BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023526
(281 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A7SGU6|PSMG2_NEMVE Proteasome assembly chaperone 2 OS=Nematostella vectensis GN=psmg2
PE=3 SV=1
Length = 244
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 117/239 (48%), Gaps = 31/239 (12%)
Query: 17 NLILPALSIGNVGQLAVDLLVSS--TGAETVGYLDDQFVLPCVGNDAYRP--SPRGDLAL 72
LILPA+SIGNVGQLA DL +SS + +GYL D +LP VGNDA+ +G+L L
Sbjct: 18 TLILPAVSIGNVGQLATDLTISSLSSSRHLIGYLHDASILPVVGNDAFARLGHEKGELNL 77
Query: 73 PLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRID 132
+ Y+S+ L ++QQR+P+ KG Y + L + K VV+LS++ R+D
Sbjct: 78 SAEVYQSTEKRLVIVQQRAPISKGHYANYCQKLLAWIKRCSFKQVVLLSSI--SATDRVD 135
Query: 133 MS-SGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAEGDVGDENNFTF 191
G + Y++++ ++L W +L++ K L G F
Sbjct: 136 AQLQGSPLRYMTTSVSQQLSSSFDKLSWVQLEKRPKFPDMTKESDELQFYLPGGGVTKRF 195
Query: 192 EDDLEEEDYYPSLPFAALFSCFKARGLKVTCLLCYCSEGDNMADAFNLADAACKFLRLN 250
D E+ED +P A L+ +CSEGDN+ADA +L FL LN
Sbjct: 196 FDRCEKED----VPLAV--------------LMTFCSEGDNIADAVSL------FLYLN 230
>sp|Q1LXS2|PSMG2_DANRE Proteasome assembly chaperone 2 OS=Danio rerio GN=psmg2 PE=2 SV=1
Length = 260
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 117/260 (45%), Gaps = 26/260 (10%)
Query: 17 NLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPR--GDLALPL 74
LILPA+S+GNVGQLAVDLL+S+ VGY ++P GN+ Y S L+
Sbjct: 16 TLILPAVSVGNVGQLAVDLLISTLNMPRVGYFHTDCLIPMAGNNPYASSTEDAAQLSTSA 75
Query: 75 QAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMS 134
+ Y L ++Q R+P+++ + + K + + +SG V+LS+ + +
Sbjct: 76 EVYSHRDLKLAVLQIRAPIIQTKVKSFRKLMISWMKSSGFLRTVLLSSAHAYQRDDQQLH 135
Query: 135 SGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAEGDVGDENNFTFEDD 194
P Y LS + E+LGW+ +++ + F D
Sbjct: 136 GTPLRYMLSPSLEKEERQRFEELGWREMEKI---------------------SVFPGISD 174
Query: 195 LEEEDYYPSLPFAA-LFSCFKARGLKVTCLLCYCSEGDNMADAFNLADAACKFLRLNPDN 253
E+ Y P L++ + + +L +CSEGDN+ DAF L + +L L
Sbjct: 175 SEQRLYIPGGGVTKCLYTDCCTEDVPMAVVLIFCSEGDNIPDAFALINCLNDWLHLLEKP 234
Query: 254 VRGDDGEKWIVPFSWMTVYG 273
+G +W VP SW ++G
Sbjct: 235 TQGS--VQWRVPPSWKLLFG 252
>sp|Q7SYV1|PSMG2_XENLA Proteasome assembly chaperone 2 OS=Xenopus laevis GN=psmg2 PE=2
SV=1
Length = 259
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 124/271 (45%), Gaps = 36/271 (13%)
Query: 14 SCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRG--DLA 71
S S L+LPA+S+GNVGQLA+DL++S+ VGY ++P VGN+ Y + +L
Sbjct: 13 SVSTLLLPAISVGNVGQLAIDLIISTLNIPKVGYFYTDCLVPMVGNNPYETNEENAKELC 72
