Query 023527
Match_columns 281
No_of_seqs 324 out of 1225
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 04:44:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023527.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023527hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 1.8E-55 3.9E-60 446.4 7.6 229 5-280 205-534 (727)
2 PLN03192 Voltage-dependent pot 99.8 2E-20 4.3E-25 195.4 12.2 111 154-279 376-486 (823)
3 KOG0500 Cyclic nucleotide-gate 99.8 1.7E-19 3.7E-24 175.0 11.0 115 154-279 309-423 (536)
4 PRK09392 ftrB transcriptional 99.7 5.1E-16 1.1E-20 138.5 12.9 114 151-279 6-119 (236)
5 KOG0499 Cyclic nucleotide-gate 99.6 6E-16 1.3E-20 153.1 8.9 113 154-279 529-641 (815)
6 cd00038 CAP_ED effector domain 99.6 1.1E-14 2.3E-19 111.9 12.6 108 159-280 1-108 (115)
7 PRK11753 DNA-binding transcrip 99.6 1.1E-14 2.4E-19 127.0 14.0 106 161-279 6-111 (211)
8 smart00100 cNMP Cyclic nucleot 99.6 2.9E-14 6.3E-19 109.8 13.3 109 159-279 1-109 (120)
9 COG0664 Crp cAMP-binding prote 99.6 4.5E-14 9.7E-19 121.1 12.9 111 154-278 2-112 (214)
10 PLN02868 acyl-CoA thioesterase 99.6 3.7E-14 8.1E-19 137.8 13.8 110 151-277 7-116 (413)
11 PRK11161 fumarate/nitrate redu 99.5 5.4E-14 1.2E-18 125.2 12.7 111 154-279 15-126 (235)
12 PF00027 cNMP_binding: Cyclic 99.5 8.8E-14 1.9E-18 104.2 10.5 89 178-280 2-90 (91)
13 KOG0614 cGMP-dependent protein 99.5 5.7E-14 1.2E-18 138.0 7.7 144 120-278 235-386 (732)
14 PRK10402 DNA-binding transcrip 99.4 7.1E-13 1.5E-17 118.2 10.2 96 170-279 26-121 (226)
15 PRK09391 fixK transcriptional 99.3 7.2E-12 1.6E-16 112.2 11.0 93 170-279 33-125 (230)
16 PRK13918 CRP/FNR family transc 99.3 7.4E-12 1.6E-16 108.7 10.5 84 174-272 5-90 (202)
17 KOG1113 cAMP-dependent protein 99.3 2.1E-12 4.5E-17 121.8 4.0 132 126-277 209-347 (368)
18 TIGR03697 NtcA_cyano global ni 99.3 2.4E-11 5.3E-16 104.4 9.9 84 183-279 1-85 (193)
19 KOG0614 cGMP-dependent protein 99.2 6.2E-12 1.3E-16 123.9 3.8 113 147-278 149-261 (732)
20 COG2905 Predicted signal-trans 99.2 1.6E-10 3.4E-15 114.8 11.1 113 149-279 4-116 (610)
21 KOG1113 cAMP-dependent protein 99.1 5.9E-11 1.3E-15 112.1 6.0 103 154-275 124-226 (368)
22 KOG0501 K+-channel KCNQ [Inorg 99.0 1E-09 2.2E-14 109.3 7.0 109 154-279 550-658 (971)
23 KOG2968 Predicted esterase of 97.9 1.1E-05 2.4E-10 84.2 4.4 92 174-279 507-598 (1158)
24 PF04831 Popeye: Popeye protei 97.1 0.0089 1.9E-07 51.1 11.5 104 162-279 14-119 (153)
25 KOG2968 Predicted esterase of 97.1 0.00066 1.4E-08 71.4 5.4 103 171-280 111-213 (1158)
26 KOG3542 cAMP-regulated guanine 97.0 0.0012 2.5E-08 67.9 5.6 107 154-279 283-391 (1283)
27 PRK11832 putative DNA-binding 95.8 0.15 3.2E-06 45.9 11.6 95 167-279 14-109 (207)
28 PF07883 Cupin_2: Cupin domain 92.4 0.28 6E-06 34.9 4.6 45 178-233 3-48 (71)
29 KOG3542 cAMP-regulated guanine 91.2 0.24 5.2E-06 51.6 4.2 88 154-268 39-126 (1283)
30 PRK13290 ectC L-ectoine syntha 85.6 5.9 0.00013 32.6 8.2 49 176-233 38-86 (125)
31 PF05899 Cupin_3: Protein of u 84.1 1.4 2.9E-05 32.8 3.5 42 180-233 14-55 (74)
32 COG1917 Uncharacterized conser 82.5 3.9 8.4E-05 33.1 5.9 50 175-235 45-95 (131)
33 smart00835 Cupin_1 Cupin. This 79.2 7 0.00015 32.4 6.4 55 175-234 32-87 (146)
34 PF12973 Cupin_7: ChrR Cupin-l 72.9 18 0.0004 27.4 6.8 64 174-266 25-88 (91)
35 COG0662 {ManC} Mannose-6-phosp 70.0 14 0.00029 30.1 5.8 48 174-232 37-85 (127)
36 TIGR03037 anthran_nbaC 3-hydro 68.9 13 0.00027 32.3 5.5 39 187-233 43-81 (159)
37 PRK13264 3-hydroxyanthranilate 65.8 12 0.00025 33.0 4.8 60 191-271 52-111 (177)
38 PRK11171 hypothetical protein; 62.2 22 0.00049 32.8 6.3 49 174-233 185-234 (266)
39 PRK11171 hypothetical protein; 57.9 25 0.00054 32.5 5.8 47 176-233 64-112 (266)
40 PF07697 7TMR-HDED: 7TM-HD ext 56.2 7.1 0.00015 34.0 1.8 33 163-195 174-208 (222)
41 COG3718 IolB Uncharacterized e 54.7 51 0.0011 30.6 7.0 36 175-210 31-66 (270)
42 TIGR03404 bicupin_oxalic bicup 52.7 40 0.00087 32.8 6.5 51 177-233 71-121 (367)
43 COG3837 Uncharacterized conser 51.3 21 0.00046 30.9 3.8 39 186-235 57-95 (161)
44 PF00190 Cupin_1: Cupin; Inte 50.2 47 0.001 27.3 5.8 56 175-234 36-96 (144)
45 TIGR03404 bicupin_oxalic bicup 48.4 51 0.0011 32.1 6.5 51 176-232 248-299 (367)
46 PRK09943 DNA-binding transcrip 47.1 32 0.0007 29.5 4.5 43 179-232 113-156 (185)
47 TIGR03214 ura-cupin putative a 46.5 45 0.00098 30.7 5.5 50 172-232 178-228 (260)
48 TIGR03214 ura-cupin putative a 43.8 35 0.00076 31.4 4.4 46 177-233 62-109 (260)
49 TIGR02451 anti_sig_ChrR anti-s 41.1 61 0.0013 29.0 5.4 73 173-274 127-201 (215)
50 PF06249 EutQ: Ethanolamine ut 41.1 33 0.00072 29.5 3.5 30 192-232 94-123 (152)
51 COG3450 Predicted enzyme of th 39.2 60 0.0013 26.6 4.6 44 178-233 50-93 (116)
52 PRK04190 glucose-6-phosphate i 38.9 1.5E+02 0.0033 26.2 7.5 51 177-233 72-131 (191)
53 COG3257 GlxB Uncharacterized p 38.5 1.1E+02 0.0023 28.3 6.4 32 190-232 80-111 (264)
54 PRK15457 ethanolamine utilizat 35.8 53 0.0011 30.2 4.1 29 193-232 175-203 (233)
55 PF12852 Cupin_6: Cupin 33.4 1.4E+02 0.0029 25.4 6.2 44 180-232 22-65 (186)
56 PF02311 AraC_binding: AraC-li 32.7 70 0.0015 24.4 4.0 34 188-232 18-51 (136)
57 TIGR02272 gentisate_1_2 gentis 31.0 1.5E+02 0.0033 28.6 6.6 78 178-280 255-332 (335)
58 TIGR01479 GMP_PMI mannose-1-ph 30.9 1.1E+02 0.0024 30.5 5.9 45 178-233 381-426 (468)
59 PF11699 CENP-C_C: Mif2/CENP-C 30.8 73 0.0016 24.5 3.6 28 195-233 35-62 (85)
60 PRK15460 cpsB mannose-1-phosph 29.1 1.2E+02 0.0026 30.6 5.8 46 176-232 388-434 (478)
61 TIGR02272 gentisate_1_2 gentis 24.7 1.1E+02 0.0024 29.6 4.4 47 178-234 86-132 (335)
62 PLN00212 glutelin; Provisional 22.1 1.4E+02 0.0031 30.4 4.8 36 193-233 369-404 (493)
63 PF06052 3-HAO: 3-hydroxyanthr 20.9 1.9E+02 0.0041 24.9 4.6 61 191-272 51-111 (151)
64 COG4766 EutQ Ethanolamine util 20.0 1.6E+02 0.0034 25.7 3.9 29 193-232 118-146 (176)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-55 Score=446.45 Aligned_cols=229 Identities=33% Similarity=0.545 Sum_probs=204.2
Q ss_pred eeehhhhheeeccceeeceeeeeehhhHhHHHH-HHHHhhhcccceeeeeechhhHHHHHHHHcCCCCCCcccceecCCC
Q 023527 5 LVQHGLKVIRLAKLITEWKNSYNLNKWANLTFN-FGYLQAANVFGSLWYFFAVQRKAECWKKACTDFTRCDFLPLHCDDS 83 (281)
Q Consensus 5 l~~~~~~~~~l~~~~~~~~g~~~~taw~g~~~n-~~y~lashv~g~~wyl~~~~r~~~c~~~~c~~~~~c~~~~~~c~~~ 83 (281)
.+|||+|++|++.|++|.+|+++||||||+|+| ++||||+|++|+|||++|+||++.||+++|-....|. +++|.+
T Consensus 205 rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~--~~~~~~- 281 (727)
T KOG0498|consen 205 RLPRLRRVIPLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGSLGR--LLSCYN- 281 (727)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccc--ccccCc-
Confidence 356788889999999999999999999999999 9999999999999999999999999999843222222 455533
Q ss_pred CCcccccccccccccCCCCCCCcchhhhhhhcCccccccchhhhhheehhhhhhhhHH----------------------
Q 023527 84 LTNYTFFSDFCSTKTQNATIYDFGIFRDAIQSGVLDQNYFFRRYLPCFQWSLQALRLR---------------------- 141 (281)
Q Consensus 84 ~~~~~~~~~~c~~~~~~~~~f~~gi~~~a~~~~v~~~~~~~~~~~~~~~Wg~~~~st~---------------------- 141 (281)
..|+||||.+|+ ||+||+|||++++||+
T Consensus 282 ------------------~~~~fg~~s~~~------------kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~ 331 (727)
T KOG0498|consen 282 ------------------LSFTFGIYSLAL------------KYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLF 331 (727)
T ss_pred ------------------ccccccchhHHH------------HHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHH
Confidence 339999999998 9999999999999999
Q ss_pred ----HHHH-------------------------------------------------------------Hhhcchhh---
Q 023527 142 ----LTFI-------------------------------------------------------------LSNKHKDP--- 153 (281)
Q Consensus 142 ----f~~l-------------------------------------------------------------l~~lp~dl--- 153 (281)
||+| +++||++|
T Consensus 332 GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~d 411 (727)
T KOG0498|consen 332 GLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRD 411 (727)
T ss_pred hHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHH
Confidence 3333 78899887
Q ss_pred ---------hhcCCCCCCCCHHHHHHHhhcceeEEecCCCeEEccCCCcCeEEEEEEcEEEEEEeccccccCCCcceee-
Q 023527 154 ---------ILLVEEFGNLDGSSLEKLCDVVKPAVFTERSYIIQEENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLN- 223 (281)
