Query 023528
Match_columns 281
No_of_seqs 145 out of 1568
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 04:44:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023528.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023528hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.9 2.6E-20 5.7E-25 183.6 18.5 215 26-246 634-909 (1153)
2 PLN03210 Resistant to P. syrin 99.8 2.5E-19 5.3E-24 176.8 17.3 235 2-244 634-944 (1153)
3 PLN00113 leucine-rich repeat r 99.8 6.9E-18 1.5E-22 165.2 15.5 236 2-241 93-367 (968)
4 PLN00113 leucine-rich repeat r 99.8 1.3E-17 2.7E-22 163.4 15.6 235 3-241 70-319 (968)
5 PRK15387 E3 ubiquitin-protein 99.5 2.7E-12 5.9E-17 120.2 16.3 203 5-240 204-412 (788)
6 KOG4194 Membrane glycoprotein 99.4 9.2E-15 2E-19 128.5 -0.7 203 26-239 149-374 (873)
7 PRK15387 E3 ubiquitin-protein 99.4 5E-12 1.1E-16 118.4 13.1 211 3-242 223-457 (788)
8 KOG4194 Membrane glycoprotein 99.4 7.5E-13 1.6E-17 116.7 6.9 211 22-241 74-328 (873)
9 PRK15370 E3 ubiquitin-protein 99.3 4.3E-12 9.3E-17 119.2 10.1 213 3-241 179-399 (754)
10 PRK15370 E3 ubiquitin-protein 99.3 1.3E-11 2.9E-16 115.9 9.8 216 2-242 199-427 (754)
11 KOG0444 Cytoskeletal regulator 99.3 2.4E-13 5.1E-18 120.9 -2.8 85 81-169 214-299 (1255)
12 KOG0472 Leucine-rich repeat pr 99.3 2.4E-13 5.3E-18 114.8 -2.7 115 1-122 182-306 (565)
13 KOG0472 Leucine-rich repeat pr 99.2 3.3E-13 7.2E-18 114.0 -7.1 133 78-217 172-307 (565)
14 KOG0444 Cytoskeletal regulator 99.1 2.5E-12 5.4E-17 114.5 -4.2 213 2-225 126-380 (1255)
15 KOG0618 Serine/threonine phosp 99.1 7.8E-12 1.7E-16 115.4 -2.1 100 136-241 383-487 (1081)
16 KOG0617 Ras suppressor protein 99.0 9.3E-12 2E-16 94.0 -4.2 151 26-200 33-189 (264)
17 KOG0617 Ras suppressor protein 99.0 9.4E-12 2E-16 94.0 -4.3 144 76-225 43-190 (264)
18 KOG0618 Serine/threonine phosp 98.9 1.3E-10 2.8E-15 107.5 -2.7 184 26-219 287-488 (1081)
19 PRK15386 type III secretion pr 98.8 4E-08 8.7E-13 85.5 9.7 62 2-69 52-113 (426)
20 PRK15386 type III secretion pr 98.8 5.4E-08 1.2E-12 84.7 10.2 139 89-246 72-216 (426)
21 KOG4658 Apoptotic ATPase [Sign 98.8 5.8E-09 1.3E-13 99.9 4.4 205 26-249 545-789 (889)
22 KOG4341 F-box protein containi 98.7 1.6E-10 3.4E-15 98.4 -6.0 241 3-246 139-442 (483)
23 KOG4341 F-box protein containi 98.7 2.2E-10 4.7E-15 97.6 -5.7 217 26-245 138-416 (483)
24 KOG4237 Extracellular matrix p 98.7 1.1E-09 2.4E-14 92.7 -2.2 90 146-239 259-355 (498)
25 cd00116 LRR_RI Leucine-rich re 98.6 3.1E-09 6.7E-14 91.2 -1.9 32 27-60 24-61 (319)
26 cd00116 LRR_RI Leucine-rich re 98.5 1.5E-08 3.3E-13 87.0 -0.7 248 2-275 23-317 (319)
27 KOG4658 Apoptotic ATPase [Sign 98.5 1.9E-07 4.2E-12 89.7 5.6 172 26-200 571-787 (889)
28 KOG4237 Extracellular matrix p 98.5 7.9E-09 1.7E-13 87.7 -3.4 222 13-242 56-334 (498)
29 KOG3207 Beta-tubulin folding c 98.4 9.2E-08 2E-12 82.3 1.7 153 86-242 143-313 (505)
30 PF14580 LRR_9: Leucine-rich r 98.4 2.9E-07 6.3E-12 71.5 3.8 124 26-170 19-149 (175)
31 KOG0532 Leucine-rich repeat (L 98.4 2E-08 4.4E-13 88.9 -3.5 155 77-240 109-270 (722)
32 PF14580 LRR_9: Leucine-rich r 98.4 4.7E-07 1E-11 70.4 4.3 77 90-170 20-97 (175)
33 KOG3207 Beta-tubulin folding c 98.3 1.1E-07 2.3E-12 81.9 -0.4 192 2-216 121-335 (505)
34 COG4886 Leucine-rich repeat (L 98.2 1.6E-06 3.5E-11 76.9 4.8 130 80-217 154-287 (394)
35 COG4886 Leucine-rich repeat (L 98.2 3E-06 6.5E-11 75.2 6.2 158 77-241 127-288 (394)
36 KOG1259 Nischarin, modulator o 98.1 6.4E-07 1.4E-11 73.9 0.2 182 26-217 214-409 (490)
37 KOG2120 SCF ubiquitin ligase, 98.0 2.2E-07 4.7E-12 76.5 -3.6 130 88-218 233-374 (419)
38 PF13855 LRR_8: Leucine rich r 98.0 1.1E-05 2.3E-10 51.4 4.6 31 185-216 3-34 (61)
39 KOG1259 Nischarin, modulator o 98.0 6E-07 1.3E-11 74.1 -1.9 55 2-59 284-338 (490)
40 KOG0532 Leucine-rich repeat (L 98.0 1.8E-07 4E-12 83.0 -5.4 156 77-241 86-245 (722)
41 PF13855 LRR_8: Leucine rich r 98.0 1.3E-05 2.7E-10 51.0 4.3 55 161-218 1-60 (61)
42 KOG2120 SCF ubiquitin ligase, 98.0 4.5E-07 9.7E-12 74.7 -3.3 131 111-242 232-375 (419)
43 PLN03150 hypothetical protein; 97.7 9.7E-05 2.1E-09 69.3 7.7 108 90-199 419-531 (623)
44 PLN03150 hypothetical protein; 97.7 0.00017 3.6E-09 67.8 8.1 110 114-225 419-533 (623)
45 KOG3665 ZYG-1-like serine/thre 97.4 5.6E-05 1.2E-09 71.2 1.0 122 90-216 123-259 (699)
46 KOG1909 Ran GTPase-activating 97.3 9.4E-05 2E-09 62.4 1.5 233 26-280 30-313 (382)
47 PF12799 LRR_4: Leucine Rich r 97.2 0.00043 9.3E-09 40.7 3.4 41 183-225 1-41 (44)
48 KOG1859 Leucine-rich repeat pr 97.2 6.4E-06 1.4E-10 75.5 -6.6 102 134-243 185-292 (1096)
49 KOG3665 ZYG-1-like serine/thre 97.2 0.00041 8.9E-09 65.5 4.9 128 111-241 120-261 (699)
50 PF12799 LRR_4: Leucine Rich r 97.2 0.00047 1E-08 40.5 3.4 34 26-61 1-35 (44)
51 KOG1859 Leucine-rich repeat pr 97.0 6.8E-06 1.5E-10 75.4 -8.4 124 2-147 164-290 (1096)
52 KOG0531 Protein phosphatase 1, 97.0 0.00023 5E-09 63.6 0.5 31 185-216 234-264 (414)
53 KOG1947 Leucine rich repeat pr 96.9 7.2E-05 1.6E-09 67.8 -3.7 151 88-246 268-443 (482)
54 KOG0531 Protein phosphatase 1, 96.8 0.00027 6E-09 63.1 -0.1 128 86-223 115-247 (414)
55 KOG1644 U2-associated snRNP A' 96.8 0.0043 9.3E-08 48.8 6.0 100 136-242 42-152 (233)
56 KOG1909 Ran GTPase-activating 96.6 0.00022 4.9E-09 60.2 -2.0 200 26-242 58-310 (382)
57 KOG1947 Leucine rich repeat pr 96.2 0.00052 1.1E-08 62.2 -2.7 40 135-175 268-308 (482)
58 KOG1644 U2-associated snRNP A' 95.9 0.026 5.7E-07 44.5 6.1 98 88-192 41-149 (233)
59 KOG2982 Uncharacterized conser 95.9 0.0033 7.1E-08 52.4 1.2 79 26-122 71-155 (418)
60 PF00560 LRR_1: Leucine Rich R 95.0 0.019 4.1E-07 28.1 1.6 20 90-110 1-20 (22)
61 KOG3864 Uncharacterized conser 94.8 0.0063 1.4E-07 47.9 -0.6 81 90-170 102-185 (221)
62 PF13306 LRR_5: Leucine rich r 94.7 0.24 5.2E-06 36.0 7.8 29 184-215 82-111 (129)
63 KOG2982 Uncharacterized conser 93.5 0.053 1.1E-06 45.5 2.4 17 229-245 248-264 (418)
64 KOG2123 Uncharacterized conser 93.2 0.0038 8.2E-08 51.6 -4.7 59 111-170 39-97 (388)
65 KOG2739 Leucine-rich acidic nu 93.1 0.063 1.4E-06 43.9 2.1 82 88-170 64-152 (260)
66 KOG3864 Uncharacterized conser 92.6 0.015 3.2E-07 45.8 -2.0 38 205-242 149-188 (221)
67 PF13306 LRR_5: Leucine rich r 92.3 1.1 2.5E-05 32.3 8.0 77 88-170 11-90 (129)
68 PF13504 LRR_7: Leucine rich r 92.0 0.12 2.7E-06 23.4 1.5 10 90-99 2-11 (17)
69 KOG4579 Leucine-rich repeat (L 92.0 0.011 2.3E-07 43.8 -3.2 59 157-218 49-111 (177)
70 KOG2739 Leucine-rich acidic nu 91.5 0.18 3.9E-06 41.3 3.0 99 90-194 44-154 (260)
71 KOG2123 Uncharacterized conser 90.8 0.018 4E-07 47.7 -3.3 55 112-170 18-72 (388)
72 KOG4579 Leucine-rich repeat (L 89.2 0.036 7.7E-07 41.2 -2.6 55 113-170 53-109 (177)
73 smart00367 LRR_CC Leucine-rich 87.1 0.47 1E-05 24.0 1.6 16 207-222 2-17 (26)
74 COG5238 RNA1 Ran GTPase-activa 86.5 1.2 2.7E-05 37.2 4.4 178 26-217 30-252 (388)
75 COG5238 RNA1 Ran GTPase-activa 71.7 3.2 7E-05 34.8 2.3 35 26-61 58-103 (388)
76 smart00369 LRR_TYP Leucine-ric 71.1 3.2 6.8E-05 20.7 1.4 18 207-225 2-19 (26)
77 smart00370 LRR Leucine-rich re 71.1 3.2 6.8E-05 20.7 1.4 18 207-225 2-19 (26)
78 smart00364 LRR_BAC Leucine-ric 61.7 6 0.00013 20.1 1.3 16 184-200 3-18 (26)
79 PF13516 LRR_6: Leucine Rich r 56.9 8.5 0.00018 18.7 1.4 12 89-100 2-13 (24)
80 PF05725 FNIP: FNIP Repeat; I 45.2 43 0.00094 19.1 3.4 10 134-143 32-41 (44)
81 smart00365 LRR_SD22 Leucine-ri 33.7 38 0.00082 17.1 1.6 15 184-199 3-17 (26)
82 smart00368 LRR_RI Leucine rich 30.8 35 0.00076 17.3 1.3 11 27-37 3-13 (28)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=2.6e-20 Score=183.62 Aligned_cols=215 Identities=24% Similarity=0.363 Sum_probs=121.5
Q ss_pred CcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccc---------eeecCCCCCccCCCCCCCCCCccEEEe
Q 023528 26 ATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER---------IWIFGCPNLESFPEGGLPSTKLTRLTI 96 (281)
Q Consensus 26 ~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~---------L~l~~~~~l~~l~~~~~~~~~L~~L~l 96 (281)
++|+.|+++++..+..+|.+..+++ |+.|++.+|..++.+|.. +++++|..++.+|... .+++|++|++
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip~ls~l~~-Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~L 711 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIPDLSMATN-LETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNL 711 (1153)
T ss_pred CCCCEEECCCCCCcCcCCccccCCc-ccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeC
Confidence 4555555555555555555555555 555555555555554433 5555555555555433 3445555555
Q ss_pred ccCcccccccc--------------------cC------------------------------cCCCCccEEeecCCcCC
Q 023528 97 WKCKNLKALPN--------------------CI------------------------------HNLTSLLHLEIRECRSL 126 (281)
Q Consensus 97 ~~c~~l~~lp~--------------------~~------------------------------~~l~~L~~L~l~~~~~l 126 (281)
++|..+..+|. .+ ..+++|+.|++++|+.+
T Consensus 712 sgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l 791 (1153)
T PLN03210 712 SGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL 791 (1153)
T ss_pred CCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCc
Confidence 55544333321 11 00123333444443333
Q ss_pred cccCCC-CCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCCCCCCccEEeccCCCCCccccccCCC
Q 023528 127 VSFPED-GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPRFPASLTQLGISDMPTLKCLSSVGEN 205 (281)
Q Consensus 127 ~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~ 205 (281)
..+|.. +.+++|+.|++.+|..++.+|.. ..+++|+.|++++ |..+..+|..+.+++.|++++ +.++.+|.....
T Consensus 792 ~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~--~~L~sL~~L~Ls~-c~~L~~~p~~~~nL~~L~Ls~-n~i~~iP~si~~ 867 (1153)
T PLN03210 792 VELPSSIQNLHKLEHLEIENCINLETLPTG--INLESLESLDLSG-CSRLRTFPDISTNISDLNLSR-TGIEEVPWWIEK 867 (1153)
T ss_pred cccChhhhCCCCCCEEECCCCCCcCeeCCC--CCccccCEEECCC-CCccccccccccccCEeECCC-CCCccChHHHhc
Confidence 334432 34455555555555555555431 2455555566655 555555555455666666666 566677744478
Q ss_pred CCCcCEEeccCCCCcccccCC-CCCCCCcEEecCCCchHHHH
Q 023528 206 LTSLETLDLSNCPKLKYFSKQ-GLPKSLLRLGIDDCPLMEKR 246 (281)
Q Consensus 206 l~~L~~L~l~~c~~l~~i~~~-~~~~~L~~L~l~~c~~l~~~ 246 (281)
+++|++|++++|+++..++.. ..+++|+.+++.+|..|...
T Consensus 868 l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 868 FSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred CCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 889999999999999988763 33678899999999888643
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.82 E-value=2.5e-19 Score=176.82 Aligned_cols=235 Identities=26% Similarity=0.353 Sum_probs=171.2
Q ss_pred ccceeecccCCCCCcccCCCCCccCcCceeeccCCcCcccccc-CCCcCCcCcEEEecCCcchhccccc--------eee
Q 023528 2 KQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSW-NGNLPRALKYLYVKDCSKLESLAER--------IWI 72 (281)
Q Consensus 2 ~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~l~~~L~~L~l~~~~~l~~~p~~--------L~l 72 (281)
++|+.++++++..++.+ |.....++|+.|++++|..+..+|. ++.+++ |+.|++++|..++.+|.. +++
T Consensus 634 ~~Lk~L~Ls~~~~l~~i-p~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~-L~~L~L~~c~~L~~Lp~~i~l~sL~~L~L 711 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEI-PDLSMATNLETLKLSDCSSLVELPSSIQYLNK-LEDLDMSRCENLEILPTGINLKSLYRLNL 711 (1153)
T ss_pred CCCCEEECCCCCCcCcC-CccccCCcccEEEecCCCCccccchhhhccCC-CCEEeCCCCCCcCccCCcCCCCCCCEEeC
Confidence 45666666666666666 4444445777777777666665554 455666 666666666666665543 445
Q ss_pred cCCCCCccCC--------------------CCC------------------------------CCCCCccEEEeccCccc
Q 023528 73 FGCPNLESFP--------------------EGG------------------------------LPSTKLTRLTIWKCKNL 102 (281)
Q Consensus 73 ~~~~~l~~l~--------------------~~~------------------------------~~~~~L~~L~l~~c~~l 102 (281)
++|..++.+| ... ..+++|+.|++++|..+
T Consensus 712 sgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l 791 (1153)
T PLN03210 712 SGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL 791 (1153)
T ss_pred CCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCc
Confidence 5554433332 110 01357888889998888
Q ss_pred ccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC--
Q 023528 103 KALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR-- 180 (281)
Q Consensus 103 ~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-- 180 (281)
..+|.+++++++|+.|++.+|..++.+|....+++|+.|++++|..+..++. ..++|+.|++++ +.++.+|.
T Consensus 792 ~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~----~~~nL~~L~Ls~--n~i~~iP~si 865 (1153)
T PLN03210 792 VELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD----ISTNISDLNLSR--TGIEEVPWWI 865 (1153)
T ss_pred cccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc----cccccCEeECCC--CCCccChHHH
Confidence 8899999999999999999999999999877889999999999998877763 246899999998 67778876
Q ss_pred -CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCCCC--------------CCCCcEEecCCCchHH
Q 023528 181 -FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGL--------------PKSLLRLGIDDCPLME 244 (281)
Q Consensus 181 -~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~~~--------------~~~L~~L~l~~c~~l~ 244 (281)
..++|+.|++.+|+.++.+|.....+++|+.+++++|..+..++..+. .++...+.+.+|.++.
T Consensus 866 ~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 866 EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLD 944 (1153)
T ss_pred hcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCC
Confidence 567999999999999999986568899999999999998876644221 1223445677777664
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.77 E-value=6.9e-18 Score=165.19 Aligned_cols=236 Identities=15% Similarity=0.094 Sum_probs=105.9
Q ss_pred ccceeecccCCCCCcccCCCCC--ccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccc---------e
Q 023528 2 KQDISRSSSGSTSRTPFSSENE--LPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER---------I 70 (281)
Q Consensus 2 ~~l~~l~~~~~~~l~~~~~~~~--~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~---------L 70 (281)
++|+.|+++++.--..+ |... ..++|++|++++|.....+|. +.+++ |++|++++|...+.+|.. |
T Consensus 93 ~~L~~L~Ls~n~~~~~i-p~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~-L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 169 (968)
T PLN00113 93 PYIQTINLSNNQLSGPI-PDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPN-LETLDLSNNMLSGEIPNDIGSFSSLKVL 169 (968)
T ss_pred CCCCEEECCCCccCCcC-ChHHhccCCCCCEEECcCCccccccCc-cccCC-CCEEECcCCcccccCChHHhcCCCCCEE
Confidence 45666666665422245 3222 224666666666553223332 34555 555555555433333322 4
Q ss_pred eecCCCCCccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC-CCCCCcCeEEecCCCCc
Q 023528 71 WIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLKIS 149 (281)
Q Consensus 71 ~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~~ 149 (281)
+++++.....+|..+..+++|++|++++|.....+|..+..+++|++|+++++.....+|.. +.+++|++|++++|...
T Consensus 170 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 249 (968)
T PLN00113 170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT 249 (968)
T ss_pred ECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceec
Confidence 44444433344444444555555555554444444444555555555555443322233322 33444444444443322
Q ss_pred cccch-----------------------hhhccCCCcceEEeecCCCCCccCCC---CCCCccEEeccCCCCCccccccC
Q 023528 150 KPLFE-----------------------WGLDRFACLRELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLKCLSSVG 203 (281)
Q Consensus 150 ~~~~~-----------------------~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~ 203 (281)
...+. ..+..+++|++|++++ |.....+|. ..++|+.|+++++...+.+|..+
T Consensus 250 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~ 328 (968)
T PLN00113 250 GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD-NSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL 328 (968)
T ss_pred cccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcC-CeeccCCChhHcCCCCCcEEECCCCccCCcCChhH
Confidence 22222 1334444455555544 322223332 23345555555533223344222
Q ss_pred CCCCCcCEEeccCCCCcccccC-CCCCCCCcEEecCCCc
Q 023528 204 ENLTSLETLDLSNCPKLKYFSK-QGLPKSLLRLGIDDCP 241 (281)
Q Consensus 204 ~~l~~L~~L~l~~c~~l~~i~~-~~~~~~L~~L~l~~c~ 241 (281)
..+++|++|++++|.....+|. .+..++|+.|++++|.
