii JB137-S8]
Length = 325
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
+Y VI+DVI+ ++ EF G E VL ELQ WE K+I + V
Sbjct: 9 IYRTVIDDVIANIKSEFDEYGVSEEVLAELQSKWETKVIASHV 51
>gi|393217149|gb|EJD02638.1| transcription factor IIA, alpha/beta subunit [Fomitiporia
mediterranea MF3/22]
Length = 293
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ +Y +I+DVI+ ++ +F + G GE VL++LQ WE K+I + V
Sbjct: 1 MSNKIVPAIYRAIIDDVITNIKSDFDDFGVGEDVLSDLQSRWENKVIASHV 51
>gi|426197147|gb|EKV47074.1| hypothetical protein AGABI2DRAFT_192339 [Agaricus bisporus var.
bisporus H97]
Length = 325
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
+Y VI+DVI+ ++ EF G E VL ELQ WE K+I + V
Sbjct: 9 IYRTVIDDVIANIKSEFDEYGVSEEVLAELQSKWETKVIASHV 51
>gi|395503790|ref|XP_003756245.1| PREDICTED: transcription initiation factor IIA subunit 1
[Sarcophilus harrisii]
Length = 382
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y V+EDV++ VR+ F+++G E VL EL+ +WE K++Q+ +
Sbjct: 18 LYRSVMEDVLNDVREVFLDDGVDEQVLMELKTLWENKLMQSKAV 61
>gi|340924286|gb|EGS19189.1| transcription factor TFIIA-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 392
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ + G +Y +I+DVI+ VR +F NG E+VL L+ W+ K+ Q V
Sbjct: 1 MSNTQVGPIYDSIIQDVINAVRVDFEENGIDETVLETLKKTWQHKLSQLNV 51
>gi|336262854|ref|XP_003346209.1| hypothetical protein SMAC_05746 [Sordaria macrospora k-hell]
gi|380093538|emb|CCC08501.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 394
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ + G VY +I +VI+ VR +F NG +SVL EL+ W+ K+ Q V
Sbjct: 1 MSNNTVGTVYEHIINEVINAVRVDFEENGVDDSVLEELKKGWQHKLSQLNV 51
>gi|448099401|ref|XP_004199139.1| Piso0_002549 [Millerozyma farinosa CBS 7064]
gi|359380561|emb|CCE82802.1| Piso0_002549 [Millerozyma farinosa CBS 7064]
Length = 272
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ + T +Y +IE+VIS R +F ++G ES L+EL+ IW K+ Q V
Sbjct: 1 MSNAETSKLYEAIIEEVISDSRQDFEDSGIDESTLSELRKIWCEKLSQTSV 51
>gi|126282183|ref|XP_001366986.1| PREDICTED: transcription initiation factor IIA subunit 1-like
[Monodelphis domestica]
Length = 377
Score = 44.3 bits (103), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y V+EDV++ VR+ F+++G E VL EL+ +WE K++Q+ +
Sbjct: 13 LYRSVMEDVLNDVREVFLDDGVDEQVLMELKTLWENKLMQSKAV 56
>gi|432906525|ref|XP_004077573.1| PREDICTED: stonin-1-like [Oryzias latipes]
Length = 1077
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 33/50 (66%)
Query: 5 ATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIID 54
+Y+ +I+DVI +++ F++ G + VL++L+ +WE K++Q+ I D
Sbjct: 650 CQAKLYLSIIDDVIDSMKELFLDEGIEDRVLDDLRHLWESKVLQSKAIDD 699
>gi|400601848|gb|EJP69473.1| transcription factor IIA [Beauveria bassiana ARSEF 2860]
Length = 358
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ A G VY +I +VI R +F +G ESVL EL+ +W+ K+ Q V
Sbjct: 1 MSNQAVGNVYQTIINEVIDGSRVDFDESGVEESVLEELRQVWQQKLTQLDV 51
>gi|380487602|emb|CCF37932.1| transcription factor IIA [Colletotrichum higginsianum]
Length = 380
Score = 43.9 bits (102), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQ 48
M+ +A G+VY ++I +VIS R +F G ESVL EL+ W+ K+ Q
Sbjct: 1 MSNNAVGVVYEQIINEVISSSRVDFEEGGVDESVLEELKKGWQEKLSQ 48
>gi|367052443|ref|XP_003656600.1| hypothetical protein THITE_2121465 [Thielavia terrestris NRRL