Query: 72 LPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRI 131
+ Y S L ++Q RS V+K + + L + V+ LS+
Sbjct: 73 TNAEVYALPSQKLAVLQLRSLVIKKKSKSFRQALVSWIKRCAFARVIFLSSCHAYHRDDK 132
Query: 132 DMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAEGDVGDENNFTF 191
+ P Y ++ D +L WK +++ +SS E
Sbjct: 133 QLFGTPFRYLVTPALQKSVADVLSELEWKEMEK----------VSSYPE----------- 171
Query: 192 EDDLEEEDYYPSLPFAALF---SCFKARGLKVTCLLCYCSEGDNMADAFNLADAACKFLR 248
+D E++ + P F F C + L++ +L +CSEGDN+ DAF+L + ++L
Sbjct: 172 LNDNEKKLFIPGGGFTKAFYNDCCLE--DLQMAVVLKFCSEGDNVPDAFSLLNQVNEWLH 229
Query: 249 L-NPDNVRGDDGEKWIVPFSWMTVYG---PP 275
L P N GD KW P SW ++G PP
Sbjct: 230 LVEPTN--GD--VKWKSPRSWRLLFGSGLPP 256
>sp|Q869S8|PSMG2_DICDI Proteasome assembly chaperone 2 OS=Dictyostelium discoideum
GN=psmG2 PE=3 SV=1
Length = 269
Score = 94.4 bits (233), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 128/268 (47%), Gaps = 25/268 (9%)
Query: 18 LILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRP--SPRGDLALPLQ 75
LI P+L++GN+GQL +D+L+ S + +G++ D+ + P +GND + + G ++ ++
Sbjct: 22 LIWPSLTLGNIGQLTIDVLICSFEFKRIGFIVDENITPIIGNDCFTTLDNNNGIMSTSIE 81
Query: 76 AYESS-SSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMS 134
Y+SS +TL+QQRSP+V G + +++NL + A K ++ LS+ + + R+D
Sbjct: 82 VYQSSLFPSITLVQQRSPIVDGRIPNFSENLFKWINAEEIKEILFLSSSNANK--RVDSQ 139
Query: 135 -SGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAEGDVGDENNFTFED 193
+G Q+ ++ S +VD +L E N ++ S E + N T
Sbjct: 140 LTGSQVRFIKSDNVDKNI-------ISKLNEMNISEMELTVQSPEGET-IQLSNRLT--- 188
Query: 194 DLEEEDYYPSLPFAALFSCFKARGLKVTCLLCYCSEGDNMADAFNLADAACKFLRLNPDN 253
L +E Y + + CL +CSEG N +A +++ F++ N
Sbjct: 189 GLAKEIYST----INSKNNDNNNKVSFLCLNLFCSEGYNTNEALQMSNLIYNFIK----N 240
Query: 254 VRGDDGEKWIVPFSWMTVYGPPPDMSMF 281
+ P W + GP D S+F
Sbjct: 241 QESPSSPQLKTPSCWKLLQGPTFDQSLF 268
>sp|Q5XGC5|PSMG2_XENTR Proteasome assembly chaperone 2 OS=Xenopus tropicalis GN=psmg2 PE=2
SV=1
Length = 261
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 118/262 (45%), Gaps = 29/262 (11%)
Query: 17 NLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRG--DLALPL 74
L+LPA+S+GNVGQLA+DL++S+ VGY ++P VG++ Y +L
Sbjct: 16 TLLLPAISVGNVGQLAIDLIISTLKIPKVGYFYTDCLVPMVGSNPYETDEENAKELCTNA 75
Query: 75 QAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMS 134
+ Y S L ++Q RS V+K + + L + V++LS+ +
Sbjct: 76 EVYALPSQKLAVLQLRSLVIKKKSKSFRQALVSWIKRCAFARVILLSSCHAYHRDDTQLF 135
Query: 135 SGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAEGDVGDENNFTFEDD 194
P Y ++ D ++L WK +++ +++ +D