T Consensus 329 ~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 329 TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence 4555555555555433333332 1223455666665554
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.76 E-value=1.3e-17 Score=163.36 Aligned_cols=235 Identities=16% Similarity=0.060 Sum_probs=165.0
Q ss_pred cceeecccCCCCCcc-cCCCCCccCcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccc-------eee
Q 023528 3 QDISRSSSGSTSRTP-FSSENELPATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAER-------IWI 72 (281)
Q Consensus 3 ~l~~l~~~~~~~l~~-~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~-------L~l 72 (281)
++.+|++++.. +.. +++...-.++|++|++++|.....+|. +..+.+ |++|+++++...+.+|.+ |++
T Consensus 70 ~v~~L~L~~~~-i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~-L~~L~Ls~n~l~~~~p~~~l~~L~~L~L 147 (968)
T PLN00113 70 RVVSIDLSGKN-ISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSS-LRYLNLSNNNFTGSIPRGSIPNLETLDL 147 (968)
T ss_pred cEEEEEecCCC-ccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCC-CCEEECcCCccccccCccccCCCCEEEC
Confidence 56778887643 332 312112236999999999874346665 447888 999999998866666654 888
Q ss_pred cCCCCCccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC-CCCCCcCeEEecCCCCccc
Q 023528 73 FGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLKISKP 151 (281)
Q Consensus 73 ~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~~~~ 151 (281)
+++.....+|..+..+++|++|++++|.....+|..+..+++|++|+++++.....+|.. +.+++|+.|++++|.....
T Consensus 148 s~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 227 (968)
T PLN00113 148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE 227 (968)
T ss_pred cCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCc
Confidence 888666678888888999999999998777788889999999999999987665566654 6789999999999766556
Q ss_pred cchhhhccCCCcceEEeecCCCCCccCCC---CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccC-CC
Q 023528 152 LFEWGLDRFACLRELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSK-QG 227 (281)
Q Consensus 152 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~-~~ 227 (281)
++. .+.++++|++|++++ |.....+|. ..++|+.|+++++...+.+|..+..+++|++|++++|.....+|. ..
T Consensus 228 ~p~-~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 305 (968)
T PLN00113 228 IPY-EIGGLTSLNHLDLVY-NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI 305 (968)
T ss_pred CCh-hHhcCCCCCEEECcC-ceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc
Confidence 664 688999999999998 544444554 455777777777543345553446666777777776543333333 11
Q ss_pred CCCCCcEEecCCCc
Q 023528 228 LPKSLLRLGIDDCP 241 (281)
Q Consensus 228 ~~~~L~~L~l~~c~ 241 (281)
.+++|++|++.+|.
T Consensus 306 ~l~~L~~L~l~~n~ 319 (968)
T PLN00113 306 QLQNLEILHLFSNN 319 (968)
T ss_pred CCCCCcEEECCCCc
Confidence 23455555555543
No 5
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.45 E-value=2.7e-12 Score=120.17 Aligned_cols=203 Identities=26% Similarity=0.309 Sum_probs=95.3
Q ss_pred eeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccc------eeecCCCCC
Q 023528 5 ISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER------IWIFGCPNL 78 (281)
Q Consensus 5 ~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~------L~l~~~~~l 78 (281)
..|+++.+ +++.+ |. .++++|+.|.+.++. ++.+|.. .++ |++|+++++ .+..+|.. |++.++ .+
T Consensus 204 ~~LdLs~~-~LtsL-P~-~l~~~L~~L~L~~N~-Lt~LP~l--p~~-Lk~LdLs~N-~LtsLP~lp~sL~~L~Ls~N-~L 274 (788)
T PRK15387 204 AVLNVGES-GLTTL-PD-CLPAHITTLVIPDNN-LTSLPAL--PPE-LRTLEVSGN-QLTSLPVLPPGLLELSIFSN-PL 274 (788)
T ss_pred cEEEcCCC-CCCcC-Cc-chhcCCCEEEccCCc-CCCCCCC--CCC-CcEEEecCC-ccCcccCcccccceeeccCC-ch
Confidence 45566654 56777 43 344577778777654 6666642 344 777777775 34444422 444443 23
Q ss_pred ccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhc
Q 023528 79 ESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLD 158 (281)
Q Consensus 79 ~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 158 (281)
..+|.. .++|+.|++++| .+..+|. .+++|+.|+++++ .+..+|. .+.+|+.|.+.+| .++.+|.
T Consensus 275 ~~Lp~l---p~~L~~L~Ls~N-~Lt~LP~---~p~~L~~LdLS~N-~L~~Lp~--lp~~L~~L~Ls~N-~L~~LP~---- 339 (788)
T PRK15387 275 THLPAL---PSGLCKLWIFGN-QLTSLPV---LPPGLQELSVSDN-QLASLPA--LPSELCKLWAYNN-QLTSLPT---- 339 (788)
T ss_pred hhhhhc---hhhcCEEECcCC-ccccccc---cccccceeECCCC-ccccCCC--CcccccccccccC-ccccccc----
Confidence 344431 135556666663 3444443 2345666666553 3444432 2334445554442 2233331
Q ss_pred cCCCcceEEeecCCCCCccCCCCCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCCCCCCCCcEEecC
Q 023528 159 RFACLRELRIRGGCPDLVSSPRFPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKSLLRLGID 238 (281)
Q Consensus 159 ~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~l~ 238 (281)
...+|+.|++++ +.+..+|..+.+|+.|++++ +.+..+|. ...+|+.|+++++ .+..+|. .+++|+.|+++
T Consensus 340 lp~~Lq~LdLS~--N~Ls~LP~lp~~L~~L~Ls~-N~L~~LP~---l~~~L~~LdLs~N-~Lt~LP~--l~s~L~~LdLS 410 (788)
T PRK15387 340 LPSGLQELSVSD--NQLASLPTLPSELYKLWAYN-NRLTSLPA---LPSGLKELIVSGN-RLTSLPV--LPSELKELMVS 410 (788)
T ss_pred cccccceEecCC--CccCCCCCCCcccceehhhc-cccccCcc---cccccceEEecCC-cccCCCC--cccCCCEEEcc
Confidence 112455555554 34444444344444444444 33444441 1233444444442 3333332 22344444444
Q ss_pred CC
Q 023528 239 DC 240 (281)
Q Consensus 239 ~c 240 (281)
++
T Consensus 411 ~N 412 (788)
T PRK15387 411 GN 412 (788)
T ss_pred CC
Confidence 43
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.44 E-value=9.2e-15 Score=128.50 Aligned_cols=203 Identities=16% Similarity=0.228 Sum_probs=111.6
Q ss_pred CcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccc----------eeecCCCCCccCCCCCCC-CCCcc
Q 023528 26 ATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAER----------IWIFGCPNLESFPEGGLP-STKLT 92 (281)
Q Consensus 26 ~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~----------L~l~~~~~l~~l~~~~~~-~~~L~ 92 (281)
+.|+.||++.+. +..++. +..-++ +++|+|.++. ++.+..+ +.++. .++..+|.-.++ +++|+
T Consensus 149 ~alrslDLSrN~-is~i~~~sfp~~~n-i~~L~La~N~-It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~ 224 (873)
T KOG4194|consen 149 PALRSLDLSRNL-ISEIPKPSFPAKVN-IKKLNLASNR-ITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLE 224 (873)
T ss_pred hhhhhhhhhhch-hhcccCCCCCCCCC-ceEEeecccc-ccccccccccccchheeeeccc-CcccccCHHHhhhcchhh
Confidence 588888888765 555543 555556 8888888754 4443222 44444 356677765555 88899
Q ss_pred EEEeccCcccccc-cccCcCCCCccEEeecCCcCCcccCCCC--CCCCcCeEEecCCCCccccchhhhccCCCcceEEee
Q 023528 93 RLTIWKCKNLKAL-PNCIHNLTSLLHLEIRECRSLVSFPEDG--FPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIR 169 (281)
Q Consensus 93 ~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 169 (281)
.|++..+ .++.+ .-.|.++++|+.+.+.. +.+..+..+. .+.++++|+++. +.+..+...++.+++.|+.|+++
T Consensus 225 ~LdLnrN-~irive~ltFqgL~Sl~nlklqr-N~I~kL~DG~Fy~l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS 301 (873)
T KOG4194|consen 225 SLDLNRN-RIRIVEGLTFQGLPSLQNLKLQR-NDISKLDDGAFYGLEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLS 301 (873)
T ss_pred hhhcccc-ceeeehhhhhcCchhhhhhhhhh-cCcccccCcceeeecccceeeccc-chhhhhhcccccccchhhhhccc
Confidence 9988884 33332 13556777777777765 3455554442 345666666665 44444444455556666666665
Q ss_pred cCCCCCccCCC----CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCCCC--CCCCcEEecCC
Q 023528 170 GGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQGL--PKSLLRLGIDD 239 (281)
Q Consensus 170 ~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~~~--~~~L~~L~l~~ 239 (281)
+ +.+..+.. ..++|+.|+++. +.++++++.. ..+..|++|+++. +.+..+.+..+ .++|++|++..
T Consensus 302 ~--NaI~rih~d~WsftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e~af~~lssL~~LdLr~ 374 (873)
T KOG4194|consen 302 Y--NAIQRIHIDSWSFTQKLKELDLSS-NRITRLDEGSFRVLSQLEELNLSH-NSIDHLAEGAFVGLSSLHKLDLRS 374 (873)
T ss_pred h--hhhheeecchhhhcccceeEeccc-cccccCChhHHHHHHHhhhhcccc-cchHHHHhhHHHHhhhhhhhcCcC
Confidence 5 34443322 334555555555 4555555333 4444555555554 33444333222 34444444433
No 7
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.38 E-value=5e-12 Score=118.42 Aligned_cols=211 Identities=26% Similarity=0.331 Sum_probs=126.4
Q ss_pred cceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccc------eeecCCC
Q 023528 3 QDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER------IWIFGCP 76 (281)
Q Consensus 3 ~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~------L~l~~~~ 76 (281)
.+..|.+++ ..++.+ |. .+++|++|++++|. ++.+|.. .++ |+.|++.++. +..+|.. |++.++
T Consensus 223 ~L~~L~L~~-N~Lt~L-P~--lp~~Lk~LdLs~N~-LtsLP~l--p~s-L~~L~Ls~N~-L~~Lp~lp~~L~~L~Ls~N- 292 (788)
T PRK15387 223 HITTLVIPD-NNLTSL-PA--LPPELRTLEVSGNQ-LTSLPVL--PPG-LLELSIFSNP-LTHLPALPSGLCKLWIFGN- 292 (788)
T ss_pred CCCEEEccC-CcCCCC-CC--CCCCCcEEEecCCc-cCcccCc--ccc-cceeeccCCc-hhhhhhchhhcCEEECcCC-
Confidence 466777776 457888 43 46799999999874 7777752 344 9999888874 4444332 666665
Q ss_pred CCccCCCCCCCCCCccEEEeccCcccccccccCcC-----------------CCCccEEeecCCcCCcccCCCCCCCCcC
Q 023528 77 NLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHN-----------------LTSLLHLEIRECRSLVSFPEDGFPTNLQ 139 (281)
Q Consensus 77 ~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~-----------------l~~L~~L~l~~~~~l~~l~~~~~~~~L~ 139 (281)
.+..+|.. .++|+.|++++| .+..+|..... ..+|++|++++ +.+..+|. .+++|+
T Consensus 293 ~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~-N~Ls~LP~--lp~~L~ 365 (788)
T PRK15387 293 QLTSLPVL---PPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSD-NQLASLPT--LPSELY 365 (788)
T ss_pred cccccccc---ccccceeECCCC-ccccCCCCcccccccccccCccccccccccccceEecCC-CccCCCCC--CCcccc
Confidence 45666642 357888888885 45555432111 12344444444 23333332 233444
Q ss_pred eEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCCCCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCC
Q 023528 140 SLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPRFPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPK 219 (281)
Q Consensus 140 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~ 219 (281)
.|++++ +.+..+|. ...+|+.|++++ +.+..+|..+.+|+.|++++ +.+..+|. .+.+|+.|++++ ++
T Consensus 366 ~L~Ls~-N~L~~LP~----l~~~L~~LdLs~--N~Lt~LP~l~s~L~~LdLS~-N~LssIP~---l~~~L~~L~Ls~-Nq 433 (788)
T PRK15387 366 KLWAYN-NRLTSLPA----LPSGLKELIVSG--NRLTSLPVLPSELKELMVSG-NRLTSLPM---LPSGLLSLSVYR-NQ 433 (788)
T ss_pred eehhhc-cccccCcc----cccccceEEecC--CcccCCCCcccCCCEEEccC-CcCCCCCc---chhhhhhhhhcc-Cc
Confidence 444444 22333331 123577777776 45666666566777777777 46777762 234677778877 56
Q ss_pred cccccCC-CCCCCCcEEecCCCch
Q 023528 220 LKYFSKQ-GLPKSLLRLGIDDCPL 242 (281)
Q Consensus 220 l~~i~~~-~~~~~L~~L~l~~c~~ 242 (281)
++.+|.. ..+++|+.|++++++.
T Consensus 434 Lt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 434 LTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred ccccChHHhhccCCCeEECCCCCC
Confidence 7777752 2357888888888763
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.38 E-value=7.5e-13 Score=116.68 Aligned_cols=211 Identities=17% Similarity=0.216 Sum_probs=123.8
Q ss_pred CCccCcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccc---------eeecCCCCCccCC-CCCCCCC
Q 023528 22 NELPATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAER---------IWIFGCPNLESFP-EGGLPST 89 (281)
Q Consensus 22 ~~~~~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~---------L~l~~~~~l~~l~-~~~~~~~ 89 (281)
+.+|+.-+.|+++++. +..+.. |..+|+ |+++.+..+. +..+|.. |++.++. +.++. .....++
T Consensus 74 g~lp~~t~~LdlsnNk-l~~id~~~f~nl~n-Lq~v~l~~N~-Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L~~l~ 149 (873)
T KOG4194|consen 74 GFLPSQTQTLDLSNNK-LSHIDFEFFYNLPN-LQEVNLNKNE-LTRIPRFGHESGHLEKLDLRHNL-ISSVTSEELSALP 149 (873)
T ss_pred CcCccceeeeeccccc-cccCcHHHHhcCCc-ceeeeeccch-hhhcccccccccceeEEeeeccc-cccccHHHHHhHh
Confidence 4555677777877655 554432 566777 8887777643 5555544 4443321 22221 1222245
Q ss_pred CccEEEeccCccccccc-ccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceE
Q 023528 90 KLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLREL 166 (281)
Q Consensus 90 ~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 166 (281)
.|+.|+++. ..+.++| ..+..=..+++|++++ +.++.+..+ ..+.+|.++.++. +.++.+|...|.++++|+.|
T Consensus 150 alrslDLSr-N~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~L 226 (873)
T KOG4194|consen 150 ALRSLDLSR-NLISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESL 226 (873)
T ss_pred hhhhhhhhh-chhhcccCCCCCCCCCceEEeecc-ccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhh
Confidence 666666666 3445554 2333334566666665 455555443 2345666666665 55666666666666666666
Q ss_pred EeecCC----------------------CCCccCCC----CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCC
Q 023528 167 RIRGGC----------------------PDLVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPK 219 (281)
Q Consensus 167 ~l~~~~----------------------~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~ 219 (281)
++...- +.+..+.+ ...++++|++.. +.+..+...| -++++|+.|++++ +.
T Consensus 227 dLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~-Na 304 (873)
T KOG4194|consen 227 DLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSY-NA 304 (873)
T ss_pred hccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeeccc-chhhhhhcccccccchhhhhccch-hh
Confidence 665400 22222221 356778888887 6777777666 7888888888888 56
Q ss_pred cccccCC--CCCCCCcEEecCCCc
Q 023528 220 LKYFSKQ--GLPKSLLRLGIDDCP 241 (281)
Q Consensus 220 l~~i~~~--~~~~~L~~L~l~~c~ 241 (281)
+..+... .+.++|+.|++++..
T Consensus 305 I~rih~d~WsftqkL~~LdLs~N~ 328 (873)
T KOG4194|consen 305 IQRIHIDSWSFTQKLKELDLSSNR 328 (873)
T ss_pred hheeecchhhhcccceeEeccccc
Confidence 7766553 347788888887764
No 9
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.34 E-value=4.3e-12 Score=119.19 Aligned_cols=213 Identities=21% Similarity=0.252 Sum_probs=130.8
Q ss_pred cceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccc-------eeecCC
Q 023528 3 QDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER-------IWIFGC 75 (281)
Q Consensus 3 ~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~-------L~l~~~ 75 (281)
+...|.+++. .++.+ |. .+++.|+.|+++++. +..+|.. ..++ |++|++++|. ++.+|.. +++++|
T Consensus 179 ~~~~L~L~~~-~LtsL-P~-~Ip~~L~~L~Ls~N~-LtsLP~~-l~~n-L~~L~Ls~N~-LtsLP~~l~~~L~~L~Ls~N 251 (754)
T PRK15370 179 NKTELRLKIL-GLTTI-PA-CIPEQITTLILDNNE-LKSLPEN-LQGN-IKTLYANSNQ-LTSIPATLPDTIQEMELSIN 251 (754)
T ss_pred CceEEEeCCC-CcCcC-Cc-ccccCCcEEEecCCC-CCcCChh-hccC-CCEEECCCCc-cccCChhhhccccEEECcCC
Confidence 4567777764 57788 53 356799999999875 7777752 2345 9999999865 5555543 566655
Q ss_pred CCCccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchh
Q 023528 76 PNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEW 155 (281)
Q Consensus 76 ~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~ 155 (281)
. +..+|.... ++|++|++++| .+..+|..+. ++|+.|+++++ .++.+|. ..+++|+.|++++| .++.+|..
T Consensus 252 ~-L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~-~lp~sL~~L~Ls~N-~Lt~LP~~ 322 (754)
T PRK15370 252 R-ITELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDN-SIRTLPA-HLPSGITHLNVQSN-SLTALPET 322 (754)
T ss_pred c-cCcCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCC-ccccCcc-cchhhHHHHHhcCC-ccccCCcc
Confidence 3 445554433 36777777763 5555665442 46777777764 4555543 23456677777663 34444421
Q ss_pred hhccCCCcceEEeecCCCCCccCCC-CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCCCCCCCCcE
Q 023528 156 GLDRFACLRELRIRGGCPDLVSSPR-FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKSLLR 234 (281)
Q Consensus 156 ~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~ 234 (281)
..++|+.|++++ +.++.+|. .+++|+.|++++ +.+..+|... .++|++|++++| .+..+|.. ++.+|+.
T Consensus 323 ---l~~sL~~L~Ls~--N~Lt~LP~~l~~sL~~L~Ls~-N~L~~LP~~l--p~~L~~LdLs~N-~Lt~LP~~-l~~sL~~ 392 (754)
T PRK15370 323 ---LPPGLKTLEAGE--NALTSLPASLPPELQVLDVSK-NQITVLPETL--PPTITTLDVSRN-ALTNLPEN-LPAALQI 392 (754)
T ss_pred ---ccccceeccccC--CccccCChhhcCcccEEECCC-CCCCcCChhh--cCCcCEEECCCC-cCCCCCHh-HHHHHHH
Confidence 235677777776 34555665 556777777777 4566666322 246777777774 45566542 2345677
Q ss_pred EecCCCc
Q 023528 235 LGIDDCP 241 (281)
Q Consensus 235 L~l~~c~ 241 (281)
|++.++.
