Query 023526
Match_columns 281
No_of_seqs 134 out of 272
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 08:19:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023526.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023526hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g4s_P Proteasome assembly cha 100.0 3.2E-59 1.1E-63 426.5 11.6 244 15-281 3-264 (269)
2 3gaa_A Uncharacterized protein 100.0 1E-27 3.4E-32 216.7 17.3 193 8-251 19-214 (252)
3 2p90_A Hypothetical protein CG 99.8 1.4E-19 4.8E-24 168.5 14.1 190 12-251 22-229 (319)
4 3mnf_A PAC2 family protein; PS 99.8 4.1E-17 1.4E-21 147.0 19.5 187 12-251 2-210 (250)
5 2wam_A RV2714, conserved hypot 99.6 3.1E-15 1E-19 140.5 14.6 189 12-251 62-269 (351)
6 3e35_A Uncharacterized protein 99.6 3.8E-15 1.3E-19 138.6 14.4 187 11-250 24-231 (325)
7 3abd_A Mitotic spindle assembl 53.1 7.2 0.00025 33.8 2.6 52 73-124 54-107 (227)
8 4aez_B MAD2, mitotic spindle c 51.2 8.2 0.00028 33.0 2.6 44 81-124 47-91 (203)
9 2vfx_A Mitotic spindle assembl 50.9 8.3 0.00028 32.9 2.6 52 73-124 40-93 (206)
10 1gtm_A Glutamate dehydrogenase 49.2 16 0.00054 34.5 4.5 37 13-51 210-246 (419)
11 2tmg_A Protein (glutamate dehy 45.4 23 0.00079 33.4 5.0 39 12-52 206-244 (415)
12 3aog_A Glutamate dehydrogenase 36.5 38 0.0013 32.2 5.0 37 12-51 232-268 (440)
13 4fcc_A Glutamate dehydrogenase 35.9 44 0.0015 31.9 5.3 38 11-51 231-268 (450)
14 1v9l_A Glutamate dehydrogenase 35.2 39 0.0013 31.9 4.8 38 12-52 207-244 (421)
15 3aoe_E Glutamate dehydrogenase 34.7 43 0.0015 31.6 5.0 37 12-51 215-251 (419)
16 3ius_A Uncharacterized conserv 33.8 2.1E+02 0.007 23.8 9.3 98 15-126 6-107 (286)
17 3mw9_A GDH 1, glutamate dehydr 33.7 52 0.0018 31.9 5.4 39 10-51 239-277 (501)
18 2yfq_A Padgh, NAD-GDH, NAD-spe 33.4 25 0.00086 33.2 3.1 37 12-51 209-245 (421)
19 3k92_A NAD-GDH, NAD-specific g 31.6 35 0.0012 32.3 3.8 37 12-51 218-254 (424)
20 1g2o_A Purine nucleoside phosp 31.4 1.5E+02 0.0051 25.9 7.7 93 30-127 13-125 (268)
21 1bgv_A Glutamate dehydrogenase 31.3 45 0.0015 31.8 4.5 38 11-51 226-263 (449)
22 2bma_A Glutamate dehydrogenase 27.8 38 0.0013 32.5 3.3 38 11-51 248-285 (470)
23 1v7z_A Creatininase, creatinin 27.8 55 0.0019 28.5 4.2 31 94-124 91-121 (260)
24 3r3j_A Glutamate dehydrogenase 25.8 33 0.0011 32.8 2.5 38 11-51 235-272 (456)
25 3lub_A Putative creatinine ami 24.4 71 0.0024 27.7 4.3 32 94-125 91-122 (254)
26 3no4_A Creatininase, creatinin 22.3 81 0.0028 27.8 4.2 33 93-125 99-131 (267)
27 1c1d_A L-phenylalanine dehydro 20.5 1E+02 0.0035 28.3 4.6 35 12-50 172-206 (355)
No 1
>4g4s_P Proteasome assembly chaperone 2; alpha beta, NTN-hydrolase, peptide binding, hydrolase-chaper complex; HET: LDZ; 2.49A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-59 Score=426.54 Aligned_cols=244 Identities=20% Similarity=0.305 Sum_probs=153.0
Q ss_pred CCEEEEcccCccchHHHHHHHHHhcc--CCcEEEEEecCCcccccccCCCCCC--------CCCCcceeeEeeeeCCCcE
Q 023526 15 CSNLILPALSIGNVGQLAVDLLVSST--GAETVGYLDDQFVLPCVGNDAYRPS--------PRGDLALPLQAYESSSSGL 84 (281)
Q Consensus 15 ~~tLI~p~~s~GnVgqLA~DlLI~sl--~~~~vG~l~s~~l~P~vg~~~~~~~--------~~~~l~tp~evY~~~~~~i 84 (281)
++|||+|+||+|||||||+||||||| +++|||+||+++++||||+++|..+ +++.++|++|||+++++++
T Consensus 3 ~stLIlP~VSvGNVgQLavDLLI~tl~~~~~kVG~l~~~~l~P~vGp~~~~~~~~~~~~~~~~~~lsta~EvY~~~~~~l 82 (269)
T 4g4s_P 3 MSCLVLPLVSVGNIPQLSIDWLLNSQANEWEYLEALDSKYLVEFVGPLDRPEDGSDSLYKDADMKYSSALEVFYNKKRGL 82 (269)
T ss_dssp CCEEEEECCCGGGHHHHHHHHHHHHTCSSEEEEEECCCTTBCCCEECCCCBSSSCCCSCCCTTCCCEESEEEEEETTTTE
T ss_pred ceEEEEeccccccHHHHHHHHHHhcCcccceEEEEecCCcccceeCCcccccccccccccCCccceeeeEEEEEcCCCCE
Confidence 58999999999999999999999999 7899999999999999999988532 3578999999999999999
Q ss_pred EEEEEccCCCc-hhHHH-HHHHHHHHHHHhCCCeEEEEeccCccccccccCCCCCeEEEEecCCCCCchhHHHhhCcccc
Q 023526 85 TLIQQRSPVVK-GMMVE-YAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRL 162 (281)
Q Consensus 85 ~vlq~rspi~~-~~~~~-f~~~l~~wi~~~~~~~vi~Lss~~a~~r~~~~~~~~~~~~~~~s~~~~~~~~~~~~L~~~~~ 162 (281)
+||||||||++ ++.++ |++.|++|++++||++||+|+|+++.+|+|.++.+++.+|.++....+...+.++.++|.++
T Consensus 83 ~viQqRSPii~~~~~~~~f~e~L~~~i~~~~f~~VivLsS~~a~~r~d~~~~~~~~~y~~~~~~~~~~~~~l~~l~l~~~ 162 (269)
T 4g4s_P 83 FAIQQRTPLVSVNYLNNFIVEIILPFLSKYNISEICIWDSLYAMEDENGVIVRPQEVYSLGEFYFDDEAELLSNLHLNDQ 162 (269)
T ss_dssp EEEEECSCBSCGGGHHHHHHHHHHHHHHGGGCSEEEEECCBCCC------------------------------------
T ss_pred EEEEEeccccccchhhHHHHHHHHHHHHHcCCCEEEEEecCccccccchhccCCceEEeccccccchhHHHhcccccccc
Confidence 99999999997 44554 55559999999999999999999999999988888887787766544445556666666655
Q ss_pred cccCccccchhhhhhcccCCCCCCCCCCCcccccccccCCCCChHHH----HHHHHh-c-CCceEEEEEEeccCCCHHHH
Q 023526 163 QEYNPAQRGWKYLSSLAEGDVGDENNFTFEDDLEEEDYYPSLPFAAL----FSCFKA-R-GLKVTCLLCYCSEGDNMADA 236 (281)
Q Consensus 163 e~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lP~~~L----~~~~~~-~-~i~~~~L~~f~~EGDN~~DA 236 (281)
+.. +..|...... ... .......|++++ +.++++ + .++++||++||+||||++||
T Consensus 163 ~~~---~~~~~~~~~~-----------~~~-----~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~L~~fcsEGDN~~DA 223 (269)
T 4g4s_P 163 ESM---VNNWLHFTPT-----------SFQ-----DKISVDQPIFKILFQILNASQRPKALRSIKYCSCLANEGDNSLDS 223 (269)
T ss_dssp ---------------------------------------CCHHHHHHTTC------------CEECCCCBCCCSCCTTHH