Q Consensus 154 ---------Lr~vplF~~L~e~~L~~I~~~l~~~~y~kGe~I~rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~- 223 (281)
|++||+|++||++.|++||+++|+..|+|||+|++|||++++||||++|.+++.+.+ || ++.+
T Consensus 412 I~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~-----~g--~~~~~ 484 (727)
T KOG0498|consen 412 IKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTD-----GG--GFFVV 484 (727)
T ss_pred HHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEcc-----CC--ceEEE
Confidence 999999999999999999999999999999999999999999999999999999988 76 4556
Q ss_pred eeecCCceechhhHHHhhcCCCCCCCCCcceEEEEcccEEEEEEcHHHHHHHHhhhc
Q 023527 224 NHLEGGDFSGEELIAWAKAGHNSSNLPISTKTIQALTKVEAFVLMAYDLKQVLLNID 280 (281)
Q Consensus 224 ~~L~~GDffGE~lL~w~l~~~s~~~~p~s~~TV~Altdvell~L~~edL~~l~~~f~ 280 (281)
..|+|||+|||++++|+++ .| +++||+|+|.||++.|+++||++|+++|+
T Consensus 485 ~~L~~Gd~~GeEl~~~~~~------~p-~t~TVralt~~el~~L~~~dL~~V~~~f~ 534 (727)
T KOG0498|consen 485 AILGPGDFFGEELLTWCLD------LP-QTRTVRALTYCELFRLSADDLKEVLQQFR 534 (727)
T ss_pred EEecCCCccchHHHHHHhc------CC-CCceeehhhhhhHHhccHHHHHHHHHHhH
Confidence 9999999999999999984 24 48999999999999999999999999996
No 2
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.83 E-value=2e-20 Score=195.41 Aligned_cols=111 Identities=18% Similarity=0.155 Sum_probs=99.6
Q ss_pred hhcCCCCCCCCHHHHHHHhhcceeEEecCCCeEEccCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceec
Q 023527 154 ILLVEEFGNLDGSSLEKLCDVVKPAVFTERSYIIQEENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSG 233 (281)
Q Consensus 154 Lr~vplF~~L~e~~L~~I~~~l~~~~y~kGe~I~rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffG 233 (281)
++++|+|++++++.+.+|+.+++++.|.|||.|++|||++++||||++|+|++...+ +|++..+ ..+++||+||
T Consensus 376 l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~-----~~~e~~l-~~l~~Gd~FG 449 (823)
T PLN03192 376 VEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSE-----GEKERVV-GTLGCGDIFG 449 (823)
T ss_pred HhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEec-----CCcceee-EEccCCCEec
Confidence 789999999999999999999999999999999999999999999999999998766 6666555 7899999999
Q ss_pred hhhHHHhhcCCCCCCCCCcceEEEEcccEEEEEEcHHHHHHHHhhh
Q 023527 234 EELIAWAKAGHNSSNLPISTKTIQALTKVEAFVLMAYDLKQVLLNI 279 (281)
Q Consensus 234 E~lL~w~l~~~s~~~~p~s~~TV~Altdvell~L~~edL~~l~~~f 279 (281)
|..+ +. + .++++|++|.++|+++.|++++|.++++++
T Consensus 450 E~~~---l~-----~-~p~~~t~ra~~~s~ll~l~~~~f~~ll~~~ 486 (823)
T PLN03192 450 EVGA---LC-----C-RPQSFTFRTKTLSQLLRLKTSTLIEAMQTR 486 (823)
T ss_pred chHH---hc-----C-CCCCCeEEEcccEEEEEEEHHHHHHHHHHh
Confidence 9865 21 2 246789999999999999999999999876
No 3
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.80 E-value=1.7e-19 Score=174.98 Aligned_cols=115 Identities=24% Similarity=0.264 Sum_probs=101.8
Q ss_pred hhcCCCCCCCCHHHHHHHhhcceeEEecCCCeEEccCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceec
Q 023527 154 ILLVEEFGNLDGSSLEKLCDVVKPAVFTERSYIIQEENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSG 233 (281)
Q Consensus 154 Lr~vplF~~L~e~~L~~I~~~l~~~~y~kGe~I~rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffG 233 (281)
|+||++|+.-++..|.++.-.++++.|.||++|.|+||.+.+||||.+|++++...| |+ +.+ ..|++|++||
T Consensus 309 LkkV~iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~dD-----g~-t~~--~~L~~G~~FG 380 (536)
T KOG0500|consen 309 LKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVADD-----GV-TVF--VTLKAGSVFG 380 (536)
T ss_pred HHhhhHHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEecC-----Cc-EEE--EEecCCceee
Confidence 999999999999999999999999999999999999999999999999999998766 54 334 7899999999
Q ss_pred hhhHHHhhcCCCCCCCCCcceEEEEcccEEEEEEcHHHHHHHHhhh
Q 023527 234 EELIAWAKAGHNSSNLPISTKTIQALTKVEAFVLMAYDLKQVLLNI 279 (281)
Q Consensus 234 E~lL~w~l~~~s~~~~p~s~~TV~Altdvell~L~~edL~~l~~~f 279 (281)
|..+ +.-+...+..+++++|+.+.-++++.|+++|+.+++++|
T Consensus 381 EisI---lni~g~~~gNRRtanvrSvGYSDlfvLskdDl~~aL~eY 423 (536)
T KOG0500|consen 381 EISI---LNIKGNKNGNRRTANVRSVGYSDLFVLSKDDLWEALSEY 423 (536)
T ss_pred eeEE---EEEcCcccCCcceeeeeeeccceeeEeeHHHHHHHHHhC
Confidence 9865 222222344578999999999999999999999999988
No 4
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.68 E-value=5.1e-16 Score=138.49 Aligned_cols=114 Identities=15% Similarity=0.132 Sum_probs=99.8
Q ss_pred hhhhhcCCCCCCCCHHHHHHHhhcceeEEecCCCeEEccCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCc
Q 023527 151 KDPILLVEEFGNLDGSSLEKLCDVVKPAVFTERSYIIQEENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGD 230 (281)
Q Consensus 151 ~dlLr~vplF~~L~e~~L~~I~~~l~~~~y~kGe~I~rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GD 230 (281)
.+.|++.|+|+.|++++++.+.+..+.+.|++|++|+++||+.+++|+|++|.++++... +|++..+ ..+.+||
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~-----~~~~~~i-~~~~~g~ 79 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASS-----QDRETTL-AILRPVS 79 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcC-----CCceEEE-EEeCCCc
Confidence 346899999999999999999999999999999999999999999999999999998766 4455444 8899999
Q ss_pred eechhhHHHhhcCCCCCCCCCcceEEEEcccEEEEEEcHHHHHHHHhhh
Q 023527 231 FSGEELIAWAKAGHNSSNLPISTKTIQALTKVEAFVLMAYDLKQVLLNI 279 (281)
Q Consensus 231 ffGE~lL~w~l~~~s~~~~p~s~~TV~Altdvell~L~~edL~~l~~~f 279 (281)
+||+..+ +. . .++.++++|+++|+++.+++++|++++.++
T Consensus 80 ~~g~~~~---~~-----~-~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~ 119 (236)
T PRK09392 80 TFILAAV---VL-----D-APYLMSARTLTRSRVLMIPAELVREAMSED 119 (236)
T ss_pred hhhhHHH---hC-----C-CCCceEEEEcCceEEEEEeHHHHHHHHHHC
Confidence 9999754 22 2 247789999999999999999999998765
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.63 E-value=6e-16 Score=153.06 Aligned_cols=113 Identities=15% Similarity=0.192 Sum_probs=101.4
Q ss_pred hhcCCCCCCCCHHHHHHHhhcceeEEecCCCeEEccCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceec
Q 023527 154 ILLVEEFGNLDGSSLEKLCDVVKPAVFTERSYIIQEENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSG 233 (281)
Q Consensus 154 Lr~vplF~~L~e~~L~~I~~~l~~~~y~kGe~I~rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffG 233 (281)
|.||.+|++.|.+.+..+..+++++.|-+|++|.+.||.+.+||||..|+|++.... +|...+ .+|.+|.+||
T Consensus 529 lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGGp-----~~~~Vl--~tL~~GsVFG 601 (815)
T KOG0499|consen 529 LSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGGP-----DGTKVL--VTLKAGSVFG 601 (815)
T ss_pred hhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEecCC-----CCCEEE--EEecccceee
Confidence 999999999999999999999999999999999999999999999999999998766 555433 7999999999
Q ss_pred hhhHHHhhcCCCCCCCCCcceEEEEcccEEEEEEcHHHHHHHHhhh
Q 023527 234 EELIAWAKAGHNSSNLPISTKTIQALTKVEAFVLMAYDLKQVLLNI 279 (281)
Q Consensus 234 E~lL~w~l~~~s~~~~p~s~~TV~Altdvell~L~~edL~~l~~~f 279 (281)
|..| | ......+++++|+|-.-+.+|+|+++||.+++.+|
T Consensus 602 EISL---L---aigG~nRRTAnV~a~Gf~nLfvL~KkdLneil~~Y 641 (815)
T KOG0499|consen 602 EISL---L---AIGGGNRRTANVVAHGFANLFVLDKKDLNEILVHY 641 (815)
T ss_pred eeee---e---eecCCCccchhhhhcccceeeEecHhHHHHHHHhC
Confidence 9966 2 22334578999999999999999999999999887
No 6
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.61 E-value=1.1e-14 Score=111.93 Aligned_cols=108 Identities=28% Similarity=0.402 Sum_probs=94.1
Q ss_pred CCCCCCHHHHHHHhhcceeEEecCCCeEEccCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceechhhHH
Q 023527 159 EFGNLDGSSLEKLCDVVKPAVFTERSYIIQEENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSGEELIA 238 (281)
Q Consensus 159 lF~~L~e~~L~~I~~~l~~~~y~kGe~I~rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffGE~lL~ 238 (281)
+|+.+++++++.+++.++...|++|++|+.+|++.+++|+|.+|.+++...+ .+|++... ..+.+|+++|+..+
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~----~~g~~~~~-~~~~~g~~~g~~~~- 74 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLD----EDGREQIV-GFLGPGDLFGELAL- 74 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEEC----CCCcEEEE-EecCCccCcChHHH-
Confidence 5899999999999999999999999999999999999999999999998876 35665555 78999999999754
Q ss_pred HhhcCCCCCCCCCcceEEEEcccEEEEEEcHHHHHHHHhhhc
Q 023527 239 WAKAGHNSSNLPISTKTIQALTKVEAFVLMAYDLKQVLLNID 280 (281)
Q Consensus 239 w~l~~~s~~~~p~s~~TV~Altdvell~L~~edL~~l~~~f~ 280 (281)
+. ..++..+++|.++|+++.++.++|.+++.++.