T Consensus 393 LdLs~N~ 399 (754)
T PRK15370 393 MQASRNN 399 (754)
T ss_pred HhhccCC
Confidence 7776654
No 10
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.28 E-value=1.3e-11 Score=115.91 Aligned_cols=216 Identities=20% Similarity=0.316 Sum_probs=156.9
Q ss_pred ccceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccc-------eeecC
Q 023528 2 KQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER-------IWIFG 74 (281)
Q Consensus 2 ~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~-------L~l~~ 74 (281)
+.+..|.++++ .++.+ |... +++|+.|++++|. +..+|. .++.+|+.|++++|. +..+|.. |++++
T Consensus 199 ~~L~~L~Ls~N-~LtsL-P~~l-~~nL~~L~Ls~N~-LtsLP~--~l~~~L~~L~Ls~N~-L~~LP~~l~s~L~~L~Ls~ 271 (754)
T PRK15370 199 EQITTLILDNN-ELKSL-PENL-QGNIKTLYANSNQ-LTSIPA--TLPDTIQEMELSINR-ITELPERLPSALQSLDLFH 271 (754)
T ss_pred cCCcEEEecCC-CCCcC-Chhh-ccCCCEEECCCCc-cccCCh--hhhccccEEECcCCc-cCcCChhHhCCCCEEECcC
Confidence 35677888875 58888 5443 3599999999876 777775 244449999999986 5566543 77775
Q ss_pred CCCCccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccch
Q 023528 75 CPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFE 154 (281)
Q Consensus 75 ~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~ 154 (281)
+ .+..+|..+. ++|+.|++++| .+..+|..+. ++|++|+++++ .+..+|. ..+++|+.|.+++| .++.+|.
T Consensus 272 N-~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~N-~Lt~LP~-~l~~sL~~L~Ls~N-~Lt~LP~ 342 (754)
T PRK15370 272 N-KISCLPENLP--EELRYLSVYDN-SIRTLPAHLP--SGITHLNVQSN-SLTALPE-TLPPGLKTLEAGEN-ALTSLPA 342 (754)
T ss_pred C-ccCccccccC--CCCcEEECCCC-ccccCcccch--hhHHHHHhcCC-ccccCCc-cccccceeccccCC-ccccCCh
Confidence 4 6777876554 48999999996 5667775543 57889999884 5566654 34579999999985 4555664
Q ss_pred hhhccCCCcceEEeecCCCCCccCCC-CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCC-----CC
Q 023528 155 WGLDRFACLRELRIRGGCPDLVSSPR-FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQ-----GL 228 (281)
Q Consensus 155 ~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~-----~~ 228 (281)
.+ .++|+.|++++ +.+..+|. .+++|+.|++++ +.+..+|.... .+|+.|++++ +++..+|.. +.
T Consensus 343 -~l--~~sL~~L~Ls~--N~L~~LP~~lp~~L~~LdLs~-N~Lt~LP~~l~--~sL~~LdLs~-N~L~~LP~sl~~~~~~ 413 (754)
T PRK15370 343 -SL--PPELQVLDVSK--NQITVLPETLPPTITTLDVSR-NALTNLPENLP--AALQIMQASR-NNLVRLPESLPHFRGE 413 (754)
T ss_pred -hh--cCcccEEECCC--CCCCcCChhhcCCcCEEECCC-CcCCCCCHhHH--HHHHHHhhcc-CCcccCchhHHHHhhc
Confidence 22 36899999998 46777776 667999999999 57888885432 3689999999 467777652 12
Q ss_pred CCCCcEEecCCCch
Q 023528 229 PKSLLRLGIDDCPL 242 (281)
Q Consensus 229 ~~~L~~L~l~~c~~ 242 (281)
.+.+..+++.+.+.
T Consensus 414 ~~~l~~L~L~~Npl 427 (754)
T PRK15370 414 GPQPTRIIVEYNPF 427 (754)
T ss_pred CCCccEEEeeCCCc
Confidence 46788899988874
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.27 E-value=2.4e-13 Score=120.88 Aligned_cols=85 Identities=19% Similarity=0.274 Sum_probs=37.7
Q ss_pred CCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC-CCCCCcCeEEecCCCCccccchhhhcc
Q 023528 81 FPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLKISKPLFEWGLDR 159 (281)
Q Consensus 81 l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~ 159 (281)
+|.++-.+.||..++++. ..+..+|..+-.+++|+.|++++ +.++.+... +.-.+|++|+++. +.++.+|. .+.+
T Consensus 214 ~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~-avcK 289 (1255)
T KOG0444|consen 214 IPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSG-NKITELNMTEGEWENLETLNLSR-NQLTVLPD-AVCK 289 (1255)
T ss_pred CCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCc-CceeeeeccHHHHhhhhhhcccc-chhccchH-HHhh
Confidence 444444455555555555 34444455555555555555554 233333222 1223444444444 33344433 2334
Q ss_pred CCCcceEEee
Q 023528 160 FACLRELRIR 169 (281)
Q Consensus 160 l~~L~~L~l~ 169 (281)
++.|+.|.+.
T Consensus 290 L~kL~kLy~n 299 (1255)
T KOG0444|consen 290 LTKLTKLYAN 299 (1255)
T ss_pred hHHHHHHHhc
Confidence 4444444443
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.26 E-value=2.4e-13 Score=114.81 Aligned_cols=115 Identities=22% Similarity=0.213 Sum_probs=68.0
Q ss_pred CccceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccc----------e
Q 023528 1 MKQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER----------I 70 (281)
Q Consensus 1 ~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~----------L 70 (281)
||+++.++.+. .-++.+||.-....+|.-|+++.+. +..+|.|++... |++|+++.+. ++.+|+. +
T Consensus 182 m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lPef~gcs~-L~Elh~g~N~-i~~lpae~~~~L~~l~vL 257 (565)
T KOG0472|consen 182 MKRLKHLDCNS-NLLETLPPELGGLESLELLYLRRNK-IRFLPEFPGCSL-LKELHVGENQ-IEMLPAEHLKHLNSLLVL 257 (565)
T ss_pred HHHHHhcccch-hhhhcCChhhcchhhhHHHHhhhcc-cccCCCCCccHH-HHHHHhcccH-HHhhHHHHhcccccceee
Confidence 45555555554 2355666655555677777777655 556666655555 6666655432 3333322 5
Q ss_pred eecCCCCCccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecC
Q 023528 71 WIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRE 122 (281)
Q Consensus 71 ~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~ 122 (281)
++..+ +++.+|..++.+.+|++|++++ ..++.+|..++++ +|+.|.+.|
T Consensus 258 DLRdN-klke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leG 306 (565)
T KOG0472|consen 258 DLRDN-KLKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEG 306 (565)
T ss_pred ecccc-ccccCchHHHHhhhhhhhcccC-CccccCCcccccc-eeeehhhcC
Confidence 55553 5666777766666777777776 4566666666666 666665554
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.15 E-value=3.3e-13 Score=114.02 Aligned_cols=133 Identities=26% Similarity=0.289 Sum_probs=81.0
Q ss_pred CccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhh
Q 023528 78 LESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGL 157 (281)
Q Consensus 78 l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 157 (281)
++.+|.....++.|++|+... ..++.+|+.++.+.+|+-|++.. ..+..+|++..++.|..+++.. +.+..++....
T Consensus 172 l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~-Nki~~lPef~gcs~L~Elh~g~-N~i~~lpae~~ 248 (565)
T KOG0472|consen 172 LKALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRR-NKIRFLPEFPGCSLLKELHVGE-NQIEMLPAEHL 248 (565)
T ss_pred hhhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhh-cccccCCCCCccHHHHHHHhcc-cHHHhhHHHHh
Confidence 334444333355566665555 34566666666666666666665 4556666655666666666654 55566666666
Q ss_pred ccCCCcceEEeecCCCCCccCCC---CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCC
Q 023528 158 DRFACLRELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNC 217 (281)
Q Consensus 158 ~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c 217 (281)
.+++++..||+.+ +.++++|. ...+|.+||+++ +.+..+|.+.+++ +|+.|-+.|+
T Consensus 249 ~~L~~l~vLDLRd--Nklke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 249 KHLNSLLVLDLRD--NKLKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGN 307 (565)
T ss_pred cccccceeeeccc--cccccCchHHHHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCC
Confidence 6677777777776 56666665 455666777776 5666666555655 6666666663
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.11 E-value=2.5e-12 Score=114.50 Aligned_cols=213 Identities=20% Similarity=0.232 Sum_probs=151.4
Q ss_pred ccceeecccCCCCCcccCCCCCcc--CcCceeeccCCcCcccccc-------------------------CCCcCCcCcE
Q 023528 2 KQDISRSSSGSTSRTPFSSENELP--ATLEHLEVTHCSNLAFLSW-------------------------NGNLPRALKY 54 (281)
Q Consensus 2 ~~l~~l~~~~~~~l~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~-------------------------~~~l~~~L~~ 54 (281)
|.++-|++++ .++..+ |..-+. +.|-.|+++.+. ++.+|+ +.+++. |++
T Consensus 126 Kn~iVLNLS~-N~IetI-Pn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmts-L~v 201 (1255)
T KOG0444|consen 126 KNSIVLNLSY-NNIETI-PNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTS-LSV 201 (1255)
T ss_pred cCcEEEEccc-CccccC-CchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchh-hhh
Confidence 4566677775 456667 433332 445556666554 555554 233444 555
Q ss_pred EEecCCcc-hhccccc---------eeecCCCCCccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCc
Q 023528 55 LYVKDCSK-LESLAER---------IWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECR 124 (281)
Q Consensus 55 L~l~~~~~-l~~~p~~---------L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 124 (281)
|++++.+. +..+|.+ ++++. .++..+|....++++|+.|++++ ..++++....+...+|+.|+++. +
T Consensus 202 Lhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSr-N 278 (1255)
T KOG0444|consen 202 LHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSG-NKITELNMTEGEWENLETLNLSR-N 278 (1255)
T ss_pred hhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCc-CceeeeeccHHHHhhhhhhcccc-c
Confidence 55555432 2334444 55554 56788899999999999999999 56777766777788999999998 5
Q ss_pred CCcccCCC-CCCCCcCeEEecCCCCc-cccchhhhccCCCcceEEeecCCCCCccCCC---CCCCccEEeccCCCCCccc
Q 023528 125 SLVSFPED-GFPTNLQSLVVDDLKIS-KPLFEWGLDRFACLRELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLKCL 199 (281)
Q Consensus 125 ~l~~l~~~-~~~~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l 199 (281)
.++.+|.. ..++.|+.|...+|... .-+|+ +++++.+|+.+..++ +.+.-+|+ -+..|+.|.+.+ +.+-.+
T Consensus 279 QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPS-GIGKL~~Levf~aan--N~LElVPEglcRC~kL~kL~L~~-NrLiTL 354 (1255)
T KOG0444|consen 279 QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPS-GIGKLIQLEVFHAAN--NKLELVPEGLCRCVKLQKLKLDH-NRLITL 354 (1255)
T ss_pred hhccchHHHhhhHHHHHHHhccCcccccCCcc-chhhhhhhHHHHhhc--cccccCchhhhhhHHHHHhcccc-cceeec
Confidence 78888865 68889999988875433 55665 788999999988887 67777887 456789999987 678788
Q ss_pred cccCCCCCCcCEEeccCCCCcccccC
Q 023528 200 SSVGENLTSLETLDLSNCPKLKYFSK 225 (281)
Q Consensus 200 ~~~~~~l~~L~~L~l~~c~~l~~i~~ 225 (281)
|..+.-++.|+.|++..++++..-|.
T Consensus 355 PeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 355 PEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred hhhhhhcCCcceeeccCCcCccCCCC
Confidence 85557778899999999888765554
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.08 E-value=7.8e-12 Score=115.44 Aligned_cols=100 Identities=23% Similarity=0.262 Sum_probs=52.3
Q ss_pred CCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC---CCCCccEEeccCCCCCccccccCCCCCCcCEE
Q 023528 136 TNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLKCLSSVGENLTSLETL 212 (281)
Q Consensus 136 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L 212 (281)
.+|+.|++++ +.+..+|...+.++..|++|++++ +.++.+|. .+..|++|.... +.+..+| +...+++|+.+
T Consensus 383 ~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSG--NkL~~Lp~tva~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~l 457 (1081)
T KOG0618|consen 383 KHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSG--NKLTTLPDTVANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKVL 457 (1081)
T ss_pred cceeeeeecc-cccccCCHHHHhchHHhHHHhccc--chhhhhhHHHHhhhhhHHHhhcC-Cceeech-hhhhcCcceEE
Confidence 4555555555 444445544455555555555555 44444444 333455555544 4555555 44555666666
Q ss_pred eccCCCCcccccC-CCCC-CCCcEEecCCCc
Q 023528 213 DLSNCPKLKYFSK-QGLP-KSLLRLGIDDCP 241 (281)
Q Consensus 213 ~l~~c~~l~~i~~-~~~~-~~L~~L~l~~c~ 241 (281)
|++. ++++.+.. ...+ ++|++|++++..
T Consensus 458 DlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 458 DLSC-NNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred eccc-chhhhhhhhhhCCCcccceeeccCCc
Confidence 6654 45555433 2234 566666666655
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.00 E-value=9.3e-12 Score=94.01 Aligned_cols=151 Identities=23% Similarity=0.303 Sum_probs=81.1
Q ss_pred CcCceeeccCCcCcccccc-CCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCccccc
Q 023528 26 ATLEHLEVTHCSNLAFLSW-NGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKA 104 (281)
Q Consensus 26 ~~L~~L~l~~~~~l~~l~~-~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~ 104 (281)
+.+..|.++++. +..+|+ ++.+.+ |+.|++.++ .++.+|..+..+++|+.|++.- ..+..
T Consensus 33 s~ITrLtLSHNK-l~~vppnia~l~n-levln~~nn----------------qie~lp~~issl~klr~lnvgm-nrl~~ 93 (264)
T KOG0617|consen 33 SNITRLTLSHNK-LTVVPPNIAELKN-LEVLNLSNN----------------QIEELPTSISSLPKLRILNVGM-NRLNI 93 (264)
T ss_pred hhhhhhhcccCc-eeecCCcHHHhhh-hhhhhcccc----------------hhhhcChhhhhchhhhheecch-hhhhc
Confidence 566677777665 444433 666666 777777653 2445555555566777777665 44555
Q ss_pred ccccCcCCCCccEEeecCCcCC-cccCCC-CCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC--
Q 023528 105 LPNCIHNLTSLLHLEIRECRSL-VSFPED-GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR-- 180 (281)
Q Consensus 105 lp~~~~~l~~L~~L~l~~~~~l-~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-- 180 (281)
+|.+|+.++.|+.|++.+...- ..+|.. .++..|+.|.+++ +.+..+|. .++++++|+.|.+.+ +.+-++|.
T Consensus 94 lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~-dvg~lt~lqil~lrd--ndll~lpkei 169 (264)
T KOG0617|consen 94 LPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPP-DVGKLTNLQILSLRD--NDLLSLPKEI 169 (264)
T ss_pred CccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCCh-hhhhhcceeEEeecc--CchhhCcHHH
Confidence 6777777777777777653221 123322 2334555555555 33444443 355555555555555 33333333
Q ss_pred -CCCCccEEeccCCCCCcccc
Q 023528 181 -FPASLTQLGISDMPTLKCLS 200 (281)
Q Consensus 181 -~~~~L~~L~l~~c~~l~~l~ 200 (281)
..++|++|.+.+ +.++.+|
T Consensus 170 g~lt~lrelhiqg-nrl~vlp 189 (264)
T KOG0617|consen 170 GDLTRLRELHIQG-NRLTVLP 189 (264)
T ss_pred HHHHHHHHHhccc-ceeeecC
Confidence 233444555544 3444444
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.00 E-value=9.4e-12 Score=93.99 Aligned_cols=144 Identities=21% Similarity=0.246 Sum_probs=116.2
Q ss_pred CCCccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC-CCCCCcCeEEecCCCCccccch
Q 023528 76 PNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLKISKPLFE 154 (281)
Q Consensus 76 ~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~ 154 (281)
.++..+|..+..+.+|+.|++.+ ..++.+|.++.+++.|++|+++- ..+..+|.+ +.++.|+.|++.+++-......
T Consensus 43 NKl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldltynnl~e~~lp 120 (264)
T KOG0617|consen 43 NKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDLTYNNLNENSLP 120 (264)
T ss_pred CceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhccccccccccCC
Confidence 46778888888899999999998 67889999999999999999974 567777765 7889999999999776644333
Q ss_pred hhhccCCCcceEEeecCCCCCccCCC---CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccC
Q 023528 155 WGLDRFACLRELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSK 225 (281)
Q Consensus 155 ~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~ 225 (281)
..|..++.|+.|.+++ +..+-+|. ..++|+.|.+.+ +.+-++|.+.+.+..|++|.+.+ +.++.+|.
T Consensus 121 gnff~m~tlralyl~d--ndfe~lp~dvg~lt~lqil~lrd-ndll~lpkeig~lt~lrelhiqg-nrl~vlpp 190 (264)
T KOG0617|consen 121 GNFFYMTTLRALYLGD--NDFEILPPDVGKLTNLQILSLRD-NDLLSLPKEIGDLTRLRELHIQG-NRLTVLPP 190 (264)
T ss_pred cchhHHHHHHHHHhcC--CCcccCChhhhhhcceeEEeecc-CchhhCcHHHHHHHHHHHHhccc-ceeeecCh
Confidence 4677888899999998 66666665 678899999999 78888887778999999999999 55655543
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.87 E-value=1.3e-10 Score=107.54 Aligned_cols=184 Identities=21% Similarity=0.208 Sum_probs=110.3
Q ss_pred CcCceeeccCCcCccccccCCC-cCCcCcEEEecCCcchhccccc-----------eeecCCCCCccCCCCC-CCCCCcc
Q 023528 26 ATLEHLEVTHCSNLAFLSWNGN-LPRALKYLYVKDCSKLESLAER-----------IWIFGCPNLESFPEGG-LPSTKLT 92 (281)
Q Consensus 26 ~~L~~L~l~~~~~l~~l~~~~~-l~~~L~~L~l~~~~~l~~~p~~-----------L~l~~~~~l~~l~~~~-~~~~~L~ 92 (281)
++|+.|.+..|. +..+|.+.. +.. |+.|++..+. ++.+|+. +..+ +.++..+|... ...+.|+
T Consensus 287 ~~L~~l~~~~ne-l~yip~~le~~~s-L~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s-~n~l~~lp~~~e~~~~~Lq 362 (1081)
T KOG0618|consen 287 TSLVSLSAAYNE-LEYIPPFLEGLKS-LRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVS-SNKLSTLPSYEENNHAALQ 362 (1081)
T ss_pred hhHHHHHhhhhh-hhhCCCcccccce-eeeeeehhcc-ccccchHHHhhhhHHHHHHhhh-hccccccccccchhhHHHH
Confidence 566666666655 666666544 777 8888888754 6666554 1111 22333333221 2244677
Q ss_pred EEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceEEeec
Q 023528 93 RLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRG 170 (281)
Q Consensus 93 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 170 (281)
.|.+.++..-...-+.+....+|+.|++++ +.+..+|.. ..+..|+.|+++| +.++.++. .+..+..|++|...+
T Consensus 363 ~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~-tva~~~~L~tL~ahs 439 (1081)
T KOG0618|consen 363 ELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSG-NKLTTLPD-TVANLGRLHTLRAHS 439 (1081)
T ss_pred HHHHhcCcccccchhhhccccceeeeeecc-cccccCCHHHHhchHHhHHHhccc-chhhhhhH-HHHhhhhhHHHhhcC
Confidence 777777543333323456677777777777 566677655 4566777777777 56666663 566777777777666
Q ss_pred CCCCCccCCC--CCCCccEEeccCCCCCccccccCCCC-CCcCEEeccCCCC
Q 023528 171 GCPDLVSSPR--FPASLTQLGISDMPTLKCLSSVGENL-TSLETLDLSNCPK 219 (281)
Q Consensus 171 ~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~~~~~~l-~~L~~L~l~~c~~ 219 (281)
+.+..+|+ ..+.|+.+|++. ++++.+-...... ++|++|+++|+.+
T Consensus 440 --N~l~~fPe~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 440 --NQLLSFPELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred --CceeechhhhhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCcc
Confidence 56666776 455777777776 5665432111111 6777777777654
No 19
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.78 E-value=4e-08 Score=85.47 Aligned_cols=62 Identities=23% Similarity=0.408 Sum_probs=47.4
Q ss_pred ccceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccc
Q 023528 2 KQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER 69 (281)
Q Consensus 2 ~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~ 69 (281)
+++..|.+++| .++.+ | .+|++|++|.+++|..++.+|. .+|.+|++|.+++|..+..+|.+
T Consensus 52 ~~l~~L~Is~c-~L~sL-P--~LP~sLtsL~Lsnc~nLtsLP~--~LP~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 52 RASGRLYIKDC-DIESL-P--VLPNELTEITIENCNNLTTLPG--SIPEGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred cCCCEEEeCCC-CCccc-C--CCCCCCcEEEccCCCCcccCCc--hhhhhhhheEccCcccccccccc
Confidence 56778888887 68888 5 5778899999998888877774 35555888888888766666654
No 20
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.77 E-value=5.4e-08 Score=84.68 Aligned_cols=139 Identities=24% Similarity=0.353 Sum_probs=92.7
Q ss_pred CCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCC--CccccchhhhccCCCcceE
Q 023528 89 TKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLK--ISKPLFEWGLDRFACLREL 166 (281)
Q Consensus 89 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~l~~L~~L 166 (281)
++|+.|.+++|..+..+|..+ ..+|++|.+++|..+..+ +++|++|.+.++. .+..+| ++|+.|
T Consensus 72 ~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL-----P~sLe~L~L~~n~~~~L~~LP-------ssLk~L 137 (426)
T PRK15386 72 NELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL-----PESVRSLEIKGSATDSIKNVP-------NGLTSL 137 (426)
T ss_pred CCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc-----ccccceEEeCCCCCcccccCc-------chHhhe
Confidence 379999999999998888655 468999999998766654 4578888887532 223333 367888
Q ss_pred EeecCCCCC--ccCCC-CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCc-ccccCCCCCCCCcEEecCCCch
Q 023528 167 RIRGGCPDL--VSSPR-FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKL-KYFSKQGLPKSLLRLGIDDCPL 242 (281)
Q Consensus 167 ~l~~~~~~~--~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l-~~i~~~~~~~~L~~L~l~~c~~ 242 (281)
.+.+ +... ...+. +|.+|++|++.+|..+ .+|.. -..+|++|.++.+... -.++...+++++ .|++.+|..