T ss_pred ccc---cccccccCcc-----------ccc-----cccccCCchhHHHHHHHhhccccccccceEEEEEEeecCCCHHHH
Confidence 432 2222222110 001 111234455553 333332 2 36899999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCCCcccCCccccccCCCCCCCCC
Q 023526 237 FNLADAACKFLRLNPDNVRGDDGEKWIVPFSWMTVYGPPPDMSMF 281 (281)
Q Consensus 237 ~~lA~~l~~~L~~~~~~~~~~~~~~w~~P~SW~~lyG~~~~~~ly 281 (281)
+.||++|++++++... ....+|++|+||++|||+++++++|
T Consensus 224 ~~la~~l~~~l~~~~~----~~~~~w~~P~SW~~lfG~~~~~~~f 264 (269)
T 4g4s_P 224 QQFLQWIISQKVIKNA----PPIVKFVRPISWQGAYGMADARDKF 264 (269)
T ss_dssp HHHHHHHSCC-------------CCCCCBGGGGGTTCSSCHHHHH
T ss_pred HHHHHHHHHHHcccCC----CCcCCccCCCccccccCCCCCchHH
Confidence 9999999999988642 1245799999999999999987765
No 2
>3gaa_A Uncharacterized protein TA1441; the protein with unknown function from thermoplasma acidophi structural genomics,PSI, MCSG; 2.70A {Thermoplasma acidophilum}
Probab=99.95 E-value=1e-27 Score=216.68 Aligned_cols=193 Identities=14% Similarity=0.153 Sum_probs=155.9
Q ss_pred CCccCCCCCEEEEcccCccchHHHHHHHHHhccCCcEEEEEecCCcccccccCCCCCCCCCCcceeeEeeeeCCCcEEEE
Q 023526 8 GKHLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFVLPCVGNDAYRPSPRGDLALPLQAYESSSSGLTLI 87 (281)
Q Consensus 8 ~~~~~~~~~tLI~p~~s~GnVgqLA~DlLI~sl~~~~vG~l~s~~l~P~vg~~~~~~~~~~~l~tp~evY~~~~~~i~vl 87 (281)
...+++++++||.||+|+||||+||+||||++|++++||+||++++||++... +|.+.+|+|+|.++++++++|
T Consensus 19 ~~~~~l~~pvlI~gf~gaG~vg~lA~~hLi~~l~~~~vg~id~~~lPp~v~~~------dg~~~~P~~ly~~~~~~llll 92 (252)
T 3gaa_A 19 LEKRNYNNPVVLCGFAGSTPTGVLAASYIVETLGMHQVAHLISQHIPPVAVFV------GGKLRHPFRIYANNSNTVLVA 92 (252)
T ss_dssp CGGGGCCSCEEEEECCCSSSHHHHHHHHHHHHHTCEEEEECCCTTSCCCEECG------GGCCBCSEEEEECTTSCEEEE
T ss_pred ccCCCCCCCEEEEeCCCccHHHHHHHHHHHHHcCCeEEEEEecCCCCcEEEeC------CCeEecceEEEEECCCCEEEE
Confidence 34578999999999999999999999999999999999999999999999542 358999999999988999999
Q ss_pred EEccCCCchhHHHHHHHHHHHHHHhCCCeEEEEeccCccccccccCCCCCeEEEEecCCCCCchhHHHhhCcccccccCc
Q 023526 88 QQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLGWKRLQEYNP 167 (281)
Q Consensus 88 q~rspi~~~~~~~f~~~l~~wi~~~~~~~vi~Lss~~a~~r~~~~~~~~~~~~~~~s~~~~~~~~~~~~L~~~~~e~~~~ 167 (281)
|++.|++....++|+++|++|+++.|+++||+|+|+++... ...|.+|++ ++ .+..+.+++++....+.
T Consensus 93 ~g~~p~p~~~~~~f~~~vl~~~~~~gv~~vv~Lgg~~~~~~-----~~~p~v~~~-t~--~~l~~~l~~~g~~~~~~--- 161 (252)
T 3gaa_A 93 MCEVPISSAHIYEISNTLMNWIDQVGASEIVIMEGSPANGI-----PEERPVFAV-AE--KPKLDKFKKAGIQPADS--- 161 (252)
T ss_dssp EESSCCCGGGHHHHHHHHHHHHHHHTCSEEEEEEEEEESCC-----CSSCCCEEE-CC--HHHHHHHHHTTCEECCC---
T ss_pred EecCCCChHHHHHHHHHHHHHHHHcCCCEEEEEecccCCCC-----CCCCceEEE-cC--HHHHHHHHhcCCcccCC---
Confidence 99999999999999999999999999999999999987631 113667877 32 33333445554432210
Q ss_pred cccchhhhhhcccCCCCCCCCCCCcccccccccCCCCChHHHHHHHHhcCCceEEEEEEeccCCCHHHHHHHHH---HHH
Q 023526 168 AQRGWKYLSSLAEGDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFKARGLKVTCLLCYCSEGDNMADAFNLAD---AAC 244 (281)
Q Consensus 168 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lP~~~L~~~~~~~~i~~~~L~~f~~EGDN~~DA~~lA~---~l~ 244 (281)
+.+.++.+.|+..|.++|++.++|...+. -..||+.+.+. +|+
T Consensus 162 --------------------------------g~i~G~~g~Ll~~~~~~gi~a~~l~~~vp--~y~pdP~AA~~lL~~l~ 207 (252)
T 3gaa_A 162 --------------------------------AIIAGMGGGILNECLVRKITGLSFITPTS--VDIPDPGAVLSIIEAIN 207 (252)
T ss_dssp --------------------------------SEECHHHHHHHHHHHHHTCEEEEEEEEEE--SSSCCHHHHHHHHHHHH
T ss_pred --------------------------------CCcCCHHHHHHHHHHHcCCCEEEEEEeCC--CCCCCHHHHHHHHHHHH
Confidence 11234456688889999999999999998 66799888665 467
Q ss_pred HHhccCC
Q 023526 245 KFLRLNP 251 (281)
Q Consensus 245 ~~L~~~~ 251 (281)
+++++.-
T Consensus 208 ~~~gl~i 214 (252)
T 3gaa_A 208 KAYNLKI 214 (252)
T ss_dssp HHHCCCC
T ss_pred HHhCCCC
Confidence 7888754
No 3
>2p90_A Hypothetical protein CGL1923; structural genomics, PSI-2, MCSG structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} SCOP: c.56.8.1
Probab=99.81 E-value=1.4e-19 Score=168.45 Aligned_cols=190 Identities=12% Similarity=0.095 Sum_probs=140.3
Q ss_pred CCCCCEE---EEcccCccchHHHHHHHHHhccCCcEEEEEecCCc-------ccccccCCCCCCCCCCcceeeEeeeeCC
Q 023526 12 SESCSNL---ILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFV-------LPCVGNDAYRPSPRGDLALPLQAYESSS 81 (281)
Q Consensus 12 ~~~~~tL---I~p~~s~GnVgqLA~DlLI~sl~~~~vG~l~s~~l-------~P~vg~~~~~~~~~~~l~tp~evY~~~~ 81 (281)
+.++++| |.|++++|+||++|++||+++|++++||+||++++ ||++-..+. -.+....++|||..++
T Consensus 22 ~~~~pvli~a~eG~~daG~vg~iA~~hLi~~l~~~~va~id~d~l~Dy~~~RP~v~~~~d~---~~~~~~p~~~ly~~~~ 98 (319)
T 2p90_A 22 TAGGPTLIVALQGYADAGHAVESSSSHLMDALDHRLIASFNNDELIDYRSRRPVVVIEHNE---VTSMDELNLGLHVVRD 98 (319)
T ss_dssp SSSCCEEEEEEESSSBGGGHHHHHHHHHHHHSCEEEEEEECHHHHCBHHHHCCCEEECSSS---EEEECCCCCEEEEEEC
T ss_pred cCCCCEEEEEeeeCCChhHHHHHHHHHHHHHcCCeEEEEEechhcccccCCCCcEEEECCc---ccccccCCeEEEEecC
Confidence 3689999 99999999999999999999999999999999999 777622110 0134457899998543
Q ss_pred ---CcEEEEEEccCCCchhHHHHHHHHHHHHHHhCCCeEEEEeccCccccccccCCCCCeEEEEecCCCCCchhHHHhhC
Q 023526 82 ---SGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLG 158 (281)
Q Consensus 82 ---~~i~vlq~rspi~~~~~~~f~~~l~~wi~~~~~~~vi~Lss~~a~~r~~~~~~~~~~~~~~~s~~~~~~~~~~~~L~ 158 (281)
+.++++. .|++....++|+++|++|+++.|+++||.|+|+++..-. .....+++.++. .. ..+.+.