T Consensus 75 --~~------~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~ 108 (115)
T cd00038 75 --LG------NGPRSATVRALTDSELLVLPRSDFRRLLQEYP 108 (115)
T ss_pred --hc------CCCCCceEEEcCceEEEEEeHHHHHHHHHHCc
Confidence 21 13467899999999999999999999988753
No 7
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.61 E-value=1.1e-14 Score=127.04 Aligned_cols=106 Identities=15% Similarity=0.164 Sum_probs=92.0
Q ss_pred CCCCHHHHHHHhhcceeEEecCCCeEEccCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceechhhHHHh
Q 023527 161 GNLDGSSLEKLCDVVKPAVFTERSYIIQEENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSGEELIAWA 240 (281)
Q Consensus 161 ~~L~e~~L~~I~~~l~~~~y~kGe~I~rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffGE~lL~w~ 240 (281)
+.+++++++++.+.++.+.|+||++|+++||+.+++|||++|.++++..+ .+|++..+ ..++|||+||+..+
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~----~~g~~~~~-~~~~~g~~~g~~~~--- 77 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKD----EEGKEMIL-SYLNQGDFIGELGL--- 77 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEEC----CCCCEEEE-EEcCCCCEEeehhh---
Confidence 56899999999999999999999999999999999999999999998776 36676555 78999999999754
Q ss_pred hcCCCCCCCCCcceEEEEcccEEEEEEcHHHHHHHHhhh
Q 023527 241 KAGHNSSNLPISTKTIQALTKVEAFVLMAYDLKQVLLNI 279 (281)
Q Consensus 241 l~~~s~~~~p~s~~TV~Altdvell~L~~edL~~l~~~f 279 (281)
+. +.+++..+++|.++|+++.+++++|.+++.++
T Consensus 78 ~~-----~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~ 111 (211)
T PRK11753 78 FE-----EGQERSAWVRAKTACEVAEISYKKFRQLIQVN 111 (211)
T ss_pred cc-----CCCCceEEEEEcCcEEEEEEcHHHHHHHHHHC
Confidence 21 22356789999999999999999999998764
No 8
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.59 E-value=2.9e-14 Score=109.76 Aligned_cols=109 Identities=25% Similarity=0.330 Sum_probs=92.7
Q ss_pred CCCCCCHHHHHHHhhcceeEEecCCCeEEccCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceechhhHH
Q 023527 159 EFGNLDGSSLEKLCDVVKPAVFTERSYIIQEENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSGEELIA 238 (281)
Q Consensus 159 lF~~L~e~~L~~I~~~l~~~~y~kGe~I~rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffGE~lL~ 238 (281)
+|+++++++++.+++.++.+.|++|++|+++||+.+++|||++|.+++...+ .+|++..+ ..+.+||+||+..+
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~----~~g~~~~~-~~~~~g~~~g~~~~- 74 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVL----EDGREQIL-GILGPGDFFGELAL- 74 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEEC----CCCceEEE-EeecCCceechhhh-
Confidence 5899999999999999999999999999999999999999999999999876 25565444 78999999999754
Q ss_pred HhhcCCCCCCCCCcceEEEEcccEEEEEEcHHHHHHHHhhh
Q 023527 239 WAKAGHNSSNLPISTKTIQALTKVEAFVLMAYDLKQVLLNI 279 (281)
Q Consensus 239 w~l~~~s~~~~p~s~~TV~Altdvell~L~~edL~~l~~~f 279 (281)
+. ....++..+++|.+++++..++.+++.....++
T Consensus 75 --~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 109 (120)
T smart00100 75 --LT----NSRRAASATAVALELATLLRIDFRDFLQLLQEN 109 (120)
T ss_pred --cc----CCCcccceEEEEEeeEEEEccCHHHHHHHHHHh
Confidence 21 111246689999999999999999999888765
No 9
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.56 E-value=4.5e-14 Score=121.13 Aligned_cols=111 Identities=21% Similarity=0.225 Sum_probs=97.0
Q ss_pred hhcCCCCCCCCHHHHHHHhhcceeEEecCCCeEEccCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceec
Q 023527 154 ILLVEEFGNLDGSSLEKLCDVVKPAVFTERSYIIQEENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSG 233 (281)
Q Consensus 154 Lr~vplF~~L~e~~L~~I~~~l~~~~y~kGe~I~rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffG 233 (281)
+++.+.|+.++++.+..+......+.+++|++|+++||+++.+|+|.+|.++++..+ .+|++.++ ..++|||+||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~----~~G~~~~~-~~~~~g~~fg 76 (214)
T COG0664 2 LKENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANT----EDGREIIL-GFLGPGDFFG 76 (214)
T ss_pred cccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEEC----CCCcEEEE-EEecCCchhh
Confidence 356788888899988888899999999999999999999999999999999999887 36777666 7899999999
Q ss_pred hhhHHHhhcCCCCCCCCCcceEEEEcccEEEEEEcHHHHHHHHhh
Q 023527 234 EELIAWAKAGHNSSNLPISTKTIQALTKVEAFVLMAYDLKQVLLN 278 (281)
Q Consensus 234 E~lL~w~l~~~s~~~~p~s~~TV~Altdvell~L~~edL~~l~~~ 278 (281)
|..+ +. + .+++.+++|+++++++.+++++|++++.+
T Consensus 77 ~~~l---~~-----~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 112 (214)
T COG0664 77 ELAL---LG-----G-DPRSASAVALTDVEVLEIPRKDFLELLAE 112 (214)
T ss_pred hHHH---hc-----C-CCccceEEEcceEEEEEecHHHHHHHHhh
Confidence 9865 21 1 14678999999999999999999998876
No 10
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.56 E-value=3.7e-14 Score=137.78 Aligned_cols=110 Identities=20% Similarity=0.273 Sum_probs=94.8
Q ss_pred hhhhhcCCCCCCCCHHHHHHHhhcceeEEecCCCeEEccCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCc
Q 023527 151 KDPILLVEEFGNLDGSSLEKLCDVVKPAVFTERSYIIQEENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGD 230 (281)
Q Consensus 151 ~dlLr~vplF~~L~e~~L~~I~~~l~~~~y~kGe~I~rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GD 230 (281)
.++|+++|+|++|++++++.|+.+++.+.|+||++|+++||+++++|+|++|+|+++..+ .+| +..+ ..+++||
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~----~~g-e~~l-~~l~~Gd 80 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPA----EEE-SRPE-FLLKRYD 80 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEEC----CCC-cEEE-EEeCCCC
Confidence 345899999999999999999999999999999999999999999999999999999877 244 3333 7889999
Q ss_pred eechhhHHHhhcCCCCCCCCCcceEEEEcccEEEEEEcHHHHHHHHh
Q 023527 231 FSGEELIAWAKAGHNSSNLPISTKTIQALTKVEAFVLMAYDLKQVLL 277 (281)
Q Consensus 231 ffGE~lL~w~l~~~s~~~~p~s~~TV~Altdvell~L~~edL~~l~~ 277 (281)
+|||. + . + .++.++++|.++|+++.|++++|..+-.
T Consensus 81 ~fG~~-l----~-----~-~~~~~~~~A~~d~~v~~ip~~~~~~~~~ 116 (413)
T PLN02868 81 YFGYG-L----S-----G-SVHSADVVAVSELTCLVLPHEHCHLLSP 116 (413)
T ss_pred Eeehh-h----C-----C-CCcccEEEECCCEEEEEEcHHHHhhhcc
Confidence 99975 3 1 1 3477899999999999999999976543
No 11
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.55 E-value=5.4e-14 Score=125.20 Aligned_cols=111 Identities=14% Similarity=0.133 Sum_probs=93.2
Q ss_pred hhcCCCCCCCCHHHHHHHhhccee-EEecCCCeEEccCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCcee
Q 023527 154 ILLVEEFGNLDGSSLEKLCDVVKP-AVFTERSYIIQEENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFS 232 (281)
Q Consensus 154 Lr~vplF~~L~e~~L~~I~~~l~~-~~y~kGe~I~rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDff 232 (281)
+++.+.|..|++++++.|....+. +.|+||++|+++||+.+++|+|.+|.|+++..+ .+|++.++ ....|||+|
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~----~~G~e~i~-~~~~~gd~~ 89 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTIT----EQGDEQIT-GFHLAGDLV 89 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEEC----CCCCEEEE-EeccCCcee
Confidence 566666667999999999988864 689999999999999999999999999999877 36787665 678999999
Q ss_pred chhhHHHhhcCCCCCCCCCcceEEEEcccEEEEEEcHHHHHHHHhhh
Q 023527 233 GEELIAWAKAGHNSSNLPISTKTIQALTKVEAFVLMAYDLKQVLLNI 279 (281)
Q Consensus 233 GE~lL~w~l~~~s~~~~p~s~~TV~Altdvell~L~~edL~~l~~~f 279 (281)
|+..+ +. ..+..+++|+++++++.+++++|++++.++
T Consensus 90 g~~~~---~~-------~~~~~~~~a~~~~~i~~ip~~~f~~l~~~~ 126 (235)
T PRK11161 90 GFDAI---GS-------GQHPSFAQALETSMVCEIPFETLDDLSGKM 126 (235)
T ss_pred ccccc---cC-------CCCcceEEEeccEEEEEEEHHHHHHHHHHC
Confidence 98643 11 123457899999999999999999988765
No 12
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.53 E-value=8.8e-14 Score=104.25 Aligned_cols=89 Identities=21% Similarity=0.257 Sum_probs=76.1
Q ss_pred EEecCCCeEEccCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceechhhHHHhhcCCCCCCCCCcceEEE
Q 023527 178 AVFTERSYIIQEENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSGEELIAWAKAGHNSSNLPISTKTIQ 257 (281)
Q Consensus 178 ~~y~kGe~I~rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffGE~lL~w~l~~~s~~~~p~s~~TV~ 257 (281)
+.|+||++|+++||+.+++|||++|.+++...+ .+|+.... ..+.+|++||+..+ +. . .++..+++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~----~~~~~~~~-~~~~~g~~~g~~~~---~~-----~-~~~~~~~~ 67 (91)
T PF00027_consen 2 KTYKKGEVIYRQGDPCDHIYIILSGEVKVSSIN----EDGKEQII-FFLGPGDIFGEIEL---LT-----G-KPSPFTVI 67 (91)
T ss_dssp EEESTTEEEEETTSBESEEEEEEESEEEEEEET----TTSEEEEE-EEEETTEEESGHHH---HH-----T-SBBSSEEE
T ss_pred eEECCCCEEEeCCCcCCEEEEEEECceEEEece----ecceeeee-cceeeeccccceee---cC-----C-CccEEEEE
Confidence 689999999999999999999999999999887 35554433 78999999999854 22 1 24778999
Q ss_pred EcccEEEEEEcHHHHHHHHhhhc
Q 023527 258 ALTKVEAFVLMAYDLKQVLLNID 280 (281)
Q Consensus 258 Altdvell~L~~edL~~l~~~f~ 280 (281)
|+++|+++.|++++|.++++++.
T Consensus 68 a~~~~~~~~i~~~~~~~~~~~~p 90 (91)
T PF00027_consen 68 ALTDSEVLRIPREDFLQLLQQDP 90 (91)
T ss_dssp ESSSEEEEEEEHHHHHHHHHHSH
T ss_pred EccCEEEEEEeHHHHHHHHHhCc
Confidence 99999999999999999999874
No 13
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.48 E-value=5.7e-14 Score=138.03 Aligned_cols=144 Identities=21% Similarity=0.286 Sum_probs=117.9
Q ss_pred cccchhhhhheehhhhhhhhHHHHHHHhhc-------chhhhhcCCCCCCCCHHHHHHHhhcceeEEecCCCeEEccCCC
Q 023527 120 QNYFFRRYLPCFQWSLQALRLRLTFILSNK-------HKDPILLVEEFGNLDGSSLEKLCDVVKPAVFTERSYIIQEENP 192 (281)
Q Consensus 120 ~~~~~~~~~~~~~Wg~~~~st~f~~ll~~l-------p~dlLr~vplF~~L~e~~L~~I~~~l~~~~y~kGe~I~rEGDp 192 (281)
.+.-++.+..|=-|.|++-. |..++... -...|+.+|+|++++++.|..|++.+....|.+|++|+|||+.
T Consensus 235 RtAsV~alt~~~lWaidR~v--Fq~IM~~tg~~r~~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~ 312 (732)
T KOG0614|consen 235 RTASVRALTDVRLWAIDREV--FQAIMMRTGLERHEQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEK 312 (732)
T ss_pred chhhhhhhhhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCC
Confidence 34557888889999999833 55553221 1335999999999999999999999999999999999999999
Q ss_pred cCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceechhhHHHhhcCCCCCCCCCcceEEEEccc-EEEEEEcHHH
Q 023527 193 IDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSGEELIAWAKAGHNSSNLPISTKTIQALTK-VEAFVLMAYD 271 (281)
Q Consensus 193 ~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffGE~lL~w~l~~~s~~~~p~s~~TV~Altd-vell~L~~ed 271 (281)
++.+|+|.+|+|++.+.++. .++...+ +.++.||+|||.+| + +...+++++.|.++ ++++.|+++.
T Consensus 313 G~~ffii~~G~V~vtq~~e~---~~q~~~l-r~l~kGd~FGE~al---~------~edvRtAniia~~~gv~cl~lDres 379 (732)
T KOG0614|consen 313 GDTFFIISKGTVKVTQQDEG---STQPQEL-RTLNKGDYFGERAL---L------GEDVRTANIIAQAPGVECLTLDRES 379 (732)
T ss_pred CCeEEEEecceEEEeecCCC---CCchhHH-hhccccchhhHHHh---h------ccCccchhhhccCCCceEEEecHHH
Confidence 99999999999999988821 1344444 89999999999977 2 22467899999988 9999999999
Q ss_pred HHHHHhh
Q 023527 272 LKQVLLN 278 (281)
Q Consensus 272 L~~l~~~ 278 (281)
|+.++..
T Consensus 380 F~~liG~ 386 (732)
T KOG0614|consen 380 FKKLIGD 386 (732)
T ss_pred HHHhccc
Confidence 9887653
No 14
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.43 E-value=7.1e-13 Score=118.21 Aligned_cols=96 Identities=21% Similarity=0.292 Sum_probs=82.2
Q ss_pred HHhhcceeEEecCCCeEEccCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceechhhHHHhhcCCCCCCC
Q 023527 170 KLCDVVKPAVFTERSYIIQEENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSGEELIAWAKAGHNSSNL 249 (281)
Q Consensus 170 ~I~~~l~~~~y~kGe~I~rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffGE~lL~w~l~~~s~~~~ 249 (281)
.|.+..+.+.|+||++|+++||+.+++|||++|.|+++..+ .+|++.++ ..+.|||+|||..+ +. .