8126]
gi|347003865|gb|AEO70264.1| hypothetical protein THITE_2121465 [Thielavia terrestris NRRL
8126]
Length = 392
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ +A G VY +I +VI+ VR +F NG E VL +L+ W+ K+ Q V
Sbjct: 1 MSNAAVGPVYDSIITEVINSVRVDFEENGVDEGVLEDLKKRWQAKLSQMKV 51
>gi|47199173|emb|CAF89243.1| unnamed protein product [Tetraodon nigroviridis]
Length = 256
Score = 43.5 bits (101), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 31/45 (68%)
Query: 10 YIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIID 54
Y +I+DVI +R+ F++ G + ++++L+ +WE KM+Q+ + D
Sbjct: 4 YFSIIDDVIESIRELFLDEGLEDRLVDDLRHLWESKMMQSKAMED 48
>gi|358391042|gb|EHK40447.1| hypothetical protein TRIATDRAFT_296407 [Trichoderma atroviride IMI
206040]
Length = 372
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 57/130 (43%), Gaps = 28/130 (21%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPK 60
M+ A G VY +IE+VI+ R +F +G E+VL EL+ W+ K+ Q +D P
Sbjct: 1 MSNQAVGGVYQTIIEEVINSSRVDFEESGVEEAVLEELRLGWQQKLSQ----LDVARFPW 56
Query: 61 QPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPG 120
P P E PTA + PP TP+ T +TPL LP
Sbjct: 57 DPKP------------------EPAPPTASV--PPPNAATPVHTQAQFATPL----SLPT 92
Query: 121 STPLPGTADN 130
++P G N
Sbjct: 93 ASPPSGMLQN 102
>gi|116182054|ref|XP_001220876.1| hypothetical protein CHGG_01655 [Chaetomium globosum CBS 148.51]
gi|88185952|gb|EAQ93420.1| hypothetical protein CHGG_01655 [Chaetomium globosum CBS 148.51]
Length = 386
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQ 48
M+ +A G VY +I +V++ VR +F NG E L +L+ W+ K+ Q
Sbjct: 1 MSNAAVGHVYDTIIAEVVNAVRVDFEENGVDEGALEDLKKTWQHKLTQ 48
>gi|395323340|gb|EJF55815.1| TFIIA-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 408
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 60/132 (45%), Gaps = 11/132 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI-IDRTSAPKQPAPGGP 67
+Y VI+DVI+ ++ EF + G E VL ELQ WE K+I + V + + P PAP
Sbjct: 21 IYRAVIDDVIANIKPEFDDFGVSEEVLAELQSKWEAKVIASHVADFEPPAPPPAPAPAHT 80
Query: 68 ITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGSTPLPGT 127
P H ++ G + P PP P+Q Q P + P+ G L G
Sbjct: 81 AYPPHPMHTMQHG---HYPPHTAYAPPPHPMQVATQ-------PHVKTEPMDGRYVLSGP 130
Query: 128 ADNSTYNIPTGS 139
+ Y IPT S
Sbjct: 131 QSMAQYGIPTLS 142
>gi|440636245|gb|ELR06164.1| hypothetical protein GMDG_07819 [Geomyces destructans 20631-21]
Length = 337
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKM 46
M+ G VY ++I DV+ R +F G ESVL+EL +W+ K+
Sbjct: 1 MSNQTVGAVYQQIIRDVVDSSRVDFEEGGVDESVLDELSRVWQQKL 46
>gi|302409934|ref|XP_003002801.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|261358834|gb|EEY21262.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
Length = 416
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQ 48
M+ + G VY +VIEDVIS R +F G + VL EL+ W+ K+ Q
Sbjct: 1 MSNNVVGNVYQQVIEDVISASRVDFEEGGVEDGVLEELKRGWQQKLSQ 48
>gi|453086494|gb|EMF14536.1| transcription factor IIA, alpha/beta subunit [Mycosphaerella
populorum SO2202]
Length = 423
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M + G VY++VIE+V++ + +F +G G L ELQ W+ K+ GV
Sbjct: 1 MTNTLVGDVYLKVIEEVVAASQGDFEESGVGSQTLGELQQEWQNKLSARGV 51
