BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023524
         (281 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O74304|WIN1_SCHPO MAP kinase kinase kinase win1 OS=Schizosaccharomyces pombe (strain
           972 / ATCC 24843) GN=win1 PE=1 SV=1
          Length = 1436

 Score = 33.5 bits (75), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 4/67 (5%)

Query: 20  LVKPHTVSSAVIMGLRNH-HNNHNHHRRPMLQANQSTCALFVGTWVRDDTYPMY--QSPE 76
           L+ P T SS++ + ++N  H+N +H  RP LQ++ S+  +     +++D Y M+  +S  
Sbjct: 132 LLHPPTSSSSIPIPIKNAGHSNLDHPIRPSLQSSISSNRIIKSPGIKEDDY-MHRGRSIS 190

Query: 77  CPIIDSE 83
            P+ID E
Sbjct: 191 SPMIDVE 197


>sp|Q7Z6J2|GRASP_HUMAN General receptor for phosphoinositides 1-associated scaffold
           protein OS=Homo sapiens GN=GRASP PE=1 SV=1
          Length = 395

 Score = 33.1 bits (74), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 14/119 (11%)

Query: 99  YRWQPLNCQLPRFNGLEFLVKMKGKTVMFVGDSLGLNQWE-------SLICMIHAAAPRT 151
           +RW+ L+    +   +  L K   +T  F   + GL+  E       + +C +H ++P  
Sbjct: 86  FRWKNLSQSPEQQRKVLTLEKEDNQTFGFEIQTYGLHHREEQRVEMVTFVCRVHESSPAQ 145

Query: 152 RTHMTRGDPLSTFKFLDYGISVSFYRAPYLVDIDVVHGKRVLKLEDISGNG--KSWLNA 208
              +T GD +++      G++V   R   +VDI    G  VL+LE + G    K+ L A
Sbjct: 146 LAGLTPGDTIASVN----GLNVEGIRHREIVDIIKASGN-VLRLETLYGTSIRKAELEA 199


>sp|A2BGA0|RFX4_DANRE Transcription factor RFX4 OS=Danio rerio GN=rfx4 PE=2 SV=1
          Length = 735

 Score = 32.0 bits (71), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 203 KSWLNADVLSFNTGHWWSHEGSLQGWDYMESMGTYYQDMDRLVALEKGLRTWANWVDNNI 262
           + W N D+ S      ++ E S +  D    +   YQ+ DRL+  +  +  +  W+D+ +
Sbjct: 348 EDWRNVDLNSITKQTLYTMEDSRE--DQRRLIIQLYQEFDRLLEDQSPIEAYIEWLDSMV 405

Query: 263 DRSKTRV 269
           +R   RV
Sbjct: 406 ERCVVRV 412


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.137    0.449 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,999,974
Number of Sequences: 539616
Number of extensions: 4786444
Number of successful extensions: 10729
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 10727
Number of HSP's gapped (non-prelim): 5
length of query: 281
length of database: 191,569,459
effective HSP length: 116
effective length of query: 165
effective length of database: 128,974,003
effective search space: 21280710495
effective search space used: 21280710495
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)