T Consensus 99 ~~g~~~lll~--gpeP~~~w~~f~~~vl~~a~~~gV~~vv~Lggl~~~~ph----trp~~V~~~at~--~~---l~~~~~ 167 (319)
T 2p90_A 99 NDNKPFLMLS--GPEPDLRWGDFSNAVVDLVEKFGVENTICLYAAPMTVPH----TRPTVVTAHGNS--TD---RLKDQV 167 (319)
T ss_dssp TTCCEEEEEE--EECCSBCHHHHHHHHHHHHHHTTCCEEEEEEEEEESCCT----TSCCCEEEEESS--GG---GCSSCC
T ss_pred CCCCeEEEEE--CCCChHHHHHHHHHHHHHHHHcCCCEEEEEeCccCCCCC----CCCCCeEEEeCC--HH---HHhhhh
Confidence 3455544 599999999999999999999999999999999874311 112347877764 11 111110
Q ss_pred cccccccCccccchhhhhhcccCCCCCCCCCCCccccccccc-CCCCChHHHHHHHHhcCCceEEEEE----EeccCCCH
Q 023526 159 WKRLQEYNPAQRGWKYLSSLAEGDVGDENNFTFEDDLEEEDY-YPSLPFAALFSCFKARGLKVTCLLC----YCSEGDNM 233 (281)
Q Consensus 159 ~~~~e~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~lP~~~L~~~~~~~~i~~~~L~~----f~~EGDN~ 233 (281)
.. ...+ .++...+-|+..|.+++++.++|+. ||.++++-
T Consensus 168 --~~----------------------------------~~~~~ipggi~glL~~~~~~~Gi~a~~l~~~vphYl~~~pdP 211 (319)
T 2p90_A 168 --SL----------------------------------DTRMTVPGSASLMLEKLLKDKGKNVSGYTVHVPHYVSASPYP 211 (319)
T ss_dssp --CC----------------------------------CCCEEECCCHHHHHHHHHHHTTCCEEEEEEEEEGGGTTSCCH
T ss_pred --cc----------------------------------ccCcEEeccHHHHHHHHHHHCCCCEEEEEEecCcccCCCCCH
Confidence 00 0111 1222345578899999999999998 66788888
Q ss_pred HHHHHHHHHHHHHhccCC
Q 023526 234 ADAFNLADAACKFLRLNP 251 (281)
Q Consensus 234 ~DA~~lA~~l~~~L~~~~ 251 (281)
..|.++.++|++++++.-
T Consensus 212 ~AA~~lL~~l~~l~gl~i 229 (319)
T 2p90_A 212 AATLKLLQSIADSADLNL 229 (319)
T ss_dssp HHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHCCCC
Confidence 888888889999999864
No 4
>3mnf_A PAC2 family protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.97A {Streptomyces avermitilis}
Probab=99.76 E-value=4.1e-17 Score=147.03 Aligned_cols=187 Identities=16% Similarity=0.128 Sum_probs=131.0
Q ss_pred CCCCCEEEEcccCc---cchHHHHHHHHHhccCCcEEEEEecCCc------ccccccCCCCCCCCC--Cc---ceeeEee
Q 023526 12 SESCSNLILPALSI---GNVGQLAVDLLVSSTGAETVGYLDDQFV------LPCVGNDAYRPSPRG--DL---ALPLQAY 77 (281)
Q Consensus 12 ~~~~~tLI~p~~s~---GnVgqLA~DlLI~sl~~~~vG~l~s~~l------~P~vg~~~~~~~~~~--~l---~tp~evY 77 (281)
++++++||.+|+|+ |+||.+|++||+++|++++||+||++.+ +|++. +. ++ .+ .+.+++|
T Consensus 2 ~l~~pvlI~gf~G~~DAG~vg~~a~~hL~~~l~~~~va~id~d~~~dy~~~rP~v~---~~---~g~~~~~~p~~~~~~~ 75 (250)
T 3mnf_A 2 NAIDPVMVAAFEGWNDAGDAASTAVAHLDREWKGEVFAALDAEDYYDFQVNRPTVW---LD---GGVRKITWPTTRLSVV 75 (250)
T ss_dssp ---CCEEEEEEESTTBTTSHHHHHHHHHHHHTTCEEEEECCGGGTCCTTTSCCEEE---EE---TTEEEEECCCEEEEEE
T ss_pred CCCCCEEEEeCCCCCccChHHHHHHHHHHHHcCCeEEEEEechhccccCCCCCEEE---Ee---CCEEEeecCCceEEEE
Confidence 67899999999999 9999999999999999999999999988 89884 31 22 22 2336667
Q ss_pred eeCC---CcEEEEEEccCCCchhHHHHHHHHHHHHHHhCCCeEEEEeccCccccccccCCCCCeEEEEecCCCCCchhHH
Q 023526 78 ESSS---SGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYC 154 (281)
Q Consensus 78 ~~~~---~~i~vlq~rspi~~~~~~~f~~~l~~wi~~~~~~~vi~Lss~~a~~r~~~~~~~~~~~~~~~s~~~~~~~~~~ 154 (281)
..++ ++++++....| ....++|++++++|+++.|+++||.|+|+++...+. ....+++.+++ .+.+
T Consensus 76 ~~~d~~~~~~lll~g~eP--~~~w~~f~~~vl~~a~~~gv~~iv~lgg~~~~~pht----rp~~v~~~at~-----~~l~ 144 (250)
T 3mnf_A 76 RVGGEKPRDLVLVRGIEP--SMRWRSFCNELLAFAHELGVELVVVLGALLGDTPHT----RPVPVSGVTSD-----PDLA 144 (250)
T ss_dssp EEESSSEEEEEEEEEECC--SSCHHHHHHHHHHHHHHHTCCEEEEEEEEEESCCTT----SCCCEEEEECC-----HHHH
T ss_pred ecCCCCCCcEEEEECCCC--chHHHHHHHHHHHHHHHcCCCEEEEEeCccCCCCCC----CCcceEEEECC-----HHHH
Confidence 7533 67888877766 555899999999999999999999999996543211 12368887764 2334
Q ss_pred HhhCcccccccCccccchhhhhhcccCCCCCCCCCCCcccccccccCCCCChHHHHHHHHhcCCceEEEEEEec--cCCC
Q 023526 155 EQLGWKRLQEYNPAQRGWKYLSSLAEGDVGDENNFTFEDDLEEEDYYPSLPFAALFSCFKARGLKVTCLLCYCS--EGDN 232 (281)
Q Consensus 155 ~~L~~~~~e~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lP~~~L~~~~~~~~i~~~~L~~f~~--EGDN 232 (281)
++++....+ -+ .++...+-|..+|.++|++.++|+..|. - -+
T Consensus 145 ~~~~~~~~~----------------------------------~~-~p~gi~glL~~~~~~~gi~a~~l~~~vp~Y~-~~ 188 (250)
T 3mnf_A 145 RTMDLEETK----------------------------------YE-GPTGIVGILQEACTHAGVPAVSLWAAVPHYV-SQ 188 (250)
T ss_dssp HHSCCCCCC----------------------------------CC-SCCCHHHHHHHHHHHHTCCEEEEEEEEEGGG-CC
T ss_pred Hhhhccccc----------------------------------cc-cCccHHHHHHHHHHHCCCCEEEEEEeCCccc-cC
Confidence 443211000 00 1223344578889999999999999872 1 24
Q ss_pred HHHHHHHHH---HHHHHhccCC
Q 023526 233 MADAFNLAD---AACKFLRLNP 251 (281)
Q Consensus 233 ~~DA~~lA~---~l~~~L~~~~ 251 (281)
.||+.+.+. .|++++++.-
T Consensus 189 ~pdP~AA~~lL~~l~~~~gl~v 210 (250)
T 3mnf_A 189 PPNPKATLALLNRLEDLIDVRI 210 (250)
T ss_dssp SCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 567766555 4777888754
No 5
