Query 023526
Match_columns 281
No_of_seqs 134 out of 272
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 04:43:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023526.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023526hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3112 Uncharacterized conser 100.0 2.3E-61 4.9E-66 416.5 10.5 261 1-281 1-262 (262)
2 COG1938 Archaeal enzymes of AT 100.0 1.2E-31 2.5E-36 239.7 18.7 192 9-251 10-204 (244)
3 PF09754 PAC2: PAC2 family; I 100.0 1.5E-30 3.2E-35 230.5 12.1 189 18-250 1-194 (219)
4 TIGR00161 conserved hypothetic 100.0 4.2E-29 9.1E-34 225.3 18.9 189 9-251 10-201 (238)
5 COG2047 Uncharacterized protei 99.6 2.4E-14 5.1E-19 125.9 14.3 193 10-250 12-215 (258)
6 TIGR00162 conserved hypothetic 99.1 1.3E-09 2.9E-14 95.2 13.4 128 81-251 14-145 (188)
7 PF09754 PAC2: PAC2 family; I 59.1 1.1 2.4E-05 39.3 -2.8 37 208-245 182-219 (219)
8 PF01113 DapB_N: Dihydrodipico 54.6 27 0.00058 28.0 4.8 96 21-127 4-105 (124)
9 COG4273 Uncharacterized conser 52.7 14 0.00031 30.4 2.8 24 14-37 14-37 (135)
10 PF00056 Ldh_1_N: lactate/mala 50.2 98 0.0021 25.3 7.6 102 21-124 4-120 (141)
11 TIGR03649 ergot_EASG ergot alk 43.9 1.6E+02 0.0035 26.2 8.8 99 17-125 2-108 (285)
12 cd05313 NAD_bind_2_Glu_DH NAD( 41.2 47 0.001 30.5 4.7 38 11-51 34-71 (254)
13 PLN00106 malate dehydrogenase 41.1 2.2E+02 0.0047 27.0 9.3 107 16-126 20-139 (323)
14 cd05290 LDH_3 A subgroup of L- 38.2 1.9E+02 0.0041 27.1 8.4 102 21-125 3-122 (307)
15 PF00208 ELFV_dehydrog: Glutam 32.3 67 0.0015 29.1 4.2 37 12-51 29-65 (244)
16 PF08859 DGC: DGC domain; Int 32.1 29 0.00062 27.6 1.6 21 17-37 1-21 (110)
17 PLN02477 glutamate dehydrogena 31.8 74 0.0016 31.3 4.7 37 12-51 203-239 (410)
18 PF02633 Creatininase: Creatin 30.7 64 0.0014 28.7 3.8 31 95-125 81-111 (237)
19 PTZ00079 NADP-specific glutama 27.6 1E+02 0.0022 30.8 4.9 38 11-51 233-270 (454)
20 cd01076 NAD_bind_1_Glu_DH NAD( 27.5 97 0.0021 27.7 4.4 37 12-51 28-64 (227)
21 PF00388 PI-PLC-X: Phosphatidy 26.4 1.1E+02 0.0023 25.0 4.2 49 73-122 44-92 (146)
22 PF01073 3Beta_HSD: 3-beta hyd 26.1 2.5E+02 0.0055 25.6 7.0 104 24-127 5-121 (280)
23 PRK14030 glutamate dehydrogena 25.7 1.1E+02 0.0023 30.6 4.6 37 12-51 225-261 (445)
24 PF02826 2-Hacid_dh_C: D-isome 25.7 1E+02 0.0022 26.1 4.0 35 10-47 31-65 (178)
25 PF14542 Acetyltransf_CG: GCN5 25.3 2.3E+02 0.005 20.7 5.4 46 76-122 15-63 (78)
26 cd05293 LDH_1 A subgroup of L- 25.3 2.4E+02 0.0053 26.4 6.8 104 16-125 5-123 (312)
27 smart00846 Gp_dh_N Glyceraldeh 23.8 2.4E+02 0.0051 23.5 5.8 30 21-50 4-33 (149)
28 cd05211 NAD_bind_Glu_Leu_Phe_V 22.9 97 0.0021 27.5 3.5 37 12-51 20-56 (217)
29 PLN02272 glyceraldehyde-3-phos 22.7 1.7E+02 0.0037 28.9 5.4 101 18-122 86-207 (421)
30 PLN02602 lactate dehydrogenase 22.5 3.4E+02 0.0074 26.0 7.3 104 16-125 39-157 (350)
31 cd08557 PI-PLCc_bacteria_like 22.4 2.5E+02 0.0054 24.9 6.1 48 74-122 56-104 (271)
32 TIGR01599 PYST-A Plasmodium yo 22.3 28 0.0006 31.1 -0.2 53 72-127 97-149 (208)
33 cd04301 NAT_SF N-Acyltransfera 22.2 1.4E+02 0.0031 18.4 3.5 25 95-119 40-64 (65)
34 PRK08788 enoyl-CoA hydratase; 21.4 3.3E+02 0.0071 25.2 6.8 55 69-123 12-74 (287)
35 TIGR02886 spore_II_AA anti-sig 20.6 2.8E+02 0.006 20.8 5.3 39 81-119 6-44 (106)
36 PF04122 CW_binding_2: Putativ 20.2 56 0.0012 24.4 1.2 25 101-125 60-84 (92)
No 1
>KOG3112 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.3e-61 Score=416.52 Aligned_cols=261 Identities=30% Similarity=0.459 Sum_probs=237.1
Q ss_pred CceeeccCCccCCCCCEEEEcccCccchHHHHHHHHHhccCCcEEEEEecCCcccccccCCCCCCCCCCcceeeEeeeeC
Q 023526 1 MEFVLEEGKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLALPLQAYESS 80 (281)
Q Consensus 1 m~f~p~~~~~~~~~~~tLI~p~~s~GnVgqLA~DlLI~sl~~~~vG~l~s~~l~P~vg~~~~~~~~~~~l~tp~evY~~~ 80 (281)
|+|+...++.+|...+|+|+|+.++|||||||+||||.+.+|+||||+++++|.|+||+++|.+.+.+.++.++|||.+.
T Consensus 1 m~f~~~~~~~~~~~~~t~i~p~~~vgn~~qla~dlli~s~~~~rIGy~~~p~LiP~vGn~aY~~~p~~E~~~~~EvYe~~ 80 (262)
T KOG3112|consen 1 MLFLKDKRTTLDVAEHTVIIPSICVGNAAQLACDLLIASKELRRIGYITHPALIPVVGNSAYQHEPKEEKVSSCEVYEGT 80 (262)
T ss_pred CceecccCeeeccccceeEecceeeCcHHHHHHHHhhccccchhcccccCCceeeeecCCcCCCCCCcceeeceeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999988788899999999999
Q ss_pred CCcEEEEEEccCCCchhHHHHHHHHHHHHHHhCCCeEEEEeccCccccccccCCCCCeEEEEecCCCCCchhHHHhhCcc
Q 023526 81 SSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWK 160 (281)
Q Consensus 81 ~~~i~vlq~rspi~~~~~~~f~~~l~~wi~~~~~~~vi~Lss~~a~~r~~~~~~~~~~~~~~~s~~~~~~~~~~~~L~~~ 160 (281)
+.+++++|+|+|.+++....|+++|++|++++|.++||+|||++...|.+.+++.+|.+|+++++.++..+..+++|||.