>gi|50548421|ref|XP_501680.1| YALI0C10472p [Yarrowia lipolytica]
gi|49647547|emb|CAG81987.1| YALI0C10472p [Yarrowia lipolytica CLIB122]
Length = 249
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKM 46
M+ G +Y +VI+ VI++ RD+F NG E L EL+ W+ K+
Sbjct: 1 MSNQVVGNIYQKVIDAVINECRDDFQENGIDEMTLQELKEGWQTKL 46
>gi|313217045|emb|CBY38232.1| unnamed protein product [Oikopleura dioica]
Length = 339
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
M + +Y V+E+VISKVR+ ++ G ESVL +L+ +W K+ ++ +
Sbjct: 6 MVPNPVPRLYESVVEEVISKVRESVLDEGLDESVLCDLKALWTKKLEESKAM 57
>gi|302679224|ref|XP_003029294.1| hypothetical protein SCHCODRAFT_111312 [Schizophyllum commune
H4-8]
gi|300102984|gb|EFI94391.1| hypothetical protein SCHCODRAFT_111312, partial [Schizophyllum
commune H4-8]
Length = 358
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
+Y VI+DVI+ ++ EF G + VL++LQ WE K+I + V
Sbjct: 32 IYRTVIDDVIANIKPEFDEYGVTQEVLDQLQDKWEQKVINSRV 74
>gi|456370767|gb|EMF49663.1| hypothetical protein SPJ2_0483 [Streptococcus parauberis KRS-02109]
Length = 220
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 99/250 (39%), Gaps = 51/250 (20%)
Query: 32 ESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEI 91
+S+L I + + V D T+ QP G +TP D + P GT+
Sbjct: 3 KSLLISSMAIATILLGGTTVSADVTAGTTQPGTG-VVTPGTDTSTPTPGTDTST------ 55
Query: 92 LFPPTPLQTPIQTPLPG---STPLPGS---TPLPGSTPLPGTADNSTYNIPTGSSDYPTP 145
PTP T TP PG STP PG+ TP PG+TP GT N+ P P
Sbjct: 56 ---PTP-GTDTSTPTPGTDTSTPTPGTDTNTPNPGTTP--GTDTNT-----------PNP 98
Query: 146 ASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLT 205
+ G +T + P + P SP M P P VD+ G ++ G +T
Sbjct: 99 GTTPGTDTNTPNPGTTPGTSSNTPTSPIMTPTPEAPVDL------GNNKVITG-----IT 147
Query: 206 QDFFTMSAGKRK--REDFPAQYHNGGYNIPQQDG-------AGDAMSEIFELEVRFLSPL 256
T+S G K E + + Y + +D GD+ + IF++ + LS
Sbjct: 148 NGVATLSDGSSKTLTELGAKENSDNTYTVKTKDNKLVTLPHTGDSKNTIFKI-LGLLSAF 206
Query: 257 LIYALLYFSK 266
L + SK
Sbjct: 207 ASMVLAFKSK 216
>gi|345571083|gb|EGX53898.1| hypothetical protein AOL_s00004g557 [Arthrobotrys oligospora ATCC
24927]
Length = 781
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 20/103 (19%)
Query: 34 VLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPITPVHDLNVPYEGTEEYE--TPTAEI 91
+ NE++ I + Q+ ++ GG TP+H+ +GT +E TP
Sbjct: 374 IANEIRNIRALTETQSSLL------------GGENTPLHE----GKGTTGFEGMTPRRSA 417
Query: 92 LFPPTPLQTPIQTPLPGSTPLPGSTPLPGSTPLPGTADNSTYN 134
+ P P+ TP++ +PG+TPL + LPG TPL DN N
Sbjct: 418 IVTPNPMATPMRPGMPGATPL--HSGLPGQTPLRTPRDNLAIN 458
>gi|310790026|gb|EFQ25559.1| transcription factor IIA [Glomerella graminicola M1.001]
Length = 375
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ +A G VY ++I +VI+ R +F G ESVL+EL+ W+ K+ Q V
Sbjct: 1 MSNNAVGAVYEQIIAEVINSSRVDFEEGGVDESVLDELKKGWQEKLSQLEV 51
>gi|408395922|gb|EKJ75093.1| hypothetical protein FPSE_04713 [Fusarium pseudograminearum
CS3096]
Length = 410
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ A G VY +I++V++ R +F +G ESVL EL+ W+ K+ Q V
Sbjct: 1 MSNQAVGSVYKAIIDEVVNSSRVDFEESGVEESVLEELRQGWQQKLTQLDV 51
>gi|302927465|ref|XP_003054504.1| hypothetical protein NECHADRAFT_75297 [Nectria haematococca mpVI
77-13-4]
gi|256735445|gb|EEU48791.1| hypothetical protein NECHADRAFT_75297 [Nectria haematococca mpVI
77-13-4]