>2wam_A RV2714, conserved hypothetical alanine and leucine rich protein; unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=99.63 E-value=3.1e-15 Score=140.52 Aligned_cols=189 Identities=11% Similarity=-0.012 Sum_probs=130.8
Q ss_pred CCCCCEEEEcccC---ccchHHHHHHHHHhccCCcEEEEEecCCc-------ccccccCCCCCCCCCCcceeeEeeeeC-
Q 023526 12 SESCSNLILPALS---IGNVGQLAVDLLVSSTGAETVGYLDDQFV-------LPCVGNDAYRPSPRGDLALPLQAYESS- 80 (281)
Q Consensus 12 ~~~~~tLI~p~~s---~GnVgqLA~DlLI~sl~~~~vG~l~s~~l-------~P~vg~~~~~~~~~~~l~tp~evY~~~- 80 (281)
++++++||.+|+| +|+||.+|++||+++|++++||.||++.+ |+++-..+- ..+....++++|..+
T Consensus 62 ~l~~pvLI~gf~G~~DAG~vg~iA~~hLi~~L~~~~va~~d~d~~~Dyr~~RP~v~~~~dg---~~~~~~P~~~ly~~~d 138 (351)
T 2wam_A 62 DGRGPVLVHALEGFSDAGHAIRLAAAHLKAALDTELVASFAIDELLDYRSRRPLMTFKTDH---FTHSDDPELSLYALRD 138 (351)
T ss_dssp TSCCCEEEEEEESSCCGGGHHHHHHHHHHHHSEEEEEEEECHHHHCBTTTSCCEEEEETTE---EEEECCCCEEEEEEEC
T ss_pred ccCCCEEEEeCCCCcccchHHHHHHHHHHHHcCCeEEEEEechhccccccCCCcEEEEcCC---ceEeeCCceEEEEecc
Confidence 3789999999998 69999999999999999999999999987 555522110 013566789999643
Q ss_pred --CCcEEEEEEccCCCchhHHHHHHHHHHHHHHhCCCeEEEEeccCccccccccCCCCCeEEEEecCCCCCchhHHHhhC
Q 023526 81 --SSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGPQIYYLSSTSVDGTDDYCEQLG 158 (281)
Q Consensus 81 --~~~i~vlq~rspi~~~~~~~f~~~l~~wi~~~~~~~vi~Lss~~a~~r~~~~~~~~~~~~~~~s~~~~~~~~~~~~L~ 158 (281)
+.+++++.. |.+....++|+++|++|+++.|++.||.|+|+++..... + ...+++.++. . +..+.++
T Consensus 139 ~~g~~~LlL~G--~eP~~~w~~fa~~vl~~a~~~gV~~vvtLgglp~~vpht---R-p~~V~~~at~--~---el~~~~~ 207 (351)
T 2wam_A 139 SIGTPFLLLAG--LEPDLKWERFITAVRLLAERLGVRQTIGLGTVPMAVPHT---R-PITMTAHSNN--R---ELISDFQ 207 (351)
T ss_dssp TTCCEEEEEEE--ECCSBCHHHHHHHHHHHHHHTTCCEEEEEEEEEESCCTT---S-CCCEEEEESS--G---GGGTTSC
T ss_pred CCCCcEEEEEC--CCChhHHHHHHHHHHHHHHHhCCCEEEEEecccCCCCCc---c-CcceEEEECC--H---HHHHhcC
Confidence 356777666 567777899999999999999999999999998754321 1 2247777764 1 1222222
Q ss_pred cccccccCccccchhhhhhcccCCCCCCCCCCCccccccccc-CCCCChHHHHHHHHhcCCceEEEEEEec--cCCCHHH
Q 023526 159 WKRLQEYNPAQRGWKYLSSLAEGDVGDENNFTFEDDLEEEDY-YPSLPFAALFSCFKARGLKVTCLLCYCS--EGDNMAD 235 (281)
Q Consensus 159 ~~~~e~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~lP~~~L~~~~~~~~i~~~~L~~f~~--EGDN~~D 235 (281)
... ..+ .+....+-|...|.++|++.++|...+- - -+.||
T Consensus 208 ~~~------------------------------------~~~~gp~GisglL~~~~~~~Gi~a~~l~~~vP~Yl-a~~pd 250 (351)
T 2wam_A 208 PSI------------------------------------SEIQVPGSASNLLEYRMAQHGHEVVGFTVHVPHYL-TQTDY 250 (351)
T ss_dssp CCC------------------------------------CSEEEECCHHHHHHHHHHHTTCCEEEEEEEEEGGG-TTSCC
T ss_pred Ccc------------------------------------CcccccccHHHHHHHHHHHcCCCEEEEEEeCCccc-cCCCC
Confidence 100 000 0122134577889999999999987772 1 23456
Q ss_pred HHHHHH---HHHHHhccCC
Q 023526 236 AFNLAD---AACKFLRLNP 251 (281)
Q Consensus 236 A~~lA~---~l~~~L~~~~ 251 (281)
+.+.+. .|++++++.-
T Consensus 251 P~AA~alL~~L~~llgl~i 269 (351)
T 2wam_A 251 PAAAQALLEQVAKTGSLQL 269 (351)
T ss_dssp HHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHCCCC
Confidence 655444 5677888754
No 6
>3e35_A Uncharacterized protein SCO1997; alpha/beta/alpha structure, actinobacteria-specific protein, conserved protein, unknown function; 2.20A {Streptomyces coelicolor}
Probab=99.62 E-value=3.8e-15 Score=138.65 Aligned_cols=187 Identities=13% Similarity=0.051 Sum_probs=130.6
Q ss_pred cCCCCCEEEEcccCc---cchHHHHHHHHHhccCCcEEEEEecCCc-------ccccccCCCCCCCCCCcceeeEeeeeC
Q 023526 11 LSESCSNLILPALSI---GNVGQLAVDLLVSSTGAETVGYLDDQFV-------LPCVGNDAYRPSPRGDLALPLQAYESS 80 (281)
Q Consensus 11 ~~~~~~tLI~p~~s~---GnVgqLA~DlLI~sl~~~~vG~l~s~~l-------~P~vg~~~~~~~~~~~l~tp~evY~~~ 80 (281)
..+++.+||.+|+|. |+||.+|++||+++|++++||.||++.+ |++.-.++- -.+.-..+++||..+
T Consensus 24 ~~l~~pvLI~af~G~~DAG~vg~~A~~hLi~~l~~~~va~~d~d~l~Dyr~~RP~v~~~~d~---~~~~~~P~~~ly~~~ 100 (325)
T 3e35_A 24 QESAGLVMLYHFDGYIDAGETGDQIVDQVLDSLPHQVVARFDHDRLVDYRARRPLLTFKRDT---WSDYEEPTIEVRLVQ 100 (325)
T ss_dssp HCTTCEEEEEEEESSCCGGGHHHHHHHHHHHHSCEEEEEEECHHHHSCTTTSCCCEEEETTE---EEEECCCCCEEEEEE
T ss_pred cccCCCEEEEeCCCCCccCHHHHHHHHHHHHHcCCeEEEEEeccccccccCCCCcEEEEcCc---ceeeecCCeEEEEec
Confidence 356899999999996 9999999999999999999999999988 444421110 011234799999853
Q ss_pred ---CCcEEEEEEccCCCchhHHHHHHHHHHHHHHhCCCeEEEEeccCccccccccCCCCC-eEEEEecCCCCCchhHHHh
Q 023526 81 ---SSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGRLQRIDMSSGP-QIYYLSSTSVDGTDDYCEQ 156 (281)
Q Consensus 81 ---~~~i~vlq~rspi~~~~~~~f~~~l~~wi~~~~~~~vi~Lss~~a~~r~~~~~~~~~-~~~~~~s~~~~~~~~~~~~ 156 (281)
++.++++.. |.+....++|+++|++|+++.|+++||.|+|+.+..... .| .++..++. . +.+++
T Consensus 101 d~~~~~~llL~G--~eP~~~w~~f~~avl~~a~~~gV~~vv~Lggip~~vpHt-----RP~~V~~~at~--~---el~~~ 168 (325)