Sbjct: 136 GTPFRYLVTPALQKSVADVLKELEWKEMEKV---------------------SSYPGLND 174
Query: 195 LEEEDYYPSLPFAALF---SCFKARGLKVTCLLCYCSEGDNMADAFNLADAACKFLRLNP 251
E+ + P F F C + L++ +L +CSEGDN+ DAF+L + ++L L
Sbjct: 175 NEKRVFIPGGGFTKRFYDDCCLE--DLQMAVVLKFCSEGDNVPDAFSLLNQVNEWLHLVA 232
Query: 252 DNVRGDDGEKWIVPFSWMTVYG 273
+ GD KW P SW ++G
Sbjct: 233 -STNGDVLAKWKAPGSWQLLFG 253
>sp|Q969U7|PSMG2_HUMAN Proteasome assembly chaperone 2 OS=Homo sapiens GN=PSMG2 PE=1 SV=1
Length = 264
Score = 88.6 bits (218), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 126/271 (46%), Gaps = 37/271 (13%)
Query: 17 NLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSP--RGDLALPL 74
L++PA+S+GNVGQLA+DL++S+ +GY ++P VGN+ Y + +L++
Sbjct: 16 TLLMPAVSVGNVGQLAMDLIISTLNMSKIGYFYTDCLVPMVGNNPYATTEGNSTELSINA 75
Query: 75 QAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMS 134
+ Y S L +Q RS +K + + L + +SG V+VLS+ + + +
Sbjct: 76 EVYSLPSRKLVALQLRSIFIKYKSKPFCEKLLSWVKSSGCARVIVLSSSHSYQRNDLQLR 135
Query: 135 SGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYN--PAQRGWKYLSSLAEGDVGDENNFTFE 192
S P Y L+ + + + L W+ +++ P ++ + G + T
Sbjct: 136 STPFRYLLTPSMQKSVQNKIKSLNWEEMEKSRCIPEIDDSEFCIRIPGGGITK----TLY 191
Query: 193 DDLEEEDYYPSLPFAALFSCFKARGLKVTCLLCYCSEGDNMADAFNLADAACKFLR-LNP 251
D+ SC ++ +++ LL + SEGDN+ DA L + ++L+ L P
Sbjct: 192 DE----------------SC--SKEIQMAVLLKFVSEGDNIPDALGLVEYLNEWLQILKP 233
Query: 252 DNVRGDD----GEKWIVPFSWMTVYG---PP 275
DD +W +P SW ++G PP
Sbjct: 234 ---LSDDPTVSASRWKIPSSWRLLFGSGLPP 261
>sp|Q2NL24|PSMG2_BOVIN Proteasome assembly chaperone 2 OS=Bos taurus GN=PSMG2 PE=2 SV=1
Length = 264
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 115/265 (43%), Gaps = 32/265 (12%)
Query: 17 NLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPR--GDLALPL 74
L++PA+S+GNVGQLA+DL++S+ +GY ++P VGN+ Y + +L++
Sbjct: 16 TLLMPAVSVGNVGQLAIDLIISTLNMHKIGYFYTDCLVPMVGNNPYATAEENSAELSINA 75
Query: 75 QAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMS 134
+ Y S L +Q RS +K + + L + SG VVVLS+ + +
Sbjct: 76 EVYALPSKKLVALQLRSIFIKYKSKSFCEKLLSWVKCSGCAKVVVLSSSHSYHRNDLQLR 135
Query: 135 SGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAEGDVGDENNFTFEDD 194
S P Y L+ + + + L W+ + E P +
Sbjct: 136 STPFRYLLTPSMQKSVQNKIQSLNWEEM-EKTPCI-----------------------PE 171
Query: 195 LEEEDYYPSLPFAALFSCFKARG----LKVTCLLCYCSEGDNMADAFNLADAACKFLRLN 250
+++ ++ +P + G + + LL + SEGDN+ DA L + ++L++
Sbjct: 172 IDDSEFCVRVPGGGITKLLYDEGCSKEIPIAILLKFVSEGDNIPDALGLVEYLNEWLQII 231
Query: 251 PDNVRGDDGEK--WIVPFSWMTVYG 273
+ W +P SW ++G