T Consensus 26 ~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~----~~G~e~~~-~~~~~g~~~G~~~~---~~-----~- 91 (226)
T PRK10402 26 DVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATL----ANGKVSLI-DFFAAPCFIGEIEL---ID-----K- 91 (226)
T ss_pred HHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEEC----CCCCEeee-eecCCCCeEEeehh---hc-----C-
Confidence 46777888999999999999999999999999999999877 36777665 78999999999754 22 1
Q ss_pred CCcceEEEEcccEEEEEEcHHHHHHHHhhh
Q 023527 250 PISTKTIQALTKVEAFVLMAYDLKQVLLNI 279 (281)
Q Consensus 250 p~s~~TV~Altdvell~L~~edL~~l~~~f 279 (281)
.+++.+++|+++|+++.+++++|++++.+.
T Consensus 92 ~~~~~~~~A~~~~~i~~i~~~~~~~ll~~~ 121 (226)
T PRK10402 92 DHETKAVQAIEECWCLALPMKDCRPLLLND 121 (226)
T ss_pred CCCCccEEEeccEEEEEEEHHHHHHHHhcC
Confidence 347789999999999999999999988654
No 15
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.34 E-value=7.2e-12 Score=112.22 Aligned_cols=93 Identities=18% Similarity=0.102 Sum_probs=79.0
Q ss_pred HHhhcceeEEecCCCeEEccCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceechhhHHHhhcCCCCCCC
Q 023527 170 KLCDVVKPAVFTERSYIIQEENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSGEELIAWAKAGHNSSNL 249 (281)
Q Consensus 170 ~I~~~l~~~~y~kGe~I~rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffGE~lL~w~l~~~s~~~~ 249 (281)
+++...+.+.|+||++|+++||+++++|||++|.|+++..+ .+|++.++ ..+.|||+||+.. .
T Consensus 33 ~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~----~~G~e~i~-~~~~~Gd~fG~~~-----------~- 95 (230)
T PRK09391 33 HAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLL----SDGRRQIG-AFHLPGDVFGLES-----------G- 95 (230)
T ss_pred cccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEEC----CCCcEEEE-EEecCCceecccC-----------C-
Confidence 45667788999999999999999999999999999999876 36776555 7889999999741 1
Q ss_pred CCcceEEEEcccEEEEEEcHHHHHHHHhhh
Q 023527 250 PISTKTIQALTKVEAFVLMAYDLKQVLLNI 279 (281)
Q Consensus 250 p~s~~TV~Altdvell~L~~edL~~l~~~f 279 (281)
.++..+++|+++|+++.+++++|++++.+.
T Consensus 96 ~~~~~~~~A~~ds~v~~i~~~~f~~l~~~~ 125 (230)
T PRK09391 96 STHRFTAEAIVDTTVRLIKRRSLEQAAATD 125 (230)
T ss_pred CcCCeEEEEcCceEEEEEEHHHHHHHHhhC
Confidence 235689999999999999999999988754
No 16
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.34 E-value=7.4e-12 Score=108.66 Aligned_cols=84 Identities=21% Similarity=0.203 Sum_probs=70.9
Q ss_pred cceeEEecCCCeEEccCC--CcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceechhhHHHhhcCCCCCCCCC
Q 023527 174 VVKPAVFTERSYIIQEEN--PIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSGEELIAWAKAGHNSSNLPI 251 (281)
Q Consensus 174 ~l~~~~y~kGe~I~rEGD--p~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffGE~lL~w~l~~~s~~~~p~ 251 (281)
..+...|+||++|++||| +.+++|+|++|.|+++..+ .+|++.++ ..+.|||+|||..+ + . .+
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~----~~G~e~~l-~~~~~Gd~~G~~~~---~------~-~~ 69 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVD----DEGNALTL-RYVRPGEYFGEEAL---A------G-AE 69 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEEC----CCCCEEEE-EEecCCCeechHHh---c------C-CC
Confidence 457789999999999999 7799999999999999877 47887766 88999999999644 1 1 23
Q ss_pred cceEEEEcccEEEEEEcHHHH
Q 023527 252 STKTIQALTKVEAFVLMAYDL 272 (281)
Q Consensus 252 s~~TV~Altdvell~L~~edL 272 (281)
++.+++|+++++++.|++++|
T Consensus 70 ~~~~~~A~~~~~v~~i~~~~~ 90 (202)
T PRK13918 70 RAYFAEAVTDSRIDVLNPALM 90 (202)
T ss_pred CCceEEEcCceEEEEEEHHHc
Confidence 567899999999999987765
No 17
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.28 E-value=2.1e-12 Score=121.83 Aligned_cols=132 Identities=16% Similarity=0.177 Sum_probs=113.1
Q ss_pred hhhheehhhhhhhhHHHHHH-------HhhcchhhhhcCCCCCCCCHHHHHHHhhcceeEEecCCCeEEccCCCcCeEEE
Q 023527 126 RYLPCFQWSLQALRLRLTFI-------LSNKHKDPILLVEEFGNLDGSSLEKLCDVVKPAVFTERSYIIQEENPIDQMLF 198 (281)
Q Consensus 126 ~~~~~~~Wg~~~~st~f~~l-------l~~lp~dlLr~vplF~~L~e~~L~~I~~~l~~~~y~kGe~I~rEGDp~~~myf 198 (281)
+-..+--||++++| |.-+ .+.+-+++|+.+|+++.++..+...|++.+.++.|++|+.|+++|++++.+|+
T Consensus 209 a~t~~klWgldr~S--FrrIi~~s~~kkrkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~ 286 (368)
T KOG1113|consen 209 AKSLKKLWGLDRTS--FRRIIMKSCIKKRKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYI 286 (368)
T ss_pred eccccceEEEeece--eEEEeeccchhhhhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEE
Confidence 44488899999977 4432 46677888999999999999999999999999999999999999999999999
Q ss_pred EEEcEEEEEEeccccccCCCcceeeeeecCCceechhhHHHhhcCCCCCCCCCcceEEEEcccEEEEEEcHHHHHHHHh
Q 023527 199 VLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSGEELIAWAKAGHNSSNLPISTKTIQALTKVEAFVLMAYDLKQVLL 277 (281)
Q Consensus 199 Il~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffGE~lL~w~l~~~s~~~~p~s~~TV~Altdvell~L~~edL~~l~~ 277 (281)
|.+|.+.+.... +| +. ..+++||+|||.+|. .+. ++.+||.|..+..+..+++..|+.|+.
T Consensus 287 i~eGEvdv~~~~-----~~---v~-vkl~~~dyfge~al~--------~~~-pr~Atv~a~~~~kc~~~dk~~ferllg 347 (368)
T KOG1113|consen 287 IEEGEVDVLKKR-----DG---VE-VKLKKGDYFGELALL--------KNL-PRAATVVAKGRLKCAKLDKPRFERLLG 347 (368)
T ss_pred ecccccchhhcc-----CC---eE-EEechhhhcchHHHH--------hhc-hhhceeeccCCceeeeeChHHHHHHhh
Confidence 999999987654 44 23 489999999998761 233 477999999999999999999999875
No 18
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.27 E-value=2.4e-11 Score=104.36 Aligned_cols=84 Identities=13% Similarity=0.088 Sum_probs=70.4
Q ss_pred CCeEEccCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceechhhHHHhhcCCCCCCCC-CcceEEEEccc
Q 023527 183 RSYIIQEENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSGEELIAWAKAGHNSSNLP-ISTKTIQALTK 261 (281)
Q Consensus 183 Ge~I~rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffGE~lL~w~l~~~s~~~~p-~s~~TV~Altd 261 (281)
|++|+++||+.+++|+|++|.|+++..+ .+|++..+ ..++|||+|||..+ +. ..+ ++..+++|+++
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~----~~G~e~~l-~~~~~g~~~G~~~~---~~-----~~~~~~~~~~~A~~~ 67 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVY----ESGEEITV-ALLRENSVFGVLSL---IT-----GHRSDRFYHAVAFTR 67 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeC----CCCcEeee-EEccCCCEeeeeee---cc-----CCCCccceEEEEecc
Confidence 7899999999999999999999999876 36787655 88999999999754 21 112 24478999999
Q ss_pred EEEEEEcHHHHHHHHhhh
Q 023527 262 VEAFVLMAYDLKQVLLNI 279 (281)
Q Consensus 262 vell~L~~edL~~l~~~f 279 (281)
|+++.+++++|++++.++
T Consensus 68 ~~v~~i~~~~~~~l~~~~ 85 (193)
T TIGR03697 68 VELLAVPIEQVEKAIEED 85 (193)
T ss_pred eEEEEeeHHHHHHHHHHC
Confidence 999999999999998765
No 19
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.22 E-value=6.2e-12 Score=123.90 Aligned_cols=113 Identities=24% Similarity=0.354 Sum_probs=98.7
Q ss_pred hhcchhhhhcCCCCCCCCHHHHHHHhhcceeEEecCCCeEEccCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeee
Q 023527 147 SNKHKDPILLVEEFGNLDGSSLEKLCDVVKPAVFTERSYIIQEENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHL 226 (281)
Q Consensus 147 ~~lp~dlLr~vplF~~L~e~~L~~I~~~l~~~~y~kGe~I~rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L 226 (281)
+++..+-|++..|+++|+++++.+|.+.+-+..|.+|++|++|||+++++|++.+|++++++. |+ ++ ..+
T Consensus 149 k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~~-------g~--ll-~~m 218 (732)
T KOG0614|consen 149 KQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSRE-------GK--LL-GKM 218 (732)
T ss_pred HHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEeeC-------Ce--ee-ecc
Confidence 445556688999999999999999999999999999999999999999999999999999873 34 34 789
Q ss_pred cCCceechhhHHHhhcCCCCCCCCCcceEEEEcccEEEEEEcHHHHHHHHhh
Q 023527 227 EGGDFSGEELIAWAKAGHNSSNLPISTKTIQALTKVEAFVLMAYDLKQVLLN 278 (281)
Q Consensus 227 ~~GDffGE~lL~w~l~~~s~~~~p~s~~TV~Altdvell~L~~edL~~l~~~ 278 (281)
++|..|||.++ |. + ..+++||+|++++.+.+|+++.|..++..
T Consensus 219 ~~gtvFGELAI---Ly-----n-ctRtAsV~alt~~~lWaidR~vFq~IM~~ 261 (732)
T KOG0614|consen 219 GAGTVFGELAI---LY-----N-CTRTASVRALTDVRLWAIDREVFQAIMMR 261 (732)
T ss_pred CCchhhhHHHH---Hh-----C-CcchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999865 32 2 34789999999999999999999998754
No 20
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.17 E-value=1.6e-10 Score=114.83 Aligned_cols=113 Identities=16% Similarity=0.232 Sum_probs=98.1
Q ss_pred cchhhhhcCCCCCCCCHHHHHHHhhcceeEEecCCCeEEccCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecC
Q 023527 149 KHKDPILLVEEFGNLDGSSLEKLCDVVKPAVFTERSYIIQEENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEG 228 (281)
Q Consensus 149 lp~dlLr~vplF~~L~e~~L~~I~~~l~~~~y~kGe~I~rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~ 228 (281)
.|.+.+++.|.|+.|+++++++|.+.+...-|.|||.|+..|.|.+.+|+|.+|.|++...+ |+ ++ ..+..