T Consensus 138 ~I~~-~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~--LP~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lk 212 (426)
T PRK15386 138 SINS-YNPENQARIDNLISPSLKTLSLTGCSNI-ILPEK--LPESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVL 212 (426)
T ss_pred eccc-cccccccccccccCCcccEEEecCCCcc-cCccc--ccccCcEEEecccccccccCccccccccc-Eechhhhcc
Confidence 8764 2211 22232 6789999999998644 33421 2258899998764311 123444566778 899999876
Q ss_pred HHHH
Q 023528 243 MEKR 246 (281)
Q Consensus 243 l~~~ 246 (281)
+...
T Consensus 213 L~~~ 216 (426)
T PRK15386 213 LSPD 216 (426)
T ss_pred cCHH
Confidence 6543
No 21
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.76 E-value=5.8e-09 Score=99.89 Aligned_cols=205 Identities=21% Similarity=0.196 Sum_probs=122.2
Q ss_pred CcCceeeccCCcC-cccccc--CCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCccc
Q 023528 26 ATLEHLEVTHCSN-LAFLSW--NGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNL 102 (281)
Q Consensus 26 ~~L~~L~l~~~~~-l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l 102 (281)
+.|+.|-+.++.. +..++. |..+|. |++|++++| ..+..+|..+..+-+|++|++++ +.+
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~-LrVLDLs~~---------------~~l~~LP~~I~~Li~LryL~L~~-t~I 607 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPL-LRVLDLSGN---------------SSLSKLPSSIGELVHLRYLDLSD-TGI 607 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcc-eEEEECCCC---------------CccCcCChHHhhhhhhhcccccC-CCc
Confidence 4677776666542 444444 566777 777777664 45566666666667888888888 677
Q ss_pred ccccccCcCCCCccEEeecCCcCCcccCCC-CCCCCcCeEEecCCC-CccccchhhhccCCCcceEEeecCCCC------
Q 023528 103 KALPNCIHNLTSLLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLK-ISKPLFEWGLDRFACLRELRIRGGCPD------ 174 (281)
Q Consensus 103 ~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~------ 174 (281)
..+|.+++.++.|.+|++.....+..++.. ..+++|++|.+.... ..+...-..+..+.+|+.+.+.. +..
T Consensus 608 ~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~-~s~~~~e~l 686 (889)
T KOG4658|consen 608 SHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI-SSVLLLEDL 686 (889)
T ss_pred cccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec-chhHhHhhh
Confidence 788888888888888888776555555443 347788888777643 22222222345555565555543 211
Q ss_pred --------------------CccCCC--CCCCccEEeccCCCCCccccccC------CC-CCCcCEEeccCCCCcccccC
Q 023528 175 --------------------LVSSPR--FPASLTQLGISDMPTLKCLSSVG------EN-LTSLETLDLSNCPKLKYFSK 225 (281)
Q Consensus 175 --------------------~~~~~~--~~~~L~~L~l~~c~~l~~l~~~~------~~-l~~L~~L~l~~c~~l~~i~~ 225 (281)
.+.... ...+|+.|.+.+|+..+... .+ .. ++++..+.+.+|...+....
T Consensus 687 ~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~-~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~ 765 (889)
T KOG4658|consen 687 LGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVI-EWEESLIVLLCFPNLSKVSILNCHMLRDLTW 765 (889)
T ss_pred hhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhc-ccccccchhhhHHHHHHHHhhccccccccch
Confidence 000000 34567777777765432211 11 11 33455555556655555544
Q ss_pred CCCCCCCcEEecCCCchHHHHHhh
Q 023528 226 QGLPKSLLRLGIDDCPLMEKRWIK 249 (281)
Q Consensus 226 ~~~~~~L~~L~l~~c~~l~~~~~~ 249 (281)
..++++|+.|++..|+.++.....
T Consensus 766 ~~f~~~L~~l~l~~~~~~e~~i~~ 789 (889)
T KOG4658|consen 766 LLFAPHLTSLSLVSCRLLEDIIPK 789 (889)
T ss_pred hhccCcccEEEEecccccccCCCH
Confidence 445788999999999877665443
No 22
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.75 E-value=1.6e-10 Score=98.41 Aligned_cols=241 Identities=21% Similarity=0.236 Sum_probs=126.1
Q ss_pred cceeecccCCCCCcccCCCCCcc---CcCceeeccCCcCcccccc--CCC-cCCcCcEEEecCCcchhccc-----cc--
Q 023528 3 QDISRSSSGSTSRTPFSSENELP---ATLEHLEVTHCSNLAFLSW--NGN-LPRALKYLYVKDCSKLESLA-----ER-- 69 (281)
Q Consensus 3 ~l~~l~~~~~~~l~~~~~~~~~~---~~L~~L~l~~~~~l~~l~~--~~~-l~~~L~~L~l~~~~~l~~~p-----~~-- 69 (281)
.+++|++.||..++.- +...+. +++++|.+.+|.+++.... ++. .++ |+++.+..|..+.... ++
T Consensus 139 ~lk~LSlrG~r~v~~s-slrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~-l~~l~L~~c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDS-SLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRK-LRHLNLHSCSSITDVSLKYLAEGCR 216 (483)
T ss_pred ccccccccccccCCcc-hhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcch-hhhhhhcccchhHHHHHHHHHHhhh
Confidence 4678888888876644 333332 7888888888886663322 333 344 7777777776554421 11
Q ss_pred ----eeecCCCCCcc--CCCCCCCCCCccEEEeccCccccc--ccc----------------------cC----cCCCCc
Q 023528 70 ----IWIFGCPNLES--FPEGGLPSTKLTRLTIWKCKNLKA--LPN----------------------CI----HNLTSL 115 (281)
Q Consensus 70 ----L~l~~~~~l~~--l~~~~~~~~~L~~L~l~~c~~l~~--lp~----------------------~~----~~l~~L 115 (281)
+.+++|+.+.. +..-...++.++.+...||..++. +-. .+ ..+..|
T Consensus 217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l 296 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL 296 (483)
T ss_pred hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence 44444443332 111111133444554455543211 000 00 124445
Q ss_pred cEEeecCCcCCcccCCC---CCCCCcCeEEecCCCCccccchhhh-ccCCCcceEEeecCCCCCccCC-----CCCCCcc
Q 023528 116 LHLEIRECRSLVSFPED---GFPTNLQSLVVDDLKISKPLFEWGL-DRFACLRELRIRGGCPDLVSSP-----RFPASLT 186 (281)
Q Consensus 116 ~~L~l~~~~~l~~l~~~---~~~~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~-----~~~~~L~ 186 (281)
+.+..++|..+...+.. ....+|+.+.++.|..+++.....+ .+++.|+.+++.. |..+.+-. ...+.|+
T Consensus 297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~-~~~~~d~tL~sls~~C~~lr 375 (483)
T KOG4341|consen 297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEE-CGLITDGTLASLSRNCPRLR 375 (483)
T ss_pred hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccc-cceehhhhHhhhccCCchhc
Confidence 55555555444333221 3456677777777666544432222 2455666666666 54443321 1455677
Q ss_pred EEeccCCCCCccc-----cccCCCCCCcCEEeccCCCCcccccC--CCCCCCCcEEecCCCchHHHH
Q 023528 187 QLGISDMPTLKCL-----SSVGENLTSLETLDLSNCPKLKYFSK--QGLPKSLLRLGIDDCPLMEKR 246 (281)
Q Consensus 187 ~L~l~~c~~l~~l-----~~~~~~l~~L~~L~l~~c~~l~~i~~--~~~~~~L~~L~l~~c~~l~~~ 246 (281)
.+.+++|..+++- .....+...++.+.+++|+.+.+... ...+++|+.+++.+|....+.
T Consensus 376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~ 442 (483)
T KOG4341|consen 376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKE 442 (483)
T ss_pred cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhh
Confidence 7777777655543 21114555677777777776655332 123567777777777755443
No 23
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.73 E-value=2.2e-10 Score=97.55 Aligned_cols=217 Identities=18% Similarity=0.287 Sum_probs=113.0
Q ss_pred CcCceeeccCCcCcccccc---CCCcCCcCcEEEecCCcchhccccc-----------eeecCCCCCccCCC--CCCCCC
Q 023528 26 ATLEHLEVTHCSNLAFLSW---NGNLPRALKYLYVKDCSKLESLAER-----------IWIFGCPNLESFPE--GGLPST 89 (281)
Q Consensus 26 ~~L~~L~l~~~~~l~~l~~---~~~l~~~L~~L~l~~~~~l~~~p~~-----------L~l~~~~~l~~l~~--~~~~~~ 89 (281)
.-||.|.+++|.....-+. ....|+ +++|.+.+|..+.+.... +++..|..++...- ....++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~Cpn-IehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPN-IEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR 216 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCc-hhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence 4789999999987654332 345677 999999999866543211 55555554443221 223378
Q ss_pred CccEEEeccCccccc--ccccCcCCCCccEEeecCCcCCcc--cC-CCCCCCCcCeEEecCCCCccccc-----------
Q 023528 90 KLTRLTIWKCKNLKA--LPNCIHNLTSLLHLEIRECRSLVS--FP-EDGFPTNLQSLVVDDLKISKPLF----------- 153 (281)
Q Consensus 90 ~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~~~~~l~~--l~-~~~~~~~L~~L~l~~~~~~~~~~----------- 153 (281)
+|++++++.|+.+.. +-.-...+..++.+...||..... +. ..+....+..+++..|+.+++..
T Consensus 217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l 296 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL 296 (483)
T ss_pred hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence 999999999987654 111223555666666666643321 10 01233334444444444443332
Q ss_pred ---------------hhhh-ccCCCcceEEeecCCCCCccCCC-----CCCCccEEeccCCCCCcc--ccccC-CCCCCc
Q 023528 154 ---------------EWGL-DRFACLRELRIRGGCPDLVSSPR-----FPASLTQLGISDMPTLKC--LSSVG-ENLTSL 209 (281)
Q Consensus 154 ---------------~~~~-~~l~~L~~L~l~~~~~~~~~~~~-----~~~~L~~L~l~~c~~l~~--l~~~~-~~l~~L 209 (281)
...+ ++.++|+.+.++. |...++... ..+.|+.+++.+|..+.+ +. +. .+++.|
T Consensus 297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~-c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~-sls~~C~~l 374 (483)
T KOG4341|consen 297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSG-CQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLA-SLSRNCPRL 374 (483)
T ss_pred hhhcccCCCCCchHHHHHHhcCCCceEEEeccc-cchhhhhhhhhhhcCChhhhhhcccccceehhhhHh-hhccCCchh
Confidence 1111 2344555555554 444333222 334455555555433222 11 11 456666
Q ss_pred CEEeccCCCCcccccCCC------CCCCCcEEecCCCchHHH
Q 023528 210 ETLDLSNCPKLKYFSKQG------LPKSLLRLGIDDCPLMEK 245 (281)
Q Consensus 210 ~~L~l~~c~~l~~i~~~~------~~~~L~~L~l~~c~~l~~ 245 (281)
+.+.++.|..+++..... -...++.+.+++|+...+
T Consensus 375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d 416 (483)
T KOG4341|consen 375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD 416 (483)
T ss_pred ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH
Confidence 666666665554431100 024566777777775554
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.70 E-value=1.1e-09 Score=92.72 Aligned_cols=90 Identities=19% Similarity=0.152 Sum_probs=66.7
Q ss_pred CCCccccchhhhccCCCcceEEeecCCCCCccCCC----CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCc
Q 023528 146 LKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKL 220 (281)
Q Consensus 146 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l 220 (281)
|......|..-|..+++|++|++++ +.++.+.+ ....+++|.+.. ++++.+...+ .++..|+.|++.+ +++
T Consensus 259 d~~d~~cP~~cf~~L~~L~~lnlsn--N~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~-N~i 334 (498)
T KOG4237|consen 259 DFPDSICPAKCFKKLPNLRKLNLSN--NKITRIEDGAFEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYD-NQI 334 (498)
T ss_pred cCcCCcChHHHHhhcccceEeccCC--CccchhhhhhhcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecC-Cee
Confidence 3444556666788999999999998 67777654 456788888888 7888887555 8888999999998 677
Q ss_pred ccccCCCC--CCCCcEEecCC
Q 023528 221 KYFSKQGL--PKSLLRLGIDD 239 (281)
Q Consensus 221 ~~i~~~~~--~~~L~~L~l~~ 239 (281)
+.+....+ ..+|..|.+..
T Consensus 335 t~~~~~aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 335 TTVAPGAFQTLFSLSTLNLLS 355 (498)
T ss_pred EEEecccccccceeeeeehcc
Confidence 77766444 45677776644
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.62 E-value=3.1e-09 Score=91.25 Aligned_cols=32 Identities=25% Similarity=0.172 Sum_probs=15.7
Q ss_pred cCceeeccCCcCcc-----ccc-cCCCcCCcCcEEEecCC
Q 023528 27 TLEHLEVTHCSNLA-----FLS-WNGNLPRALKYLYVKDC 60 (281)
Q Consensus 27 ~L~~L~l~~~~~l~-----~l~-~~~~l~~~L~~L~l~~~ 60 (281)
+|++|++++|. ++ .++ .+...+. +++++++++
T Consensus 24 ~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~-l~~l~l~~~ 61 (319)
T cd00116 24 CLQVLRLEGNT-LGEEAAKALASALRPQPS-LKELCLSLN 61 (319)
T ss_pred hccEEeecCCC-CcHHHHHHHHHHHhhCCC-ceEEecccc
Confidence 46666666654 21 111 1334455 666666554
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.51 E-value=1.5e-08 Score=86.96 Aligned_cols=248 Identities=18% Similarity=0.072 Sum_probs=135.1
Q ss_pred ccceeecccCCCCC-----cccCCCCCccCcCceeeccCCcCccc-------c-ccCCCcCCcCcEEEecCCcchhcccc
Q 023528 2 KQDISRSSSGSTSR-----TPFSSENELPATLEHLEVTHCSNLAF-------L-SWNGNLPRALKYLYVKDCSKLESLAE 68 (281)
Q Consensus 2 ~~l~~l~~~~~~~l-----~~~~~~~~~~~~L~~L~l~~~~~l~~-------l-~~~~~l~~~L~~L~l~~~~~l~~~p~ 68 (281)
.+++.+.+.++. + ..++......++++.++++++.. .. + ..++.+++ |++|++++|......+
T Consensus 23 ~~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~~~-~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~- 98 (319)
T cd00116 23 LCLQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLNET-GRIPRGLQSLLQGLTKGCG-LQELDLSDNALGPDGC- 98 (319)
T ss_pred hhccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEecccccc-CCcchHHHHHHHHHHhcCc-eeEEEccCCCCChhHH-
Confidence 346777787765 3 22311112225688998887652 21 1 11555778 9999998876322211
Q ss_pred ceeecCCCCCccCCCCCCCCCCccEEEeccCccc----ccccccCcCC-CCccEEeecCCcCCc----ccCC-CCCCCCc
Q 023528 69 RIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNL----KALPNCIHNL-TSLLHLEIRECRSLV----SFPE-DGFPTNL 138 (281)
Q Consensus 69 ~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l----~~lp~~~~~l-~~L~~L~l~~~~~l~----~l~~-~~~~~~L 138 (281)
..+..+.. . ++|++|++++|... ..+...+..+ ++|+.+++++|.... .+.. ....++|
T Consensus 99 -------~~~~~l~~---~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L 167 (319)
T cd00116 99 -------GVLESLLR---S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDL 167 (319)
T ss_pred -------HHHHHHhc---c-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCc
Confidence 11112221 1 46999999887533 1223344556 888999998864331 1111 1344688
Q ss_pred CeEEecCCCCccccc---hhhhccCCCcceEEeecCCCCCccC-----CC---CCCCccEEeccCCCCCccc-----ccc
Q 023528 139 QSLVVDDLKISKPLF---EWGLDRFACLRELRIRGGCPDLVSS-----PR---FPASLTQLGISDMPTLKCL-----SSV 202 (281)
Q Consensus 139 ~~L~l~~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~-----~~---~~~~L~~L~l~~c~~l~~l-----~~~ 202 (281)
++|++.+|....... ...+...++|++|++++ |. ++.. .. ..++|++|++++| .++.. ...
T Consensus 168 ~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~-n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~ 244 (319)
T cd00116 168 KELNLANNGIGDAGIRALAEGLKANCNLEVLDLNN-NG-LTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALASA 244 (319)
T ss_pred CEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccC-Cc-cChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHH
Confidence 999998865432111 11244556899999987 53 3211 11 3457999999985 45431 101
Q ss_pred C-CCCCCcCEEeccCCCCccc-----ccC-CCCCCCCcEEecCCCchHHHHHhhcCCCCCccccccccc-ccccEEEECC
Q 023528 203 G-ENLTSLETLDLSNCPKLKY-----FSK-QGLPKSLLRLGIDDCPLMEKRWIKADYPYTFATRYWPMI-THIPCVIVNG 274 (281)
Q Consensus 203 ~-~~l~~L~~L~l~~c~~l~~-----i~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~ 274 (281)
. ...+.|++|++++|. +++ +.. ....+.|++++++++..-.+..... . ..+... .++..+++.+
T Consensus 245 ~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~-~------~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 245 LLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLL-A------ESLLEPGNELESLWVKD 316 (319)
T ss_pred HhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHH-H------HHHhhcCCchhhcccCC
Confidence 1 224788999998874 321 111 1113678899988877443321110 0 223434 4666666665
Q ss_pred E
Q 023528 275 R 275 (281)
Q Consensus 275 ~ 275 (281)
.