Sbjct: 232 KPHCEDPTASSLPWKMPSSWRLLFG 256
>sp|Q9EST4|PSMG2_MOUSE Proteasome assembly chaperone 2 OS=Mus musculus GN=Psmg2 PE=2 SV=1
Length = 264
Score = 84.7 bits (208), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 123/272 (45%), Gaps = 39/272 (14%)
Query: 17 NLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPR--GDLALPL 74
L++PA+S+GNVGQLA+DL++S+ +GY ++P VGN+ Y +L++
Sbjct: 16 TLLMPAVSVGNVGQLAIDLIISTLNMCKIGYFYTDCLVPMVGNNPYATEEENSNELSINT 75
Query: 75 QAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMS 134
+ Y S L ++Q RS +K + + L + +SG ++VLS+ +
Sbjct: 76 EVYSLPSKKLVVLQLRSIFIKYKSKSFCEKLLAWVESSGCARIIVLSSSHSYHRNDAQLR 135
Query: 135 SGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYN--PAQRGWKYLSSLAEGDVGDENNFTFE 192
S P Y L+ + + L W +++ P ++ + G + T
Sbjct: 136 STPFRYLLTPCLQKSVQNKIKSLNWLEMEKSRCIPEMSDSEFCIRIPGGGITK----TLY 191
Query: 193 DDLEEEDYYPSLPFAALFSCFKARGLKVTCLLCYCSEGDNMADAFNLADAACKFLR-LNP 251
D+ SC ++ +++ LL + SEGDN+ DA +L + ++L+ + P
Sbjct: 192 DE----------------SC--SKEIQMAVLLKFVSEGDNIPDAVSLVEYLNEWLQIIKP 233
Query: 252 DNVRGDDGE-----KWIVPFSWMTVYG---PP 275
N DG W +P SW ++G PP
Sbjct: 234 CN----DGPMASALPWKIPSSWRLLFGSGLPP 261
>sp|P36040|POC2_YEAST Proteasome assembly chaperone 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=ADD66 PE=1 SV=1
Length = 267
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 111/276 (40%), Gaps = 41/276 (14%)
Query: 16 SNLILPALSIGNVGQLAVDLLVSSTGA--ETVGYLDDQFVLPCV--------GNDAYRPS 65
S L+LP +S+GN+ QL++D L++S E + LD ++++ V G+D+
Sbjct: 2 SCLVLPLVSVGNIPQLSIDWLLNSQANEWEYLEALDSKYLVEFVGPLDRPEDGSDSLYKD 61
Query: 66 PRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKN-----LADFAAASGNKHVVVL 120
+ L+ + + GL IQQR+P+V V Y N + F + + +
Sbjct: 62 ADMKYSSALEVFYNKKRGLFAIQQRTPLVS---VNYLNNFIVEIILPFLSKYNISEICIW 118
Query: 121 SALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLSSLAE 180
+L + + ++Y L DD E L L + W + +
Sbjct: 119 DSLYAMEDENGVIVRPQEVYSLGEFYF---DDEAELLSNLHLNDQESMVNNWLHFTPT-- 173
Query: 181 GDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFKARGLK-VTCLLCYCSEGDNMADA--F 237
+F+D + + + F L + + + L+ + C +EGDN D+ F
Sbjct: 174 ---------SFQDKISVDQPIFKILFQILNASQRPKALRSIKYCSCLANEGDNSLDSQQF 224
Query: 238 NLADAACKFLRLNPDNVRGDDGEKWIVPFSWMTVYG 273
+ K ++ P V K++ P SW YG
Sbjct: 225 LQWIISQKVIKNAPPIV------KFVRPISWQGAYG 254
>sp|O50302|CARB_GEOSE Carbamoyl-phosphate synthase pyrimidine-specific large chain
OS=Geobacillus stearothermophilus GN=pyrAB PE=3 SV=1
Length = 1064
Score = 33.9 bits (76), Expect = 1.2, Method: Composition-based stats.