T 3e35_A 101 DATGAPFLFLSG--PEPDVEWERFAAAVGQIVERLGVRLSVSFHGIPMGVPHT-----RPVGITPHGSR--T---DLVPG 168 (325)
T ss_dssp CTTCCEEEEEEE--ECCSSCHHHHHHHHHHHHHHTTEEEEEEEEEEEESCCTT-----SCCCEEEEESC--G---GGCC-
T ss_pred CCCCCcEEEEEC--CCCcchHHHHHHHHHHHHHHcCCCEEEEEeCccCCCCCC-----CCceeEEEeCC--H---HHHHh
Confidence 467777775 667777899999999999999999999999998765322 24 47877764 1 11222
Q ss_pred hCcccccccCccccchhhhhhcccCCCCCCCCCCCcccccccccCCCCC---hHHHHHHHHhcCCceEEEEEEeccC-CC
Q 023526 157 LGWKRLQEYNPAQRGWKYLSSLAEGDVGDENNFTFEDDLEEEDYYPSLP---FAALFSCFKARGLKVTCLLCYCSEG-DN 232 (281)
Q Consensus 157 L~~~~~e~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lP---~~~L~~~~~~~~i~~~~L~~f~~EG-DN 232 (281)
++.. . .. ..+| .+.|..+|.++|++.++|...+-.= -+
T Consensus 169 ~~~~----~--------------------------------~~--~~gp~Gi~glL~~~~~~~Gi~a~~l~~~vPhYla~ 210 (325)
T 3e35_A 169 HRSP----F--------------------------------EE--AQVPGSAEALVEYRLAQAGHDVLGVAAHVPHYVAR 210 (325)
T ss_dssp --------C--------------------------------CC--CCCCCCHHHHHHHHHHHTTCCEEEEEEEEEGGGTT
T ss_pred hccc----c--------------------------------cc--CCCcccHHHHHHHHHHHCCCCeEEEEEEcCccccC
Confidence 1100 0 00 1233 3357788999999999999988420 13
Q ss_pred HHHHHHHHH---HHHHHhccC
Q 023526 233 MADAFNLAD---AACKFLRLN 250 (281)
Q Consensus 233 ~~DA~~lA~---~l~~~L~~~ 250 (281)
.||+.+.+. .|++++++.
T Consensus 211 ~p~P~AA~alL~~L~~~~gl~ 231 (325)
T 3e35_A 211 SAYPDAALTVLEAITAATGLV 231 (325)
T ss_dssp SCCHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHHHHHHHhCCC
Confidence 455555444 577788775
No 7
>3abd_A Mitotic spindle assembly checkpoint protein MAD2B; horma, DNA replication, translesion DNA SYNT cell cycle, cell division, mitosis, DNA damage; HET: DNA; 1.90A {Homo sapiens} PDB: 3abe_C*
Probab=53.12 E-value=7.2 Score=33.85 Aligned_cols=52 Identities=10% Similarity=0.202 Sum_probs=41.5
Q ss_pred eeEeeee-CCCcEEEEEEccCCCchhHHHHHHHHHHHHHHhCCCeEEE-EeccC
Q 023526 73 PLQAYES-SSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVV-LSALD 124 (281)
Q Consensus 73 p~evY~~-~~~~i~vlq~rspi~~~~~~~f~~~l~~wi~~~~~~~vi~-Lss~~ 124 (281)
|-|.|.. +.-++.|.|+|-|-+..+..+....+.+|+.+..+++|++ +.+.+
T Consensus 54 P~e~F~~~rky~l~v~~sr~p~l~~YI~~~l~~v~~~L~~g~v~klvlvI~~~~ 107 (227)
T 3abd_A 54 PVGIFQKRKKYNVPVQMSCHPELNQYIQDTLHCVKPLLEKNDVEKVVVVILDKE 107 (227)
T ss_dssp CGGGEEEEEETTEEEEEECCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECTT
T ss_pred ChHHhhHHHhcCCceEEecCHHHHHHHHHHHHHHHHHHHhCceeEEEEEEEcCC
Confidence 4444432 2357999999999999999999999999999999988875 45543
No 8
>4aez_B MAD2, mitotic spindle checkpoint component MAD2; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=51.25 E-value=8.2 Score=33.00 Aligned_cols=44 Identities=14% Similarity=0.219 Sum_probs=37.7
Q ss_pred CCcEEEEEEccCCCchhHHHHHHHHHHHHHHhCCCeEEE-EeccC
Q 023526 81 SSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVV-LSALD 124 (281)
Q Consensus 81 ~~~i~vlq~rspi~~~~~~~f~~~l~~wi~~~~~~~vi~-Lss~~ 124 (281)
.-++.+.++|-|-+..+.......+.+|+.+..++++++ +.+.+
T Consensus 47 ky~l~v~~sr~p~l~~YI~~~l~~v~~wL~~g~v~klvlvI~~~~ 91 (203)
T 4aez_B 47 KYGLNMLVSVDEEVKTYIRKIVSQLHKWMFAKKIQKLILVITSKC 91 (203)
T ss_dssp ETTEEEEEECCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEETT
T ss_pred hcCccceeecCHHHHHHHHHHHHHHHHHHHhCCceEEEEEEEcCC
Confidence 357999999999999999999999999999999988774 45543
No 9
>2vfx_A Mitotic spindle assembly checkpoint protein MAD2A; CDC2, nucleus, mitosis, anaphase, cell cycle, CE division, spindle checkpoint; HET: PE4 PE3; 1.95A {Homo sapiens} PDB: 2qyf_A 2v64_A 1s2h_A 1go4_A 3gmh_A 1klq_A 2v64_D 1duj_A
Probab=50.92 E-value=8.3 Score=32.88 Aligned_cols=52 Identities=21% Similarity=0.352 Sum_probs=40.8
Q ss_pred eeEeeee-CCCcEEEEEEccCCCchhHHHHHHHHHHHHHHhCCCeEEEE-eccC
Q 023526 73 PLQAYES-SSSGLTLIQQRSPVVKGMMVEYAKNLADFAAASGNKHVVVL-SALD 124 (281)
Q Consensus 73 p~evY~~-~~~~i~vlq~rspi~~~~~~~f~~~l~~wi~~~~~~~vi~L-ss~~ 124 (281)
|-|.|.. +.-++.|.|+|-|-+..+.......+.+|+.+..++++++. .+.+
T Consensus 40 P~e~F~~~k~y~l~v~~sr~p~l~~YI~~~l~~l~~~L~~g~v~klvlvI~~~~ 93 (206)
T 2vfx_A 40 PSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWLYKSSVQKLVVVISNIE 93 (206)
T ss_dssp CGGGEEEEEETTEEEEEECCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEETT
T ss_pred ChHHhHHHHHcCceeeEecCHHHHHHHHHHHHHHHHHHHhCceeEEEEEEEeCC
Confidence 3444432 23579999999999999999999999999999999888754 5443
No 10
>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A
Probab=49.19 E-value=16 Score=34.53 Aligned_cols=37 Identities=16% Similarity=0.260 Sum_probs=30.1
Q ss_pred CCCCEEEEcccCccchHHHHHHHHHhccCCcEEEEEecC
Q 023526 13 ESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQ 51 (281)
Q Consensus 13 ~~~~tLI~p~~s~GnVgqLA~DlLI~sl~~~~vG~l~s~ 51 (281)
++|.|+ +.+|.||||+-++.++...++++-+++-|+.
