BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023527
         (281 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From
           Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion
           Channel
          Length = 137

 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 74/114 (64%), Gaps = 4/114 (3%)

Query: 160 FGNLDGSSLEKLCDVVKPAVFTERSYIIQEENPIDQMLFVLQGKLWTYTSRRVTXXXXXX 219
           F N+D   L+ +C+ +KP +FTE+SY+++E +P+++MLF+++G+L + T    T      
Sbjct: 14  FENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVT----TDGGRSG 69

Query: 220 XXXXXXXXXXDFSGEELIAWAKAGHNSSNLPISTKTIQALTKVEAFVLMAYDLK 273
                     DF G+EL+ WA    + SNLP ST+T++ALT+VEAF L+A +LK
Sbjct: 70  FYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELK 123


>pdb|3QO5|A Chain A, Crystal Structure Of The Seryl-Trna Synthetase From
           Candida Albicans
          Length = 485

 Score = 28.1 bits (61), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 113 IQSGVLDQNYFFRRYLPCFQWSLQALRLRLTFILSNKHKDPILLVEE 159
           I+ G+  QN   ++Y+ C   +L A    +  IL N  K+  L++ E
Sbjct: 383 IRCGIKQQNQQEKKYVHCLNSTLSATERTICCILENYQKEDGLVIPE 429


>pdb|3QNE|A Chain A, Candida Albicans Seryl-Trna Synthetase
 pdb|3QO7|A Chain A, Crystal Structure Of The Seryl-Trna Synthetase From
           Candida Albicans
 pdb|3QO8|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Candida
           Albicans
          Length = 485

 Score = 28.1 bits (61), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 113 IQSGVLDQNYFFRRYLPCFQWSLQALRLRLTFILSNKHKDPILLVEE 159
           I+ G+  QN   ++Y+ C   +L A    +  IL N  K+  L++ E
Sbjct: 383 IRCGIKQQNQQEKKYVHCLNSTLSATERTICCILENYQKEDGLVIPE 429


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.138    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,623,000
Number of Sequences: 62578
Number of extensions: 283443
Number of successful extensions: 719
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 710
Number of HSP's gapped (non-prelim): 8
length of query: 281
length of database: 14,973,337
effective HSP length: 98
effective length of query: 183
effective length of database: 8,840,693
effective search space: 1617846819
effective search space used: 1617846819
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)