T Consensus 81 s~kl~~~Q~RSp~vk~~~~~F~e~l~~~~kSSG~~~VIVLSss~~~~~~~L~~srgP~~Y~lsnae~~~~~~h~~~Lg~e 160 (262)
T KOG3112|consen 81 SDKLLVVQFRSPWVKRHTAHFQEELVELLKSSGARRVIVLSSSFGFEKRVLEESRGPWAYRLSNAEENFKEAHAAQLGNE 160 (262)
T ss_pred chhhHHHHhhhHHHHhhhhHHHHHHHHHHHhcCCceEEEEecchHHHhhhhhhccCCeeEEcCchhhhhHHHHHHHhCch
Confidence 99999999999999999999999999999999999999999999999999999999999999988888888999999998
Q ss_pred cccccCccccchhhhhhcccCCCCCCCCCCCcccccccccCCCCChHHHHHHHHhcCCceEEEEEEeccCCCHHHHHHHH
Q 023526 161 RLQEYNPAQRGWKYLSSLAEGDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFKARGLKVTCLLCYCSEGDNMADAFNLA 240 (281)
Q Consensus 161 ~~e~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lP~~~L~~~~~~~~i~~~~L~~f~~EGDN~~DA~~lA 240 (281)
++.++ .-||++.+-.. +-....++|+..||++++++++++.||++||+||||+|||..++
T Consensus 161 E~deg----Rcwke~~~Sve----------------e~aipggg~~~~Lf~af~~~~v~m~~Ll~y~sEGDNipdA~lLv 220 (262)
T KOG3112|consen 161 ELDEG----RCWKEHKGSVE----------------EDAIPGGGNALQLFKAFDEQKVPMMLLLRYLSEGDNIPDASLLV 220 (262)
T ss_pred hhhhc----cchhhhCCcce----------------eeecCCCccHHHHHHHHHhcCCchhhHHHHhhcCCCCchHHHHH
Confidence 87643 46888752211 11123366778899999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCCCC-CCCCcccCCccccccCCCCCCCCC
Q 023526 241 DAACKFLRLNPDNVRGD-DGEKWIVPFSWMTVYGPPPDMSMF 281 (281)
Q Consensus 241 ~~l~~~L~~~~~~~~~~-~~~~w~~P~SW~~lyG~~~~~~ly 281 (281)
+++|+|+++.++..++. ...+|++|.||+.+||++++..||
T Consensus 221 e~lnel~~~~~~l~~g~~~~~kw~IP~SW~llfG~~~~~~lF 262 (262)
T KOG3112|consen 221 EELNELCEDFLQLRNGGDGSFKWTIPKSWNLLFGNDVTELLF 262 (262)
T ss_pred HHHHHHHHhhhhhccCCCCcceEeccchHHHhcCCCCCcccC
Confidence 99999999977654332 456899999999999999999998
No 2
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=100.00 E-value=1.2e-31 Score=239.67 Aligned_cols=192 Identities=22% Similarity=0.321 Sum_probs=169.1
Q ss_pred CccCCCCCEEEEcccCccchHHHHHHHHHhccCCcEEEEEecCCcccccccCCCCCCCCCCcceeeEeeeeCCCcEEEEE
Q 023526 9 KHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLALPLQAYESSSSGLTLIQ 88 (281)
Q Consensus 9 ~~~~~~~~tLI~p~~s~GnVgqLA~DlLI~sl~~~~vG~l~s~~l~P~vg~~~~~~~~~~~l~tp~evY~~~~~~i~vlq 88 (281)
...+.++++||.+||++|+||.||++|||.+|+|+.||+++++++||++ .+ .+|.+.+|+|+|++ ++++++++
T Consensus 10 ~~~~~e~~ilI~g~PgiGlVG~Ia~~~li~~l~m~~iG~i~s~~~PPv~---vv---~~G~~~~P~RIY~~-~~~~~~~~ 82 (244)
T COG1938 10 EKVDYENPILIEGFPGIGLVGVIAGKHLIEELNMEEIGYIESKHIPPVA---VV---VEGRALPPFRIYAS-SDGVLALV 82 (244)
T ss_pred ccccccCCEEEEeCCCCchhhHHHHHHHHHHcCCeEEEEEEecCCCCEE---EE---eCCcccCceeEEec-CCCEEEEE
Confidence 3456789999999999999999999999999999999999999999998 44 36799999999999 89999999
Q ss_pred EccCCCchhHHHHHHHHHHHHHHhCCCeEEEEeccCccccccccCCCCCeEEEEecCCCCCchhHHHhhCcccccccCcc
Q 023526 89 QRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPA 168 (281)
Q Consensus 89 ~rspi~~~~~~~f~~~l~~wi~~~~~~~vi~Lss~~a~~r~~~~~~~~~~~~~~~s~~~~~~~~~~~~L~~~~~e~~~~~ 168 (281)
++.||++...++|+++|++|+.++|+++||+++|+++..+++ .+.+|+++++ ....+.+++++.+.++.
T Consensus 83 ~dv~I~p~~i~e~s~~v~~w~~~~~v~~ii~~~g~~~~~~~e-----~~~v~~va~~--~~~~~~l~~~~~~~~~~---- 151 (244)
T COG1938 83 SDVPIPPAVIYEISNAVVEWAEENGVEEVISLGGMPARLREE-----KPSVYGVATS--EEKLEKLKDLGAEPLEE---- 151 (244)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHcCCeEEEEecCCCcccccC-----CCceEEEecc--hhhhhHHhhcCCCcccc----
Confidence 999999999999999999999999999999999998877655 5789999986 44456677776555432
Q ss_pred ccchhhhhhcccCCCCCCCCCCCcccccccccCCCCChHHHHHHHHhcCCceEEEEEEeccCCCHHHHHHHHHH---HHH
Q 023526 169 QRGWKYLSSLAEGDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFKARGLKVTCLLCYCSEGDNMADAFNLADA---ACK 245 (281)
Q Consensus 169 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lP~~~L~~~~~~~~i~~~~L~~f~~EGDN~~DA~~lA~~---l~~ 245 (281)
+.+++|.|.|+.+|..++++..+|+.++. -.+||+.++|.. +|+
T Consensus 152 -------------------------------G~I~G~~g~ll~e~~~r~i~a~~ll~et~--~~~PDP~AAa~vve~lnk 198 (244)
T COG1938 152 -------------------------------GTIVGPSGALLNECLKRGIPALVLLAETF--GDRPDPRAAARVVEALNK 198 (244)
T ss_pred -------------------------------ceeecccHHHHHHHHHcCCCeEEEecccc--CCCCChHHHHHHHHHHHH
Confidence 23578899999999999999999999999 999999998885 788
Q ss_pred HhccCC
Q 023526 246 FLRLNP 251 (281)
Q Consensus 246 ~L~~~~ 251 (281)
++++.-
T Consensus 199 ~~~l~V 204 (244)
T COG1938 199 MLGLNV 204 (244)
T ss_pred HhcCcc
Confidence 888864
No 3
>PF09754 PAC2: PAC2 family; InterPro: IPR019151 This PAC2 (Proteasome assembly chaperone) family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 247 and 307 amino acids in length. These proteins function as a chaperone for the 26S proteasome, which is about 2000 kilodaltons (kDa) in molecular mass and contains one 20S core particle structure and two 19S regulatory caps. The 26S proteasome mediates ubiquitin-dependent proteolysis in eukaryotic cells. A number of studies including very recent ones have revealed that assembly of its 20S catalytic core particle is an ordered process that involves several conserved proteasome assembly chaperones (PACs). Two heterodimeric chaperones, PAC1-PAC2 and PAC3-PAC4, promote the assembly of rings composed of seven alpha subunits [, , , ].; PDB: 3MNF_A 2P90_B 3E35_A 3GAA_D 2WAM_C.
Probab=99.97 E-value=1.5e-30 Score=230.51 Aligned_cols=189 Identities=33% Similarity=0.460 Sum_probs=140.0
Q ss_pred EEEcccCccchHHHHHHHHHhccCCcEEEEEecCCcccccccCCCCCCCCC--CcceeeEeeeeCCCcEEEEEEccCCCc
Q 023526 18 LILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRG--DLALPLQAYESSSSGLTLIQQRSPVVK 95 (281)
Q Consensus 18 LI~p~~s~GnVgqLA~DlLI~sl~~~~vG~l~s~~l~P~vg~~~~~~~~~~--~l~tp~evY~~~~~~i~vlq~rspi~~ 95 (281)
||+|++|+|||||||+||||++|++++||++|++.+.|++|++++....+| .+.+|+|+|++++++++++|+|+|+++
T Consensus 1 li~g~~~~G~Vg~la~d~Li~~l~~~~vg~i~~~~~~P~~~~~p~~~~~~g~~~~~~~~~iy~~~~~~i~vl~~~~p~~~ 80 (219)
T PF09754_consen 1 LIEGFPGIGNVGQLAVDHLIESLNLEKVGYIDSDPLFPYVGPRPYVVVDDGSNILSPPLEIYYSEDSKILVLQGRSPIPP 80 (219)
T ss_dssp EEESSTBGGGHHHHHHHHHHHHSCEEEEEEE-HHHHSBTTTS--EEEEETTEEEEB-SEEEEEEECTTEEEEEESSE--S
T ss_pred CcCCccchhhHHHHHHHHHHHhCCCEEEEEEeccccCCCccCCCeEEeccccceeccceEEEEECCCCEEEEEecCCCCc
Confidence 799999999999999999999999999999999888888888776443345 899999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhCCCeEEEEeccCccccccccCCCCCeEEEEecCCCCCchhHHHhhCcccccccCccccchhhh
Q 023526 96 GMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPAQRGWKYL 175 (281)
Q Consensus 96 ~~~~~f~~~l~~wi~~~~~~~vi~Lss~~a~~r~~~~~~~~~~~~~~~s~~~~~~~~~~~~L~~~~~e~~~~~~~~~~~~ 175 (281)
...++|+++|++|+++.|+++||+|+|+++..+.+ .|.+|+.+++ ++..+.++..+....
