BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023523
(281 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9USU9|TOA1_SCHPO Transcription initiation factor IIA large subunit
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=toa1 PE=1 SV=1
Length = 369
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ S G VY VI DVI+ R +F NG ++ L ELQ +W+ K++ V
Sbjct: 1 MSNSIVGEVYHHVILDVIANSRSDFEENGVDDATLRELQNLWQSKLVATDV 51
>sp|Q5RCU0|TF2AA_PONAB Transcription initiation factor IIA subunit 1 OS=Pongo abelii
GN=GTF2A1 PE=2 SV=1
Length = 376
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 13 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 56
>sp|P52655|TF2AA_HUMAN Transcription initiation factor IIA subunit 1 OS=Homo sapiens
GN=GTF2A1 PE=1 SV=1
Length = 376
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
+Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 13 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 56
>sp|O08949|TF2AA_RAT Transcription initiation factor IIA subunit 1 OS=Rattus
norvegicus GN=Gtf2a1 PE=2 SV=1
Length = 377
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 4/56 (7%)
Query: 1 MATSATG----MVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA SA +Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 1 MANSANTNTVPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 56
>sp|Q99PM3|TF2AA_MOUSE Transcription initiation factor IIA subunit 1 OS=Mus musculus
GN=Gtf2a1 PE=2 SV=2
Length = 378
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 4/56 (7%)
Query: 1 MATSATG----MVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA SA +Y VIEDVI+ VRD F+++G E VL EL+ +WE K++Q+ +
Sbjct: 1 MANSANTNTVPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 56
>sp|P52654|TF2AA_DROME Transcription initiation factor IIA subunit 1 OS=Drosophila
melanogaster GN=TfIIA-L PE=1 SV=2
Length = 366
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MATSATGM--VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVI 52
MA T + VY VIEDVI+ VRD F++ G E VL E++ +W K++ + +
Sbjct: 1 MALCQTSVLKVYHAVIEDVITNVRDAFLDEGVDEQVLQEMKQVWRNKLLASKAV 54
>sp|Q9UNN4|TF2AY_HUMAN TFIIA-alpha and beta-like factor OS=Homo sapiens GN=GTF2A1L PE=2
SV=2
Length = 478
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIIDRTSAPKQPAPGGPI 68
+Y VIEDVI VR+ F G E VL +L+ +WE K++Q+ D Q
Sbjct: 10 LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQ------- 62
Query: 69 TPVHDLNVPYEGTEEYETPTAEILFP 94
+P+ L +P+ + ++ TA ++ P
Sbjct: 63 SPLFTLQLPHSLHQTLQSSTASLVIP 88
>sp|Q8R4I4|TF2AY_MOUSE TFIIA-alpha and beta-like factor OS=Mus musculus GN=Gtf2a1l PE=2
SV=2
Length = 468
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 9 VYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGVIID 54
+Y VIEDVI VRD F G E VL +L+ +WE K++Q+ D
Sbjct: 10 LYQSVIEDVIEGVRDLFAEEGIEEQVLKDLKKLWETKVLQSKATED 55
>sp|P32773|TOA1_YEAST Transcription initiation factor IIA large subunit
OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=TOA1 PE=1 SV=1
Length = 286
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 1 MATSATGMVYIRVIEDVISKVRDEFVNNGPGESVLNELQGIWEMKMIQAGV 51
M+ + VY ++E V+++VR++F N G E L +L+ IW+ K+ + V
Sbjct: 1 MSNAEASRVYEIIVESVVNEVREDFENAGIDEQTLQDLKNIWQKKLTETKV 51
>sp|Q6A068|CDC5L_MOUSE Cell division cycle 5-like protein OS=Mus musculus GN=Cdc5l PE=1
SV=2
Length = 802
Score = 36.2 bits (82), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 19/95 (20%)
Query: 62 PAPGGPITPVHDLNVPYEGTEEYETPTAEILFPP-----TPLQTPIQ-----TPLPGSTP 111
P GG TP+H+ + + G TP +++ P TP +TP TP G+TP
Sbjct: 378 PLKGGLNTPLHESD--FSGV----TPQRQVVQTPNTVLSTPFRTPSNGAEGLTPRSGTTP 431
Query: 112 LPGSTPLPGSTPLPGTADNSTYNIPTGSSDYPTPA 146
P + PG TPL D N G +DY P+
Sbjct: 432 KPVTNATPGRTPL---RDKLNINPEDGMADYSDPS 463
>sp|O08837|CDC5L_RAT Cell division cycle 5-like protein OS=Rattus norvegicus GN=Cdc5l
PE=1 SV=2
Length = 802
Score = 36.2 bits (82), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 19/95 (20%)
Query: 62 PAPGGPITPVHDLNVPYEGTEEYETPTAEILFPP-----TPLQTPIQ-----TPLPGSTP 111
P GG TP+H+ + + G TP +++ P TP +TP TP G+TP
Sbjct: 378 PLKGGLNTPLHESD--FSGV----TPQRQVVQTPNTVLSTPFRTPSNGAEGLTPRSGTTP 431
Query: 112 LPGSTPLPGSTPLPGTADNSTYNIPTGSSDYPTPA 146
P + PG TPL D N G +DY P+
Sbjct: 432 KPVTNATPGRTPL---RDKLNINPEDGMADYSDPS 463
>sp|C3PH19|IF2_CORA7 Translation initiation factor IF-2 OS=Corynebacterium aurimucosum
(strain ATCC 700975 / DSM 44827 / CN-1) GN=infB PE=3
SV=1
Length = 905
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 95 PTPLQTPIQTPLPGSTPLPGSTPLPGSTPLPGTA---DNSTYNIPTGSSDYPTPAS 147
P+ P P PG P PG P PG+TP PG A N GS TP S
Sbjct: 92 PSAAPKPGAAPKPGGAPKPGGAPKPGATPKPGGAPKPGAQRKNTEKGSERAVTPRS 147
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.133 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,743,676
Number of Sequences: 539616
Number of extensions: 6871552
Number of successful extensions: 36318
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 1332
Number of HSP's that attempted gapping in prelim test: 25469
Number of HSP's gapped (non-prelim): 7120
length of query: 281
length of database: 191,569,459
effective HSP length: 116
effective length of query: 165
effective length of database: 128,974,003
effective search space: 21280710495
effective search space used: 21280710495
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)