T Consensus 210 l~gktv--gI~G~G~VG~~vA~~l~~~~G~kVv~~sD~~ 246 (419)
T 1gtm_A 210 LKGKTI--AIQGYGNAGYYLAKIMSEDFGMKVVAVSDSK 246 (419)
T ss_dssp STTCEE--EEECCSHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred cCCCEE--EEEcCCHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 888875 6678899999999988644999988877764
No 11
>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A
Probab=45.44 E-value=23 Score=33.43 Aligned_cols=39 Identities=26% Similarity=0.338 Sum_probs=31.6
Q ss_pred CCCCCEEEEcccCccchHHHHHHHHHhccCCcEEEEEecCC
Q 023526 12 SESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQF 52 (281)
Q Consensus 12 ~~~~~tLI~p~~s~GnVgqLA~DlLI~sl~~~~vG~l~s~~ 52 (281)
++++.+++ ..|.||||+-++.+|.+.++.+-|+-.|+..
T Consensus 206 ~l~g~~va--VqG~GnVG~~~a~~L~e~~GakvVavsD~~G 244 (415)
T 2tmg_A 206 DPKKATVA--VQGFGNVGQFAALLISQELGSKVVAVSDSRG 244 (415)
T ss_dssp CTTTCEEE--EECCSHHHHHHHHHHHHTTCCEEEEEECSSC
T ss_pred CcCCCEEE--EECCcHHHHHHHHHHHHhcCCEEEEEEeCCC
Confidence 67887764 3578999999999887658999999988873
No 12
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A
Probab=36.45 E-value=38 Score=32.21 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=30.9
Q ss_pred CCCCCEEEEcccCccchHHHHHHHHHhccCCcEEEEEecC
Q 023526 12 SESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQ 51 (281)
Q Consensus 12 ~~~~~tLI~p~~s~GnVgqLA~DlLI~sl~~~~vG~l~s~ 51 (281)
++++.++++ .|.||||+-++.+|. .++.+-|+-.|+.
T Consensus 232 ~l~g~~vaV--qGfGnVG~~~a~~L~-e~GakvVavsD~~ 268 (440)
T 3aog_A 232 QVEGARVAI--QGFGNVGNAAARAFH-DHGARVVAVQDHT 268 (440)
T ss_dssp CSTTCEEEE--ECCSHHHHHHHHHHH-HTTCEEEEEECSS
T ss_pred CccCCEEEE--eccCHHHHHHHHHHH-HCCCEEEEEEcCC
Confidence 688887764 589999999998886 5799999888886
No 13
>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E
Probab=35.91 E-value=44 Score=31.93 Aligned_cols=38 Identities=21% Similarity=0.254 Sum_probs=31.8
Q ss_pred cCCCCCEEEEcccCccchHHHHHHHHHhccCCcEEEEEecC
Q 023526 11 LSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQ 51 (281)
Q Consensus 11 ~~~~~~tLI~p~~s~GnVgqLA~DlLI~sl~~~~vG~l~s~ 51 (281)
.+++|.++++ .|.||||+-|+.+|. .++.+-|+--|+.
T Consensus 231 ~~l~Gk~vaV--QG~GnVG~~aa~~L~-e~GakvVavsD~~ 268 (450)
T 4fcc_A 231 MGFEGMRVSV--SGSGNVAQYAIEKAM-EFGARVITASDSS 268 (450)
T ss_dssp CCSTTCEEEE--ECCSHHHHHHHHHHH-HTTCEEEEEEETT
T ss_pred CCcCCCEEEE--eCCChHHHHHHHHHH-hcCCeEEEEecCC
Confidence 4688998776 489999999999986 5899999887776
No 14
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1
Probab=35.24 E-value=39 Score=31.92 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=30.9
Q ss_pred CCCCCEEEEcccCccchHHHHHHHHHhccCCcEEEEEecCC
Q 023526 12 SESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQF 52 (281)
Q Consensus 12 ~~~~~tLI~p~~s~GnVgqLA~DlLI~sl~~~~vG~l~s~~ 52 (281)
++++.++++ .|.||||+-++.+|. +++.+-|+-.|+..
T Consensus 207 ~l~gk~vaV--qG~GnVG~~aa~~L~-e~GakVVavsD~~G 244 (421)
T 1v9l_A 207 GIEGKTVAI--QGMGNVGRWTAYWLE-KMGAKVIAVSDING 244 (421)
T ss_dssp CCTTCEEEE--ECCSHHHHHHHHHHH-TTTCEEEEEECSSC
T ss_pred CcCCCEEEE--ECcCHHHHHHHHHHH-HCCCEEEEEECCCc
Confidence 678887643 578999999998775 67999999999874
No 15
>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}
Probab=34.69 E-value=43 Score=31.61 Aligned_cols=37 Identities=14% Similarity=0.166 Sum_probs=31.1
Q ss_pred CCCCCEEEEcccCccchHHHHHHHHHhccCCcEEEEEecC
Q 023526 12 SESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQ 51 (281)
Q Consensus 12 ~~~~~tLI~p~~s~GnVgqLA~DlLI~sl~~~~vG~l~s~ 51 (281)
+++|.++++ .|.||||+-++.+|. .++.+-|+-.|+.