T Consensus 81 ~~~~~f~~~l~~~~~~~g~~~vi~l~g~~~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~~~~~------------- 140 (219)
T PF09754_consen 81 GRWYEFAEELLDWIKSFGVKEVIVLGGLPAMEPHE-----RPPVYRVATS--EELLDKLEEAGIELS------------- 140 (219)
T ss_dssp CGHHHHHHHHHHHHHHTTECEEEEEEEEEESS-TT-----S-EEEEEESS--GGGHCHSHHTT-EE--------------
T ss_pred hHHHHHHHHHHHHHHHcCCCEEEEEeCCcCCCCcc-----ccceEEEEcC--HHHhhhhcccccccc-------------
Confidence 99999999999999999999999999999998763 3467777765 222233332111110
Q ss_pred hhcccCCCCCCCCCCCcccccccccCCCCChHHHHHHHHhcCCceEEEEEEeccCCCHHHHHHHHHH---HHHHhccC
Q 023526 176 SSLAEGDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFKARGLKVTCLLCYCSEGDNMADAFNLADA---ACKFLRLN 250 (281)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~lP~~~L~~~~~~~~i~~~~L~~f~~EGDN~~DA~~lA~~---l~~~L~~~ 250 (281)
..+.+.++.+.|+..+.+++++.++|+.++. ..++|+.+++.. |++.+++.
T Consensus 141 ----------------------~~~~~~g~~~~l~~~~~~~~i~~~~l~~~~~--~~~~d~~aA~~ll~~l~~~~~~~ 194 (219)
T PF09754_consen 141 ----------------------EEGIIVGPSGLLLNEAEERGIPAICLLAETP--GYLPDPRAAARLLEALSKLLGLK 194 (219)
T ss_dssp ----------------------SEEEE-HHHHHHHHHHHHTT-EEEEEEEEEE--GGGT-HHHHHHHHHHHHHHHT--
T ss_pred ----------------------cCCCccCchHHHHHHHHhCCCCceEEEeecC--CccCCHHHHHHHHHHHHHhhCce
Confidence 1112344456688888999999999999999 888888886654 45555553
No 4
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=99.97 E-value=4.2e-29 Score=225.29 Aligned_cols=189 Identities=14% Similarity=0.182 Sum_probs=154.9
Q ss_pred CccCCCCCEEEEcccCccchHHHHHHHHHhccCCcEEEEEecCCcccccccCCCCCCCCCCcceeeEeeeeCCCcEEEEE
Q 023526 9 KHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLALPLQAYESSSSGLTLIQ 88 (281)
Q Consensus 9 ~~~~~~~~tLI~p~~s~GnVgqLA~DlLI~sl~~~~vG~l~s~~l~P~vg~~~~~~~~~~~l~tp~evY~~~~~~i~vlq 88 (281)
+..++++++||.||+|+|+||+||+||||++|++++||+|+++++||++.. .+|...+|+|+|.+++. ++++|
T Consensus 10 ~~~~~~~~ilI~gfpg~G~VG~iA~~~Li~~l~~~~ig~I~s~~~pP~v~v------~~g~~~~p~riY~~~~~-~vv~~ 82 (238)
T TIGR00161 10 YKEDVENPIVIEGFPGVGLVGNIAGWLLIEDLKLREIGYIDSKYFPPLAVL------YKGVAIPPVRIYEGKDG-IVLFL 82 (238)
T ss_pred cCccCCCCEEEEeCCCCChHHHHHHHHHHHHcCCeEEEEEecCCCCCeEEe------cCCeecCceEEEecCCc-EEEEE
Confidence 346899999999999999999999999999999999999999999999954 25689999999997533 68999
Q ss_pred EccCCCchhHHHHHHHHHHHHHHhCCCeEEEEeccCccccccccCCCCCeEEEEecCCCCCchhHHHhhCcccccccCcc
Q 023526 89 QRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNPA 168 (281)
Q Consensus 89 ~rspi~~~~~~~f~~~l~~wi~~~~~~~vi~Lss~~a~~r~~~~~~~~~~~~~~~s~~~~~~~~~~~~L~~~~~e~~~~~ 168 (281)
+|.|+.+...++|+++|++|+++.|+++||+|+|+.+..+ .+++|+++++ ++..+.++.. ...+
T Consensus 83 ~~~~i~p~~~~~~a~~il~~~~~~gv~~Ii~Lgg~~~~~~-------~~~v~~~at~--~~~~~~l~~~-~~~~------ 146 (238)
T TIGR00161 83 SDFIIPPAVVYDMTNAIVEWMVRNNSRELISFNGMVVREK-------SQPVFGAANS--QELIERLKDL-IEIF------ 146 (238)
T ss_pred ecccCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCccCCCC-------CCcEEEEECC--HHHHHHHHHh-cCcC------
Confidence 9999999999999999999999999999999999998642 3678988875 3233333321 1111
Q ss_pred ccchhhhhhcccCCCCCCCCCCCcccccccccCCCCChHHHHHHHHhcCCceEEEEEEeccCCCHHHHHHHHHH---HHH
Q 023526 169 QRGWKYLSSLAEGDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFKARGLKVTCLLCYCSEGDNMADAFNLADA---ACK 245 (281)
Q Consensus 169 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lP~~~L~~~~~~~~i~~~~L~~f~~EGDN~~DA~~lA~~---l~~ 245 (281)
..+.+.++.+.|+..|..++++.+||+.++. ...||+.+++.. |++
T Consensus 147 -----------------------------~~g~i~G~~g~ll~~a~~~gi~~i~Ll~et~--~~~PDP~AA~~ll~~l~~ 195 (238)
T TIGR00161 147 -----------------------------PFGNLNGISGTLLTRCAVNDIPAICLLAETL--GPYPDPRAAASLVEVLNK 195 (238)
T ss_pred -----------------------------CCCEEechhHHHHHHHHHcCCCEEEEEEeCC--CCCCCHHHHHHHHHHHHH
Confidence 1123456677799999999999999999997 678999998775 677
Q ss_pred HhccCC
Q 023526 246 FLRLNP 251 (281)
Q Consensus 246 ~L~~~~ 251 (281)
++++.-
T Consensus 196 l~~~~i 201 (238)
T TIGR00161 196 MLNTNV 201 (238)
T ss_pred HhCCCc
Confidence 887754
No 5
>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]
Probab=99.59 E-value=2.4e-14 Score=125.94 Aligned_cols=193 Identities=19% Similarity=0.238 Sum_probs=137.5
Q ss_pred ccCCCCCEEEEcccCccchHHHHHHHHHhccCCcEEEEEecCCcccccccCCCCCCCCCCcc-eeeEeeeeCC----CcE
Q 023526 10 HLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLA-LPLQAYESSS----SGL 84 (281)
Q Consensus 10 ~~~~~~~tLI~p~~s~GnVgqLA~DlLI~sl~~~~vG~l~s~~l~P~vg~~~~~~~~~~~l~-tp~evY~~~~----~~i 84 (281)
.++++++.||.|.|++|+||.||+||||+.|+++++-.+.|+||||-|...+ ++.+. ..-|+|+-++ +++
T Consensus 12 ep~l~~PvlieGLPGIG~VGKLaAehlv~el~aeK~~el~S~yfPPQV~V~d-----D~~vel~~ne~Y~~k~~~~~~Dl 86 (258)
T COG2047 12 EPELENPVLIEGLPGIGHVGKLAAEHLVEELKAEKFAELFSPYFPPQVLVND-----DSTVELMRNEFYYWKSPGGERDL 86 (258)
T ss_pred ccccCCceeecCCCCcchHHHHHHHHHHHHhCceeehhhhccCCCCeeEecC-----CceEEeeeceeEEEecCCCCCcE
Confidence 4689999999999999999999999999999999999999999999774433 22322 3457887643 578
Q ss_pred EEEEEccC-CCchhHHHHHHHHHHHHHHhCCCeEEEEeccCccccccccCCCCCeEEEEecCCCCCchhHHHhhCccccc
Q 023526 85 TLIQQRSP-VVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQ 163 (281)
Q Consensus 85 ~vlq~rsp-i~~~~~~~f~~~l~~wi~~~~~~~vi~Lss~~a~~r~~~~~~~~~~~~~~~s~~~~~~~~~~~~L~~~~~e 163 (281)
+++--+.- .-+...++.+..+++++++.|.+.|..|+|.....-- ..|+|+.+.++ ..+-+.+++-|+.. +
T Consensus 87 iil~Gd~Q~~~~~gqyel~~~~Ld~a~e~g~~~IyTLGGy~vGkl~-----eep~VlGA~ts--~eLi~~lke~gV~f-r 158 (258)
T COG2047 87 IILVGDTQATSSEGQYELTGKILDIAKEFGARMIYTLGGYGVGKLV-----EEPRVLGAVTS--KELIEELKEHGVEF-R 158 (258)
T ss_pred EEEeccccccCcchhHHHHHHHHHHHHHcCCcEEEEecCcccCccc-----CCceeEEecCC--HHHHHHHHHcCeEe-c
Confidence 88876663 3445578899999999999999999999999877532 25888888765 44445555544311 1
Q ss_pred ccCccccchhhhhhcccCCCCCCCCCCCcccccccccCCCCC-hHHH-HHHHHhcCCceEEEEEEeccCCCHHHHHHHHH
Q 023526 164 EYNPAQRGWKYLSSLAEGDVGDENNFTFEDDLEEEDYYPSLP-FAAL-FSCFKARGLKVTCLLCYCSEGDNMADAFNLAD 241 (281)
Q Consensus 164 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lP-~~~L-~~~~~~~~i~~~~L~~f~~EGDN~~DA~~lA~ 241 (281)
+..| .+ .+- .++| +--..-++++.+||.-.++ .-.-||.++-.