T Consensus 317 ~ 317 (319)
T cd00116 317 D 317 (319)
T ss_pred C
Confidence 4
No 27
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.47 E-value=1.9e-07 Score=89.66 Aligned_cols=172 Identities=24% Similarity=0.235 Sum_probs=101.4
Q ss_pred CcCceeeccCCcCcccccc-CCCcCCcCcEEEecCCcchhccccc---------eeecCCCCCccCCCCCCCCCCccEEE
Q 023528 26 ATLEHLEVTHCSNLAFLSW-NGNLPRALKYLYVKDCSKLESLAER---------IWIFGCPNLESFPEGGLPSTKLTRLT 95 (281)
Q Consensus 26 ~~L~~L~l~~~~~l~~l~~-~~~l~~~L~~L~l~~~~~l~~~p~~---------L~l~~~~~l~~l~~~~~~~~~L~~L~ 95 (281)
+.|++||+++|..+..+|. ++.+-+ ||+|+++++. ++.+|.+ |++.....+..++.....+++|++|.
T Consensus 571 ~~LrVLDLs~~~~l~~LP~~I~~Li~-LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~ 648 (889)
T KOG4658|consen 571 PLLRVLDLSGNSSLSKLPSSIGELVH-LRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLR 648 (889)
T ss_pred cceEEEECCCCCccCcCChHHhhhhh-hhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEE
Confidence 7999999999999999987 888999 9999999965 7777776 66666666666655555577888888
Q ss_pred eccCc-ccc-cccccCcCCCCccEEeecCCcC--------------------------CcccCCCCCCCCcCeEEecCCC
Q 023528 96 IWKCK-NLK-ALPNCIHNLTSLLHLEIRECRS--------------------------LVSFPEDGFPTNLQSLVVDDLK 147 (281)
Q Consensus 96 l~~c~-~l~-~lp~~~~~l~~L~~L~l~~~~~--------------------------l~~l~~~~~~~~L~~L~l~~~~ 147 (281)
+..-. ... ..-..+..+.+|+.+....++. .+.......+.+|+.|.+.+|.
T Consensus 649 l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~ 728 (889)
T KOG4658|consen 649 LPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCG 728 (889)
T ss_pred eeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCC
Confidence 76522 100 0112334555555555543222 0001111345666667766665
Q ss_pred Cccccc----hhhhcc-CCCcceEEeecCCCCCccCCC--CCCCccEEeccCCCCCcccc
Q 023528 148 ISKPLF----EWGLDR-FACLRELRIRGGCPDLVSSPR--FPASLTQLGISDMPTLKCLS 200 (281)
Q Consensus 148 ~~~~~~----~~~~~~-l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~ 200 (281)
..+... ...... ++++..+.+.. |....+... .+++|+.|.+..|..++.+.
T Consensus 729 ~~e~~~~~~~~~~~~~~f~~l~~~~~~~-~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 729 ISEIVIEWEESLIVLLCFPNLSKVSILN-CHMLRDLTWLLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred CchhhcccccccchhhhHHHHHHHHhhc-cccccccchhhccCcccEEEEecccccccCC
Confidence 532211 000111 33444444444 444444332 56678888888877666554
No 28
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.46 E-value=7.9e-09 Score=87.70 Aligned_cols=222 Identities=17% Similarity=0.166 Sum_probs=123.9
Q ss_pred CCCcccCCCCCccCcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccc----------eeecCCCCCcc
Q 023528 13 TSRTPFSSENELPATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAER----------IWIFGCPNLES 80 (281)
Q Consensus 13 ~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~----------L~l~~~~~l~~ 80 (281)
.+++++ | ..+|+....+.+..+. +..+|+ |+.+++ ||.|+|+.+. +..|..+ +.+-+..+++.
T Consensus 56 ~GL~eV-P-~~LP~~tveirLdqN~-I~~iP~~aF~~l~~-LRrLdLS~N~-Is~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 56 KGLTEV-P-ANLPPETVEIRLDQNQ-ISSIPPGAFKTLHR-LRRLDLSKNN-ISFIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred CCcccC-c-ccCCCcceEEEeccCC-cccCChhhccchhh-hceecccccc-hhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence 456777 5 3467788888888765 888887 888999 9999998864 5444221 33334445566
Q ss_pred CCCCC-CCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCcccc--c--
Q 023528 81 FPEGG-LPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPL--F-- 153 (281)
Q Consensus 81 l~~~~-~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~--~-- 153 (281)
+|... ..+..|+.|.+.-|.--......+..++++..|.+.. +.+..++.. ..+.+++++.+..+....+. +
T Consensus 131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wl 209 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWL 209 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCccccccccchh
Confidence 65432 2345556655555322121224455666666666655 344444443 22345555555544321110 0
Q ss_pred -------hhhhccCC-----CcceEEe-------------------ecCCCCCccCCC----CCCCccEEeccCCCCCcc
Q 023528 154 -------EWGLDRFA-----CLRELRI-------------------RGGCPDLVSSPR----FPASLTQLGISDMPTLKC 198 (281)
Q Consensus 154 -------~~~~~~l~-----~L~~L~l-------------------~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~ 198 (281)
...++.+. .+.+-.+ ...|.-...-|. ..++|++|++++ ++++.
T Consensus 210 a~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn-N~i~~ 288 (498)
T KOG4237|consen 210 ADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN-NKITR 288 (498)
T ss_pred hhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC-Cccch
Confidence 00011100 0000000 000100011111 356888999998 78888
Q ss_pred ccccC-CCCCCcCEEeccCCCCcccccCCCC--CCCCcEEecCCCch
Q 023528 199 LSSVG-ENLTSLETLDLSNCPKLKYFSKQGL--PKSLLRLGIDDCPL 242 (281)
Q Consensus 199 l~~~~-~~l~~L~~L~l~~c~~l~~i~~~~~--~~~L~~L~l~~c~~ 242 (281)
|...+ ..+.++++|.+.. +++..+....+ ++.|+.|++.+...
T Consensus 289 i~~~aFe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~N~i 334 (498)
T KOG4237|consen 289 IEDGAFEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYDNQI 334 (498)
T ss_pred hhhhhhcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecCCee
Confidence 87666 8888899999988 67777766443 57888888887653
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=9.2e-08 Score=82.27 Aligned_cols=153 Identities=19% Similarity=0.227 Sum_probs=99.7
Q ss_pred CCCCCccEEEeccCccccccc--ccCcCCCCccEEeecCCcCCcccCCC---CCCCCcCeEEecCCCCccccchhhhccC
Q 023528 86 LPSTKLTRLTIWKCKNLKALP--NCIHNLTSLLHLEIRECRSLVSFPED---GFPTNLQSLVVDDLKISKPLFEWGLDRF 160 (281)
Q Consensus 86 ~~~~~L~~L~l~~c~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~l~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~l 160 (281)
..|++++.|+++.+-.-.+.| .-...+++|+.|+++. +.+...... ..++.|+.|.++.|+.........+..+
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~-Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSS-NRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccc-ccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 347789999998843322222 2236789999999986 334333222 4678899999999887633333356778
Q ss_pred CCcceEEeecCCCCCc--cCCC-CCCCccEEeccCCCCCccccc--cCCCCCCcCEEeccCCCCcccccC--C------C
Q 023528 161 ACLRELRIRGGCPDLV--SSPR-FPASLTQLGISDMPTLKCLSS--VGENLTSLETLDLSNCPKLKYFSK--Q------G 227 (281)
Q Consensus 161 ~~L~~L~l~~~~~~~~--~~~~-~~~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~i~~--~------~ 227 (281)
|+|+.|.+.. +..+. ..+. .+..|+.|+|++ +.+-.++. ..+.++.|..|+++.| .+.++.. . .
T Consensus 222 Psl~~L~L~~-N~~~~~~~~~~~i~~~L~~LdLs~-N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~ 298 (505)
T KOG3207|consen 222 PSLEVLYLEA-NEIILIKATSTKILQTLQELDLSN-NNLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTH 298 (505)
T ss_pred CcHHHhhhhc-ccccceecchhhhhhHHhhccccC-Ccccccccccccccccchhhhhcccc-CcchhcCCCccchhhhc
Confidence 8999999987 43322 2222 667899999999 45555541 2278888888888874 4554432 1 2
Q ss_pred CCCCCcEEecCCCch
Q 023528 228 LPKSLLRLGIDDCPL 242 (281)
Q Consensus 228 ~~~~L~~L~l~~c~~ 242 (281)
.+++|++|++...+.
T Consensus 299 ~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 299 TFPKLEYLNISENNI 313 (505)
T ss_pred ccccceeeecccCcc
Confidence 367889998887664
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.39 E-value=2.9e-07 Score=71.51 Aligned_cols=124 Identities=17% Similarity=0.273 Sum_probs=38.5
Q ss_pred CcCceeeccCCcCccccccCC-CcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCccccc
Q 023528 26 ATLEHLEVTHCSNLAFLSWNG-NLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKA 104 (281)
Q Consensus 26 ~~L~~L~l~~~~~l~~l~~~~-~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~ 104 (281)
..+++|+++++. +..+..++ .+.+ |+.|++++|. ++. +..++ .+++|+.|++++ ..++.
T Consensus 19 ~~~~~L~L~~n~-I~~Ie~L~~~l~~-L~~L~Ls~N~-I~~------------l~~l~----~L~~L~~L~L~~-N~I~~ 78 (175)
T PF14580_consen 19 VKLRELNLRGNQ-ISTIENLGATLDK-LEVLDLSNNQ-ITK------------LEGLP----GLPRLKTLDLSN-NRISS 78 (175)
T ss_dssp ------------------S--TT-TT---EEE-TTS---S--------------TT--------TT--EEE--S-S---S
T ss_pred cccccccccccc-cccccchhhhhcC-CCEEECCCCC-Ccc------------ccCcc----ChhhhhhcccCC-CCCCc
Confidence 467777887765 55555555 4666 7777777754 221 11122 245777887777 35555
Q ss_pred ccccC-cCCCCccEEeecCCcCCcccCCC---CCCCCcCeEEecCCCCc--cccchhhhccCCCcceEEeec
Q 023528 105 LPNCI-HNLTSLLHLEIRECRSLVSFPED---GFPTNLQSLVVDDLKIS--KPLFEWGLDRFACLRELRIRG 170 (281)
Q Consensus 105 lp~~~-~~l~~L~~L~l~~~~~l~~l~~~---~~~~~L~~L~l~~~~~~--~~~~~~~~~~l~~L~~L~l~~ 170 (281)
++.++ ..+++|++|++++ +.+..+... ..+++|+.|++.+|+.. ...-...+..+|+|+.||-..
T Consensus 79 i~~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 79 ISEGLDKNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -CHHHHHH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred cccchHHhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 54444 3567777777776 344444322 34567777777765533 111222345666666666543
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.36 E-value=2e-08 Score=88.93 Aligned_cols=155 Identities=26% Similarity=0.345 Sum_probs=114.3
Q ss_pred CCccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC-CCCCCcCeEEecCCCCccccchh
Q 023528 77 NLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLKISKPLFEW 155 (281)
Q Consensus 77 ~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~ 155 (281)
.++.+|..++.+..|.+++++. ..++.+|.++..| -|+.|-+++ +.++.+|.. +....|..++.+.| .+..++.
T Consensus 109 ~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~l-pLkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~n-ei~slps- 183 (722)
T KOG0532|consen 109 CIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDL-PLKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPS- 183 (722)
T ss_pred cceecchhhhhhhHHHHhhhcc-chhhcCChhhhcC-cceeEEEec-CccccCCcccccchhHHHhhhhhh-hhhhchH-
Confidence 4567777777788888888888 5667777777665 467777776 577777765 56678888888774 4455554
Q ss_pred hhccCCCcceEEeecCCCCCccCCC--CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccC----CCCC
Q 023528 156 GLDRFACLRELRIRGGCPDLVSSPR--FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSK----QGLP 229 (281)
Q Consensus 156 ~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~----~~~~ 229 (281)
.+.++.+|+.|.+.. +.+..+|+ .--.|.+||++. |++..||..+.+++.|++|.+.+++ +..-|. .|..
T Consensus 184 ql~~l~slr~l~vrR--n~l~~lp~El~~LpLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkV 259 (722)
T KOG0532|consen 184 QLGYLTSLRDLNVRR--NHLEDLPEELCSLPLIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKV 259 (722)
T ss_pred HhhhHHHHHHHHHhh--hhhhhCCHHHhCCceeeeeccc-CceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccce
Confidence 577888899888887 66777776 222588999997 8999999777999999999998854 555443 3445
Q ss_pred CCCcEEecCCC
Q 023528 230 KSLLRLGIDDC 240 (281)
Q Consensus 230 ~~L~~L~l~~c 240 (281)
.-.++|++..|
T Consensus 260 HIFKyL~~qA~ 270 (722)
T KOG0532|consen 260 HIFKYLSTQAC 270 (722)
T ss_pred eeeeeecchhc
Confidence 56788888777
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.36 E-value=4.7e-07 Score=70.39 Aligned_cols=77 Identities=16% Similarity=0.173 Sum_probs=17.6
Q ss_pred CccEEEeccCcccccccccCc-CCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcceEEe
Q 023528 90 KLTRLTIWKCKNLKALPNCIH-NLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRI 168 (281)
Q Consensus 90 ~L~~L~l~~c~~l~~lp~~~~-~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 168 (281)
++++|++.|+ .+..+ +.++ .+.+|+.|++++ ..++.+.....++.|++|++++ +.++.+.......+++|++|++
T Consensus 20 ~~~~L~L~~n-~I~~I-e~L~~~l~~L~~L~Ls~-N~I~~l~~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGN-QISTI-ENLGATLDKLEVLDLSN-NQITKLEGLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp ------------------S--TT-TT--EEE-TT-S--S--TT----TT--EEE--S-S---S-CHHHHHH-TT--EEE-
T ss_pred cccccccccc-ccccc-cchhhhhcCCCEEECCC-CCCccccCccChhhhhhcccCC-CCCCccccchHHhCCcCCEEEC
Confidence 4566666663 34433 2443 355666666665 3555555444556666666665 3333332211234566666666
Q ss_pred ec
Q 023528 169 RG 170 (281)
Q Consensus 169 ~~ 170 (281)
++
T Consensus 96 ~~ 97 (175)
T PF14580_consen 96 SN 97 (175)
T ss_dssp TT
T ss_pred cC
Confidence 55
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=1.1e-07 Score=81.86 Aligned_cols=192 Identities=15% Similarity=0.124 Sum_probs=113.6
Q ss_pred ccceeecccCCCCCcccCCC---CCccCcCceeeccCCcCcccc-cc---CCCcCCcCcEEEecCCcchhccccceeecC
Q 023528 2 KQDISRSSSGSTSRTPFSSE---NELPATLEHLEVTHCSNLAFL-SW---NGNLPRALKYLYVKDCSKLESLAERIWIFG 74 (281)
Q Consensus 2 ~~l~~l~~~~~~~l~~~~~~---~~~~~~L~~L~l~~~~~l~~l-~~---~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~ 74 (281)
|+|+...+.++. +... +. ....++++.|+++.+- +..+ +. ..++|+ |+.|+++.+...-. .
T Consensus 121 kkL~~IsLdn~~-V~~~-~~~~~~k~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~-Le~LNls~Nrl~~~--------~ 188 (505)
T KOG3207|consen 121 KKLREISLDNYR-VEDA-GIEEYSKILPNVRDLDLSRNL-FHNWFPVLKIAEQLPS-LENLNLSSNRLSNF--------I 188 (505)
T ss_pred HhhhheeecCcc-cccc-chhhhhhhCCcceeecchhhh-HHhHHHHHHHHHhccc-chhcccccccccCC--------c
Confidence 567777777644 4433 21 1222588888888765 3322 22 566888 88888887541111 0
Q ss_pred CCCCccCCCCCCCCCCccEEEeccCcccccc--cccCcCCCCccEEeecCCcCCc-ccCCCCCCCCcCeEEecCCCCccc
Q 023528 75 CPNLESFPEGGLPSTKLTRLTIWKCKNLKAL--PNCIHNLTSLLHLEIRECRSLV-SFPEDGFPTNLQSLVVDDLKISKP 151 (281)
Q Consensus 75 ~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l--p~~~~~l~~L~~L~l~~~~~l~-~l~~~~~~~~L~~L~l~~~~~~~~ 151 (281)
-...+ ..+++|+.|.+++|-. ++- -.-+..+++|+.|++.+...+. .......+..|+.|++++++.++.
T Consensus 189 ~s~~~------~~l~~lK~L~l~~CGl-s~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~ 261 (505)
T KOG3207|consen 189 SSNTT------LLLSHLKQLVLNSCGL-SWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDF 261 (505)
T ss_pred cccch------hhhhhhheEEeccCCC-CHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccc
Confidence 01111 1356889999998743 221 1123467888888888753222 112224567889999998776644
Q ss_pred cchhhhccCCCcceEEeecCCCCCccC--CC--------CCCCccEEeccCCCCCccccccC---CCCCCcCEEeccC
Q 023528 152 LFEWGLDRFACLRELRIRGGCPDLVSS--PR--------FPASLTQLGISDMPTLKCLSSVG---ENLTSLETLDLSN 216 (281)
Q Consensus 152 ~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~--------~~~~L~~L~l~~c~~l~~l~~~~---~~l~~L~~L~l~~ 216 (281)
....-...++.|..|+++. | .+.++ |. .+++|+.|++.. +.+.+++ +. ..+++|+.+.+..
T Consensus 262 ~~~~~~~~l~~L~~Lnls~-t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~-sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 262 DQGYKVGTLPGLNQLNLSS-T-GIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWR-SLNHLRTLENLKHLRITL 335 (505)
T ss_pred ccccccccccchhhhhccc-c-CcchhcCCCccchhhhcccccceeeeccc-Ccccccc-ccchhhccchhhhhhccc
Confidence 3222467788888888887 3 33332 21 466899999998 5666555 22 4445666666554
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.20 E-value=1.6e-06 Score=76.90 Aligned_cols=130 Identities=25% Similarity=0.350 Sum_probs=68.2
Q ss_pred cCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC-CCCCCcCeEEecCCCCccccchhhhc
Q 023528 80 SFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLKISKPLFEWGLD 158 (281)
Q Consensus 80 ~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~ 158 (281)
.++.....+++|+.|++++| .+..+|.....++.|+.|++++ ..+..+|.. ..+..|+++.+.++....... .+.
T Consensus 154 ~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~--~~~ 229 (394)
T COG4886 154 SLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSNNSIIELLS--SLS 229 (394)
T ss_pred hhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhheeccC-CccccCchhhhhhhhhhhhhhcCCcceecch--hhh
Confidence 33333344556666666663 4455554444556666666665 455555544 345556666666543332222 244
Q ss_pred cCCCcceEEeecCCCCCccCCC---CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCC
Q 023528 159 RFACLRELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNC 217 (281)
Q Consensus 159 ~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c 217 (281)
.+.++..+.+.. +.+..++. .+.+++.|++++ +.+..++. .+.+.+++++++++.
T Consensus 230 ~~~~l~~l~l~~--n~~~~~~~~~~~l~~l~~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 230 NLKNLSGLELSN--NKLEDLPESIGNLSNLETLDLSN-NQISSISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred hcccccccccCC--ceeeeccchhccccccceecccc-cccccccc-ccccCccCEEeccCc
Confidence 555555555443 33333222 444566677666 56666652 455666666776663
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.19 E-value=3e-06 Score=75.15 Aligned_cols=158 Identities=24% Similarity=0.278 Sum_probs=114.2
Q ss_pred CCccCCCCCCCCC-CccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCCC-CCCCcCeEEecCCCCccccch
Q 023528 77 NLESFPEGGLPST-KLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDG-FPTNLQSLVVDDLKISKPLFE 154 (281)
Q Consensus 77 ~l~~l~~~~~~~~-~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~~~~~~ 154 (281)
.+..++......+ +|+.|++++ ..+..+|..+..++.|+.|++++ +.+..++... .+++|+.+++++ +.+..++.
