BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023524
         (281 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2QHK|A Chain A, Crystal Structure Of Methyl-Accepting Chemotaxis Protein
           From Vibrio Parahaemolyticus Rimd 2210633
          Length = 174

 Score = 30.4 bits (67), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 225 LQGWDYMESMGTYYQDMDRLVALEKGLRT 253
           LQ WD++   G Y  D+D+ VA ++ LRT
Sbjct: 138 LQKWDWVLGTGIYIDDIDQQVAXQRELRT 166


>pdb|2PNT|A Chain A, Crystal Structure Of The Pdz Domain Of Human Grasp (Grp1)
           In Complex With The C-Terminal Peptide Of The
           Metabotropic Glutamate Receptor Type 1
 pdb|2PNT|B Chain B, Crystal Structure Of The Pdz Domain Of Human Grasp (Grp1)
           In Complex With The C-Terminal Peptide Of The
           Metabotropic Glutamate Receptor Type 1
          Length = 98

 Score = 30.0 bits (66), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 12/89 (13%)

Query: 117 LVKMKGKTVMFVGDSLGLNQWE-------SLICMIHAAAPRTRTHMTRGDPLSTFKFLDY 169
           L K   +T  F   + GL+  E       + +C +H ++P     +T GD +++      
Sbjct: 10  LEKEDNQTFGFEIQTYGLHHREEQRVEMVTFVCRVHESSPAQLAGLTPGDTIASVN---- 65

Query: 170 GISVSFYRAPYLVDIDVVHGKRVLKLEDI 198
           G++V   R   +VDI    G  VL+LE +
Sbjct: 66  GLNVEGIRHREIVDIIKASGN-VLRLETL 93


>pdb|2Q8F|A Chain A, Structure Of Pyruvate Dehydrogenase Kinase Isoform 1
 pdb|2Q8G|A Chain A, Structure Of Pyruvate Dehydrogenase Kinase Isoform 1 In
           Complex With Glucose-Lowering Drug Azd7545
 pdb|2Q8H|A Chain A, Structure Of Pyruvate Dehydrogenase Kinase Isoform 1 In
           Complex With Dichloroacetate (Dca)
          Length = 407

 Score = 29.6 bits (65), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 8/67 (11%)

Query: 115 EFLVKMKGKTVMFVGDSLGLNQWESLICMIHAAAPRTRTHMTRGDPLSTFKFLDYGISVS 174
           +  VKM  +     G  + L + + L   +++ APR R   +R  PL+ F    YG+ +S
Sbjct: 282 DLTVKMSDR-----GGGVPLRKIDRLFNYMYSTAPRPRVETSRAVPLAGF---GYGLPIS 333

Query: 175 FYRAPYL 181
              A Y 
Sbjct: 334 RLYAQYF 340


>pdb|2HUF|A Chain A, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
           Aminotransferase
 pdb|2HUF|B Chain B, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
           Aminotransferase
 pdb|2HUI|A Chain A, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
           Aminotransferase In Complex With Glyoxylic Acid
 pdb|2HUI|B Chain B, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
           Aminotransferase In Complex With Glyoxylic Acid
 pdb|2HUU|A Chain A, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
           Aminotransferase In Complex With Alanine
 pdb|2HUU|B Chain B, Crystal Structure Of Aedes Aegypti Alanine Glyoxylate
           Aminotransferase In Complex With Alanine
          Length = 393

 Score = 28.1 bits (61), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 14/53 (26%), Positives = 23/53 (43%)

Query: 24  HTVSSAVIMGLXXXXXXXXXXXXPMLQANQSTCALFVGTWVRDDTYPMYQSPE 76
           HT+SS ++ GL            P L A    CA  +   ++D  + +Y  P+
Sbjct: 259 HTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDAGFELYADPK 311


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.447 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,727,420
Number of Sequences: 62578
Number of extensions: 369670
Number of successful extensions: 696
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 694
Number of HSP's gapped (non-prelim): 4
length of query: 281
length of database: 14,973,337
effective HSP length: 98
effective length of query: 183
effective length of database: 8,840,693
effective search space: 1617846819
effective search space used: 1617846819
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)