T Consensus 159 ~~ep-------------------------------gG--gIVGasGLllg~g~l~gm~gaCLMGeT~--GY~vDpkaAka 203 (258)
T COG2047 159 SGEP-------------------------------GG--GIVGASGLLLGFGELRGMDGACLMGETP--GYLVDPKAAKA 203 (258)
T ss_pred cCCC-------------------------------CC--ceechhhhhhhhhhhcCCCceeeccCCC--ccccChHHHHH
Confidence 1100 00 111 2344 3334558999999999988 77888887444
Q ss_pred H---HHHHhccC
Q 023526 242 A---ACKFLRLN 250 (281)
Q Consensus 242 ~---l~~~L~~~ 250 (281)
. |.+.|++.
T Consensus 204 VL~vl~k~lgiE 215 (258)
T COG2047 204 VLEVLCKMLGIE 215 (258)
T ss_pred HHHHHHHHhCce
Confidence 3 55666664
No 6
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=99.12 E-value=1.3e-09 Score=95.24 Aligned_cols=128 Identities=18% Similarity=0.219 Sum_probs=95.9
Q ss_pred CCcEEEEEEcc-CCCchhHHHHHHHHHHHHHHhCCCeEEEEeccCccccccccCCCCCeEEEEecCCCCCchhHHHhhCc
Q 023526 81 SSGLTLIQQRS-PVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGW 159 (281)
Q Consensus 81 ~~~i~vlq~rs-pi~~~~~~~f~~~l~~wi~~~~~~~vi~Lss~~a~~r~~~~~~~~~~~~~~~s~~~~~~~~~~~~L~~ 159 (281)
+++++++.... |+.+...++|++++++|+++.|+++||.|+|+.+..+.+ .|.+|+.+++ ++..+.++..+.
T Consensus 14 ~~~illl~g~e~~~~p~~~~e~a~~vld~a~~~gv~~iitLgG~~~~~~~t-----rp~V~~~at~--~el~~~l~~~g~ 86 (188)
T TIGR00162 14 GTDLIILVGNTQSLSPEGQYELVNAIIDVAKKYGARMIYTLGGYGVGKLVE-----EPYVYGAATS--PELVEELKEHGV 86 (188)
T ss_pred CCCEEEEEcCCCCCChhhHHHHHHHHHHHHHHcCCCEEEEecCCcCCCCCC-----CCceEEEeCC--HHHHHHHHhcCC
Confidence 36899999999 777787889999999999999999999999998865432 3668988875 333333333221
Q ss_pred ccccccCccccchhhhhhcccCCCCCCCCCCCcccccccccCCCCChHHHHHHHHhcCCceEEEEEEeccCCCHHHHHHH
Q 023526 160 KRLQEYNPAQRGWKYLSSLAEGDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFKARGLKVTCLLCYCSEGDNMADAFNL 239 (281)
Q Consensus 160 ~~~e~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lP~~~L~~~~~~~~i~~~~L~~f~~EGDN~~DA~~l 239 (281)
... ...+.+.++.+.|+.+|.+++++.+||+..|. ...+|+.+.
T Consensus 87 ~~~----------------------------------~~~g~i~G~~glLl~~a~~~gi~ai~L~~e~p--~y~pDP~AA 130 (188)
T TIGR00162 87 KFR----------------------------------EPGGGIIGASGLLLGVSELEGIPGACLMGETP--GYMIDPKAA 130 (188)
T ss_pred eee----------------------------------cCCCccccHHHHHHHHHHHCCCCeEEEEEeCC--CCCCChHHH
Confidence 110 01123456677789999999999999999999 788999987
Q ss_pred HHH---HHHHhccCC
Q 023526 240 ADA---ACKFLRLNP 251 (281)
Q Consensus 240 A~~---l~~~L~~~~ 251 (281)
+.. |++++++.-
T Consensus 131 ~alL~~L~kllgl~v 145 (188)
T TIGR00162 131 KAVLEVLCKMLSLEV 145 (188)
T ss_pred HHHHHHHHHHHCCCC
Confidence 775 677887754
No 7
>PF09754 PAC2: PAC2 family; InterPro: IPR019151 This PAC2 (Proteasome assembly chaperone) family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 247 and 307 amino acids in length. These proteins function as a chaperone for the 26S proteasome, which is about 2000 kilodaltons (kDa) in molecular mass and contains one 20S core particle structure and two 19S regulatory caps. The 26S proteasome mediates ubiquitin-dependent proteolysis in eukaryotic cells. A number of studies including very recent ones have revealed that assembly of its 20S catalytic core particle is an ordered process that involves several conserved proteasome assembly chaperones (PACs). Two heterodimeric chaperones, PAC1-PAC2 and PAC3-PAC4, promote the assembly of rings composed of seven alpha subunits [, , , ].; PDB: 3MNF_A 2P90_B 3E35_A 3GAA_D 2WAM_C.
Probab=59.12 E-value=1.1 Score=39.27 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCceEE-EEEEeccCCCHHHHHHHHHHHHH
Q 023526 208 ALFSCFKARGLKVTC-LLCYCSEGDNMADAFNLADAACK 245 (281)
Q Consensus 208 ~L~~~~~~~~i~~~~-L~~f~~EGDN~~DA~~lA~~l~~ 245 (281)
.|++.+ ++.+++.+ +..++.||||+.|+..++++|.+
T Consensus 182 ~ll~~l-~~~~~~~id~~~l~~ead~~~e~~~~~~~l~e 219 (219)
T PF09754_consen 182 RLLEAL-SKLLGLKIDLSDLEEEADNIEEAEEMVEQLEE 219 (219)
T ss_dssp HHHHHH-HHHHT---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHhhCceeeHHHHHHhcCCHHHHHHHHHHhcC
Confidence 467776 44456667 88999999999999999998864
No 8
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=54.58 E-value=27 Score=28.00 Aligned_cols=96 Identities=17% Similarity=0.203 Sum_probs=60.1
Q ss_pred cccCc-cchHHHHHHHHHhccCCcEEEEEecCCcccccccCCCCCCCCCCcceeeEeeee-----CCCcEEEEEEccCCC
Q 023526 21 PALSI-GNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLALPLQAYES-----SSSGLTLIQQRSPVV 94 (281)
Q Consensus 21 p~~s~-GnVgqLA~DlLI~sl~~~~vG~l~s~~l~P~vg~~~~~~~~~~~l~tp~evY~~-----~~~~i~vlq~rspi~ 94 (281)
...|. |..|+..+..+.++-+++.+|.++... .+.+|.|.... -+.-.+.+.+|.+ .+-+++| +..
T Consensus 4 ~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~-~~~~g~d~g~~--~~~~~~~~~v~~~l~~~~~~~DVvI---DfT-- 75 (124)
T PF01113_consen 4 GIVGASGRMGRAIAEAILESPGFELVGAVDRKP-SAKVGKDVGEL--AGIGPLGVPVTDDLEELLEEADVVI---DFT-- 75 (124)
T ss_dssp EEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT-STTTTSBCHHH--CTSST-SSBEBS-HHHHTTH-SEEE---EES--
T ss_pred EEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC-cccccchhhhh--hCcCCcccccchhHHHhcccCCEEE---EcC--
Confidence 44567 999999999999999999999999876 44454432100 1122455555543 1133443 222
Q ss_pred chhHHHHHHHHHHHHHHhCCCeEEEEeccCccc
Q 023526 95 KGMMVEYAKNLADFAAASGNKHVVVLSALDFGR 127 (281)
Q Consensus 95 ~~~~~~f~~~l~~wi~~~~~~~vi~Lss~~a~~ 127 (281)
..+-+.+.++++.++|..-|+--||.....