Length = 395
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ A G VY +I++VI+ R +F +G ESVL EL+ W+ K+ Q V
Sbjct: 1 MSNQAVGNVYQTIIDEVINSSRVDFEESGIEESVLEELRQGWQRKLTQLDV 51
>gi|313225923|emb|CBY21066.1| unnamed protein product [Oikopleura dioica]
Length = 326
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
M + +Y V+E+VISKVR+ ++ G ESVL +L+ +W K+ ++ +
Sbjct: 6 MVPNPVPRLYESVVEEVISKVRESVLDEGLDESVLCDLKALWTKKLEESKAM 57
>gi|367018696|ref|XP_003658633.1| hypothetical protein MYCTH_2294640 [Myceliophthora thermophila
ATCC 42464]
gi|347005900|gb|AEO53388.1| hypothetical protein MYCTH_2294640 [Myceliophthora thermophila
ATCC 42464]
Length = 400
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQ 48
M+ +A G VY +I +VI+ VR +F NG +S L +L+ W+ K+ Q
Sbjct: 1 MSNAAVGPVYDTIITEVINAVRVDFEENGVDDSALEDLKKTWQHKLSQ 48
>gi|449542726|gb|EMD33704.1| hypothetical protein CERSUDRAFT_117780 [Ceriporiopsis
subvermispora B]
Length = 300
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ ++Y VI+DVI+ ++ EF G E VL ELQ WE K++ + V
Sbjct: 1 MSNKIVPVIYRAVIDDVIASIKPEFDEYGISEEVLAELQHKWENKVMASHV 51
>gi|389741832|gb|EIM83020.1| transcription factor IIA alpha/beta subunit [Stereum hirsutum
FP-91666 SS1]
Length = 290
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ +Y VI+DVIS ++ +F G E VL +LQ WE K+I + V
Sbjct: 1 MSNKIVPAIYRAVIDDVISSIKSDFDEYGVSEEVLADLQQKWENKVIASHV 51
>gi|46107550|ref|XP_380834.1| hypothetical protein FG00658.1 [Gibberella zeae PH-1]
Length = 413
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ A G VY +I++V++ R +F +G ESVL EL+ W+ K+ Q V
Sbjct: 1 MSNQAVGGVYKAIIDEVVNSSRVDFEESGVEESVLEELRQGWQQKLTQLDV 51
>gi|322695934|gb|EFY87734.1| transcription factor TFIIA complex subunit Toa1, putative
[Metarhizium acridum CQMa 102]
Length = 363
Score = 40.8 bits (94), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ A G VY +I++VI+ R +F +G E+VL EL+ W+ K+ Q V
Sbjct: 1 MSNQAVGTVYQTIIDEVINSSRVDFEESGVEENVLEELRQGWQQKLSQLDV 51
>gi|392591717|gb|EIW81044.1| transcription factor IIA alpha beta subunit [Coniophora puteana
RWD-64-598 SS2]
Length = 300
Score = 40.4 bits (93), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
+Y VI++VI ++ EF G E VL ELQ WE K+I + V
Sbjct: 10 IYRTVIDEVIMAIKPEFDEYGVSEDVLAELQRKWENKVIASHV 52
>gi|322712087|gb|EFZ03660.1| transcription factor TFIIA complex subunit Toa1, putative
[Metarhizium anisopliae ARSEF 23]
Length = 357
Score = 40.4 bits (93), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ A G VY +I++VI+ R +F +G E+VL EL+ W+ K+ Q V
Sbjct: 1 MSNQAVGTVYQTIIDEVINSSRVDFEESGVEENVLEELRQGWQQKLSQLDV 51
>gi|347841660|emb|CCD56232.1| hypothetical protein [Botryotinia fuckeliana]
Length = 456
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVII 53
M+ + G VY ++I DV+ R +F +G E VL EL+ W+ K+ GV +
Sbjct: 1 MSNTQVGNVYQQIIADVVDSSRVDFEESGVDEVVLEELRKGWQTKLSTLGVAL 53
>gi|329115718|ref|ZP_08244435.1| LPXTG-motif cell wall anchor domain protein [Streptococcus
parauberis NCFD 2020]
gi|326906123|gb|EGE53037.1| LPXTG-motif cell wall anchor domain protein [Streptococcus
parauberis NCFD 2020]
Length = 246
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 107/258 (41%), Gaps = 41/258 (15%)
Query: 32 ESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPITPVHDLNVPYEGTEEYETPT-AE 90
