BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023528
         (281 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
           Iii Effector Xcv3220 (Xopl)
          Length = 328

 Score = 38.1 bits (87), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 68  ERIWIFGCPNLESFPE--GGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRS 125
           E + + GC  L ++P   GG     L RL +  C NL  LP  IH LT L  L++R C +
Sbjct: 232 EELDLRGCTALRNYPPIFGG--RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289

Query: 126 LVSFP 130
           L   P
Sbjct: 290 LSRLP 294



 Score = 33.9 bits (76), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 52/140 (37%), Gaps = 16/140 (11%)

Query: 102 LKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFA 161
           L+ALP  I +L  L  L IR C  L   PE    T+        + +     EW      
Sbjct: 139 LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW------ 192

Query: 162 CLRELRIRGGCPDLVSSPRFPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLK 221
                    G   L +S     +L  L I + P L  L     +L  LE LDL  C  L+
Sbjct: 193 --------TGIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALR 243

Query: 222 YFSKQ-GLPKSLLRLGIDDC 240
            +    G    L RL + DC
Sbjct: 244 NYPPIFGGRAPLKRLILKDC 263


>pdb|1A5D|A Chain A, Gammae Crystallin From Rat Lens
 pdb|1A5D|B Chain B, Gammae Crystallin From Rat Lens
 pdb|1ZGT|A Chain A, Structure Of Hydrogenated Rat Gamma E Crystallin In H2o
 pdb|1ZIE|A Chain A, Hydrogenated Gammae Crystallin In D2o Solvent
 pdb|1ZIQ|A Chain A, Deuterated Gammae Crystallin In D2o Solvent
 pdb|1ZIR|A Chain A, Deuterated Gammae Crystallin In H2o Solvent
          Length = 173

 Score = 34.3 bits (77), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 18/93 (19%), Positives = 41/93 (44%), Gaps = 1/93 (1%)

Query: 160 FACLRELRIRGGCPDLVSSPRFPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPK 219
           F+    +R+  GC  L   P F      L   D P  +      +++ S   +  S+  +
Sbjct: 29  FSRCNSVRVDSGCWMLYEQPNFTGCQYFLRRGDYPDYQQWMGFSDSVRSCRLIPHSSSHR 88

Query: 220 LKYFSKQGLPKSLLRLGIDDCPLMEKRWIKADY 252
           ++ + ++     ++ +  DDCP ++ R+  +D+
Sbjct: 89  IRIYEREDYRGQMVEI-TDDCPHLQDRFHFSDF 120


>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
           Complexed With Its Receptor
 pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
           Complexed With Its Receptor
          Length = 252

 Score = 28.9 bits (63), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 34/150 (22%), Positives = 61/150 (40%), Gaps = 14/150 (9%)

Query: 28  LEHLEVTHCSNLAFLSWNG--NLPRALKYLYVK--------DCSKLESLAERIW-IFGCP 76
           L  + +   +NL +++     NLP  L+YL +         D  K+ SL + +  I    
Sbjct: 81  LHEIRIEKANNLLYINPEAFQNLPN-LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI 139

Query: 77  NLESFPEGGLPSTKLTRLTIWKCKN-LKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFP 135
           N+ +             + +W  KN ++ + NC  N T L  L + +  +L   P D F 
Sbjct: 140 NIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFH 199

Query: 136 TNLQSLVVDDLKIS-KPLFEWGLDRFACLR 164
                +++D  +     L  +GL+    LR
Sbjct: 200 GASGPVILDISRTRIHSLPSYGLENLKKLR 229


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.140    0.448 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,191,872
Number of Sequences: 62578
Number of extensions: 330224
Number of successful extensions: 672
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 666
Number of HSP's gapped (non-prelim): 23
length of query: 281
length of database: 14,973,337
effective HSP length: 98
effective length of query: 183
effective length of database: 8,840,693
effective search space: 1617846819
effective search space used: 1617846819
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)