T Consensus 76 ---~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~ 105 (124)
T PF01113_consen 76 ---NPDAVYDNLEYALKHGVPLVIGTTGFSDEQ 105 (124)
T ss_dssp ----HHHHHHHHHHHHHHT-EEEEE-SSSHHHH
T ss_pred ---ChHHhHHHHHHHHhCCCCEEEECCCCCHHH
Confidence 345677789999999998777788886443
No 9
>COG4273 Uncharacterized conserved protein [Function unknown]
Probab=52.74 E-value=14 Score=30.42 Aligned_cols=24 Identities=42% Similarity=0.425 Sum_probs=21.8
Q ss_pred CCCEEEEcccCccchHHHHHHHHH
Q 023526 14 SCSNLILPALSIGNVGQLAVDLLV 37 (281)
Q Consensus 14 ~~~tLI~p~~s~GnVgqLA~DlLI 37 (281)
+..+||.++.|..|||||+-++-+
T Consensus 14 ~~l~lIfaCSG~snVgql~n~~av 37 (135)
T COG4273 14 RKLPLIFACSGASNVGQLANQLAV 37 (135)
T ss_pred CCCceEEEccccchHHHHHHHHHH
Confidence 567899999999999999999876
No 10
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=50.19 E-value=98 Score=25.32 Aligned_cols=102 Identities=18% Similarity=0.192 Sum_probs=63.2
Q ss_pred cccCc-cchHHHHHHHHHhccCCcEEEEEecC-CcccccccCCCCCCCCCCcceeeEeeee-----CCCcEEEEEEccCC
Q 023526 21 PALSI-GNVGQLAVDLLVSSTGAETVGYLDDQ-FVLPCVGNDAYRPSPRGDLALPLQAYES-----SSSGLTLIQQRSPV 93 (281)
Q Consensus 21 p~~s~-GnVgqLA~DlLI~sl~~~~vG~l~s~-~l~P~vg~~~~~~~~~~~l~tp~evY~~-----~~~~i~vlq~rspi 93 (281)
..+|. |+||+-.+-+|+..--.+++.-+|.. ....-... +..+. ......+.+++.+ ++-+++|+-...|.
T Consensus 4 ~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~-Dl~~~-~~~~~~~~~i~~~~~~~~~~aDivvitag~~~ 81 (141)
T PF00056_consen 4 AIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEAL-DLSHA-SAPLPSPVRITSGDYEALKDADIVVITAGVPR 81 (141)
T ss_dssp EEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHH-HHHHH-HHGSTEEEEEEESSGGGGTTESEEEETTSTSS
T ss_pred EEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeeh-hhhhh-hhhcccccccccccccccccccEEEEeccccc
Confidence 45677 99999988888877445789888876 21111101 11000 0011133444432 45679998888877
Q ss_pred CchhH--------HHHHHHHHHHHHHhCCCeEEEEeccC
Q 023526 94 VKGMM--------VEYAKNLADFAAASGNKHVVVLSALD 124 (281)
Q Consensus 94 ~~~~~--------~~f~~~l~~wi~~~~~~~vi~Lss~~ 124 (281)
-++.. .+..+++.+.+++.+++-++++.+-+
T Consensus 82 ~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNP 120 (141)
T PF00056_consen 82 KPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNP 120 (141)
T ss_dssp STTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSS
T ss_pred cccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCc
Confidence 65433 35788899999999998888777654
No 11
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=43.94 E-value=1.6e+02 Score=26.20 Aligned_cols=99 Identities=18% Similarity=0.211 Sum_probs=51.9
Q ss_pred EEEEcccCccchHHHHHHHHHhccCCcEEEEEecCC--ccc---ccccCCCCCCCCCCcceeeEeeee-CC--CcEEEEE
Q 023526 17 NLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQF--VLP---CVGNDAYRPSPRGDLALPLQAYES-SS--SGLTLIQ 88 (281)
Q Consensus 17 tLI~p~~s~GnVgqLA~DlLI~sl~~~~vG~l~s~~--l~P---~vg~~~~~~~~~~~l~tp~evY~~-~~--~~i~vlq 88 (281)
+||+| +.|+||.-.+..|++. +.+-.+-..++. ..+ ++- .++. ....+..+++.... .+ ..++.+
T Consensus 2 ilVtG--atG~iG~~vv~~L~~~-g~~V~~~~R~~~~~~~~~~~~~~-~d~~--d~~~l~~a~~~~~~~~g~~d~v~~~- 74 (285)
T TIGR03649 2 ILLTG--GTGKTASRIARLLQAA-SVPFLVASRSSSSSAGPNEKHVK-FDWL--DEDTWDNPFSSDDGMEPEISAVYLV- 74 (285)
T ss_pred EEEEc--CCChHHHHHHHHHHhC-CCcEEEEeCCCccccCCCCcccc-ccCC--CHHHHHHHHhcccCcCCceeEEEEe-
Confidence 34544 6899999999999864 555444444331 111 110 1221 12233333322110 00 112221
Q ss_pred EccCCCchhHHHHHHHHHHHHHHhCCCeEEEEeccCc
Q 023526 89 QRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDF 125 (281)
Q Consensus 89 ~rspi~~~~~~~f~~~l~~wi~~~~~~~vi~Lss~~a 125 (281)
+|.... .......+++.+++.|++++|++|+...
T Consensus 75 --~~~~~~-~~~~~~~~i~aa~~~gv~~~V~~Ss~~~ 108 (285)
T TIGR03649 75 --APPIPD-LAPPMIKFIDFARSKGVRRFVLLSASII 108 (285)
T ss_pred --CCCCCC-hhHHHHHHHHHHHHcCCCEEEEeecccc
Confidence 222222 2345567899999999999999998654
No 12
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=41.19 E-value=47 Score=30.47 Aligned_cols=38 Identities=26% Similarity=0.323 Sum_probs=30.3
Q ss_pred cCCCCCEEEEcccCccchHHHHHHHHHhccCCcEEEEEecC
Q 023526 11 LSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQ 51 (281)
Q Consensus 11 ~~~~~~tLI~p~~s~GnVgqLA~DlLI~sl~~~~vG~l~s~ 51 (281)
.+++|.++++ .|.||||+-++.+|. .++.+-|+--|+.
T Consensus 34 ~~l~g~~vaI--qGfGnVG~~~a~~L~-e~GakvvaVsD~~ 71 (254)
T cd05313 34 ETLKGKRVAI--SGSGNVAQYAAEKLL-ELGAKVVTLSDSK 71 (254)
T ss_pred CCcCCCEEEE--ECCCHHHHHHHHHHH-HCCCEEEEEECCC
Confidence 4677877654 577999999999995 6789988887765
No 13
>PLN00106 malate dehydrogenase
Probab=41.13 E-value=2.2e+02 Score=27.01 Aligned_cols=107 Identities=15% Similarity=0.076 Sum_probs=65.6
Q ss_pred CEEEEcccCccchHHHHHHHHHhccCCcEEEEEecCCcccccccCCCCCCCCC-Ccc---eeeEeee-eCCCcEEEEEEc
Q 023526 16 SNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRG-DLA---LPLQAYE-SSSSGLTLIQQR 90 (281)
Q Consensus 16 ~tLI~p~~s~GnVgqLA~DlLI~sl~~~~vG~l~s~~l~P~vg~~~~~~~~~~-~l~---tp~evY~-~~~~~i~vlq~r 90 (281)
.+.|+| ..|+||.-..-.|...--...+--+|-.-....+ . +..+.... .+. ..-++|. -++-+++|+...
T Consensus 20 KV~IiG--aaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a-~-Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG 95 (323)
T PLN00106 20 KVAVLG--AAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVA-A-DVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAG 95 (323)
T ss_pred EEEEEC--CCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeE-c-hhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence 455554 2399999988888765445677777754422212 1 21111010 111 1111232 245689999999
Q ss_pred cCCCchhH--------HHHHHHHHHHHHHhCCCeEEEEeccCcc
Q 023526 91 SPVVKGMM--------VEYAKNLADFAAASGNKHVVVLSALDFG 126 (281)
Q Consensus 91 spi~~~~~--------~~f~~~l~~wi~~~~~~~vi~Lss~~a~ 126 (281)
.|-.++.. ..-.+++.+.+++++++.+|+..|-+..
T Consensus 96 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD 139 (323)
T PLN00106 96 VPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVN 139 (323)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 88776422 2347789999999999999999998874
No 14
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=38.18 E-value=1.9e+02 Score=27.06 Aligned_cols=102 Identities=10% Similarity=0.119 Sum_probs=64.1
Q ss_pred cccCccchHHHHHHHHHhccCCcEEEEEecC-CcccccccCCCCCCCCCCcc--eeeEeeee-----CCCcEEEEEEccC
Q 023526 21 PALSIGNVGQLAVDLLVSSTGAETVGYLDDQ-FVLPCVGNDAYRPSPRGDLA--LPLQAYES-----SSSGLTLIQQRSP 92 (281)
Q Consensus 21 p~~s~GnVgqLA~DlLI~sl~~~~vG~l~s~-~l~P~vg~~~~~~~~~~~l~--tp~evY~~-----~~~~i~vlq~rsp 92 (281)
..+|.|+||+-.+-.|+.+--...+--+|-. ...--.. .|..+ ...+. ..++++.+ ++-+++|+-...|
T Consensus 3 ~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a-~DL~~--~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~~ 79 (307)
T cd05290 3 VVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEA-LDFHH--ATALTYSTNTKIRAGDYDDCADADIIVITAGPS 79 (307)
T ss_pred EEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHH-HHHHh--hhccCCCCCEEEEECCHHHhCCCCEEEECCCCC
Confidence 3456799999988877765334678888852 1111110 12211 11121 23567643 4578999988887
Q ss_pred CCchhH----------HHHHHHHHHHHHHhCCCeEEEEeccCc
Q 023526 93 VVKGMM----------VEYAKNLADFAAASGNKHVVVLSALDF 125 (281)
Q Consensus 93 i~~~~~----------~~f~~~l~~wi~~~~~~~vi~Lss~~a 125 (281)
--++.. .+..+++++=+++++++-++++.+-+.