Identities = 42/169 (24%), Positives = 72/169 (42%), Gaps = 20/169 (11%)
Query: 1 MEFVLEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGND 60
ME + G H +S + LS + ++ + + G VG L+ QFV+ G+D
Sbjct: 770 MEHIERAGVHSGDSIAVYPPQTLSDDVIAKITDYTVKLARGLHIVGLLNIQFVV--AGSD 827
Query: 61 AY--RPSPRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHV- 117
Y +PR +P + S +G+ + + + G LAD +G V
Sbjct: 828 VYVLEVNPRSSRTVP---FLSKITGVPMANLATKAILG------AKLADMGYETGVCPVR 878
Query: 118 ----VVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRL 162
V + F +L+ +D+S GP++ S+ V G D E+ +K L
Sbjct: 879 PGVYVKVPVFSFAKLRNVDISLGPEMK--STGEVIGKDVTFEKALYKGL 925
>sp|P46537|CARB_BACCL Carbamoyl-phosphate synthase pyrimidine-specific large chain
OS=Bacillus caldolyticus GN=pyrAB PE=3 SV=1
Length = 1065
Score = 33.9 bits (76), Expect = 1.5, Method: Composition-based stats.
Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 20/169 (11%)
Query: 1 MEFVLEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGND 60
ME + G H +S + LS + ++A + + G VG L+ QFV+ G+D
Sbjct: 770 MEHIERAGVHSGDSIAVYPPQTLSAEVIDKIADYTIRLARGLHIVGLLNIQFVVS--GSD 827
Query: 61 AY--RPSPRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHV- 117
Y +PR +P + S +G+ + + + G LA+ +G V
Sbjct: 828 VYVLEVNPRSSRTVP---FLSKITGVPMANLATKAILGT------KLAEMGYETGVCPVR 878
Query: 118 ----VVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRL 162
V + F +L+ +D+S GP++ S+ V G D E+ +K L
Sbjct: 879 PGVYVKVPVFSFAKLRNVDISLGPEMK--STGEVIGKDVTFEKALYKGL 925
>sp|Q9PHX2|HEM1_CAMJE Glutamyl-tRNA reductase OS=Campylobacter jejuni subsp. jejuni
serotype O:2 (strain NCTC 11168) GN=hemA PE=1 SV=1
Length = 432
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 85 TLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQ-RIDMSSGPQIYYLS 143
T I + S V + V AK LAD K VV+ A + G L + +++G ++ L+
Sbjct: 154 TQISKNSISVASVAVAKAKELADLT----QKKAVVIGAGEMGELAAKHLIAAGAKVIILN 209
Query: 144 STSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLS 176
+ D CE+LG L EY+ + KYL+
Sbjct: 210 R-DLQKAKDLCERLGV--LSEYDSLENLKKYLN 239
>sp|A1VYQ1|HEM1_CAMJJ Glutamyl-tRNA reductase OS=Campylobacter jejuni subsp. jejuni
serotype O:23/36 (strain 81-176) GN=hemA PE=3 SV=1
Length = 432
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 85 TLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQ-RIDMSSGPQIYYLS 143
T I + S V + V AK LAD K VV+ A + G L + +++G ++ L+
Sbjct: 154 TQISKNSISVASVAVAKAKELADLT----QKKAVVIGAGEMGELAAKHLIAAGAKVIILN 209
Query: 144 STSVDGTDDYCEQLGWKRLQEYNPAQRGWKYLS 176
+ D CE+LG L EY+ + KYL+
Sbjct: 210 R-DLQKAKDLCERLGV--LSEYDSLENLKKYLN 239
>sp|P25994|CARB_BACSU Carbamoyl-phosphate synthase pyrimidine-specific large chain
OS=Bacillus subtilis (strain 168) GN=pyrAB PE=3 SV=1
Length = 1071
Score = 33.1 bits (74), Expect = 2.1, Method: Composition-based stats.