T Consensus 4 ~~~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~------g~--v~-~~~~~ 74 (610)
T COG2905 4 EPDQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDG------GE--VL-DRLAA 74 (610)
T ss_pred CHHHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCC------Ce--ee-eeecc
Confidence 47888999999999999999999999999999999999999999999999999999987644 34 33 78999
Q ss_pred CceechhhHHHhhcCCCCCCCCCcceEEEEcccEEEEEEcHHHHHHHHhhh
Q 023527 229 GDFSGEELIAWAKAGHNSSNLPISTKTIQALTKVEAFVLMAYDLKQVLLNI 279 (281)
Q Consensus 229 GDffGE~lL~w~l~~~s~~~~p~s~~TV~Altdvell~L~~edL~~l~~~f 279 (281)
||.||-..| ++ ..+ ...++.|.+|+-++.|+++.|.++..++
T Consensus 75 gdlFg~~~l---~~-----~~~-~~~~~~aeedsl~y~lp~s~F~ql~~~n 116 (610)
T COG2905 75 GDLFGFSSL---FT-----ELN-KQRYMAAEEDSLCYLLPKSVFMQLMEEN 116 (610)
T ss_pred Cccccchhh---cc-----cCC-CcceeEeeccceEEecCHHHHHHHHHhC
Confidence 999999865 21 122 2356788999999999999999999876
No 21
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.13 E-value=5.9e-11 Score=112.10 Aligned_cols=103 Identities=17% Similarity=0.213 Sum_probs=90.5
Q ss_pred hhcCCCCCCCCHHHHHHHhhcceeEEecCCCeEEccCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceec
Q 023527 154 ILLVEEFGNLDGSSLEKLCDVVKPAVFTERSYIIQEENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSG 233 (281)
Q Consensus 154 Lr~vplF~~L~e~~L~~I~~~l~~~~y~kGe~I~rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffG 233 (281)
+++.-+|++||++++..+.+.+..+.+++|+.|+.+||.++.||+|-+|...++..+ + .+ ..++||.+||
T Consensus 124 ~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~~-------~--~v-~~~~~g~sFG 193 (368)
T KOG1113|consen 124 FRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVNG-------T--YV-TTYSPGGSFG 193 (368)
T ss_pred HHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEECC-------e--EE-eeeCCCCchh
Confidence 788999999999999999999999999999999999999999999999999998754 2 12 6799999999
Q ss_pred hhhHHHhhcCCCCCCCCCcceEEEEcccEEEEEEcHHHHHHH
Q 023527 234 EELIAWAKAGHNSSNLPISTKTIQALTKVEAFVLMAYDLKQV 275 (281)
Q Consensus 234 E~lL~w~l~~~s~~~~p~s~~TV~Altdvell~L~~edL~~l 275 (281)
|.+|- .+ +++.+||.|.+++.+..|++..|..+
T Consensus 194 ElALm--------yn-~PRaATv~a~t~~klWgldr~SFrrI 226 (368)
T KOG1113|consen 194 ELALM--------YN-PPRAATVVAKSLKKLWGLDRTSFRRI 226 (368)
T ss_pred hhHhh--------hC-CCcccceeeccccceEEEeeceeEEE
Confidence 98771 12 56889999999999999998776543
No 22
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.96 E-value=1e-09 Score=109.33 Aligned_cols=109 Identities=20% Similarity=0.264 Sum_probs=95.4
Q ss_pred hhcCCCCCCCCHHHHHHHhhcceeEEecCCCeEEccCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceec
Q 023527 154 ILLVEEFGNLDGSSLEKLCDVVKPAVFTERSYIIQEENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSG 233 (281)
Q Consensus 154 Lr~vplF~~L~e~~L~~I~~~l~~~~y~kGe~I~rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffG 233 (281)
....|-|.--+|.-|.+++-.+...+..||+.|++.|+.+|.+.||++|.+++.+.| + ++ ++|+.||+||
T Consensus 550 FnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDD-----E----VV-AILGKGDVFG 619 (971)
T KOG0501|consen 550 FNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDD-----E----VV-AILGKGDVFG 619 (971)
T ss_pred hccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecC-----c----EE-EEeecCccch
Confidence 677899999999999999999999999999999999999999999999999999877 2 12 8999999999
Q ss_pred hhhHHHhhcCCCCCCCCCcceEEEEcccEEEEEEcHHHHHHHHhhh
Q 023527 234 EELIAWAKAGHNSSNLPISTKTIQALTKVEAFVLMAYDLKQVLLNI 279 (281)
Q Consensus 234 E~lL~w~l~~~s~~~~p~s~~TV~Altdvell~L~~edL~~l~~~f 279 (281)
.+. |- + .....|.++|+|+|-|.+-.|.++.|.++++-|
T Consensus 620 D~F--WK-~----~t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFY 658 (971)
T KOG0501|consen 620 DEF--WK-E----NTLGQSAANVRALTYCDLHMIKRDKLLKVLDFY 658 (971)
T ss_pred hHH--hh-h----hhhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHH
Confidence 983 31 1 122357789999999999999999999998755
No 23
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.88 E-value=1.1e-05 Score=84.19 Aligned_cols=92 Identities=15% Similarity=0.170 Sum_probs=74.2
Q ss_pred cceeEEecCCCeEEccCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceechhhHHHhhcCCCCCCCCCcc
Q 023527 174 VVKPAVFTERSYIIQEENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSGEELIAWAKAGHNSSNLPIST 253 (281)
Q Consensus 174 ~l~~~~y~kGe~I~rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffGE~lL~w~l~~~s~~~~p~s~ 253 (281)
.+.-.+..+|+.++++||+.|++|+|++|++++.... .+|+..++ ...+.||.+|+.-. +. + .++.
T Consensus 507 AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~----~~~k~~i~-~EygrGd~iG~~E~---lt-----~-~~R~ 572 (1158)
T KOG2968|consen 507 ALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQ----SGGKKEIV-GEYGRGDLIGEVEM---LT-----K-QPRA 572 (1158)
T ss_pred hcceEEeccccHHHhcCCccCcEEEEecCeehhhhhc----cCccchhh-hhccCcceeehhHH---hh-----c-CCcc
Confidence 3445789999999999999999999999999977543 26665455 78899999999632 11 2 2356
Q ss_pred eEEEEcccEEEEEEcHHHHHHHHhhh
Q 023527 254 KTIQALTKVEAFVLMAYDLKQVLLNI 279 (281)
Q Consensus 254 ~TV~Altdvell~L~~edL~~l~~~f 279 (281)
.|+.|+.++|+..|+..-|..+..+|
T Consensus 573 tTv~AvRdSelariPe~l~~~ik~ry 598 (1158)
T KOG2968|consen 573 TTVMAVRDSELARIPEGLLNFIKLRY 598 (1158)
T ss_pred ceEEEEeehhhhhccHHHHHHHHHhc
Confidence 79999999999999999999887776
No 24
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=97.12 E-value=0.0089 Score=51.14 Aligned_cols=104 Identities=14% Similarity=0.165 Sum_probs=81.0
Q ss_pred CCCHHHHHHHhhc-ceeEEecCCCeEEccC-CCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceechhhHHH
Q 023527 162 NLDGSSLEKLCDV-VKPAVFTERSYIIQEE-NPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSGEELIAW 239 (281)
Q Consensus 162 ~L~e~~L~~I~~~-l~~~~y~kGe~I~rEG-Dp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffGE~lL~w 239 (281)
+++..+..+|+.. .+....++|+.-..|| .|+|++-++++|+++++. +|+ ++ ..+.|-+|.--- .|
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~-------~g~--fL-H~I~p~qFlDSP--EW 81 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSC-------DGR--FL-HYIYPYQFLDSP--EW 81 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEE-------CCE--ee-EeecccccccCh--hh
Confidence 4578899999888 6778899999999999 569999999999999886 334 34 667888887543 55
Q ss_pred hhcCCCCCCCCCcceEEEEcccEEEEEEcHHHHHHHHhhh
Q 023527 240 AKAGHNSSNLPISTKTIQALTKVEAFVLMAYDLKQVLLNI 279 (281)
Q Consensus 240 ~l~~~s~~~~p~s~~TV~Altdvell~L~~edL~~l~~~f 279 (281)
...+++ ....-..|+.|.++|..+.-+++.|+.++..-
T Consensus 82 ~s~~~s--~~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~ 119 (153)
T PF04831_consen 82 ESLRPS--EDDKFQVTITAEEDCRYLCWPREKLYLLLAKD 119 (153)
T ss_pred hccccC--CCCeEEEEEEEcCCcEEEEEEHHHHHHHHhhC
Confidence 433222 22346789999999999999999999887653
No 25
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.10 E-value=0.00066 Score=71.38 Aligned_cols=103 Identities=13% Similarity=0.052 Sum_probs=79.9
Q ss_pred HhhcceeEEecCCCeEEccCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceechhhHHHhhcCCCCCCCC
Q 023527 171 LCDVVKPAVFTERSYIIQEENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSGEELIAWAKAGHNSSNLP 250 (281)
Q Consensus 171 I~~~l~~~~y~kGe~I~rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffGE~lL~w~l~~~s~~~~p 250 (281)
++++.+...+..|++|++.|++-+.+|.+.+|.+++...+ .+|++..+ ....||+.|--.+ + .++-.+....+
T Consensus 111 L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~----~~g~~~ll-k~V~~G~~~tSll-S-iLd~l~~~ps~ 183 (1158)
T KOG2968|consen 111 LDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRN----GDGKEYLL-KTVPPGGSFTSLL-S-ILDSLPGFPSL 183 (1158)
T ss_pred echhhhhhcccCCceeccCCCCCceEEEEeccceEEEecC----CCCceeeE-eeccCCCchHhHH-H-HHHhccCCCcc
Confidence 3477888899999999999999999999999999988766 36787666 7889998876532 1 23422221112
Q ss_pred CcceEEEEcccEEEEEEcHHHHHHHHhhhc
Q 023527 251 ISTKTIQALTKVEAFVLMAYDLKQVLLNID 280 (281)
Q Consensus 251 ~s~~TV~Altdvell~L~~edL~~l~~~f~ 280 (281)
..+..++|.++|.+..++.+.|+++...|.
T Consensus 184 ~~~i~akA~t~~tv~~~p~~sF~~~~~k~P 213 (1158)
T KOG2968|consen 184 SRTIAAKAATDCTVARIPYTSFRESFHKNP 213 (1158)
T ss_pred cceeeeeeecCceEEEeccchhhhhhccCh
Confidence 345678999999999999999999987763
No 26
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=96.97 E-value=0.0012 Score=67.85 Aligned_cols=107 Identities=15% Similarity=0.208 Sum_probs=85.5
Q ss_pred hhcCCCCCCCCHHHHHHHhhccee-EEecCCCeEEccCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCcee
Q 023527 154 ILLVEEFGNLDGSSLEKLCDVVKP-AVFTERSYIIQEENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFS 232 (281)
Q Consensus 154 Lr~vplF~~L~e~~L~~I~~~l~~-~~y~kGe~I~rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDff 232 (281)
+.+.|-|.+|+.....++|..+.. ..-.+|.+|+..|+..|..++|++|.|++++.+ |.+ ..+.-|+.|
T Consensus 283 MhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~Pd-----Gk~-----e~l~mGnSF 352 (1283)
T KOG3542|consen 283 MHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPD-----GKR-----EELKMGNSF 352 (1283)
T ss_pred HHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCC-----Cce-----EEeeccccc
Confidence 789999999999999999998865 445789999999999999999999999999988 755 468899999
Q ss_pred chhhHHHhhcCCCCCCCCCcceEE-EEcccEEEEEEcHHHHHHHHhhh
Q 023527 233 GEELIAWAKAGHNSSNLPISTKTI-QALTKVEAFVLMAYDLKQVLLNI 279 (281)
Q Consensus 233 GE~lL~w~l~~~s~~~~p~s~~TV-~Altdvell~L~~edL~~l~~~f 279 (281)
|.+.- .+. .....-+ .-+.||+...+...|+-.++.+.
T Consensus 353 G~~PT---~dk------qym~G~mRTkVDDCqFVciaqqDycrIln~v 391 (1283)
T KOG3542|consen 353 GAEPT---PDK------QYMIGEMRTKVDDCQFVCIAQQDYCRILNTV 391 (1283)
T ss_pred CCCCC---cch------hhhhhhhheecccceEEEeehhhHHHHHHHH
Confidence 98631 110 0011112 24789999999999999888764
No 27
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=95.85 E-value=0.15 Score=45.89 Aligned_cols=95 Identities=7% Similarity=-0.036 Sum_probs=67.3
Q ss_pred HHHHHhhcceeEEecCCCeE-EccCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceechhhHHHhhcCCC
Q 023527 167 SLEKLCDVVKPAVFTERSYI-IQEENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSGEELIAWAKAGHN 245 (281)
Q Consensus 167 ~L~~I~~~l~~~~y~kGe~I-~rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffGE~lL~w~l~~~s 245 (281)
..+.+.....+..+.+|..+ ..+.+.-+..++|++|.+.+.+.| | -.+ .+..+--++|-... ..