T Consensus 80 ~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPv 122 (307)
T cd05290 80 IDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPL 122 (307)
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcH
Confidence 666542 246778888899999999999888764
No 15
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=32.35 E-value=67 Score=29.11 Aligned_cols=37 Identities=30% Similarity=0.389 Sum_probs=29.9
Q ss_pred CCCCCEEEEcccCccchHHHHHHHHHhccCCcEEEEEecC
Q 023526 12 SESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQ 51 (281)
Q Consensus 12 ~~~~~tLI~p~~s~GnVgqLA~DlLI~sl~~~~vG~l~s~ 51 (281)
++++.++++ .|.||||+-++.+|.+. +.+-|+--|+.
T Consensus 29 ~l~g~~v~I--qGfG~VG~~~a~~l~~~-Ga~vv~vsD~~ 65 (244)
T PF00208_consen 29 SLEGKRVAI--QGFGNVGSHAARFLAEL-GAKVVAVSDSS 65 (244)
T ss_dssp SSTTCEEEE--EESSHHHHHHHHHHHHT-TEEEEEEEESS
T ss_pred CcCCCEEEE--ECCCHHHHHHHHHHHHc-CCEEEEEecCc
Confidence 578887776 56699999999999764 88888887765
No 16
>PF08859 DGC: DGC domain; InterPro: IPR014958 This protein appears to be a zinc binding domain from the conservation of four potential chelating cysteines. The protein is named after a conserved central motif, the function is unknown.
Probab=32.15 E-value=29 Score=27.62 Aligned_cols=21 Identities=43% Similarity=0.559 Sum_probs=17.6
Q ss_pred EEEEcccCccchHHHHHHHHH
Q 023526 17 NLILPALSIGNVGQLAVDLLV 37 (281)
Q Consensus 17 tLI~p~~s~GnVgqLA~DlLI 37 (281)
++|+|+-|..||||||-..-+
T Consensus 1 ~~v~~CSG~s~~Gqla~~aA~ 21 (110)
T PF08859_consen 1 VLVFPCSGCSNVGQLANQAAV 21 (110)
T ss_pred CEEEECCCCChHhHHHHHHHH
Confidence 478999999999999876654
No 17
>PLN02477 glutamate dehydrogenase
Probab=31.76 E-value=74 Score=31.28 Aligned_cols=37 Identities=27% Similarity=0.404 Sum_probs=28.8
Q ss_pred CCCCCEEEEcccCccchHHHHHHHHHhccCCcEEEEEecC
Q 023526 12 SESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQ 51 (281)
Q Consensus 12 ~~~~~tLI~p~~s~GnVgqLA~DlLI~sl~~~~vG~l~s~ 51 (281)
+++|.++++ .|.||||+-++.+|. ..+.+-|+--|+.
T Consensus 203 ~l~g~~VaI--qGfGnVG~~~A~~L~-e~GakVVaVsD~~ 239 (410)
T PLN02477 203 SIAGQTFVI--QGFGNVGSWAAQLIH-EKGGKIVAVSDIT 239 (410)
T ss_pred CccCCEEEE--ECCCHHHHHHHHHHH-HcCCEEEEEECCC
Confidence 678887544 378999999999885 5688888777764
No 18
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=30.72 E-value=64 Score=28.74 Aligned_cols=31 Identities=10% Similarity=0.207 Sum_probs=24.0
Q ss_pred chhHHHHHHHHHHHHHHhCCCeEEEEeccCc
Q 023526 95 KGMMVEYAKNLADFAAASGNKHVVVLSALDF 125 (281)
Q Consensus 95 ~~~~~~f~~~l~~wi~~~~~~~vi~Lss~~a 125 (281)
+.-...+..++++.+.+.||+++|++.|-..
T Consensus 81 ~~t~~~~l~di~~sl~~~Gf~~ivivngHgG 111 (237)
T PF02633_consen 81 PETLIALLRDILRSLARHGFRRIVIVNGHGG 111 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHT--EEEEEESSTT
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEECCHh
Confidence 3444678999999999999999999999763
No 19
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=27.63 E-value=1e+02 Score=30.82 Aligned_cols=38 Identities=29% Similarity=0.354 Sum_probs=30.7
Q ss_pred cCCCCCEEEEcccCccchHHHHHHHHHhccCCcEEEEEecC
Q 023526 11 LSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQ 51 (281)
Q Consensus 11 ~~~~~~tLI~p~~s~GnVgqLA~DlLI~sl~~~~vG~l~s~ 51 (281)
.+++|.++++ .|.||||+-|+.+|. .++.+-|+--|+.
T Consensus 233 ~~l~Gk~VaV--qG~GnVg~~aa~~L~-e~GakVVavSD~~ 270 (454)
T PTZ00079 233 DSLEGKTVVV--SGSGNVAQYAVEKLL-QLGAKVLTMSDSD 270 (454)
T ss_pred CCcCCCEEEE--ECCCHHHHHHHHHHH-HCCCEEEEEEcCC
Confidence 4688887654 466999999999996 5899999877776
No 20
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=27.45 E-value=97 Score=27.69 Aligned_cols=37 Identities=27% Similarity=0.369 Sum_probs=28.8
Q ss_pred CCCCCEEEEcccCccchHHHHHHHHHhccCCcEEEEEecC
Q 023526 12 SESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQ 51 (281)
Q Consensus 12 ~~~~~tLI~p~~s~GnVgqLA~DlLI~sl~~~~vG~l~s~ 51 (281)
++++.+++ ..|.||||+=++.+|. ..+++-||-.|+.
T Consensus 28 ~l~~~~v~--I~G~G~VG~~~a~~L~-~~g~~vv~v~D~~ 64 (227)
T cd01076 28 GLAGARVA--IQGFGNVGSHAARFLH-EAGAKVVAVSDSD 64 (227)
T ss_pred CccCCEEE--EECCCHHHHHHHHHHH-HCCCEEEEEECCC
Confidence 56666554 3467999999999986 5689999888875
No 21
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=26.40 E-value=1.1e+02 Score=24.99 Aligned_cols=49 Identities=14% Similarity=0.224 Sum_probs=33.4
Q ss_pred eeEeeeeCCCcEEEEEEccCCCchhHHHHHHHHHHHHHHhCCCeEEEEec
Q 023526 73 PLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSA 122 (281)
Q Consensus 73 p~evY~~~~~~i~vlq~rspi~~~~~~~f~~~l~~wi~~~~~~~vi~Lss 122 (281)
=+|+..+++.++.+.+-....-.....+..+++.+|+.++. +++|+|+=
T Consensus 44 Dlrv~~~~~~~~~v~Hg~~~~~~~~~~dvL~~i~~fl~~~p-~E~VIl~~ 92 (146)
T PF00388_consen 44 DLRVWDGNDGELVVYHGITSTSGITFEDVLNDIRDFLFEHP-SEPVILSL 92 (146)
T ss_dssp EEEEEEETTSSEEEEETTSEE-EEEHHHHHHHHHHHTTHST-TS-EEEEE
T ss_pred EEEEEcCCCCceEEEeCCEeeeeEeHHHHHHHHHHHHhcCC-CeEEEEEe
Confidence 35566655556777776665545567789999999999877 56777743
No 22
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=26.06 E-value=2.5e+02 Score=25.57 Aligned_cols=104 Identities=20% Similarity=0.153 Sum_probs=58.3
Q ss_pred CccchHHHHHHHHHhccCCcEEEEEecCCccccccc-CCCCCC--CCCCcceeeEeeeeCCCcEEEEEEccCCCchh---
Q 023526 24 SIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGN-DAYRPS--PRGDLALPLQAYESSSSGLTLIQQRSPVVKGM--- 97 (281)
Q Consensus 24 s~GnVgqLA~DlLI~sl~~~~vG~l~s~~l~P~vg~-~~~~~~--~~~~l~tp~evY~~~~~~i~vlq~rspi~~~~--- 97 (281)
+.|.||+=-+..|+..-....|-.+|-..-+..... ...... -.+.++.+-.+..--+.-=+|++.-+|+....