+S+L I + + V D T+ QP G +TP D + P GT+ TPT
Sbjct: 3 KSLLISSMAIATILLGGTTVSADVTAGTTQPG-TGVVTPGTDTSTPTPGTD-TSTPTPGT 60
Query: 91 ILFPPTPLQTPIQTPLPGS---TPLPGSTP-------LPGSTPLPGTADNSTYN---IPT 137
PTP T TP PG+ TP PG+TP PG+T PGT D +T N P
Sbjct: 61 DTSTPTP-GTDTSTPTPGTDTNTPNPGTTPGTDTNTPNPGTT--PGT-DTNTPNPGTTPG 116
Query: 138 GSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPRPPLSVDVNVAYVEGRDEADR 197
++ P P + G +T + P + P SP M P P VD+ G ++
Sbjct: 117 TDTNTPNPGTTPGTDTNTPNPGTTPGASSNTPTSPIMTPTPEAPVDL------GNNKVIT 170
Query: 198 GTSHQPLTQDFFTMSAGKRK--REDFPAQYHNGGYNIPQQDG-------AGDAMSEIFEL 248
G +T T+S G K E + + Y + +D GD+ + IF++
Sbjct: 171 G-----ITNGVATLSDGSSKTLTELGAKENSDNTYTVKTKDNKLVTLPHTGDSKNTIFKI 225
Query: 249 EVRFLSPLLIYALLYFSK 266
+ LS L + SK
Sbjct: 226 -LGLLSAFASMVLAFKSK 242
>gi|406698650|gb|EKD01884.1| pre-mRNA splicing factor CEF1 (PRP19-associated complex protein 85)
[Trichosporon asahii var. asahii CBS 8904]
Length = 827
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 50/117 (42%), Gaps = 16/117 (13%)
Query: 57 SAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGS- 115
S+ + P G TP+H+ P G + TP TP P +TP G+
Sbjct: 390 SSVQTPLLGEENTPMHEEAAPGAG------------YSATPRHNVASTPNPLATPARGAM 437
Query: 116 -TP--LPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPP 169
TP LPG+TPL DN N P G+ TPA+D +A+ + +P P
Sbjct: 438 ATPRGLPGATPLRTPRDNLALNTPAGAGWGETPATDRRRMKDARRALKAGFASLPKP 494
>gi|156053762|ref|XP_001592807.1| hypothetical protein SS1G_05728 [Sclerotinia sclerotiorum 1980]
gi|154703509|gb|EDO03248.1| hypothetical protein SS1G_05728 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 475
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV-IIDRTSAP 59
M+ + G VY ++I DV+ R +F G E VL EL+ W+ K+ Q V + P
Sbjct: 1 MSNTQVGNVYQQIIADVVDSSRVDFEEGGVDEVVLEELRKGWQTKLSQLQVALFPWDPKP 60
Query: 60 KQPAPGGPITP 70
QP P+ P
Sbjct: 61 DQPMQNPPMVP 71
>gi|242778223|ref|XP_002479195.1| transcription factor TFIIA complex subunit Toa1, putative
[Talaromyces stipitatus ATCC 10500]
gi|218722814|gb|EED22232.1| transcription factor TFIIA complex subunit Toa1, putative
[Talaromyces stipitatus ATCC 10500]
Length = 374
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
MA G VY RVI++V R +F G + L E++ W+ K+ GV
Sbjct: 1 MANQQVGTVYDRVIQEVCEASRVDFEEGGVDQQTLEEMRRSWQQKLSSLGV 51
>gi|301769485|ref|XP_002920171.1| PREDICTED: mucin-5AC-like [Ailuropoda melanoleuca]
Length = 2878
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 87 PTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGSTPLPGTADNSTYNIPTGSSDYPTPA 146
P++ +L PL P PLP S PLP STPLP S PLP +A ST S PA
Sbjct: 1999 PSSTLLPSSAPL--PSSVPLPSSAPLPSSTPLPSSAPLPSSAAPSTRTCYCSVSGKLYPA 2056
>gi|212533489|ref|XP_002146901.1| transcription factor TFIIA complex subunit Toa1, putative
[Talaromyces marneffei ATCC 18224]
gi|210072265|gb|EEA26354.1| transcription factor TFIIA complex subunit Toa1, putative
[Talaromyces marneffei ATCC 18224]
Length = 366
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
MA G VY RVI++V R +F G + L E++ W+ K+ GV
Sbjct: 1 MANQQVGTVYDRVIQEVCEASRVDFEEGGVDQQTLEEMRRSWQQKLSSLGV 51
>gi|160878988|ref|YP_001557956.1| redoxin domain-containing protein [Clostridium phytofermentans