T Consensus 127 ~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L~~L~ls~-N~i~~l~~ 203 (394)
T COG4886 127 NITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNLNNLDLSG-NKISDLPP 203 (394)
T ss_pred ccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhhhheeccC-CccccCch
Confidence 4556666666664 899999999 56777777888999999999998 4677777664 889999999998 56666664
Q ss_pred hhhccCCCcceEEeecCCCCCccCCC--CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCCCCCCCC
Q 023528 155 WGLDRFACLRELRIRGGCPDLVSSPR--FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKSL 232 (281)
Q Consensus 155 ~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~L 232 (281)
.......|+++.++. ...+..... ...++..+.+.+ +.+..++...+.++++++|++++ +.+..++..+-..++
T Consensus 204 -~~~~~~~L~~l~~~~-N~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~l~~l~~L~~s~-n~i~~i~~~~~~~~l 279 (394)
T COG4886 204 -EIELLSALEELDLSN-NSIIELLSSLSNLKNLSGLELSN-NKLEDLPESIGNLSNLETLDLSN-NQISSISSLGSLTNL 279 (394)
T ss_pred -hhhhhhhhhhhhhcC-CcceecchhhhhcccccccccCC-ceeeeccchhccccccceecccc-ccccccccccccCcc
Confidence 223555699999998 322332222 445666777666 56666553448888899999998 578888774446789
Q ss_pred cEEecCCCc
Q 023528 233 LRLGIDDCP 241 (281)
Q Consensus 233 ~~L~l~~c~ 241 (281)
+.|++++..
T Consensus 280 ~~L~~s~n~ 288 (394)
T COG4886 280 RELDLSGNS 288 (394)
T ss_pred CEEeccCcc
Confidence 999988743
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.10 E-value=6.4e-07 Score=73.93 Aligned_cols=182 Identities=16% Similarity=0.127 Sum_probs=89.6
Q ss_pred CcCceeeccCCcCcccccc-CCCcCCcCcEEEecCCcchhcc----ccc--eeecCCC---CCccCCCCCCCCCCccEEE
Q 023528 26 ATLEHLEVTHCSNLAFLSW-NGNLPRALKYLYVKDCSKLESL----AER--IWIFGCP---NLESFPEGGLPSTKLTRLT 95 (281)
Q Consensus 26 ~~L~~L~l~~~~~l~~l~~-~~~l~~~L~~L~l~~~~~l~~~----p~~--L~l~~~~---~l~~l~~~~~~~~~L~~L~ 95 (281)
.+|+.+.++.|. -+.+-. ...-|. |..+..+... +... |.. .+..+-. .-...-..+-.+..|+.++
T Consensus 214 ~~l~~~~~s~~~-~~~i~~~~~~kpt-l~t~~v~~s~-~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelD 290 (490)
T KOG1259|consen 214 RNLKTLKFSALS-TENIVDIELLKPT-LQTICVHNTT-IQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELD 290 (490)
T ss_pred hhhheeeeeccc-hhheeceeecCch-hheeeeeccc-ccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhcc
Confidence 688888888887 333332 233455 8877766532 1111 110 0000000 0000000111134566666
Q ss_pred eccCcccccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCC
Q 023528 96 IWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDL 175 (281)
Q Consensus 96 l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 175 (281)
+++ +.+..+.+++.-.+.++.|++++ +++..+.....+++|+.|++++ +.+..+.. +-.++-++++|.+++ +.+
T Consensus 291 LS~-N~I~~iDESvKL~Pkir~L~lS~-N~i~~v~nLa~L~~L~~LDLS~-N~Ls~~~G-wh~KLGNIKtL~La~--N~i 364 (490)
T KOG1259|consen 291 LSG-NLITQIDESVKLAPKLRRLILSQ-NRIRTVQNLAELPQLQLLDLSG-NLLAECVG-WHLKLGNIKTLKLAQ--NKI 364 (490)
T ss_pred ccc-cchhhhhhhhhhccceeEEeccc-cceeeehhhhhcccceEeeccc-chhHhhhh-hHhhhcCEeeeehhh--hhH
Confidence 666 34555555666666666666666 3455554445566666666666 33333321 233455666666665 444
Q ss_pred ccCCC--CCCCccEEeccCCCCCccccc--cCCCCCCcCEEeccCC
Q 023528 176 VSSPR--FPASLTQLGISDMPTLKCLSS--VGENLTSLETLDLSNC 217 (281)
Q Consensus 176 ~~~~~--~~~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~l~~c 217 (281)
.++.. -.-+|..||+++ ++++.+.. .++.++.|+++.+.++
T Consensus 365 E~LSGL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 365 ETLSGLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred hhhhhhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCC
Confidence 44433 223566666666 44444321 1256666666666653
No 37
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=2.2e-07 Score=76.50 Aligned_cols=130 Identities=17% Similarity=0.139 Sum_probs=80.6
Q ss_pred CCCccEEEeccCcccccccc--cCcCCCCccEEeecCCcCCcccC-C--CCCCCCcCeEEecCCCCc--cccchhhhccC
Q 023528 88 STKLTRLTIWKCKNLKALPN--CIHNLTSLLHLEIRECRSLVSFP-E--DGFPTNLQSLVVDDLKIS--KPLFEWGLDRF 160 (281)
Q Consensus 88 ~~~L~~L~l~~c~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~l~-~--~~~~~~L~~L~l~~~~~~--~~~~~~~~~~l 160 (281)
=.+|+.|++++|..+++... -+.+++.|..|++++|-..+..- . ..--++|+.|+++|+... ..-......++
T Consensus 233 N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rc 312 (419)
T KOG2120|consen 233 NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRC 312 (419)
T ss_pred cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhC
Confidence 45788888888887765432 24678888888888874443321 1 123467788888887543 11112234678
Q ss_pred CCcceEEeecCCCCCccCC--C--CCCCccEEeccCCCCCcccc-ccCCCCCCcCEEeccCCC
Q 023528 161 ACLRELRIRGGCPDLVSSP--R--FPASLTQLGISDMPTLKCLS-SVGENLTSLETLDLSNCP 218 (281)
Q Consensus 161 ~~L~~L~l~~~~~~~~~~~--~--~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~ 218 (281)
++|.+||+++ |..++.-- + -++.|++|+++.|..+..-- ......++|.+|++.||.
T Consensus 313 p~l~~LDLSD-~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 313 PNLVHLDLSD-SVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred Cceeeecccc-ccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 8888888888 76655410 1 45578888888886543210 022566778888887763
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.02 E-value=1.1e-05 Score=51.41 Aligned_cols=31 Identities=45% Similarity=0.588 Sum_probs=12.7
Q ss_pred ccEEeccCCCCCccccccC-CCCCCcCEEeccC
Q 023528 185 LTQLGISDMPTLKCLSSVG-ENLTSLETLDLSN 216 (281)
Q Consensus 185 L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~ 216 (281)
|++|++++ +.++.+|..+ ..+++|++|++++
T Consensus 3 L~~L~l~~-n~l~~i~~~~f~~l~~L~~L~l~~ 34 (61)
T PF13855_consen 3 LESLDLSN-NKLTEIPPDSFSNLPNLETLDLSN 34 (61)
T ss_dssp ESEEEETS-STESEECTTTTTTGTTESEEEETS
T ss_pred CcEEECCC-CCCCccCHHHHcCCCCCCEeEccC
Confidence 34444444 2344444333 4444444444443
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.00 E-value=6e-07 Score=74.11 Aligned_cols=55 Identities=18% Similarity=0.215 Sum_probs=23.9
Q ss_pred ccceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecC
Q 023528 2 KQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKD 59 (281)
Q Consensus 2 ~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~ 59 (281)
+.+.++.+++ ..++.+..+..+.|.++.|+++.+. +..+..+..+++ |..|++++
T Consensus 284 q~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~nLa~L~~-L~~LDLS~ 338 (490)
T KOG1259|consen 284 QELTELDLSG-NLITQIDESVKLAPKLRRLILSQNR-IRTVQNLAELPQ-LQLLDLSG 338 (490)
T ss_pred hhhhhccccc-cchhhhhhhhhhccceeEEeccccc-eeeehhhhhccc-ceEeeccc
Confidence 3344444444 2244442222233455555555443 333334444555 55555544
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.98 E-value=1.8e-07 Score=83.01 Aligned_cols=156 Identities=23% Similarity=0.373 Sum_probs=93.5
Q ss_pred CCccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhh
Q 023528 77 NLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWG 156 (281)
Q Consensus 77 ~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~ 156 (281)
++..+|..++.+-.|+.+.+.. ..+..+|..+.++..|.+++++. +.+..+|.....--|+.+.+++ +.++.+|. .
T Consensus 86 R~~elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lpLkvli~sN-Nkl~~lp~-~ 161 (722)
T KOG0532|consen 86 RFSELPEEACAFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLPLKVLIVSN-NKLTSLPE-E 161 (722)
T ss_pred ccccCchHHHHHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCcceeEEEec-CccccCCc-c
Confidence 4455566555555666666655 34555666777777777777765 4555555543333456666655 55555554 3
Q ss_pred hccCCCcceEEeecCCCCCccCCC---CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCC-CCCCCC
Q 023528 157 LDRFACLRELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQ-GLPKSL 232 (281)
Q Consensus 157 ~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~-~~~~~L 232 (281)
++..+.|..|+++. +++.++|. ...+|+.|.+.. +++..+|.+...+ .|..||++. +++..+|.. .....|
T Consensus 162 ig~~~tl~~ld~s~--nei~slpsql~~l~slr~l~vrR-n~l~~lp~El~~L-pLi~lDfSc-Nkis~iPv~fr~m~~L 236 (722)
T KOG0532|consen 162 IGLLPTLAHLDVSK--NEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEELCSL-PLIRLDFSC-NKISYLPVDFRKMRHL 236 (722)
T ss_pred cccchhHHHhhhhh--hhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHHHhCC-ceeeeeccc-Cceeecchhhhhhhhh
Confidence 45666677777775 45555554 455666777776 5666666444432 456677764 677777762 225667
Q ss_pred cEEecCCCc
Q 023528 233 LRLGIDDCP 241 (281)
Q Consensus 233 ~~L~l~~c~ 241 (281)
++|.+++.|
T Consensus 237 q~l~LenNP 245 (722)
T KOG0532|consen 237 QVLQLENNP 245 (722)
T ss_pred eeeeeccCC
Confidence 777777766
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.97 E-value=1.3e-05 Score=51.05 Aligned_cols=55 Identities=29% Similarity=0.377 Sum_probs=46.2
Q ss_pred CCcceEEeecCCCCCccCCC----CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCC
Q 023528 161 ACLRELRIRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCP 218 (281)
Q Consensus 161 ~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~ 218 (281)
++|++|++++ +.+..++. ..++|++|++++ +.++.++... .++++|++|++++|.
T Consensus 1 p~L~~L~l~~--n~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSN--NKLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETS--STESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCC--CCCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCc
Confidence 5789999998 47777775 567999999998 6889998666 999999999999863
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=4.5e-07 Score=74.71 Aligned_cols=131 Identities=18% Similarity=0.164 Sum_probs=66.5
Q ss_pred CCCCccEEeecCCcCCcccCCC---CCCCCcCeEEecCCCCccccchhhhcc-CCCcceEEeecCCCCCccCCC------
Q 023528 111 NLTSLLHLEIRECRSLVSFPED---GFPTNLQSLVVDDLKISKPLFEWGLDR-FACLRELRIRGGCPDLVSSPR------ 180 (281)
Q Consensus 111 ~l~~L~~L~l~~~~~l~~l~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~------ 180 (281)
.-..|+.++++.|++++..... ..++.|..|++++|...++.......+ -++|..|++++ |...-....
T Consensus 232 kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG-~rrnl~~sh~~tL~~ 310 (419)
T KOG2120|consen 232 KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSG-YRRNLQKSHLSTLVR 310 (419)
T ss_pred ccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhh-hHhhhhhhHHHHHHH
Confidence 3445555555555544433221 234455555555554443221111111 23455555555 322110001
Q ss_pred CCCCccEEeccCCCCCccc-cccCCCCCCcCEEeccCCCCccc--ccCCCCCCCCcEEecCCCch
Q 023528 181 FPASLTQLGISDMPTLKCL-SSVGENLTSLETLDLSNCPKLKY--FSKQGLPKSLLRLGIDDCPL 242 (281)
Q Consensus 181 ~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~--i~~~~~~~~L~~L~l~~c~~ 242 (281)
-.+++.+||+++|..++.- ...+-.++.|++|.++.|=.+.. +-..+-.++|.+|++.+|-.
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 3557888888888766541 10125777888888888854321 10112257899999988863
No 43
>PLN03150 hypothetical protein; Provisional
Probab=97.73 E-value=9.7e-05 Score=69.35 Aligned_cols=108 Identities=19% Similarity=0.155 Sum_probs=81.9
Q ss_pred CccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC-CCCCCcCeEEecCCCCccccchhhhccCCCcceEEe
Q 023528 90 KLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRI 168 (281)
Q Consensus 90 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 168 (281)
.++.|+++++..-..+|..+..+++|+.|+++++.....+|.. +.+++|+.|++++|.....+|. .+.++++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~-~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE-SLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch-HHhcCCCCCEEEC
Confidence 4788999997666678888999999999999986555567753 7789999999999766566664 6889999999999
Q ss_pred ecCCCCCccCCC----CCCCccEEeccCCCCCccc
Q 023528 169 RGGCPDLVSSPR----FPASLTQLGISDMPTLKCL 199 (281)
Q Consensus 169 ~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l 199 (281)
++ +.-...+|. ...++..+++.++..+-..
T Consensus 498 s~-N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 498 NG-NSLSGRVPAALGGRLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred cC-CcccccCChHHhhccccCceEEecCCccccCC
Confidence 98 655556665 2345667777775444333
No 44
>PLN03150 hypothetical protein; Provisional
Probab=97.66 E-value=0.00017 Score=67.77 Aligned_cols=110 Identities=15% Similarity=0.058 Sum_probs=80.4
Q ss_pred CccEEeecCCcCCcccCCC-CCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC---CCCCccEEe
Q 023528 114 SLLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR---FPASLTQLG 189 (281)
Q Consensus 114 ~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~ 189 (281)
.++.|++.++.....+|.. ..+++|+.|++++|.....+|. .+..+++|+.|++++ +.-...+|. ..++|+.|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~-~~~~l~~L~~LdLs~-N~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP-SLGSITSLEVLDLSY-NSFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCCh-HHhCCCCCCEEECCC-CCCCCCCchHHhcCCCCCEEE
Confidence 4678888876544455544 6778999999999765566764 588999999999998 555556676 567899999
Q ss_pred ccCCCCCccccccC-CCCCCcCEEeccCCCCcccccC
Q 023528 190 ISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSK 225 (281)
Q Consensus 190 l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~ 225 (281)
+++++--+.+|... ....++..+++.++..+...|.
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 99965556888555 3345677888888766665543
No 45
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.37 E-value=5.6e-05 Score=71.18 Aligned_cols=122 Identities=25% Similarity=0.181 Sum_probs=58.5
Q ss_pred CccEEEeccCccc-ccccccC-cCCCCccEEeecCCcCCcc-cC-CCCCCCCcCeEEecCCCCccccchhhhccCCCcce
Q 023528 90 KLTRLTIWKCKNL-KALPNCI-HNLTSLLHLEIRECRSLVS-FP-EDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRE 165 (281)
Q Consensus 90 ~L~~L~l~~c~~l-~~lp~~~-~~l~~L~~L~l~~~~~l~~-l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 165 (281)
+|++|+++|-..+ ..+|..+ ..+|+|+.|.+.+...... +. .....|+|..|+|++ ..++.+. +++++++|+.
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~-TnI~nl~--GIS~LknLq~ 199 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG-TNISNLS--GISRLKNLQV 199 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCC-CCccCcH--HHhccccHHH
Confidence 5666666663322 1122222 2566666666665222111 11 013456666666666 3334442 5666666666
Q ss_pred EEeecCCCCCccCCC-----CCCCccEEeccCCCCCc--cccc---cC-CCCCCcCEEeccC
Q 023528 166 LRIRGGCPDLVSSPR-----FPASLTQLGISDMPTLK--CLSS---VG-ENLTSLETLDLSN 216 (281)
Q Consensus 166 L~l~~~~~~~~~~~~-----~~~~L~~L~l~~c~~l~--~l~~---~~-~~l~~L~~L~l~~ 216 (281)
|.+.+ -++..... ..++|+.||++.-.... .+.. +. ..+|.|+.||.++
T Consensus 200 L~mrn--Le~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 200 LSMRN--LEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred HhccC--CCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 66654 22222221 45566666666522111 0110 11 4566777777775
No 46
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.32 E-value=9.4e-05 Score=62.42 Aligned_cols=233 Identities=15% Similarity=0.149 Sum_probs=133.6
Q ss_pred CcCceeeccCCcCcc----cc-ccCCCcCCcCcEEEecCCc--ch-hccccceeecCCCCCccCCCCCCCCCCccEEEec
Q 023528 26 ATLEHLEVTHCSNLA----FL-SWNGNLPRALKYLYVKDCS--KL-ESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIW 97 (281)
Q Consensus 26 ~~L~~L~l~~~~~l~----~l-~~~~~l~~~L~~L~l~~~~--~l-~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 97 (281)
.+++.++++++..-. .+ +.+.+.++ |++.++++.- .+ .++|. .+..+......+|+|++++++
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~-L~~v~~sd~ftGR~~~Ei~e--------~L~~l~~aL~~~~~L~~ldLS 100 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKE-LREVNLSDMFTGRLKDEIPE--------ALKMLSKALLGCPKLQKLDLS 100 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhccc-ceeeehHhhhcCCcHHHHHH--------HHHHHHHHHhcCCceeEeecc
Confidence 578888999876222 11 22666777 8888887632 00 11121 112222233446799999999
Q ss_pred cCcccccccc----cCcCCCCccEEeecCCcCCccc---------------CCCCCCCCcCeEEecCCCCccccc----h
Q 023528 98 KCKNLKALPN----CIHNLTSLLHLEIRECRSLVSF---------------PEDGFPTNLQSLVVDDLKISKPLF----E 154 (281)
Q Consensus 98 ~c~~l~~lp~----~~~~l~~L~~L~l~~~~~l~~l---------------~~~~~~~~L~~L~l~~~~~~~~~~----~ 154 (281)
++..=..-+. -+.++..|++|.+.+| ++... ......+.|+.+.... +.+.+.+ .
T Consensus 101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r-Nrlen~ga~~~A 178 (382)
T KOG1909|consen 101 DNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR-NRLENGGATALA 178 (382)
T ss_pred ccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec-cccccccHHHHH
Confidence 9654222222 2357889999999987 33221 1124568889888877 4443322 2
Q ss_pred hhhccCCCcceEEeecCCCCCcc--CCC------CCCCccEEeccCCCCCcc-----ccccCCCCCCcCEEeccCCCCcc
Q 023528 155 WGLDRFACLRELRIRGGCPDLVS--SPR------FPASLTQLGISDMPTLKC-----LSSVGENLTSLETLDLSNCPKLK 221 (281)
Q Consensus 155 ~~~~~l~~L~~L~l~~~~~~~~~--~~~------~~~~L~~L~l~~c~~l~~-----l~~~~~~l~~L~~L~l~~c~~l~ 221 (281)
..++..+.|+.+.+.+ +.+.. +.. ..++|+.|++.+ |-++. +......+++|++|++.+|. ++
T Consensus 179 ~~~~~~~~leevr~~q--N~I~~eG~~al~eal~~~~~LevLdl~D-Ntft~egs~~LakaL~s~~~L~El~l~dcl-l~ 254 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQ--NGIRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEGSVALAKALSSWPHLRELNLGDCL-LE 254 (382)
T ss_pred HHHHhccccceEEEec--ccccCchhHHHHHHHHhCCcceeeeccc-chhhhHHHHHHHHHhcccchheeecccccc-cc
Confidence 3456667888888887 33321 111 467899999988 44432 11111566788999999884 22
Q ss_pred cccC-------CCCCCCCcEEecCCCchHHHHHhhcCCCCCcccccccccccccEEEECCEEeeec
Q 023528 222 YFSK-------QGLPKSLLRLGIDDCPLMEKRWIKADYPYTFATRYWPMITHIPCVIVNGRFVFEE 280 (281)
Q Consensus 222 ~i~~-------~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 280 (281)
.-.. ....++|+.|.+.+|..-.+..... +......+++..+.++|++..|.