T Consensus 5 gsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~~~~~~ 84 (280)
T PF01073_consen 5 GSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVPPWGDYP 84 (280)
T ss_pred CCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCccccccCccc
Confidence 679999999999987766567776663322211100 000000 01112221111110011237777777765532
Q ss_pred HHHH-------HHHHHHHHHHhCCCeEEEEeccCccc
Q 023526 98 MVEY-------AKNLADFAAASGNKHVVVLSALDFGR 127 (281)
Q Consensus 98 ~~~f-------~~~l~~wi~~~~~~~vi~Lss~~a~~ 127 (281)
...+ .+.|++-+++.+++++|+.||..+..
T Consensus 85 ~~~~~~vNV~GT~nvl~aa~~~~VkrlVytSS~~vv~ 121 (280)
T PF01073_consen 85 PEEYYKVNVDGTRNVLEAARKAGVKRLVYTSSISVVF 121 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCcceeE
Confidence 2222 45589999999999999999998754
No 23
>PRK14030 glutamate dehydrogenase; Provisional
Probab=25.72 E-value=1.1e+02 Score=30.56 Aligned_cols=37 Identities=19% Similarity=0.136 Sum_probs=29.4
Q ss_pred CCCCCEEEEcccCccchHHHHHHHHHhccCCcEEEEEecC
Q 023526 12 SESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQ 51 (281)
Q Consensus 12 ~~~~~tLI~p~~s~GnVgqLA~DlLI~sl~~~~vG~l~s~ 51 (281)
+++|.++++ .|.||||+-|+.+|. .++.+-|+--|+.
T Consensus 225 ~l~g~~vaI--QGfGnVG~~aA~~L~-e~GakvVavSD~~ 261 (445)
T PRK14030 225 DIKGKTVAI--SGFGNVAWGAATKAT-ELGAKVVTISGPD 261 (445)
T ss_pred CcCCCEEEE--ECCCHHHHHHHHHHH-HCCCEEEEEEcCC
Confidence 678887654 568999999999995 6899999865554
No 24
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=25.67 E-value=1e+02 Score=26.12 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=25.6
Q ss_pred ccCCCCCEEEEcccCccchHHHHHHHHHhccCCcEEEE
Q 023526 10 HLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGY 47 (281)
Q Consensus 10 ~~~~~~~tLI~p~~s~GnVgqLA~DlLI~sl~~~~vG~ 47 (281)
..++.|.|+ +.+|.|++|+-.+..+- .++|+-+++
T Consensus 31 ~~~l~g~tv--gIiG~G~IG~~vA~~l~-~fG~~V~~~ 65 (178)
T PF02826_consen 31 GRELRGKTV--GIIGYGRIGRAVARRLK-AFGMRVIGY 65 (178)
T ss_dssp BS-STTSEE--EEESTSHHHHHHHHHHH-HTT-EEEEE
T ss_pred ccccCCCEE--EEEEEcCCcCeEeeeee-cCCceeEEe
Confidence 356778875 77899999999999885 899955444
No 25
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=25.25 E-value=2.3e+02 Score=20.75 Aligned_cols=46 Identities=20% Similarity=0.328 Sum_probs=33.1
Q ss_pred eeeeCCCcEEEEEEccCCCc---hhHHHHHHHHHHHHHHhCCCeEEEEec
Q 023526 76 AYESSSSGLTLIQQRSPVVK---GMMVEYAKNLADFAAASGNKHVVVLSA 122 (281)
Q Consensus 76 vY~~~~~~i~vlq~rspi~~---~~~~~f~~~l~~wi~~~~~~~vi~Lss 122 (281)
-|...++.+.+....+|.-- |....++++.++|++++|.+ |+-.-+
T Consensus 15 ~Y~~~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~k-v~p~C~ 63 (78)
T PF14542_consen 15 TYREDGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENGLK-VVPTCS 63 (78)
T ss_dssp EEEESSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-E-EEETSH
T ss_pred EEEeCCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCE-EEEECH
Confidence 34445677888888887653 77889999999999999986 554433
No 26
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=25.25 E-value=2.4e+02 Score=26.39 Aligned_cols=104 Identities=9% Similarity=0.050 Sum_probs=60.8
Q ss_pred CEEEEcccCccchHHHHHHHHHhccCCcEEEEEecCC-cccccccCCCCCCCCCCcceeeEeeee------CCCcEEEEE
Q 023526 16 SNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQF-VLPCVGNDAYRPSPRGDLALPLQAYES------SSSGLTLIQ 88 (281)
Q Consensus 16 ~tLI~p~~s~GnVgqLA~DlLI~sl~~~~vG~l~s~~-l~P~vg~~~~~~~~~~~l~tp~evY~~------~~~~i~vlq 88 (281)
.+-|+| .|+||+-.+-.|+..=-...+--+|..- ...-... +..+ ...+.....|+.. ++-+++|+-
T Consensus 5 Ki~IiG---aG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~-Dl~~--~~~~~~~~~v~~~~dy~~~~~adivvit 78 (312)
T cd05293 5 KVTVVG---VGQVGMACAISILAKGLADELVLVDVVEDKLKGEAM-DLQH--GSAFLKNPKIEADKDYSVTANSKVVIVT 78 (312)
T ss_pred EEEEEC---CCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHH-HHHH--hhccCCCCEEEECCCHHHhCCCCEEEEC
Confidence 345555 6999998777776553346788887532 1111100 1111 0011111244431 356788886
Q ss_pred EccCCCchhHH--------HHHHHHHHHHHHhCCCeEEEEeccCc
Q 023526 89 QRSPVVKGMMV--------EYAKNLADFAAASGNKHVVVLSALDF 125 (281)
Q Consensus 89 ~rspi~~~~~~--------~f~~~l~~wi~~~~~~~vi~Lss~~a 125 (281)
...|.-++..+ ...+++++-+++++++.++++-+-+.
T Consensus 79 aG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~ 123 (312)
T cd05293 79 AGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPV 123 (312)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChH
Confidence 66665554222 35788899999999999998888665
No 27
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=23.78 E-value=2.4e+02 Score=23.48 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=24.0
Q ss_pred cccCccchHHHHHHHHHhccCCcEEEEEec
Q 023526 21 PALSIGNVGQLAVDLLVSSTGAETVGYLDD 50 (281)
Q Consensus 21 p~~s~GnVgqLA~DlLI~sl~~~~vG~l~s 50 (281)
+..|.|-+|++.++.+...-+++-++-.|.
T Consensus 4 ~I~G~GriGr~v~~~~~~~~~~~lvai~d~ 33 (149)
T smart00846 4 GINGFGRIGRLVLRALLERPDIEVVAINDL 33 (149)
T ss_pred EEECcCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 344569999999999987778888887763
No 28
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=22.95 E-value=97 Score=27.52 Aligned_cols=37 Identities=22% Similarity=0.250 Sum_probs=29.0
Q ss_pred CCCCCEEEEcccCccchHHHHHHHHHhccCCcEEEEEecC
Q 023526 12 SESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQ 51 (281)
Q Consensus 12 ~~~~~tLI~p~~s~GnVgqLA~DlLI~sl~~~~vG~l~s~ 51 (281)
++++.++++ .|.||||+-++.+|.+ ++.+.|+-.|+.