Identities = 42/172 (24%), Positives = 73/172 (42%), Gaps = 26/172 (15%)
Query: 1 MEFVLEEGKHLSESCSNLILPALSI-----GNVGQLAVDLLVSSTGAETVGYLDDQFVLP 55
ME + G H +S + + P S+ + Q + L + G VG L+ QFVL
Sbjct: 770 MEHIERAGVHSGDSIA--VYPPQSLTEDIKKKIEQYTIAL---AKGLNIVGLLNIQFVLS 824
Query: 56 CVGNDAYRPSPRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASG-- 113
+PR +P + S +G+ + + ++ G + LA F G
Sbjct: 825 QGEVYVLEVNPRSSRTVP---FLSKITGIPMANLATKIILG------QKLAAFGYTEGLQ 875
Query: 114 -NKHVVVLSA--LDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRL 162
+ V + A F +L+R+D++ GP++ S+ V G D E+ +K L
Sbjct: 876 PEQQGVFVKAPVFSFAKLRRVDITLGPEMK--STGEVMGKDSTLEKALYKAL 925
>sp|Q4L5Q5|CARB_STAHJ Carbamoyl-phosphate synthase large chain OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=carB PE=3 SV=1
Length = 1057
Score = 33.1 bits (74), Expect = 2.3, Method: Composition-based stats.
Identities = 39/164 (23%), Positives = 67/164 (40%), Gaps = 10/164 (6%)
Query: 1 MEFVLEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGND 60
ME + G H +S + LS ++ L + + G VG ++ QFV+ G
Sbjct: 770 MEHIERAGVHSGDSIAVYPPQTLSQEDIDTLEDYTIKLAKGLNIVGLINIQFVIAHDGVY 829
Query: 61 AYRPSPRGDLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVL 120
+PR +P S +T IQ ++ +M K+L V +
Sbjct: 830 VLEVNPRASRTVPFL------SKITDIQMAQLAMQAIMGTRLKDLGYKQGVQPYSEGVFV 883
Query: 121 SA--LDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRL 162
A F +L+ +D++ GP++ S+ V G D E+ +K L
Sbjct: 884 KAPVFSFNKLKNVDVTLGPEMK--STGEVMGKDLTLEKALYKGL 925
>sp|A8FKW5|HEM1_CAMJ8 Glutamyl-tRNA reductase OS=Campylobacter jejuni subsp. jejuni
serotype O:6 (strain 81116 / NCTC 11828) GN=hemA PE=3
SV=1
Length = 432
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 90 RSPV-VKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQ-RIDMSSGPQIYYLSSTSV 147
++P+ V + V AK LAD A K VV+ A + G L + +++G ++ L+ +
Sbjct: 158 KNPISVASVAVAKAKELADLA----QKKAVVIGAGEMGELAAKHLIAAGAKVIILNR-DL 212
Query: 148 DGTDDYCEQLGWKRLQEYNPAQRGWKYLS 176
D CE+LG L EY+ + KYL+
Sbjct: 213 QKAKDLCERLGV--LSEYDSLENLKKYLN 239
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,012,969
Number of Sequences: 539616
Number of extensions: 4726238
Number of successful extensions: 10316
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 10289
Number of HSP's gapped (non-prelim): 24
length of query: 281
length of database: 191,569,459
effective HSP length: 116
effective length of query: 165
effective length of database: 128,974,003
effective search space: 21280710495
effective search space used: 21280710495
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)