T Consensus 14 L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr~d------~--ll~-~t~~aP~IlGl~~~---~~--- 78 (207)
T PRK11832 14 LDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRREE------N--VLI-GITQAPYIMGLADG---LM--- 78 (207)
T ss_pred HHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEecC------C--eEE-EeccCCeEeecccc---cC---
Confidence 34455566677899999997 544444477999999999995433 2 122 56677788886421 11
Q ss_pred CCCCCCcceEEEEcccEEEEEEcHHHHHHHHhhh
Q 023527 246 SSNLPISTKTIQALTKVEAFVLMAYDLKQVLLNI 279 (281)
Q Consensus 246 ~~~~p~s~~TV~Altdvell~L~~edL~~l~~~f 279 (281)
+ .......+|.++|++..++.+++.+++++.
T Consensus 79 --~-~~~~~~l~ae~~c~~~~i~~~~~~~iie~~ 109 (207)
T PRK11832 79 --K-NDIPYKLISEGNCTGYHLPAKQTITLIEQN 109 (207)
T ss_pred --C-CCceEEEEEcCccEEEEeeHHHHHHHHHHh
Confidence 1 122368999999999999999999999875
No 28
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=92.37 E-value=0.28 Score=34.95 Aligned_cols=45 Identities=18% Similarity=0.207 Sum_probs=35.0
Q ss_pred EEecCCCeEEccCCCcC-eEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceec
Q 023527 178 AVFTERSYIIQEENPID-QMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSG 233 (281)
Q Consensus 178 ~~y~kGe~I~rEGDp~~-~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffG 233 (281)
..++||+.+-..-.+.. ++++|++|++++. .+ | +. ..+++||.+=
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~-~~-----~-~~----~~l~~Gd~~~ 48 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT-VD-----G-ER----VELKPGDAIY 48 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEE-ET-----T-EE----EEEETTEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEE-Ec-----c-EE----eEccCCEEEE
Confidence 46788887777777777 9999999999987 44 3 32 6799999864
No 29
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=91.24 E-value=0.24 Score=51.56 Aligned_cols=88 Identities=15% Similarity=0.200 Sum_probs=68.8
Q ss_pred hhcCCCCCCCCHHHHHHHhhcceeEEecCCCeEEccCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceec
Q 023527 154 ILLVEEFGNLDGSSLEKLCDVVKPAVFTERSYIIQEENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSG 233 (281)
Q Consensus 154 Lr~vplF~~L~e~~L~~I~~~l~~~~y~kGe~I~rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffG 233 (281)
|++...|++|-...|.++|...+..++....++|+.||.+...|++++|.|-+. |. +.-|--.||
T Consensus 39 lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~---------gq------i~mp~~~fg 103 (1283)
T KOG3542|consen 39 LHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVE---------GQ------IYMPYGCFG 103 (1283)
T ss_pred HhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEee---------cc------eecCccccc
Confidence 688888999999999999999999999999999999999999999999998753 22 233555666
Q ss_pred hhhHHHhhcCCCCCCCCCcceEEEEcccEEEEEEc
Q 023527 234 EELIAWAKAGHNSSNLPISTKTIQALTKVEAFVLM 268 (281)
Q Consensus 234 E~lL~w~l~~~s~~~~p~s~~TV~Altdvell~L~ 268 (281)
... . ..++...-.++++|..+++
T Consensus 104 kr~---------g---~~r~~nclllq~semivid 126 (1283)
T KOG3542|consen 104 KRT---------G---QNRTHNCLLLQESEMIVID 126 (1283)
T ss_pred ccc---------c---cccccceeeecccceeeee
Confidence 541 0 1245566667777777774
No 30
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=85.63 E-value=5.9 Score=32.63 Aligned_cols=49 Identities=4% Similarity=0.009 Sum_probs=33.3
Q ss_pred eeEEecCCCeEEccCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceec
Q 023527 176 KPAVFTERSYIIQEENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSG 233 (281)
Q Consensus 176 ~~~~y~kGe~I~rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffG 233 (281)
....++||+.+-..-....++++|++|+++....+ +|++ ..|++||.+-
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~-----~g~~----~~L~aGD~i~ 86 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLA-----TGEV----HPIRPGTMYA 86 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcC-----CCEE----EEeCCCeEEE
Confidence 44578888755433222357999999999987332 2343 6799999975
No 31
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=84.14 E-value=1.4 Score=32.84 Aligned_cols=42 Identities=19% Similarity=0.285 Sum_probs=29.1
Q ss_pred ecCCCeEEccCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceec
Q 023527 180 FTERSYIIQEENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSG 233 (281)
Q Consensus 180 y~kGe~I~rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffG 233 (281)
-++|..-..- +.+++.+|++|++.+...+ |.. ..++|||.+=
T Consensus 14 ~~pg~~~~~~--~~~E~~~vleG~v~it~~~------G~~----~~~~aGD~~~ 55 (74)
T PF05899_consen 14 CTPGKFPWPY--PEDEFFYVLEGEVTITDED------GET----VTFKAGDAFF 55 (74)
T ss_dssp EECEEEEEEE--SSEEEEEEEEEEEEEEETT------TEE----EEEETTEEEE
T ss_pred ECCceeEeeC--CCCEEEEEEEeEEEEEECC------CCE----EEEcCCcEEE
Confidence 3455544433 2289999999999987544 343 6799999974
No 32
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=82.52 E-value=3.9 Score=33.12 Aligned_cols=50 Identities=22% Similarity=0.241 Sum_probs=41.0
Q ss_pred ceeEEecCCCeEEccCCC-cCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceechh
Q 023527 175 VKPAVFTERSYIIQEENP-IDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSGEE 235 (281)
Q Consensus 175 l~~~~y~kGe~I~rEGDp-~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffGE~ 235 (281)
.....++||+.+-.--.| .+...+|++|+++..... +. ..+++||++-..
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~g-------~~----~~l~~Gd~i~ip 95 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLEG-------EK----KELKAGDVIIIP 95 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEecC-------Cc----eEecCCCEEEEC
Confidence 456789999999999888 889999999999986533 33 569999998764
No 33
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=79.22 E-value=7 Score=32.38 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=38.1
Q ss_pred ceeEEecCCCeEEccCCC-cCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceech
Q 023527 175 VKPAVFTERSYIIQEENP-IDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSGE 234 (281)
Q Consensus 175 l~~~~y~kGe~I~rEGDp-~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffGE 234 (281)
+....+.+|...-..-.+ .+++++|++|+.++...+ .+|++... ..+++||.+=-
T Consensus 32 ~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~----~~~~~~~~-~~l~~GD~~~i 87 (146)
T smart00835 32 AARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVD----PNGNKVYD-ARLREGDVFVV 87 (146)
T ss_pred EEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEe----CCCCeEEE-EEecCCCEEEE
Confidence 445678888876655544 679999999999988655 13333222 67999998743
No 34
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=72.88 E-value=18 Score=27.45 Aligned_cols=64 Identities=19% Similarity=0.209 Sum_probs=45.7
Q ss_pred cceeEEecCCCeEEccCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceechhhHHHhhcCCCCCCCCCcc
Q 023527 174 VVKPAVFTERSYIIQEENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSGEELIAWAKAGHNSSNLPIST 253 (281)
Q Consensus 174 ~l~~~~y~kGe~I~rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffGE~lL~w~l~~~s~~~~p~s~ 253 (281)
+..-.++++|..+=....+..+..+|++|.+.- + + ..+.+||+.=+. +-+.
T Consensus 25 ~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d---~-----~-------~~~~~G~~~~~p--------------~g~~ 75 (91)
T PF12973_consen 25 RVSLLRLEPGASLPRHRHPGGEEILVLEGELSD---G-----D-------GRYGAGDWLRLP--------------PGSS 75 (91)
T ss_dssp EEEEEEE-TTEEEEEEEESS-EEEEEEECEEEE---T-----T-------CEEETTEEEEE---------------TTEE
T ss_pred EEEEEEECCCCCcCccCCCCcEEEEEEEEEEEE---C-----C-------ccCCCCeEEEeC--------------CCCc
Confidence 556688999999988888889999999999872 2 2 237899986442 2355
Q ss_pred eEEEEcccEEEEE
Q 023527 254 KTIQALTKVEAFV 266 (281)
Q Consensus 254 ~TV~Altdvell~ 266 (281)
.+..+-++|.++.
T Consensus 76 h~~~s~~gc~~~v 88 (91)
T PF12973_consen 76 HTPRSDEGCLILV 88 (91)
T ss_dssp EEEEESSCEEEEE
T ss_pred cccCcCCCEEEEE
Confidence 6777888888764
No 35
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=70.00 E-value=14 Score=30.14 Aligned_cols=48 Identities=15% Similarity=0.204 Sum_probs=35.0
Q ss_pred cceeEEecCCCeE-EccCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCcee
Q 023527 174 VVKPAVFTERSYI-IQEENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFS 232 (281)
Q Consensus 174 ~l~~~~y~kGe~I-~rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDff 232 (281)
..+...+++|+-+ .+--...+++|+|++|...+...+ ++ ..+++||.+
T Consensus 37 ~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~-------~~----~~v~~gd~~ 85 (127)
T COG0662 37 SIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGG-------EE----VEVKAGDSV 85 (127)
T ss_pred EEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECC-------EE----EEecCCCEE
Confidence 4455677777774 444455799999999999987633 43 468999986
No 36
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=68.91 E-value=13 Score=32.26 Aligned_cols=39 Identities=13% Similarity=0.405 Sum_probs=29.0
Q ss_pred EccCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceec
Q 023527 187 IQEENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSG 233 (281)
Q Consensus 187 ~rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffG 233 (281)
++. ++.++++.+++|.+.+...+ +|+-.. ..+++||+|=
T Consensus 43 ~H~-~~tdE~FyqleG~~~l~v~d-----~g~~~~--v~L~eGd~fl 81 (159)
T TIGR03037 43 FHD-DPGEEFFYQLKGEMYLKVTE-----EGKRED--VPIREGDIFL 81 (159)
T ss_pred ccc-CCCceEEEEEcceEEEEEEc-----CCcEEE--EEECCCCEEE
Confidence 444 34799999999999988777 554212 5799999983
No 37
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=65.81 E-value=12 Score=33.04 Aligned_cols=60 Identities=13% Similarity=0.227 Sum_probs=39.8
Q ss_pred CCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceechhhHHHhhcCCCCCCCCCcceEEEEcccEEEEEEcHH
Q 023527 191 NPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSGEELIAWAKAGHNSSNLPISTKTIQALTKVEAFVLMAY 270 (281)
Q Consensus 191 Dp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffGE~lL~w~l~~~s~~~~p~s~~TV~Altdvell~L~~e 270 (281)
++.++++.+++|.+.+...+ +|+... ..+++||+|=- |+ +.|-+ -++.++|..+.+.+.
T Consensus 52 ~~tdE~FyqleG~~~l~v~d-----~g~~~~--v~L~eGd~fll--------P~---gvpHs---P~r~~~tv~LviE~~ 110 (177)
T PRK13264 52 DPGEEFFYQLEGDMYLKVQE-----DGKRRD--VPIREGEMFLL--------PP---HVPHS---PQREAGSIGLVIERK 110 (177)
T ss_pred CCCceEEEEECCeEEEEEEc-----CCceee--EEECCCCEEEe--------CC---CCCcC---CccCCCeEEEEEEeC
Confidence 67899999999999988877 664222 57999999731 21 11222 244577777777654
Q ss_pred H
Q 023527 271 D 271 (281)
Q Consensus 271 d 271 (281)
.