T Consensus 255 ~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~l-------a~~~~ek~dL~kLnLngN~l~e~ 313 (382)
T KOG1909|consen 255 NEGAIAFVDALKESAPSLEVLELAGNEITRDAALAL-------AACMAEKPDLEKLNLNGNRLGEK 313 (382)
T ss_pred cccHHHHHHHHhccCCCCceeccCcchhHHHHHHHH-------HHHHhcchhhHHhcCCccccccc
Confidence 2111 1125788888888887543321110 01123366777777888776443
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.24 E-value=0.00043 Score=40.69 Aligned_cols=41 Identities=34% Similarity=0.410 Sum_probs=31.7
Q ss_pred CCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccC
Q 023528 183 ASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSK 225 (281)
Q Consensus 183 ~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~ 225 (281)
++|++|++++ +.++.+|..++.+++|++|++++| .+++++.
T Consensus 1 ~~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETS-SS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccC-CCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 3788999998 689999855789999999999996 6776654
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.23 E-value=6.4e-06 Score=75.54 Aligned_cols=102 Identities=28% Similarity=0.247 Sum_probs=68.7
Q ss_pred CCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC---CCCCccEEeccCCCCCccccccCCCCCCcC
Q 023528 134 FPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLKCLSSVGENLTSLE 210 (281)
Q Consensus 134 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~ 210 (281)
+++.+++|+++.| .++... .+..++.|++||+++ +.+..+|. .-..|+.|.+.+ |.++.+- ...++.+|+
T Consensus 185 ll~ale~LnLshN-k~~~v~--~Lr~l~~LkhLDlsy--N~L~~vp~l~~~gc~L~~L~lrn-N~l~tL~-gie~LksL~ 257 (1096)
T KOG1859|consen 185 LLPALESLNLSHN-KFTKVD--NLRRLPKLKHLDLSY--NCLRHVPQLSMVGCKLQLLNLRN-NALTTLR-GIENLKSLY 257 (1096)
T ss_pred HHHHhhhhccchh-hhhhhH--HHHhccccccccccc--chhccccccchhhhhheeeeecc-cHHHhhh-hHHhhhhhh
Confidence 4567888888874 444443 477888888888887 56666665 223488888888 6777765 447888888
Q ss_pred EEeccCCCCcccccCC---CCCCCCcEEecCCCchH
Q 023528 211 TLDLSNCPKLKYFSKQ---GLPKSLLRLGIDDCPLM 243 (281)
Q Consensus 211 ~L~l~~c~~l~~i~~~---~~~~~L~~L~l~~c~~l 243 (281)
.||+++ +-+.+.... ..+.+|++|++.++|.-
T Consensus 258 ~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 258 GLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 888888 344444331 12457788888887743
No 49
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.23 E-value=0.00041 Score=65.50 Aligned_cols=128 Identities=20% Similarity=0.219 Sum_probs=82.6
Q ss_pred CCCCccEEeecCCcCC-cccCC--CCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC--CCCCc
Q 023528 111 NLTSLLHLEIRECRSL-VSFPE--DGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR--FPASL 185 (281)
Q Consensus 111 ~l~~L~~L~l~~~~~l-~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~L 185 (281)
.-..|++|+++|-..+ ..++. +..+|+|++|.+.+-....+.......++++|..||+++ .++..+.. ..++|
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~--TnI~nl~GIS~LknL 197 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG--TNISNLSGISRLKNL 197 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCC--CCccCcHHHhccccH
Confidence 3468899999873322 12221 246899999999984443333334567999999999999 45555533 45677
Q ss_pred cEEeccCCCCCccccc--cCCCCCCcCEEeccCCCCcccc-------cCCCCCCCCcEEecCCCc
Q 023528 186 TQLGISDMPTLKCLSS--VGENLTSLETLDLSNCPKLKYF-------SKQGLPKSLLRLGIDDCP 241 (281)
Q Consensus 186 ~~L~l~~c~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~i-------~~~~~~~~L~~L~l~~c~ 241 (281)
+.|.+.+. .++.-.. ...++++|+.||++.-.+...- .....+|.||.||.++..
T Consensus 198 q~L~mrnL-e~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 198 QVLSMRNL-EFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HHHhccCC-CCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 77777664 2332210 1168999999999985443321 112347899999999754
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.22 E-value=0.00047 Score=40.51 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=25.7
Q ss_pred CcCceeeccCCcCcccccc-CCCcCCcCcEEEecCCc
Q 023528 26 ATLEHLEVTHCSNLAFLSW-NGNLPRALKYLYVKDCS 61 (281)
Q Consensus 26 ~~L~~L~l~~~~~l~~l~~-~~~l~~~L~~L~l~~~~ 61 (281)
++|++|+++++. +..+|. ++.+++ |++|+++++.
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~-L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPN-LETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTT-SSEEEETSSC
T ss_pred CcceEEEccCCC-CcccCchHhCCCC-CCEEEecCCC
Confidence 478888888776 777877 888888 8888888874
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.04 E-value=6.8e-06 Score=75.37 Aligned_cols=124 Identities=23% Similarity=0.206 Sum_probs=79.6
Q ss_pred ccceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccC
Q 023528 2 KQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESF 81 (281)
Q Consensus 2 ~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l 81 (281)
.+|.+.+.+ |..+..+..+..+.+.|+.|+++++. +..+..+..+++ |++|+|+.+. +..+ ..+
T Consensus 164 n~L~~a~fs-yN~L~~mD~SLqll~ale~LnLshNk-~~~v~~Lr~l~~-LkhLDlsyN~-L~~v------------p~l 227 (1096)
T KOG1859|consen 164 NKLATASFS-YNRLVLMDESLQLLPALESLNLSHNK-FTKVDNLRRLPK-LKHLDLSYNC-LRHV------------PQL 227 (1096)
T ss_pred hhHhhhhcc-hhhHHhHHHHHHHHHHhhhhccchhh-hhhhHHHHhccc-ccccccccch-hccc------------ccc
Confidence 445555555 34455553333455789999999876 666667778889 9999997742 2222 222
Q ss_pred CCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCC---CCCCCCcCeEEecCCC
Q 023528 82 PEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPE---DGFPTNLQSLVVDDLK 147 (281)
Q Consensus 82 ~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~---~~~~~~L~~L~l~~~~ 147 (281)
...++ +|+.|.++++ .++.+ -++.++++|+.|++++ +.+..... ...+..|+.|++.||+
T Consensus 228 ~~~gc---~L~~L~lrnN-~l~tL-~gie~LksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 228 SMVGC---KLQLLNLRNN-ALTTL-RGIENLKSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred chhhh---hheeeeeccc-HHHhh-hhHHhhhhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 23333 5899999984 55655 4788999999999987 23332222 2345677788888755
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.96 E-value=0.00023 Score=63.60 Aligned_cols=31 Identities=35% Similarity=0.353 Sum_probs=15.1
Q ss_pred ccEEeccCCCCCccccccCCCCCCcCEEeccC
Q 023528 185 LTQLGISDMPTLKCLSSVGENLTSLETLDLSN 216 (281)
Q Consensus 185 L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 216 (281)
|+.+.+.+ +.+..++..+..+..+..+++..
T Consensus 234 L~~l~l~~-n~i~~~~~~~~~~~~l~~l~~~~ 264 (414)
T KOG0531|consen 234 LRELYLSG-NRISRSPEGLENLKNLPVLDLSS 264 (414)
T ss_pred HHHHhccc-Cccccccccccccccccccchhh
Confidence 55555555 44444431224445555555554
No 53
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.85 E-value=7.2e-05 Score=67.81 Aligned_cols=151 Identities=22% Similarity=0.257 Sum_probs=77.6
Q ss_pred CCCccEEEeccCcccccc--cccCcCCCCccEEeecCCcCCccc--CC-CCCCCCcCeEEecCCC---Cccccc------
Q 023528 88 STKLTRLTIWKCKNLKAL--PNCIHNLTSLLHLEIRECRSLVSF--PE-DGFPTNLQSLVVDDLK---ISKPLF------ 153 (281)
Q Consensus 88 ~~~L~~L~l~~c~~l~~l--p~~~~~l~~L~~L~l~~~~~l~~l--~~-~~~~~~L~~L~l~~~~---~~~~~~------ 153 (281)
+++|+.|.+.+|..++.- -.....++.|++|++++|..++.- .. ...+++++.+.+..+. .++...
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~ 347 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLT 347 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhc
Confidence 678999988888764321 122356788999999988765321 11 1234555554443332 232221
Q ss_pred -------hhhhccCCCcceEEeecCCCCCccCCCCCCCccEEeccCCCCC-ccccccCCCCCCcCEEeccCCCCcccccC
Q 023528 154 -------EWGLDRFACLRELRIRGGCPDLVSSPRFPASLTQLGISDMPTL-KCLSSVGENLTSLETLDLSNCPKLKYFSK 225 (281)
Q Consensus 154 -------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~i~~ 225 (281)
.....++++++.+.+.. |. ..+ ....+.+.+|..+ ..+........+++.|++..|...+.-..
T Consensus 348 ~~~d~~~~~~~~~~~~l~~~~l~~-~~-~~~------~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l 419 (482)
T KOG1947|consen 348 LTSDDLAELILRSCPKLTDLSLSY-CG-ISD------LGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGL 419 (482)
T ss_pred cCchhHhHHHHhcCCCcchhhhhh-hh-ccC------cchHHHhcCCcccchHHHHHhccCCccceEecccCccccccch
Confidence 11223344444444443 32 111 1114566667666 33321123333478888888765544221
Q ss_pred --CCC-CCCCcEEecCCCchHHHH
Q 023528 226 --QGL-PKSLLRLGIDDCPLMEKR 246 (281)
Q Consensus 226 --~~~-~~~L~~L~l~~c~~l~~~ 246 (281)
.+. ...+..+++.+|+.....
T Consensus 420 ~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 420 RCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred HHHhhhhhccccCCccCcccccch
Confidence 111 455677778888766544
No 54
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.83 E-value=0.00027 Score=63.12 Aligned_cols=128 Identities=18% Similarity=0.155 Sum_probs=71.9
Q ss_pred CCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccch-hhhccCCCcc
Q 023528 86 LPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFE-WGLDRFACLR 164 (281)
Q Consensus 86 ~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~ 164 (281)
..+++|+.|++++ ..++.+ .++..++.|+.|++.+ +.+..+.....+.+|+.+++.++. +..+.. . ...+.+++
T Consensus 115 ~~~~~L~~L~ls~-N~I~~i-~~l~~l~~L~~L~l~~-N~i~~~~~~~~l~~L~~l~l~~n~-i~~ie~~~-~~~~~~l~ 189 (414)
T KOG0531|consen 115 SSLVNLQVLDLSF-NKITKL-EGLSTLTLLKELNLSG-NLISDISGLESLKSLKLLDLSYNR-IVDIENDE-LSELISLE 189 (414)
T ss_pred hhhhcchheeccc-cccccc-cchhhccchhhheecc-CcchhccCCccchhhhcccCCcch-hhhhhhhh-hhhccchH
Confidence 3356788888877 456655 3566667777777777 456666655557777777777743 333321 1 35666777
Q ss_pred eEEeecCCCCCccCCC--CCCCccEEeccCCCCCccccccCCCCC--CcCEEeccCCCCcccc
Q 023528 165 ELRIRGGCPDLVSSPR--FPASLTQLGISDMPTLKCLSSVGENLT--SLETLDLSNCPKLKYF 223 (281)
Q Consensus 165 ~L~l~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~~~~~~l~--~L~~L~l~~c~~l~~i 223 (281)
.+.++. +.+..+.. ....+..+++.. +.+..+. ....+. +|+.+++.+ +.+..+
T Consensus 190 ~l~l~~--n~i~~i~~~~~~~~l~~~~l~~-n~i~~~~-~l~~~~~~~L~~l~l~~-n~i~~~ 247 (414)
T KOG0531|consen 190 ELDLGG--NSIREIEGLDLLKKLVLLSLLD-NKISKLE-GLNELVMLHLRELYLSG-NRISRS 247 (414)
T ss_pred HHhccC--CchhcccchHHHHHHHHhhccc-ccceecc-CcccchhHHHHHHhccc-Cccccc
Confidence 777776 44443332 222333344444 4444443 111222 278888887 344444
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.77 E-value=0.0043 Score=48.81 Aligned_cols=100 Identities=16% Similarity=0.177 Sum_probs=57.5
Q ss_pred CCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC----CCCCccEEeccCCCCCccccccC--CCCCCc
Q 023528 136 TNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVG--ENLTSL 209 (281)
Q Consensus 136 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~--~~l~~L 209 (281)
.+...+++.+ +.+..+. .|.++++|.+|.++. +.++.+.. ..+++..|.+.+ +.+..+..-. ..++.|
T Consensus 42 d~~d~iDLtd-Ndl~~l~--~lp~l~rL~tLll~n--NrIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L 115 (233)
T KOG1644|consen 42 DQFDAIDLTD-NDLRKLD--NLPHLPRLHTLLLNN--NRITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKL 115 (233)
T ss_pred cccceecccc-cchhhcc--cCCCccccceEEecC--CcceeeccchhhhccccceEEecC-cchhhhhhcchhccCCcc
Confidence 3445556655 3333332 355667777777776 55665543 455677777777 5555544111 677788
Q ss_pred CEEeccCCCCcccccCCC-----CCCCCcEEecCCCch
Q 023528 210 ETLDLSNCPKLKYFSKQG-----LPKSLLRLGIDDCPL 242 (281)
Q Consensus 210 ~~L~l~~c~~l~~i~~~~-----~~~~L~~L~l~~c~~ 242 (281)
++|.+-++ .++.-.... .+++|+.||+..-..
T Consensus 116 ~~Ltll~N-pv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 116 EYLTLLGN-PVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred ceeeecCC-chhcccCceeEEEEecCcceEeehhhhhH
Confidence 88887773 344333211 157788887766543
No 56
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.63 E-value=0.00022 Score=60.19 Aligned_cols=200 Identities=17% Similarity=0.124 Sum_probs=109.1
Q ss_pred CcCceeeccCCcCcc---cccc--------CCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEE
Q 023528 26 ATLEHLEVTHCSNLA---FLSW--------NGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRL 94 (281)
Q Consensus 26 ~~L~~L~l~~~~~l~---~l~~--------~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L 94 (281)
++|++.++++..--. .+|. +-..|+ |++++|+++. ++. .+-+.+.. -+..+..|+.|
T Consensus 58 ~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~-L~~ldLSDNA-~G~-------~g~~~l~~---ll~s~~~L~eL 125 (382)
T KOG1909|consen 58 KELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPK-LQKLDLSDNA-FGP-------KGIRGLEE---LLSSCTDLEEL 125 (382)
T ss_pred ccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCc-eeEeeccccc-cCc-------cchHHHHH---HHHhccCHHHH
Confidence 578888888753111 2232 445677 8899988864 221 11122222 22224577888
Q ss_pred EeccCcccccc--------------cccCcCCCCccEEeecCCcCCcccCCC------CCCCCcCeEEecCCCCcc---c
Q 023528 95 TIWKCKNLKAL--------------PNCIHNLTSLLHLEIRECRSLVSFPED------GFPTNLQSLVVDDLKISK---P 151 (281)
Q Consensus 95 ~l~~c~~l~~l--------------p~~~~~l~~L~~L~l~~~~~l~~l~~~------~~~~~L~~L~l~~~~~~~---~ 151 (281)
.+.+| .++.. .+-..+-+.|+.+...+ +.+...+.. ...+.|+.+.+..+.... .
T Consensus 126 ~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r-Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~ 203 (382)
T KOG1909|consen 126 YLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR-NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVT 203 (382)
T ss_pred hhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec-cccccccHHHHHHHHHhccccceEEEecccccCchhH
Confidence 88776 33211 11234556777776665 344433321 234678888887755431 1
Q ss_pred cchhhhccCCCcceEEeecCCCCCccCC-----C---CCCCccEEeccCCCCCc----cccccC-CCCCCcCEEeccCCC
Q 023528 152 LFEWGLDRFACLRELRIRGGCPDLVSSP-----R---FPASLTQLGISDMPTLK----CLSSVG-ENLTSLETLDLSNCP 218 (281)
Q Consensus 152 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~-----~---~~~~L~~L~l~~c~~l~----~l~~~~-~~l~~L~~L~l~~c~ 218 (281)
+-...+.++++|+.|++.+ +..+.-. . .+++|+.|.+.+|.--. .+-... ...++|+.+.+.+|.
T Consensus 204 al~eal~~~~~LevLdl~D--Ntft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 204 ALAEALEHCPHLEVLDLRD--NTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred HHHHHHHhCCcceeeeccc--chhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcch
Confidence 2234577888888888887 2222111 0 34478888888874211 222122 457888888888853
Q ss_pred CcccccC------CCCCCCCcEEecCCCch
Q 023528 219 KLKYFSK------QGLPKSLLRLGIDDCPL 242 (281)
Q Consensus 219 ~l~~i~~------~~~~~~L~~L~l~~c~~ 242 (281)
++.-.. .+--+.|++|++++|..
T Consensus 282 -It~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 282 -ITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred -hHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 321100 01146788888887764
No 57
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.16 E-value=0.00052 Score=62.22 Aligned_cols=40 Identities=28% Similarity=0.365 Sum_probs=17.2
Q ss_pred CCCcCeEEecCCCCcccc-chhhhccCCCcceEEeecCCCCC
Q 023528 135 PTNLQSLVVDDLKISKPL-FEWGLDRFACLRELRIRGGCPDL 175 (281)
Q Consensus 135 ~~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~ 175 (281)
+++|+.|.+.+|..+++. .......+++|++|++++ |..+
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~-c~~~ 308 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSG-CHGL 308 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeec-Cccc
Confidence 445555554444433221 111233445555555555 4443
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.92 E-value=0.026 Score=44.51 Aligned_cols=98 Identities=19% Similarity=0.259 Sum_probs=60.8
Q ss_pred CCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCc--cccchhhhccCCCc
Q 023528 88 STKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKIS--KPLFEWGLDRFACL 163 (281)
Q Consensus 88 ~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~--~~~~~~~~~~l~~L 163 (281)
..+...++++++ .+..+ ..+..++.|..|.+.+ +.++.+... .+.++|.+|.+.+|... .++. .+..++.|
T Consensus 41 ~d~~d~iDLtdN-dl~~l-~~lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~--pLa~~p~L 115 (233)
T KOG1644|consen 41 LDQFDAIDLTDN-DLRKL-DNLPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNNSIQELGDLD--PLASCPKL 115 (233)
T ss_pred ccccceeccccc-chhhc-ccCCCccccceEEecC-CcceeeccchhhhccccceEEecCcchhhhhhcc--hhccCCcc
Confidence 346677778774 44444 3566788888888876 566666544 46678888888875432 3333 46777788
Q ss_pred ceEEeecCCCCCccCCC-------CCCCccEEeccC
Q 023528 164 RELRIRGGCPDLVSSPR-------FPASLTQLGISD 192 (281)
Q Consensus 164 ~~L~l~~~~~~~~~~~~-------~~~~L~~L~l~~ 192 (281)
++|.+-+ +.+..-.. ..++|+.||+.+
T Consensus 116 ~~Ltll~--Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 116 EYLTLLG--NPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ceeeecC--CchhcccCceeEEEEecCcceEeehhh
Confidence 8887776 33332221 234666666655
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.91 E-value=0.0033 Score=52.42 Aligned_cols=79 Identities=22% Similarity=0.286 Sum_probs=39.3
Q ss_pred CcCceeeccCCcCcccccc----CCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCcc
Q 023528 26 ATLEHLEVTHCSNLAFLSW----NGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKN 101 (281)
Q Consensus 26 ~~L~~L~l~~~~~l~~l~~----~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~ 101 (281)
+.++++++.++. +..+.. ..++|. |+.|+++.+..- +-+..+| .+..+|+.|.+.| +.