T Consensus 20 ~l~g~~vaI--qGfGnVG~~~a~~L~~-~G~~vV~vsD~~ 56 (217)
T cd05211 20 SLEGLTVAV--QGLGNVGWGLAKKLAE-EGGKVLAVSDPD 56 (217)
T ss_pred CcCCCEEEE--ECCCHHHHHHHHHHHH-cCCEEEEEEcCC
Confidence 566765443 5789999999999974 588889988876
No 29
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=22.69 E-value=1.7e+02 Score=28.94 Aligned_cols=101 Identities=16% Similarity=0.266 Sum_probs=57.8
Q ss_pred EEEcccCccchHHHHHHHHHhccCCcEEEEEe----cCCcccccccCCCCCCCCCCcceeeEeeee-----CCCcEEEEE
Q 023526 18 LILPALSIGNVGQLAVDLLVSSTGAETVGYLD----DQFVLPCVGNDAYRPSPRGDLALPLQAYES-----SSSGLTLIQ 88 (281)
Q Consensus 18 LI~p~~s~GnVgqLA~DlLI~sl~~~~vG~l~----s~~l~P~vg~~~~~~~~~~~l~tp~evY~~-----~~~~i~vlq 88 (281)
+=++..|.|-+|++....++...+++-|.--| .+++.-+. -|+.- .|.+...+++..+ .++++.|.+
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayll---kyDS~-hG~f~~~v~~~~~~~l~~~G~~I~V~~ 161 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMF---KYDST-HGNFKGTINVVDDSTLEINGKQIKVTS 161 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHh---hhccC-CCCCCCcEEEccCCEEEECCEEEEEEe
Confidence 45889999999999999998767787665322 23443333 23221 3455555553211 356777776
Q ss_pred EccCCCc-----------hhHHHHHHH-HHHHHHHhCCCeEEEEec
Q 023526 89 QRSPVVK-----------GMMVEYAKN-LADFAAASGNKHVVVLSA 122 (281)
Q Consensus 89 ~rspi~~-----------~~~~~f~~~-l~~wi~~~~~~~vi~Lss 122 (281)
.|.|--- .....|... -..-..+.|.++||+=.+
T Consensus 162 ~~dp~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap 207 (421)
T PLN02272 162 KRDPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAP 207 (421)
T ss_pred cCCcccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCC
Confidence 6633211 122234333 444445678888877655
No 30
>PLN02602 lactate dehydrogenase
Probab=22.54 E-value=3.4e+02 Score=25.95 Aligned_cols=104 Identities=12% Similarity=0.122 Sum_probs=62.7
Q ss_pred CEEEEcccCccchHHHHHHHHHhccCCcEEEEEecC-CcccccccCCCCCCCCCCcceeeEeeee------CCCcEEEEE
Q 023526 16 SNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQ-FVLPCVGNDAYRPSPRGDLALPLQAYES------SSSGLTLIQ 88 (281)
Q Consensus 16 ~tLI~p~~s~GnVgqLA~DlLI~sl~~~~vG~l~s~-~l~P~vg~~~~~~~~~~~l~tp~evY~~------~~~~i~vlq 88 (281)
.+-|+| .|+||+-.+-.|+..--...+.-+|-. ....-... |..+. -.+....+|+.+ ++-+++|+-
T Consensus 39 KI~IIG---aG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~-DL~~~--~~~~~~~~i~~~~dy~~~~daDiVVit 112 (350)
T PLN02602 39 KVSVVG---VGNVGMAIAQTILTQDLADELALVDVNPDKLRGEML-DLQHA--AAFLPRTKILASTDYAVTAGSDLCIVT 112 (350)
T ss_pred EEEEEC---CCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHH-HHHhh--hhcCCCCEEEeCCCHHHhCCCCEEEEC
Confidence 445555 699999888777654333678888853 11111101 11110 011112355532 467899998
Q ss_pred EccCCCchhHH--------HHHHHHHHHHHHhCCCeEEEEeccCc
Q 023526 89 QRSPVVKGMMV--------EYAKNLADFAAASGNKHVVVLSALDF 125 (281)
Q Consensus 89 ~rspi~~~~~~--------~f~~~l~~wi~~~~~~~vi~Lss~~a 125 (281)
...|.-++..+ +..+++++-+++++++.++++-+-+.
T Consensus 113 AG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPv 157 (350)
T PLN02602 113 AGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPV 157 (350)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCch
Confidence 77776665332 35778889999999999888888654
No 31
>cd08557 PI-PLCc_bacteria_like Catalytic domain of bacterial phosphatidylinositol-specific phospholipase C and similar proteins. This subfamily corresponds to the catalytic domain present in bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and their sequence homologs found in eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Its catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. Eukaryotic homologs in this family are named as phosphatidylinositol-specific phospholipase C X
Probab=22.36 E-value=2.5e+02 Score=24.87 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=31.6
Q ss_pred eEeeeeC-CCcEEEEEEccCCCchhHHHHHHHHHHHHHHhCCCeEEEEec
Q 023526 74 LQAYESS-SSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSA 122 (281)
Q Consensus 74 ~evY~~~-~~~i~vlq~rspi~~~~~~~f~~~l~~wi~~~~~~~vi~Lss 122 (281)
+|++... +.++.+.+.-...-.....++.+++.+|++++. +++|+|.=
T Consensus 56 lr~~~~~~~~~~~~~H~~~~~~~~~~~~vL~~i~~fl~~~p-~E~vil~~ 104 (271)
T cd08557 56 LRVAYDPDDGDLYVCHGLFLLNGQTLEDVLNEVKDFLDAHP-SEVVILDL 104 (271)
T ss_pred EEeeeecCCCcEEEEccccccCcccHHHHHHHHHHHHHHCC-CcEEEEEE
Confidence 3444433 356666554333323567889999999999987 78888753
No 32
>TIGR01599 PYST-A Plasmodium yoelii subtelomeric family PYST-A. A single high-scoring gene was identified in the complete genome of P. falciparum as well as a single gene from P. chaboudi from GenBank which were included in the seed. There are no obvious homologs to these genes in any non-Plasmodium organism. These observations suggest an expansion of this family in yoelii from a common Plasmodium ancestor gene (present in a single copy in falciparum).
Probab=22.33 E-value=28 Score=31.11 Aligned_cols=53 Identities=21% Similarity=0.279 Sum_probs=40.6
Q ss_pred eeeEeeeeCCCcEEEEEEccCCCchhHHHHHHHHHHHHHHhCCCeEEEEeccCccc
Q 023526 72 LPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGR 127 (281)
Q Consensus 72 tp~evY~~~~~~i~vlq~rspi~~~~~~~f~~~l~~wi~~~~~~~vi~Lss~~a~~ 127 (281)
.-+|+|. .+++++|||--=.......+.-+|+.=++-+.=+.||+.+|.+...
T Consensus 97 ki~RvYn---pNLvmiqqry~~~~~~~~~YfyaLa~Kv~iSed~TiIv~~S~~ind 149 (208)
T TIGR01599 97 KVVRVYS---PNLIMIQQRYKDASGSPNKYFYALATKVKVSEDTTIIACTSANIND 149 (208)
T ss_pred eEEEEeC---CCeEEEEeecCCCCCCcceEEeEeeeeeecCCCcEEEEEecccccc
Confidence 4789996 6899999999776666666666777766666667788999987654
No 33
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=22.20 E-value=1.4e+02 Score=18.44 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=20.6
Q ss_pred chhHHHHHHHHHHHHHHhCCCeEEE
Q 023526 95 KGMMVEYAKNLADFAAASGNKHVVV 119 (281)
Q Consensus 95 ~~~~~~f~~~l~~wi~~~~~~~vi~ 119 (281)
++....+.+.+.+|+.+.+++.|.+
T Consensus 40 ~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 40 KGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred cCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 4667889999999999999987754
No 34
>PRK08788 enoyl-CoA hydratase; Validated
Probab=21.44 E-value=3.3e+02 Score=25.22 Aligned_cols=55 Identities=13% Similarity=0.106 Sum_probs=34.2
Q ss_pred CcceeeEeeeeCCCcEEEEEEccCCCchhHHHHHHHHHHHHHHhC--------CCeEEEEecc
Q 023526 69 DLALPLQAYESSSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASG--------NKHVVVLSAL 123 (281)
Q Consensus 69 ~l~tp~evY~~~~~~i~vlq~rspi~~~~~~~f~~~l~~wi~~~~--------~~~vi~Lss~ 123 (281)
.--+.+.|....+.++..|..|-+-......++.++|.+-+.+.. --++|+|+|-
T Consensus 12 ~~~~~~~i~~e~~~~ia~itl~p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~ 74 (287)
T PRK08788 12 GELSQLRVYYEEERNVMWMYMRAQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASD 74 (287)
T ss_pred cccCceEEEEEccCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcC
Confidence 344677887776778888888833333455567776654444332 1268888886
No 35
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=20.55 E-value=2.8e+02 Score=20.80 Aligned_cols=39 Identities=8% Similarity=0.160 Sum_probs=31.6
Q ss_pred CCcEEEEEEccCCCchhHHHHHHHHHHHHHHhCCCeEEE
Q 023526 81 SSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVV 119 (281)
Q Consensus 81 ~~~i~vlq~rspi~~~~~~~f~~~l~~wi~~~~~~~vi~ 119 (281)
..++++++..-|+.-+....|.+.+.+.+.+.+.+.+|+
T Consensus 6 ~~~~~vi~l~G~L~f~~~~~~~~~l~~~~~~~~~~~vil 44 (106)
T TIGR02886 6 KGDVLIVRLSGELDHHTAERVRRKIDDAIERRPIKHLIL 44 (106)
T ss_pred ECCEEEEEEecccchhhHHHHHHHHHHHHHhCCCCEEEE
Confidence 357999999999999999999999999887666654443
No 36
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=20.18 E-value=56 Score=24.43 Aligned_cols=25 Identities=12% Similarity=0.166 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEeccCc
Q 023526 101 YAKNLADFAAASGNKHVVVLSALDF 125 (281)
Q Consensus 101 f~~~l~~wi~~~~~~~vi~Lss~~a 125 (281)
+-..+.+++++.++++|++++|..+
T Consensus 60 l~~~~~~~l~~~~~~~v~iiGg~~~ 84 (92)
T PF04122_consen 60 LPSSVKAFLKSLNIKKVYIIGGEGA 84 (92)
T ss_pred CCHHHHHHHHHcCCCEEEEECCCCc
Confidence 3345566666667777777766543
Done!