T Consensus 111 r 111 (177)
T PRK13264 111 R 111 (177)
T ss_pred C
Confidence 3
No 38
>PRK11171 hypothetical protein; Provisional
Probab=62.24 E-value=22 Score=32.78 Aligned_cols=49 Identities=27% Similarity=0.289 Sum_probs=39.0
Q ss_pred cceeEEecCCCeEEc-cCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceec
Q 023527 174 VVKPAVFTERSYIIQ-EENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSG 233 (281)
Q Consensus 174 ~l~~~~y~kGe~I~r-EGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffG 233 (281)
.+....+++|..+-. +....++.++|++|++.+.. ||++ ..+++||+.-
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~-------~~~~----~~l~~GD~i~ 234 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL-------NNDW----VEVEAGDFIW 234 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE-------CCEE----EEeCCCCEEE
Confidence 556678999999887 47788899999999999854 3343 5799999864
No 39
>PRK11171 hypothetical protein; Provisional
Probab=57.90 E-value=25 Score=32.50 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=32.5
Q ss_pred eeEEecCCCeEEccCCC--cCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceec
Q 023527 176 KPAVFTERSYIIQEENP--IDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSG 233 (281)
Q Consensus 176 ~~~~y~kGe~I~rEGDp--~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffG 233 (281)
....+.+|+-.-....+ .+++++|++|++++.. +|++ ..|++||.+=
T Consensus 64 ~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~-------~g~~----~~L~~GDsi~ 112 (266)
T PRK11171 64 YLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTL-------EGKT----HALSEGGYAY 112 (266)
T ss_pred EEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEE-------CCEE----EEECCCCEEE
Confidence 44567888754433332 4789999999999875 3343 5799999873
No 40
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=56.16 E-value=7.1 Score=34.03 Aligned_cols=33 Identities=12% Similarity=0.190 Sum_probs=27.4
Q ss_pred CCHHHHHHHhhcceeEE--ecCCCeEEccCCCcCe
Q 023527 163 LDGSSLEKLCDVVKPAV--FTERSYIIQEENPIDQ 195 (281)
Q Consensus 163 L~e~~L~~I~~~l~~~~--y~kGe~I~rEGDp~~~ 195 (281)
.++...+...+...+.. +++|+.|+++||.++.
T Consensus 174 ~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT~ 208 (222)
T PF07697_consen 174 ATEKAREEALASVSPVRGMVKKGEVIVRKGEIVTE 208 (222)
T ss_pred HHHHHHHHHHhcCCchHhhccCCCEEecCCcEeCH
Confidence 45667777788888877 9999999999998763
No 41
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=54.72 E-value=51 Score=30.56 Aligned_cols=36 Identities=11% Similarity=0.112 Sum_probs=30.1
Q ss_pred ceeEEecCCCeEEccCCCcCeEEEEEEcEEEEEEec
Q 023527 175 VKPAVFTERSYIIQEENPIDQMLFVLQGKLWTYTSR 210 (281)
Q Consensus 175 l~~~~y~kGe~I~rEGDp~~~myfIl~G~V~v~~~~ 210 (281)
++....++|+..-.+-...+..++++.|++.++..+
T Consensus 31 F~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~~g 66 (270)
T COG3718 31 FRLLRLAAGESATEETGDRERCLVLVTGKATVSAHG 66 (270)
T ss_pred EEEEEccCCCcccccCCCceEEEEEEeeeEEEeecc
Confidence 455778999999888888999999999999987543
No 42
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=52.69 E-value=40 Score=32.79 Aligned_cols=51 Identities=10% Similarity=0.042 Sum_probs=34.4
Q ss_pred eEEecCCCeEEccCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceec
Q 023527 177 PAVFTERSYIIQEENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSG 233 (281)
Q Consensus 177 ~~~y~kGe~I~rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffG 233 (281)
...+.+|.+.----....++.+|++|++++...+ .+|+. +. ..+++||++=
T Consensus 71 ~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d----~~g~~-~~-~~L~~GD~~~ 121 (367)
T TIGR03404 71 NMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVD----ENGRN-YI-DDVGAGDLWY 121 (367)
T ss_pred EEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEc----CCCcE-EE-eEECCCCEEE
Confidence 3466777754332235678999999999988766 24553 11 3599999873
No 43
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=51.28 E-value=21 Score=30.91 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=28.5
Q ss_pred EEccCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceechh
Q 023527 186 IIQEENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSGEE 235 (281)
Q Consensus 186 I~rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffGE~ 235 (281)
..+--..-++|+.|++|+..... + +|+ ..++|||+.|=.
T Consensus 57 ~~H~Hs~edEfv~ILeGE~~l~~-d-----~~e-----~~lrpGD~~gFp 95 (161)
T COG3837 57 LRHWHSAEDEFVYILEGEGTLRE-D-----GGE-----TRLRPGDSAGFP 95 (161)
T ss_pred cccccccCceEEEEEcCceEEEE-C-----Cee-----EEecCCceeecc
Confidence 34444567899999999988654 3 444 679999998853
No 44
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=50.25 E-value=47 Score=27.27 Aligned_cols=56 Identities=13% Similarity=0.187 Sum_probs=37.4
Q ss_pred ceeEEecCCCeEEccCCCcCeEEEEEEcEEEEEEeccccccCCC---cceeeee--ecCCceech
Q 023527 175 VKPAVFTERSYIIQEENPIDQMLFVLQGKLWTYTSRRVTELSSN---SGNLNNH--LEGGDFSGE 234 (281)
Q Consensus 175 l~~~~y~kGe~I~rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr---~~~~~~~--L~~GDffGE 234 (281)
+....+++|....--=..++++.+|++|+.++.... .++. ....... +++||++--
T Consensus 36 ~~~~~i~pg~~~~Ph~h~a~~i~~V~~G~~~~~~v~----~~~~~~~~~~~~~~v~l~~Gdv~~v 96 (144)
T PF00190_consen 36 VRRVLIEPGGLRAPHYHNADEIVYVIEGRGRVGVVG----PGGPQEEFRDFSQKVRLKAGDVFVV 96 (144)
T ss_dssp EEEEEEETTEEEEEEEESSEEEEEEEESEEEEEEEE----TTCSSSEEEEEEEEEEEETTEEEEE
T ss_pred EEeeehhcCCccceeEeeeeEEeeeeccceEEEEEe----cCCccccceeeeceeeeecccceee
Confidence 344556888876655558999999999999976555 1331 1111144 999999864
No 45
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=48.39 E-value=51 Score=32.06 Aligned_cols=51 Identities=14% Similarity=0.153 Sum_probs=34.8
Q ss_pred eeEEecCCCeEEccCCC-cCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCcee
Q 023527 176 KPAVFTERSYIIQEENP-IDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFS 232 (281)
Q Consensus 176 ~~~~y~kGe~I~rEGDp-~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDff 232 (281)
....+++|...-.-=.+ .+++++|++|+.++...+ .+|+... ..+++||++
T Consensus 248 ~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d----~~g~~~~--~~l~~GD~~ 299 (367)
T TIGR03404 248 AIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFA----AGGNART--FDYQAGDVG 299 (367)
T ss_pred EEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEe----cCCcEEE--EEECCCCEE
Confidence 44567777765544445 789999999999988655 1333212 469999975
No 46
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=47.13 E-value=32 Score=29.53 Aligned_cols=43 Identities=14% Similarity=0.164 Sum_probs=28.6
Q ss_pred EecCCCeEEc-cCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCcee
Q 023527 179 VFTERSYIIQ-EENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFS 232 (281)
Q Consensus 179 ~y~kGe~I~r-EGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDff 232 (281)
.+.+|...-. --.+.+++++|++|++++... |++ ..+++||.+
T Consensus 113 ~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~~-------~~~----~~l~~Gd~~ 156 (185)
T PRK09943 113 TYQPGTTTGERIKHQGEEIGTVLEGEIVLTIN-------GQD----YHLVAGQSY 156 (185)
T ss_pred EccCCCCcccccccCCcEEEEEEEeEEEEEEC-------CEE----EEecCCCEE
Confidence 4556653211 123457999999999997652 243 579999986
No 47
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=46.48 E-value=45 Score=30.69 Aligned_cols=50 Identities=24% Similarity=0.202 Sum_probs=38.5
Q ss_pred hhcceeEEecCCCeEE-ccCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCcee
Q 023527 172 CDVVKPAVFTERSYII-QEENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFS 232 (281)
Q Consensus 172 ~~~l~~~~y~kGe~I~-rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDff 232 (281)
...+....+++|..+- ++-..-++.++|++|+-.... +|+. ..+++||++
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~-------~g~~----~~V~~GD~i 228 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNL-------DNNW----VPVEAGDYI 228 (260)
T ss_pred CcEEEEEEECCCcccCCcccccceeEEEEEeceEEEEE-------CCEE----EEecCCCEE
Confidence 4455668999999995 566778899999999988643 4443 678999996
No 48
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=43.81 E-value=35 Score=31.43 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=30.2
Q ss_pred eEEecCCCeEEc-cCCC-cCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceec
Q 023527 177 PAVFTERSYIIQ-EENP-IDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSG 233 (281)
Q Consensus 177 ~~~y~kGe~I~r-EGDp-~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffG 233 (281)
...+.+|.-.-. ..++ .+++.+|++|++++.. +|++ ..|++||++=
T Consensus 62 ~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~-------~g~~----~~L~~Gd~~y 109 (260)
T TIGR03214 62 IVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTA-------EGET----HELREGGYAY 109 (260)
T ss_pred EEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEE-------CCEE----EEECCCCEEE
Confidence 345667653322 2233 3789999999999864 3343 5799999873
No 49
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=41.14 E-value=61 Score=29.03 Aligned_cols=73 Identities=14% Similarity=0.141 Sum_probs=50.9
Q ss_pred hcceeEEecCCCeEEccCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceechhhHHHhhcCCCCCCCCCc
Q 023527 173 DVVKPAVFTERSYIIQEENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSGEELIAWAKAGHNSSNLPIS 252 (281)
Q Consensus 173 ~~l~~~~y~kGe~I~rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffGE~lL~w~l~~~s~~~~p~s 252 (281)
.++...++++|..+-.......++.+|++|.+. + ++ ..+.+||+.=.. +.+
T Consensus 127 ~~v~Ll~i~pG~~~p~H~H~G~E~tlVLeG~f~----d-----e~------g~y~~Gd~i~~p--------------~~~ 177 (215)
T TIGR02451 127 ARVRLLYIEAGQSIPQHTHKGFELTLVLHGAFS----D-----ET------GVYGVGDFEEAD--------------GSV 177 (215)
T ss_pred cEEEEEEECCCCccCCCcCCCcEEEEEEEEEEE----c-----CC------CccCCCeEEECC--------------CCC
Confidence 356778999999999999999999999999963 3 21 237899986321 112
Q ss_pred ceEEEEc--ccEEEEEEcHHHHHH
Q 023527 253 TKTIQAL--TKVEAFVLMAYDLKQ 274 (281)
Q Consensus 253 ~~TV~Al--tdvell~L~~edL~~ 274 (281)
..+.+|. ++|-++++.-..|++
T Consensus 178 ~H~p~a~~~~~Cicl~v~dapl~f 201 (215)
T TIGR02451 178 QHQPRTVSGGDCLCLAVLDAPLRF 201 (215)
T ss_pred CcCcccCCCCCeEEEEEecCCccc
Confidence 2345565 448888876655543
No 50
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=41.08 E-value=33 Score=29.47 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=22.4
Q ss_pred CcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCcee
Q 023527 192 PIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFS 232 (281)
Q Consensus 192 p~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDff 232 (281)
.-|+|.+|++|++.+.. +|+. ...+|||++
T Consensus 94 ~YDEi~~VlEG~L~i~~-------~G~~----~~A~~GDvi 123 (152)
T PF06249_consen 94 TYDEIKYVLEGTLEISI-------DGQT----VTAKPGDVI 123 (152)
T ss_dssp SSEEEEEEEEEEEEEEE-------TTEE----EEEETT-EE
T ss_pred ecceEEEEEEeEEEEEE-------CCEE----EEEcCCcEE
Confidence 45899999999998862 4453 568999986
No 51
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=39.22 E-value=60 Score=26.65 Aligned_cols=44 Identities=14% Similarity=0.211 Sum_probs=31.0
Q ss_pred EEecCCCeEEccCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceec
Q 023527 178 AVFTERSYIIQEENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSG 233 (281)
Q Consensus 178 ~~y~kGe~I~rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffG 233 (281)
-.-++|+.=..-++ +++.-|++|++++... +|+. ..+++||.|=
T Consensus 50 We~TpG~~r~~y~~--~E~chil~G~v~~T~d------~Ge~----v~~~aGD~~~ 93 (116)
T COG3450 50 WECTPGKFRVTYDE--DEFCHILEGRVEVTPD------GGEP----VEVRAGDSFV 93 (116)
T ss_pred EEecCccceEEccc--ceEEEEEeeEEEEECC------CCeE----EEEcCCCEEE
Confidence 34556666555555 8899999999987543 4443 6799999873
No 52
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=38.86 E-value=1.5e+02 Score=26.17 Aligned_cols=51 Identities=10% Similarity=0.066 Sum_probs=32.9
Q ss_pred eEEecCCCeE---------EccCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceec
Q 023527 177 PAVFTERSYI---------IQEENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSG 233 (281)
Q Consensus 177 ~~~y~kGe~I---------~rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffG 233 (281)
...+.+|... +++...-.++|+|++|+......+ .+|.. .. ..++|||.+=
T Consensus 72 ~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~----~~G~~-~~-~~v~pGd~v~ 131 (191)
T PRK04190 72 TTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQD----PEGEA-RW-IEMEPGTVVY 131 (191)
T ss_pred EEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEec----CCCcE-EE-EEECCCCEEE
Confidence 3556777742 444444569999999999977654 12321 11 5789999863
No 53
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=38.51 E-value=1.1e+02 Score=28.26 Aligned_cols=32 Identities=19% Similarity=0.494 Sum_probs=24.5
Q ss_pred CCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCcee
Q 023527 190 ENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFS 232 (281)
Q Consensus 190 GDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDff 232 (281)
++-++.+.||++|.+.+.. +|++ ..|++|++.