T Consensus 71 ~~v~elDL~~N~-iSdWseI~~ile~lP~-l~~LNls~N~L~------------s~I~~lp---~p~~nl~~lVLNg-T~ 132 (418)
T KOG2982|consen 71 TDVKELDLTGNL-ISDWSEIGAILEQLPA-LTTLNLSCNSLS------------SDIKSLP---LPLKNLRVLVLNG-TG 132 (418)
T ss_pred hhhhhhhcccch-hccHHHHHHHHhcCcc-ceEeeccCCcCC------------CccccCc---ccccceEEEEEcC-CC
Confidence 455555555543 332222 455666 666666554311 1223333 3455888888877 55
Q ss_pred cccc--cccCcCCCCccEEeecC
Q 023528 102 LKAL--PNCIHNLTSLLHLEIRE 122 (281)
Q Consensus 102 l~~l--p~~~~~l~~L~~L~l~~ 122 (281)
+.+- -..+..++.++.|.++.
T Consensus 133 L~w~~~~s~l~~lP~vtelHmS~ 155 (418)
T KOG2982|consen 133 LSWTQSTSSLDDLPKVTELHMSD 155 (418)
T ss_pred CChhhhhhhhhcchhhhhhhhcc
Confidence 4332 11234455555555543
No 60
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.96 E-value=0.019 Score=28.06 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=11.9
Q ss_pred CccEEEeccCcccccccccCc
Q 023528 90 KLTRLTIWKCKNLKALPNCIH 110 (281)
Q Consensus 90 ~L~~L~l~~c~~l~~lp~~~~ 110 (281)
+|++|++++| .++.+|.+++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSS-EESEEGTTTT
T ss_pred CccEEECCCC-cCEeCChhhc
Confidence 4666777776 4456665544
No 61
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.79 E-value=0.0063 Score=47.86 Aligned_cols=81 Identities=16% Similarity=0.163 Sum_probs=53.0
Q ss_pred CccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC---CCCCCcCeEEecCCCCccccchhhhccCCCcceE
Q 023528 90 KLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED---GFPTNLQSLVVDDLKISKPLFEWGLDRFACLREL 166 (281)
Q Consensus 90 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 166 (281)
.++.++.+++.-..+=-..+..+++++.|.+.+|..+..+... +..++|+.|++++|+.+++..-..+.++++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4666776663222111145567778888888887666544321 3557888888888888877665567777777777
Q ss_pred Eeec
Q 023528 167 RIRG 170 (281)
Q Consensus 167 ~l~~ 170 (281)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 7776
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.68 E-value=0.24 Score=36.01 Aligned_cols=29 Identities=17% Similarity=0.408 Sum_probs=10.8
Q ss_pred CccEEeccCCCCCccccccC-CCCCCcCEEecc
Q 023528 184 SLTQLGISDMPTLKCLSSVG-ENLTSLETLDLS 215 (281)
Q Consensus 184 ~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~ 215 (281)
+++.+.+.. .+..++... .+. .|+.+.+.
T Consensus 82 ~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 82 NLKNIDIPS--NITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TECEEEETT--T-BEEHTTTTTT--T--EEE-T
T ss_pred cccccccCc--cccEEchhhhcCC-CceEEEEC
Confidence 445555433 244444333 343 55555554
No 63
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.54 E-value=0.053 Score=45.49 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=9.9
Q ss_pred CCCCcEEecCCCchHHH
Q 023528 229 PKSLLRLGIDDCPLMEK 245 (281)
Q Consensus 229 ~~~L~~L~l~~c~~l~~ 245 (281)
+++|+-|.+.+.|....
T Consensus 248 f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 248 FPQLVDLRVSENPLSDP 264 (418)
T ss_pred CchhheeeccCCccccc
Confidence 45666666666664443
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.18 E-value=0.0038 Score=51.58 Aligned_cols=59 Identities=19% Similarity=0.065 Sum_probs=25.3
Q ss_pred CCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeec
Q 023528 111 NLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRG 170 (281)
Q Consensus 111 ~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 170 (281)
.++.|+.|.++- +.+..+.....++.|+.|++..|..-.-.-..-+.++++|+.|.+..
T Consensus 39 kMp~lEVLsLSv-NkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 39 KMPLLEVLSLSV-NKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred hcccceeEEeec-cccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 445555555553 33444433344455555555542211111111344555555555544
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.07 E-value=0.063 Score=43.95 Aligned_cols=82 Identities=16% Similarity=0.034 Sum_probs=42.4
Q ss_pred CCCccEEEeccCc--ccccccccCcCCCCccEEeecCCcCCc---ccCCCCCCCCcCeEEecCCCCc--cccchhhhccC
Q 023528 88 STKLTRLTIWKCK--NLKALPNCIHNLTSLLHLEIRECRSLV---SFPEDGFPTNLQSLVVDDLKIS--KPLFEWGLDRF 160 (281)
Q Consensus 88 ~~~L~~L~l~~c~--~l~~lp~~~~~l~~L~~L~l~~~~~l~---~l~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~l 160 (281)
+|+|++|.++.+. -...++.-...+++|+++++++. .+. .+.....+.+|.+|++.+|... .+.-...|.-+
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll 142 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL 142 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence 4566777666652 22223222334466666666652 222 2222234456666666665432 33333455666
Q ss_pred CCcceEEeec
Q 023528 161 ACLRELRIRG 170 (281)
Q Consensus 161 ~~L~~L~l~~ 170 (281)
++|++|+-..
T Consensus 143 ~~L~~LD~~d 152 (260)
T KOG2739|consen 143 PSLKYLDGCD 152 (260)
T ss_pred hhhccccccc
Confidence 7777776655
No 66
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.58 E-value=0.015 Score=45.84 Aligned_cols=38 Identities=37% Similarity=0.432 Sum_probs=20.8
Q ss_pred CCCCcCEEeccCCCCcccccCC--CCCCCCcEEecCCCch
Q 023528 205 NLTSLETLDLSNCPKLKYFSKQ--GLPKSLLRLGIDDCPL 242 (281)
Q Consensus 205 ~l~~L~~L~l~~c~~l~~i~~~--~~~~~L~~L~l~~c~~ 242 (281)
-.++|+.|++++|+++++-... ..+++|+.|.+.+.+.
T Consensus 149 ~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 149 LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchh
Confidence 4456666666666666552211 1145666666666553
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.31 E-value=1.1 Score=32.33 Aligned_cols=77 Identities=19% Similarity=0.275 Sum_probs=35.3
Q ss_pred CCCccEEEeccCccccccc-ccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcc
Q 023528 88 STKLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLR 164 (281)
Q Consensus 88 ~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 164 (281)
+++|+.+.+.. .+..++ ..+..+++|+.+.+.+ .+..++.. ...++++.+.+.+ ....++...+..+++++
T Consensus 11 ~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 11 CSNLESITFPN--TIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp -TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTEC
T ss_pred CCCCCEEEECC--CeeEeChhhcccccccccccccc--cccccceeeeecccccccccccc--ccccccccccccccccc
Confidence 44666666653 233443 3455666677777654 24444433 3344677777753 33344444566677777
Q ss_pred eEEeec
Q 023528 165 ELRIRG 170 (281)
Q Consensus 165 ~L~l~~ 170 (281)
.+.+..
T Consensus 85 ~i~~~~ 90 (129)
T PF13306_consen 85 NIDIPS 90 (129)
T ss_dssp EEEETT
T ss_pred ccccCc
Confidence 777754
No 68
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.03 E-value=0.12 Score=23.36 Aligned_cols=10 Identities=20% Similarity=0.232 Sum_probs=3.7
Q ss_pred CccEEEeccC
Q 023528 90 KLTRLTIWKC 99 (281)
Q Consensus 90 ~L~~L~l~~c 99 (281)
+|+.|++++|
T Consensus 2 ~L~~L~l~~n 11 (17)
T PF13504_consen 2 NLRTLDLSNN 11 (17)
T ss_dssp T-SEEEETSS
T ss_pred ccCEEECCCC
Confidence 3444444443
No 69
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=91.96 E-value=0.011 Score=43.83 Aligned_cols=59 Identities=15% Similarity=0.215 Sum_probs=37.9
Q ss_pred hccCCCcceEEeecCCCCCccCCC----CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCC
Q 023528 157 LDRFACLRELRIRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCP 218 (281)
Q Consensus 157 ~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 218 (281)
+..-..|...++++ +...+||. .++.+.+|++.+ +++.++|.+...++.|+.|+++.++
T Consensus 49 l~~~~el~~i~ls~--N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 49 LSKGYELTKISLSD--NGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRFNP 111 (177)
T ss_pred HhCCceEEEEeccc--chhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcccccCc
Confidence 34445566666666 56666665 344667777777 6777777666667777777777743
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.53 E-value=0.18 Score=41.33 Aligned_cols=99 Identities=23% Similarity=0.243 Sum_probs=57.6
Q ss_pred CccEEEeccCcccccccccCcCCCCccEEeecCC--cCCcccCCC-CCCCCcCeEEecCCCCc--cccchhhhccCCCcc
Q 023528 90 KLTRLTIWKCKNLKALPNCIHNLTSLLHLEIREC--RSLVSFPED-GFPTNLQSLVVDDLKIS--KPLFEWGLDRFACLR 164 (281)
Q Consensus 90 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~--~~l~~l~~~-~~~~~L~~L~l~~~~~~--~~~~~~~~~~l~~L~ 164 (281)
.|+.|.+.++ .++.+ ..+..++.|++|.++.. .....++.. ...++|+++++++|..- .++. .+..+.+|.
T Consensus 44 ~le~ls~~n~-gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~--pl~~l~nL~ 119 (260)
T KOG2739|consen 44 ELELLSVINV-GLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR--PLKELENLK 119 (260)
T ss_pred chhhhhhhcc-ceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc--hhhhhcchh
Confidence 5666666664 33333 35557788888888754 122222222 33488888888885432 3333 356677788
Q ss_pred eEEeecCCCCCccCCC-------CCCCccEEeccCCC
Q 023528 165 ELRIRGGCPDLVSSPR-------FPASLTQLGISDMP 194 (281)
Q Consensus 165 ~L~l~~~~~~~~~~~~-------~~~~L~~L~l~~c~ 194 (281)
.|++.. |.... ... ..++|+.|+-.+..
T Consensus 120 ~Ldl~n-~~~~~-l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 120 SLDLFN-CSVTN-LDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhccc-CCccc-cccHHHHHHHHhhhhccccccccC
Confidence 888877 54433 221 45577777666643
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.84 E-value=0.018 Score=47.68 Aligned_cols=55 Identities=24% Similarity=0.225 Sum_probs=29.1
Q ss_pred CCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeec
Q 023528 112 LTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRG 170 (281)
Q Consensus 112 l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 170 (281)
+.+.+.|+..|| ++..+.....++.|+.|.++- +.++++. .+.+|++|++|.+..
T Consensus 18 l~~vkKLNcwg~-~L~DIsic~kMp~lEVLsLSv-NkIssL~--pl~rCtrLkElYLRk 72 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDISICEKMPLLEVLSLSV-NKISSLA--PLQRCTRLKELYLRK 72 (388)
T ss_pred HHHhhhhcccCC-CccHHHHHHhcccceeEEeec-cccccch--hHHHHHHHHHHHHHh
Confidence 445566666664 444443334555666666655 3333333 355566666665554
No 72
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=89.15 E-value=0.036 Score=41.16 Aligned_cols=55 Identities=18% Similarity=0.221 Sum_probs=24.9
Q ss_pred CCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceEEeec
Q 023528 113 TSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRG 170 (281)
Q Consensus 113 ~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 170 (281)
..|+..++++ +.++.+|.. ..++.++++++.+ +.+.++|.. +..++.|+.|+++.
T Consensus 53 ~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE-~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 53 YELTKISLSD-NGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEE-LAAMPALRSLNLRF 109 (177)
T ss_pred ceEEEEeccc-chhhhCCHHHhhccchhhhhhcch-hhhhhchHH-HhhhHHhhhccccc
Confidence 3444444444 344444432 2334445555544 344444443 44555555555554
No 73
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=87.14 E-value=0.47 Score=24.01 Aligned_cols=16 Identities=38% Similarity=0.690 Sum_probs=9.4
Q ss_pred CCcCEEeccCCCCccc
Q 023528 207 TSLETLDLSNCPKLKY 222 (281)
Q Consensus 207 ~~L~~L~l~~c~~l~~ 222 (281)
++|++|++++|.++++
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 4566666666655544
No 74
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=86.51 E-value=1.2 Score=37.15 Aligned_cols=178 Identities=18% Similarity=0.195 Sum_probs=92.9
Q ss_pred CcCceeeccCCcCccc----cc-cCCCcCCcCcEEEecCCc--ch-hccccceeecCCCCCccCCCCCCCCCCccEEEec
Q 023528 26 ATLEHLEVTHCSNLAF----LS-WNGNLPRALKYLYVKDCS--KL-ESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIW 97 (281)
Q Consensus 26 ~~L~~L~l~~~~~l~~----l~-~~~~l~~~L~~L~l~~~~--~l-~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 97 (281)
..++.++++++..-+. +. .++.-.+ |++.+++..- .. .+++. .+.-+.....+||+|+..+++
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~-L~vvnfsd~ftgr~kde~~~--------~L~~Ll~aLlkcp~l~~v~LS 100 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRN-LRVVNFSDAFTGRDKDELYS--------NLVMLLKALLKCPRLQKVDLS 100 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcc-eeEeehhhhhhcccHHHHHH--------HHHHHHHHHhcCCcceeeecc
Confidence 5777888888763221 11 1455455 7776665521 00 01111 122222334458899999999
Q ss_pred cCccccccccc----CcCCCCccEEeecCCcCCcccCCC---------------CCCCCcCeEEecCCCCccccch----
Q 023528 98 KCKNLKALPNC----IHNLTSLLHLEIRECRSLVSFPED---------------GFPTNLQSLVVDDLKISKPLFE---- 154 (281)
Q Consensus 98 ~c~~l~~lp~~----~~~l~~L~~L~l~~~~~l~~l~~~---------------~~~~~L~~L~l~~~~~~~~~~~---- 154 (281)
++.+-...|+. +.+-+.|+||.+++| +++.+... ..-|.|+++.+.. +.+...+.
T Consensus 101 DNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr-NRlengs~~~~a 178 (388)
T COG5238 101 DNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR-NRLENGSKELSA 178 (388)
T ss_pred ccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc-chhccCcHHHHH
Confidence 97665555443 356678999999885 55443221 1236777777665 33322221
Q ss_pred hhhccCCCcceEEeecCCCCCccCCC---------CCCCccEEeccCCCCCcccccc-----CCCCCCcCEEeccCC
Q 023528 155 WGLDRFACLRELRIRGGCPDLVSSPR---------FPASLTQLGISDMPTLKCLSSV-----GENLTSLETLDLSNC 217 (281)
Q Consensus 155 ~~~~~l~~L~~L~l~~~~~~~~~~~~---------~~~~L~~L~l~~c~~l~~l~~~-----~~~l~~L~~L~l~~c 217 (281)
..+..-.+|+.+.+.+ +.+..-.. ..++|+.|++.+ +-++...+. ....+.|++|.+..|
T Consensus 179 ~~l~sh~~lk~vki~q--NgIrpegv~~L~~~gl~y~~~LevLDlqD-Ntft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 179 ALLESHENLKEVKIQQ--NGIRPEGVTMLAFLGLFYSHSLEVLDLQD-NTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred HHHHhhcCceeEEeee--cCcCcchhHHHHHHHHHHhCcceeeeccc-cchhhhhHHHHHHHhcccchhhhccccch
Confidence 1222224677777776 33321100 356677777777 333321100 023344677777766
No 75
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=71.68 E-value=3.2 Score=34.75 Aligned_cols=35 Identities=17% Similarity=0.091 Sum_probs=19.6
Q ss_pred CcCceeeccCCcCcc---cc--------ccCCCcCCcCcEEEecCCc
Q 023528 26 ATLEHLEVTHCSNLA---FL--------SWNGNLPRALKYLYVKDCS 61 (281)
Q Consensus 26 ~~L~~L~l~~~~~l~---~l--------~~~~~l~~~L~~L~l~~~~ 61 (281)
.+|++.++++...-. .+ +.+...|+ |+..+++++.
T Consensus 58 ~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~-l~~v~LSDNA 103 (388)
T COG5238 58 RNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPR-LQKVDLSDNA 103 (388)
T ss_pred cceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCc-ceeeeccccc
Confidence 567777776643110 11 12555677 7777777754
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=71.11 E-value=3.2 Score=20.72 Aligned_cols=18 Identities=39% Similarity=0.530 Sum_probs=8.3
Q ss_pred CCcCEEeccCCCCcccccC
Q 023528 207 TSLETLDLSNCPKLKYFSK 225 (281)
Q Consensus 207 ~~L~~L~l~~c~~l~~i~~ 225 (281)
++|++|++++ ++++.+|.
T Consensus 2 ~~L~~L~L~~-N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSN-NQLSSLPP 19 (26)
T ss_pred CCCCEEECCC-CcCCcCCH
Confidence 3445555554 24444443
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=71.11 E-value=3.2 Score=20.72 Aligned_cols=18 Identities=39% Similarity=0.530 Sum_probs=8.3
Q ss_pred CCcCEEeccCCCCcccccC
Q 023528 207 TSLETLDLSNCPKLKYFSK 225 (281)
Q Consensus 207 ~~L~~L~l~~c~~l~~i~~ 225 (281)
++|++|++++ ++++.+|.
T Consensus 2 ~~L~~L~L~~-N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSN-NQLSSLPP 19 (26)
T ss_pred CCCCEEECCC-CcCCcCCH
Confidence 3445555554 24444443
No 78
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=61.71 E-value=6 Score=20.13 Aligned_cols=16 Identities=38% Similarity=0.576 Sum_probs=8.3
Q ss_pred CccEEeccCCCCCcccc
Q 023528 184 SLTQLGISDMPTLKCLS 200 (281)
Q Consensus 184 ~L~~L~l~~c~~l~~l~ 200 (281)
+|+.|.+++ ++++.+|
T Consensus 3 ~L~~L~vs~-N~Lt~LP 18 (26)
T smart00364 3 SLKELNVSN-NQLTSLP 18 (26)
T ss_pred ccceeecCC-CccccCc
Confidence 455555555 4455555
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=56.88 E-value=8.5 Score=18.67 Aligned_cols=12 Identities=17% Similarity=0.240 Sum_probs=6.0
Q ss_pred CCccEEEeccCc
Q 023528 89 TKLTRLTIWKCK 100 (281)
Q Consensus 89 ~~L~~L~l~~c~ 100 (281)
++|++|++++|.
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 466666666653
No 80
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=45.24 E-value=43 Score=19.14 Aligned_cols=10 Identities=40% Similarity=0.727 Sum_probs=4.0
Q ss_pred CCCCcCeEEe
Q 023528 134 FPTNLQSLVV 143 (281)
Q Consensus 134 ~~~~L~~L~l 143 (281)
.|++|++|.+
T Consensus 32 lP~sl~~L~f 41 (44)
T PF05725_consen 32 LPNSLKSLSF 41 (44)
T ss_pred cCCCceEEEe
Confidence 3344444433
No 81
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=33.68 E-value=38 Score=17.13 Aligned_cols=15 Identities=27% Similarity=0.483 Sum_probs=6.7
Q ss_pred CccEEeccCCCCCccc
Q 023528 184 SLTQLGISDMPTLKCL 199 (281)
Q Consensus 184 ~L~~L~l~~c~~l~~l 199 (281)
+|+.|++++ +.++.+
T Consensus 3 ~L~~L~L~~-NkI~~I 17 (26)
T smart00365 3 NLEELDLSQ-NKIKKI 17 (26)
T ss_pred ccCEEECCC-Ccccee
Confidence 444455554 344433
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=30.82 E-value=35 Score=17.35 Aligned_cols=11 Identities=18% Similarity=0.480 Sum_probs=6.2
Q ss_pred cCceeeccCCc
Q 023528 27 TLEHLEVTHCS 37 (281)
Q Consensus 27 ~L~~L~l~~~~ 37 (281)
+|++|+++++.
T Consensus 3 ~L~~LdL~~N~ 13 (28)
T smart00368 3 SLRELDLSNNK 13 (28)
T ss_pred ccCEEECCCCC
Confidence 55566665544
Done!