ISDg]
gi|160427654|gb|ABX41217.1| Redoxin domain protein [Clostridium phytofermentans ISDg]
Length = 329
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Query: 95 PTPLQTPIQT--PLPGSTPLPGSTPLPGSTPLP 125
P P +TP+ T P+P STP P STP+P STP+P
Sbjct: 153 PVPTKTPVSTSTPVPTSTPFPTSTPVPTSTPVP 185
>gi|194769960|ref|XP_001967069.1| GF21853 [Drosophila ananassae]
gi|190622864|gb|EDV38388.1| GF21853 [Drosophila ananassae]
Length = 1618
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 94 PPTPLQTPIQTP----LPGSTPLPGSTPLPGSTPLPGTADN-STYNIPTGSSDYPTPASD 148
PP P PI P LPG T LP +PLPG LPG A S ++P G+S P+ AS
Sbjct: 1476 PPRPQTAPITAPAMASLPGVTSLPSVSPLPGVASLPGLASLPSAVSLPGGAS-LPSVASL 1534
Query: 149 SG 150
+G
Sbjct: 1535 AG 1536
>gi|402224091|gb|EJU04154.1| hypothetical protein DACRYDRAFT_20780 [Dacryopinax sp. DJM-731
SS1]
Length = 234
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ Y +I++VI+ ++ +F + G V+ ELQ WEMK++ + V
Sbjct: 1 MSNRIVPATYRNIIDEVIASIKTDFEDAGVENDVIQELQNRWEMKVVASRV 51
>gi|457095588|gb|EMG26059.1| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
[Streptococcus parauberis KRS-02083]
Length = 229
Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 97/256 (37%), Gaps = 54/256 (21%)
Query: 32 ESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEI 91
+S+L I M + V D T+ QP G +TP D + P GT+
Sbjct: 3 KSLLISSMAIATMLLGGTTVSADVTAGTTQPGTG-VVTPGTDTSTPTPGTD--------- 52
Query: 92 LFPPTPLQTPIQTPLPG---STPLPG---STPLPG---STPLPGTADNS--TYNIPTGSS 140
TP PG STP PG STP PG STP PGT N+ P +
Sbjct: 53 ----------TSTPTPGTDTSTPTPGTDTSTPTPGTDTSTPTPGTDTNTPNPGTTPGTDT 102
Query: 141 DYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPRPPLSVDV-NVAYVEGRDEADRGT 199
D P P + G +T + P + P SP M P P VD+ N + G
Sbjct: 103 DTPNPGTTPGTDTNTPNPGTTPGTSSNTPTSPIMTPTPEAPVDLENNKVITG-------- 154
Query: 200 SHQPLTQDFFTMSAGKRK--REDFPAQYHNGGYNIPQQDG-------AGDAMSEIFELEV 250
+T T+S G K E + + Y + +D GD+ + IF++
Sbjct: 155 ----ITNGVATLSDGSSKTLTELGAKENSDNTYTVKTKDNKLVTLPHTGDSKNTIFKI-F 209
Query: 251 RFLSPLLIYALLYFSK 266
LS L + SK
Sbjct: 210 GLLSAFASMVLAFKSK 225
>gi|21220728|ref|NP_626507.1| multidomain-containing protein family [Streptomyces coelicolor
A3(2)]
gi|6469244|emb|CAB61705.1| putative multi-domain regulatory protein [Streptomyces coelicolor
A3(2)]
Length = 1334
Score = 37.4 bits (85), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 19/25 (76%)
Query: 104 TPLPGSTPLPGSTPLPGSTPLPGTA 128
TP PG+ P PGSTP PG+ P PGTA
Sbjct: 417 TPAPGTAPAPGSTPAPGTVPAPGTA 441
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.312 0.133 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,484,635,125
Number of Sequences: 23463169
Number of extensions: 301376627
Number of successful extensions: 1616801
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2309
Number of HSP's successfully gapped in prelim test: 13945
Number of HSP's that attempted gapping in prelim test: 1403764
Number of HSP's gapped (non-prelim): 113727
length of query: 281
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 140
effective length of database: 9,050,888,538
effective search space: 1267124395320
effective search space used: 1267124395320
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 76 (33.9 bits)