T Consensus 215 ~l~gk~vaV--qG~GnVG~~~a~~L~-~~GakVVavsD~~ 251 (419)
T 3aoe_E 215 DLRGARVVV--QGLGQVGAAVALHAE-RLGMRVVAVATSM 251 (419)
T ss_dssp CCTTCEEEE--ECCSHHHHHHHHHHH-HTTCEEEEEEETT
T ss_pred CccCCEEEE--ECcCHHHHHHHHHHH-HCCCEEEEEEcCC
Confidence 688887653 679999999999886 5799999988886
No 16
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=33.85 E-value=2.1e+02 Score=23.84 Aligned_cols=98 Identities=15% Similarity=0.020 Sum_probs=54.1
Q ss_pred CCEEEEcccCccchHHHHHHHHHhccCCcEEEEEecCCc-ccccccC-CCCCCCCCCcceeeEeeeeCCCcEEEEEEccC
Q 023526 15 CSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQFV-LPCVGND-AYRPSPRGDLALPLQAYESSSSGLTLIQQRSP 92 (281)
Q Consensus 15 ~~tLI~p~~s~GnVgqLA~DlLI~sl~~~~vG~l~s~~l-~P~vg~~-~~~~~~~~~l~tp~evY~~~~~~i~vlq~rsp 92 (281)
..+||+| + |.+|+-.+..|+.. +.+-++...++.- ..+.... .+. .+.+.. ++ .. +-++ |+..-.+
T Consensus 6 ~~ilVtG--a-G~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~---~~D~~d-~~-~~--~~d~-vi~~a~~ 73 (286)
T 3ius_A 6 GTLLSFG--H-GYTARVLSRALAPQ-GWRIIGTSRNPDQMEAIRASGAEPL---LWPGEE-PS-LD--GVTH-LLISTAP 73 (286)
T ss_dssp CEEEEET--C-CHHHHHHHHHHGGG-TCEEEEEESCGGGHHHHHHTTEEEE---ESSSSC-CC-CT--TCCE-EEECCCC
T ss_pred CcEEEEC--C-cHHHHHHHHHHHHC-CCEEEEEEcChhhhhhHhhCCCeEE---Eecccc-cc-cC--CCCE-EEECCCc
Confidence 4689998 5 99999999999875 6665555544311 1000000 000 001111 11 11 2222 3333333
Q ss_pred CCchhHHHHHHHHHHHHHH--hCCCeEEEEeccCcc
Q 023526 93 VVKGMMVEYAKNLADFAAA--SGNKHVVVLSALDFG 126 (281)
Q Consensus 93 i~~~~~~~f~~~l~~wi~~--~~~~~vi~Lss~~a~ 126 (281)
.... ....+.+++.+++ .+++++|++||....
T Consensus 74 ~~~~--~~~~~~l~~a~~~~~~~~~~~v~~Ss~~vy 107 (286)
T 3ius_A 74 DSGG--DPVLAALGDQIAARAAQFRWVGYLSTTAVY 107 (286)
T ss_dssp BTTB--CHHHHHHHHHHHHTGGGCSEEEEEEEGGGG
T ss_pred cccc--cHHHHHHHHHHHhhcCCceEEEEeecceec
Confidence 2222 3456789999998 789999999997653
No 17
>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*
Probab=33.74 E-value=52 Score=31.88 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=31.0
Q ss_pred ccCCCCCEEEEcccCccchHHHHHHHHHhccCCcEEEEEecC
Q 023526 10 HLSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQ 51 (281)
Q Consensus 10 ~~~~~~~tLI~p~~s~GnVgqLA~DlLI~sl~~~~vG~l~s~ 51 (281)
+.+++|.++++ .|.||||+-|+.+|. .++.+-|+--|+.
T Consensus 239 ~~~l~g~tVaV--QG~GNVG~~aa~~L~-e~GakVVavsDs~ 277 (501)
T 3mw9_A 239 TPGFGDKTFVV--QGFGNVGLHSMRYLH-RFGAKCITVGESD 277 (501)
T ss_dssp CSSSTTCEEEE--ECCSHHHHHHHHHHH-HTTCEEEEEECSS
T ss_pred CCCcCCCEEEE--ECCCHHHHHHHHHHH-HCCCEEEEEEcCC
Confidence 34688888654 468999999999996 5799988877765
No 18
>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}
Probab=33.41 E-value=25 Score=33.23 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=29.3
Q ss_pred CCCCCEEEEcccCccchHHHHHHHHHhccCCcEEEEEecC
Q 023526 12 SESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQ 51 (281)
Q Consensus 12 ~~~~~tLI~p~~s~GnVgqLA~DlLI~sl~~~~vG~l~s~ 51 (281)
++++.++++ .|.||||+-++.+|. .++.+-|+-.|+.
T Consensus 209 ~l~g~~vaV--qG~GnVG~~~a~~L~-~~GakvVavsD~~ 245 (421)
T 2yfq_A 209 KMEDAKIAV--QGFGNVGTFTVKNIE-RQGGKVCAIAEWD 245 (421)
T ss_dssp CGGGSCEEE--ECCSHHHHHHHHHHH-HTTCCEEECCBCC
T ss_pred CccCCEEEE--ECcCHHHHHHHHHHH-HCCCEEEEEEecC
Confidence 677777653 679999999998886 5788888777765
No 19
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A
Probab=31.58 E-value=35 Score=32.29 Aligned_cols=37 Identities=22% Similarity=0.463 Sum_probs=29.9
Q ss_pred CCCCCEEEEcccCccchHHHHHHHHHhccCCcEEEEEecC
Q 023526 12 SESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQ 51 (281)
Q Consensus 12 ~~~~~tLI~p~~s~GnVgqLA~DlLI~sl~~~~vG~l~s~ 51 (281)
+++|.++++ .|.||||+-++.+|. .++.+-|+--|+.
T Consensus 218 ~l~g~~vaV--qG~GnVG~~aa~~l~-e~GakVVavsD~~ 254 (424)
T 3k92_A 218 KLQNARIII--QGFGNAGSFLAKFMH-DAGAKVIGISDAN 254 (424)
T ss_dssp CGGGCEEEE--ECCSHHHHHHHHHHH-HHTCEEEEEECSS
T ss_pred CcccCEEEE--ECCCHHHHHHHHHHH-HCCCEEEEEECCC
Confidence 678887654 556999999999885 5688888888877
No 20
>1g2o_A Purine nucleoside phosphorylase; trimer, transition-state complex, transferase; HET: IMH; 1.75A {Mycobacterium tuberculosis} SCOP: c.56.2.1 PDB: 1i80_A* 1n3i_A* 3iom_A*
Probab=31.44 E-value=1.5e+02 Score=25.92 Aligned_cols=93 Identities=20% Similarity=0.217 Sum_probs=55.3
Q ss_pred HHHHHHHHhccCC--cEEEEEecCCcccccccCCCCCCCCCCcceee----------------Eeeee--CCCcEEEEEE
Q 023526 30 QLAVDLLVSSTGA--ETVGYLDDQFVLPCVGNDAYRPSPRGDLALPL----------------QAYES--SSSGLTLIQQ 89 (281)
Q Consensus 30 qLA~DlLI~sl~~--~~vG~l~s~~l~P~vg~~~~~~~~~~~l~tp~----------------evY~~--~~~~i~vlq~ 89 (281)
+-|+++|-+..+. -+||-|--..|..+.. .. +...+.+|. ++|.+ ++++++++|-
T Consensus 13 ~~~~~~i~~~~~~~~~~igiI~GSGl~~~~~--~~---~~~~v~~py~~~p~fp~~tv~gh~~~~~~G~l~G~~V~~~~G 87 (268)
T 1g2o_A 13 RRAAQVIADRTGIGEHDVAVVLGSGWLPAVA--AL---GSPTTVLPQAELPGFVPPTAAGHAGELLSVPIGAHRVLVLAG 87 (268)
T ss_dssp HHHHHHHHHHHSCSCCSEEEEECTTCGGGSG--GG---CCCSEEEEGGGSTTCCCCCSTTCCCEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHhcCCCCCCEEEEcCCchhhhHH--hh---ccceeEeecccCCCCCCCcccCCCCeEEEEEECCEEEEEEEC
Confidence 4477888776555 3688887776665541 11 011122222 45544 4678898887
Q ss_pred ccCCCchhHHHHHHHHHHHHHHhCCCeEEEEeccCccc
Q 023526 90 RSPVVKGMMVEYAKNLADFAAASGNKHVVVLSALDFGR 127 (281)
Q Consensus 90 rspi~~~~~~~f~~~l~~wi~~~~~~~vi~Lss~~a~~ 127 (281)
|--..+++.-..+..-+.-+++.|++.||..++..+-+
T Consensus 88 ~gh~~~~~~v~~~~a~i~~l~~lGv~~iI~tgaaG~l~ 125 (268)
T 1g2o_A 88 RIHAYEGHDLRYVVHPVRAARAAGAQIMVLTNAAGGLR 125 (268)
T ss_dssp CCCGGGTCCHHHHSHHHHHHHHTTCCEEEEEEEEEECS
T ss_pred CCcCCCCCCHHHHHHHHHHHHHcCCCEEEEecceecCC
Confidence 76444433333333444667899999999887776543
No 21
>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A
Probab=31.27 E-value=45 Score=31.78 Aligned_cols=38 Identities=21% Similarity=0.140 Sum_probs=31.0
Q ss_pred cCCCCCEEEEcccCccchHHHHHHHHHhccCCcEEEEEecC
Q 023526 11 LSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQ 51 (281)
Q Consensus 11 ~~~~~~tLI~p~~s~GnVgqLA~DlLI~sl~~~~vG~l~s~ 51 (281)
.+++|.+++ ..|.||||+-++.+| ++++.+-|+-.|+.