T Consensus 80 d~~ae~~lfVv~Ge~tv~~-------~G~t----h~l~eggya 111 (264)
T COG3257 80 DEGAETFLFVVSGEITVKA-------EGKT----HALREGGYA 111 (264)
T ss_pred CCcceEEEEEEeeeEEEEE-------cCeE----EEeccCCeE
Confidence 3458899999999988755 4464 568999874
No 54
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=35.78 E-value=53 Score=30.20 Aligned_cols=29 Identities=24% Similarity=0.380 Sum_probs=23.0
Q ss_pred cCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCcee
Q 023527 193 IDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFS 232 (281)
Q Consensus 193 ~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDff 232 (281)
-+++.+|++|++++.. +|++ ..++|||++
T Consensus 175 ~dEi~YVLEGe~~l~I-------dG~t----~~l~pGDvl 203 (233)
T PRK15457 175 YDEIDMVLEGELHVRH-------EGET----MIAKAGDVM 203 (233)
T ss_pred ceEEEEEEEeEEEEEE-------CCEE----EEeCCCcEE
Confidence 4689999999999876 3353 579999986
No 55
>PF12852 Cupin_6: Cupin
Probab=33.44 E-value=1.4e+02 Score=25.40 Aligned_cols=44 Identities=20% Similarity=0.279 Sum_probs=30.1
Q ss_pred ecCCCeEEccCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCcee
Q 023527 180 FTERSYIIQEENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFS 232 (281)
Q Consensus 180 y~kGe~I~rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDff 232 (281)
+...=-+-.++.+.-.+++|.+|...+...+ ++.. ..+.+||++
T Consensus 22 ~~~~W~~~~~~~~~~~fh~V~~G~~~l~~~~-----~~~~----~~L~~GDiv 65 (186)
T PF12852_consen 22 LCGPWGLRFPGSPGASFHVVLRGSCWLRVPG-----GGEP----IRLEAGDIV 65 (186)
T ss_pred EeCCcEEeccCCCceEEEEEECCeEEEEEcC-----CCCe----EEecCCCEE
Confidence 3344444555555789999999999987543 2332 568999987
No 56
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=32.67 E-value=70 Score=24.42 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=20.8
Q ss_pred ccCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCcee
Q 023527 188 QEENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFS 232 (281)
Q Consensus 188 rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDff 232 (281)
....+--.+.+|++|+..... +|++ ..++|||++
T Consensus 18 ~h~h~~~~i~~v~~G~~~~~~-------~~~~----~~l~~g~~~ 51 (136)
T PF02311_consen 18 PHWHDFYEIIYVLSGEGTLHI-------DGQE----YPLKPGDLF 51 (136)
T ss_dssp EETT-SEEEEEEEEE-EEEEE-------TTEE----EEE-TT-EE
T ss_pred CEECCCEEEEEEeCCEEEEEE-------CCEE----EEEECCEEE
Confidence 344456678999999988744 3343 678999987
No 57
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=31.00 E-value=1.5e+02 Score=28.62 Aligned_cols=78 Identities=10% Similarity=0.060 Sum_probs=50.4
Q ss_pred EEecCCCeEEccCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceechhhHHHhhcCCCCCCCCCcceEEE
Q 023527 178 AVFTERSYIIQEENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSGEELIAWAKAGHNSSNLPISTKTIQ 257 (281)
Q Consensus 178 ~~y~kGe~I~rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffGE~lL~w~l~~~s~~~~p~s~~TV~ 257 (281)
+..++|..--..-.....+|+|++|+-++.. ||+. ...++||+|--- .|+ ..+..
T Consensus 255 q~L~~G~~t~~~r~T~s~Vf~VieG~G~s~i-------g~~~----~~W~~gD~f~vP--sW~------------~~~h~ 309 (335)
T TIGR02272 255 QLLPKGFRTATYRSTDATVFCVVEGRGQVRI-------GDAV----FRFSPKDVFVVP--SWH------------PVRFE 309 (335)
T ss_pred hccCCCCCCCCccccccEEEEEEeCeEEEEE-------CCEE----EEecCCCEEEEC--CCC------------cEecc
Confidence 4555666555555567899999999888765 3332 468999998643 221 12334
Q ss_pred EcccEEEEEEcHHHHHHHHhhhc
Q 023527 258 ALTKVEAFVLMAYDLKQVLLNID 280 (281)
Q Consensus 258 Altdvell~L~~edL~~l~~~f~ 280 (281)
+-+++-+|.++-.-+.+-+.-||
T Consensus 310 a~~da~Lf~~~D~Pll~~LGl~r 332 (335)
T TIGR02272 310 ASDDAVLFSFSDRPVQQKLGLFR 332 (335)
T ss_pred cCCCeEEEEecCHHHHHHhccce
Confidence 55677788888777766555444
No 58
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=30.87 E-value=1.1e+02 Score=30.50 Aligned_cols=45 Identities=9% Similarity=0.020 Sum_probs=29.4
Q ss_pred EEecCCCeEE-ccCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceec
Q 023527 178 AVFTERSYII-QEENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSG 233 (281)
Q Consensus 178 ~~y~kGe~I~-rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffG 233 (281)
..++||..+= +.....++.++|++|++++.. ||++ ..+++||.+-
T Consensus 381 ~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~-------dg~~----~~l~~GDsi~ 426 (468)
T TIGR01479 381 ITVKPGEKLSLQMHHHRAEHWIVVSGTARVTI-------GDET----LLLTENESTY 426 (468)
T ss_pred EEECCCCccCccccCCCceEEEEEeeEEEEEE-------CCEE----EEecCCCEEE
Confidence 4566676431 122234567799999999875 3353 5699999874
No 59
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=30.77 E-value=73 Score=24.55 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=20.2
Q ss_pred eEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceec
Q 023527 195 QMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSG 233 (281)
Q Consensus 195 ~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffG 233 (281)
-.++|++|.|++...+ .+ -.+.+|+.|=
T Consensus 35 ~vF~V~~G~v~Vti~~-------~~----f~v~~G~~F~ 62 (85)
T PF11699_consen 35 MVFYVIKGKVEVTIHE-------TS----FVVTKGGSFQ 62 (85)
T ss_dssp EEEEEEESEEEEEETT-------EE----EEEETT-EEE
T ss_pred EEEEEEeCEEEEEEcC-------cE----EEEeCCCEEE
Confidence 4688999999987644 21 4689999883
No 60
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=29.08 E-value=1.2e+02 Score=30.62 Aligned_cols=46 Identities=11% Similarity=0.002 Sum_probs=29.7
Q ss_pred eeEEecCCCeEE-ccCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCcee
Q 023527 176 KPAVFTERSYII-QEENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFS 232 (281)
Q Consensus 176 ~~~~y~kGe~I~-rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDff 232 (281)
+...+.+|...- +.....++.++|++|++++...+ ++ ..++|||.+
T Consensus 388 ~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg-------~~----~~L~~GDSi 434 (478)
T PRK15460 388 KRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDG-------DI----KLLGENESI 434 (478)
T ss_pred EEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECC-------EE----EEecCCCEE
Confidence 334566665331 11123458899999999987643 53 569999986
No 61
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=24.75 E-value=1.1e+02 Score=29.57 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=34.1
Q ss_pred EEecCCCeEEccCCCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceech
Q 023527 178 AVFTERSYIIQEENPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSGE 234 (281)
Q Consensus 178 ~~y~kGe~I~rEGDp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffGE 234 (281)
+.+.+|+.--.--.....++||++|+=.-+..+ | +. ..+++||+|=-
T Consensus 86 q~l~pGe~~~~HRht~sAl~~vveG~G~~t~V~-----g-~~----~~~~~gD~~~t 132 (335)
T TIGR02272 86 QLILPGEVAPSHRHTQSALRFIVEGKGAFTAVD-----G-ER----TTMHPGDFIIT 132 (335)
T ss_pred EEeCCCCCCCccccccceEEEEEEcCceEEEEC-----C-EE----EeeeCCCEEEe
Confidence 567888877666677889999999985433334 3 42 56899999854
No 62
>PLN00212 glutelin; Provisional
Probab=22.12 E-value=1.4e+02 Score=30.36 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=28.2
Q ss_pred cCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceec
Q 023527 193 IDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSG 233 (281)
Q Consensus 193 ~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffG 233 (281)
++++.+|++|.+++-..+ ..|++.+ ...|++||+|=
T Consensus 369 A~eI~yV~rG~g~vqvV~----~~g~~vf-~~~L~~GdvfV 404 (493)
T PLN00212 369 AHSVVYITQGRARVQVVS----NNGKTVF-NGVLRPGQLLI 404 (493)
T ss_pred CCEEEEEeecceEEEEEc----CCCCEEE-EEEEcCCCEEE
Confidence 899999999999988766 2555443 38899999983
No 63
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=20.91 E-value=1.9e+02 Score=24.92 Aligned_cols=61 Identities=15% Similarity=0.191 Sum_probs=33.2
Q ss_pred CCcCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCceechhhHHHhhcCCCCCCCCCcceEEEEcccEEEEEEcHH
Q 023527 191 NPIDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFSGEELIAWAKAGHNSSNLPISTKTIQALTKVEAFVLMAY 270 (281)
Q Consensus 191 Dp~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDffGE~lL~w~l~~~s~~~~p~s~~TV~Altdvell~L~~e 270 (281)
++.++++.-++|.+.+-..+ +|+... ..+++||.|=- |+ +.|.|+ +=-.++-.+++.++
T Consensus 51 ne~eE~FyQ~kG~m~Lkv~e-----~g~~kd--i~I~EGe~fLL--------P~---~vpHsP---~R~~~tiGLViEr~ 109 (151)
T PF06052_consen 51 NETEEFFYQLKGDMCLKVVE-----DGKFKD--IPIREGEMFLL--------PA---NVPHSP---QRPADTIGLVIERK 109 (151)
T ss_dssp -SS-EEEEEEES-EEEEEEE-----TTEEEE--EEE-TTEEEEE---------T---T--EEE---EE-TT-EEEEEEE-
T ss_pred CCcceEEEEEeCcEEEEEEe-----CCceEE--EEeCCCcEEec--------CC---CCCCCC---cCCCCcEEEEEEec
Confidence 45679999999999887766 555433 57999999832 11 223332 23367777777765
Q ss_pred HH
Q 023527 271 DL 272 (281)
Q Consensus 271 dL 272 (281)
.-
T Consensus 110 R~ 111 (151)
T PF06052_consen 110 RP 111 (151)
T ss_dssp --
T ss_pred cC
Confidence 43
No 64
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=20.05 E-value=1.6e+02 Score=25.70 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=22.0
Q ss_pred cCeEEEEEEcEEEEEEeccccccCCCcceeeeeecCCcee
Q 023527 193 IDQMLFVLQGKLWTYTSRRVTELSSNSGNLNNHLEGGDFS 232 (281)
Q Consensus 193 ~~~myfIl~G~V~v~~~~~~~~~gGr~~~~~~~L~~GDff 232 (281)
.|+.-+|++|++.+...+ ++ .+-+|||+.
T Consensus 118 yDe~d~VlEGrL~V~~~g-------~t----v~a~aGDvi 146 (176)
T COG4766 118 YDEIDYVLEGRLHVRIDG-------RT----VIAGAGDVI 146 (176)
T ss_pred ccceeEEEeeeEEEEEcC-------Ce----EecCCCcEE
Confidence 467778999999987743 43 468899985
Done!