T Consensus 226 ~~l~g~~v~--VqG~GnVG~~~a~~L-~~~GakvVavsD~~ 263 (449)
T 1bgv_A 226 DTLVGKTVA--LAGFGNVAWGAAKKL-AELGAKAVTLSGPD 263 (449)
T ss_dssp CCSTTCEEE--ECCSSHHHHHHHHHH-HHHTCEEEEEEETT
T ss_pred CCcCCCEEE--EECCCHHHHHHHHHH-HHCCCEEEEEEeCC
Confidence 478888765 457899999999777 46799999988877
No 22
>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}
Probab=27.77 E-value=38 Score=32.54 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=30.4
Q ss_pred cCCCCCEEEEcccCccchHHHHHHHHHhccCCcEEEEEecC
Q 023526 11 LSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQ 51 (281)
Q Consensus 11 ~~~~~~tLI~p~~s~GnVgqLA~DlLI~sl~~~~vG~l~s~ 51 (281)
.+++|.+++ ..|.||||+-++.+|. .++.+-|+-.|+.
T Consensus 248 ~~l~g~~va--VqG~GnVG~~~a~~L~-~~GakvVavsD~~ 285 (470)
T 2bma_A 248 IPVEKQTAV--VSGSGNVALYCVQKLL-HLNVKVLTLSDSN 285 (470)
T ss_dssp CCGGGCEEE--EECSSHHHHHHHHHHH-HTTCEECEEEETT
T ss_pred CCcCCCEEE--EECCcHHHHHHHHHHH-HCCCEEEEEEeCC
Confidence 467888764 3467999999999995 6799999888865
No 23
>1v7z_A Creatininase, creatinine amidohydrolase; Mn-activated creatininase, substrate complex; 1.60A {Pseudomonas SP} SCOP: c.125.1.1 PDB: 1j2u_A 1j2t_A 3a6d_A 3a6j_A 3a6k_A 3a6l_A 3a6g_A 3a6f_A 3a6e_A 3a6h_A 1q3k_A
Probab=27.75 E-value=55 Score=28.48 Aligned_cols=31 Identities=10% Similarity=0.154 Sum_probs=25.9
Q ss_pred CchhHHHHHHHHHHHHHHhCCCeEEEEeccC
Q 023526 94 VKGMMVEYAKNLADFAAASGNKHVVVLSALD 124 (281)
Q Consensus 94 ~~~~~~~f~~~l~~wi~~~~~~~vi~Lss~~ 124 (281)
.+.-...+..+|++.+.+.||+++|++.|-.
T Consensus 91 ~~~tl~~~l~di~~sl~~~GfrrivivNgHG 121 (260)
T 1v7z_A 91 DGATLTGTVQDIIRELARHGARRLVLMNGHY 121 (260)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCEEEEEECSG
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence 3444567889999999999999999999965
No 24
>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}
Probab=25.81 E-value=33 Score=32.81 Aligned_cols=38 Identities=24% Similarity=0.272 Sum_probs=29.4
Q ss_pred cCCCCCEEEEcccCccchHHHHHHHHHhccCCcEEEEEecC
Q 023526 11 LSESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDDQ 51 (281)
Q Consensus 11 ~~~~~~tLI~p~~s~GnVgqLA~DlLI~sl~~~~vG~l~s~ 51 (281)
.+++|.++++ .|.||||+-++.+|. .++.+-|+--|+.
T Consensus 235 ~~l~g~~VaV--QG~GnVG~~aa~~L~-e~GakvVavsD~~ 272 (456)
T 3r3j_A 235 DNLENKKCLV--SGSGNVAQYLVEKLI-EKGAIVLTMSDSN 272 (456)
T ss_dssp CCSTTCCEEE--ECCSHHHHHHHHHHH-HHTCCBCCEECSS
T ss_pred CCccCCEEEE--ECCCHHHHHHHHHHH-HCCCEEEEEECCC
Confidence 4688888663 567999999999985 4788877766654
No 25
>3lub_A Putative creatinine amidohydrolase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Bacteroides fragilis}
Probab=24.36 E-value=71 Score=27.74 Aligned_cols=32 Identities=9% Similarity=0.074 Sum_probs=26.0
Q ss_pred CchhHHHHHHHHHHHHHHhCCCeEEEEeccCc
Q 023526 94 VKGMMVEYAKNLADFAAASGNKHVVVLSALDF 125 (281)
Q Consensus 94 ~~~~~~~f~~~l~~wi~~~~~~~vi~Lss~~a 125 (281)
.+.-...+..+|++.+.+.||+++|++.|-.-
T Consensus 91 ~~~tl~~~l~di~~sl~~~G~rrlvivNgHGG 122 (254)
T 3lub_A 91 RYATQQAILEDIVSSLHVQGFRKLLILSGHGG 122 (254)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEEESCTT
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEEEeCCch
Confidence 33445678889999999999999999998753
No 26
>3no4_A Creatininase, creatinine amidohydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.00A {Nostoc punctiforme pcc 73102}
Probab=22.29 E-value=81 Score=27.77 Aligned_cols=33 Identities=6% Similarity=0.125 Sum_probs=26.9
Q ss_pred CCchhHHHHHHHHHHHHHHhCCCeEEEEeccCc
Q 023526 93 VVKGMMVEYAKNLADFAAASGNKHVVVLSALDF 125 (281)
Q Consensus 93 i~~~~~~~f~~~l~~wi~~~~~~~vi~Lss~~a 125 (281)
+.+.-...+..++++.+.+.||+++|++.|-.-
T Consensus 99 l~~~t~~~~l~di~~sl~~~G~~~iv~vNgHGG 131 (267)
T 3no4_A 99 LRPSTLIQVVRDYVTCLAKAGFSKFYFINGHGG 131 (267)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTT
T ss_pred eCHHHHHHHHHHHHHHHHHcCCCEEEEEECCcC
Confidence 344555678899999999999999999998753
No 27
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Probab=20.46 E-value=1e+02 Score=28.27 Aligned_cols=35 Identities=23% Similarity=0.327 Sum_probs=27.0
Q ss_pred CCCCCEEEEcccCccchHHHHHHHHHhccCCcEEEEEec
Q 023526 12 SESCSNLILPALSIGNVGQLAVDLLVSSTGAETVGYLDD 50 (281)
Q Consensus 12 ~~~~~tLI~p~~s~GnVgqLA~DlLI~sl~~~~vG~l~s 50 (281)
+++|.|+++ .|.||||+-++.++. .++++-| ..|.
T Consensus 172 ~L~GktV~I--~G~GnVG~~~A~~l~-~~GakVv-vsD~ 206 (355)
T 1c1d_A 172 SLDGLTVLV--QGLGAVGGSLASLAA-EAGAQLL-VADT 206 (355)
T ss_dssp CSTTCEEEE--ECCSHHHHHHHHHHH-HTTCEEE-EECS
T ss_pred CCCCCEEEE--ECcCHHHHHHHHHHH-HCCCEEE-EEeC
Confidence 688887654 478999999999874 7899776 5554
Done!