Query 023528
Match_columns 281
No_of_seqs 145 out of 1568
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 08:21:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023528.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023528hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.8 6.2E-20 2.1E-24 157.3 17.4 155 80-238 141-309 (328)
2 3rgz_A Protein brassinosteroid 99.8 1.1E-20 3.7E-25 179.3 12.2 128 136-271 632-766 (768)
3 4fcg_A Uncharacterized protein 99.8 1.7E-19 5.7E-24 154.6 15.7 198 26-246 81-293 (328)
4 4fmz_A Internalin; leucine ric 99.8 1.1E-18 3.9E-23 150.3 18.4 224 2-241 44-298 (347)
5 2xwt_C Thyrotropin receptor; s 99.8 4.5E-18 1.5E-22 139.0 17.3 208 12-243 20-239 (239)
6 2id5_A Lingo-1, leucine rich r 99.8 4.6E-18 1.6E-22 152.7 18.5 81 157-240 196-282 (477)
7 4fmz_A Internalin; leucine ric 99.8 2.2E-18 7.6E-23 148.4 15.6 250 1-279 65-347 (347)
8 1xku_A Decorin; proteoglycan, 99.8 1.3E-17 4.4E-22 142.8 19.8 172 88-275 144-329 (330)
9 3rgz_A Protein brassinosteroid 99.8 2.5E-18 8.6E-23 163.1 16.4 166 3-170 369-547 (768)
10 2id5_A Lingo-1, leucine rich r 99.8 1.9E-17 6.4E-22 148.7 21.3 148 86-240 149-306 (477)
11 1ogq_A PGIP-2, polygalacturona 99.8 8.8E-19 3E-23 149.1 10.5 234 3-241 51-302 (313)
12 3zyi_A Leucine-rich repeat-con 99.8 8.3E-17 2.8E-21 143.7 21.9 215 13-241 64-301 (452)
13 3o6n_A APL1; leucine-rich repe 99.8 5.5E-17 1.9E-21 142.0 20.2 99 136-241 226-329 (390)
14 3v47_A TOLL-like receptor 5B a 99.8 6.9E-17 2.4E-21 144.0 21.0 58 156-216 294-356 (455)
15 2ft3_A Biglycan; proteoglycan, 99.8 3.5E-17 1.2E-21 140.2 17.5 247 4-275 35-330 (332)
16 3zyj_A Leucine-rich repeat-con 99.8 1.7E-16 5.8E-21 141.2 22.1 215 13-241 53-290 (440)
17 3zyi_A Leucine-rich repeat-con 99.8 1.3E-16 4.4E-21 142.4 21.2 206 2-218 75-301 (452)
18 4eco_A Uncharacterized protein 99.7 2.7E-17 9.3E-22 152.8 16.5 231 1-240 248-546 (636)
19 3v47_A TOLL-like receptor 5B a 99.7 1E-16 3.4E-21 143.0 19.5 58 182-241 298-358 (455)
20 1ozn_A Reticulon 4 receptor; N 99.7 1.2E-16 4.2E-21 133.9 18.9 204 13-241 21-236 (285)
21 3vq2_A TLR4, TOLL-like recepto 99.7 7.2E-17 2.5E-21 149.0 19.1 228 3-241 308-556 (606)
22 3t6q_A CD180 antigen; protein- 99.7 5.1E-17 1.7E-21 150.0 18.1 231 3-241 255-511 (606)
23 3o6n_A APL1; leucine-rich repe 99.7 7.9E-17 2.7E-21 141.0 18.3 77 161-241 226-306 (390)
24 3oja_B Anopheles plasmodium-re 99.7 1.2E-16 3.9E-21 147.6 19.7 81 156-241 273-356 (597)
25 3zyj_A Leucine-rich repeat-con 99.7 2.2E-16 7.6E-21 140.4 20.3 206 2-218 64-290 (440)
26 3t6q_A CD180 antigen; protein- 99.7 2.8E-16 9.6E-21 145.1 21.7 258 1-278 277-560 (606)
27 1xku_A Decorin; proteoglycan, 99.7 8.8E-16 3E-20 131.4 22.3 221 4-241 33-274 (330)
28 4eco_A Uncharacterized protein 99.7 7.9E-17 2.7E-21 149.7 17.0 231 1-241 205-499 (636)
29 3vq2_A TLR4, TOLL-like recepto 99.7 1.5E-16 5E-21 147.0 17.7 229 2-241 285-532 (606)
30 4ecn_A Leucine-rich repeat pro 99.7 1.9E-16 6.6E-21 150.9 18.2 230 1-241 490-787 (876)
31 2z66_A Variable lymphocyte rec 99.7 1.4E-16 4.8E-21 134.9 15.4 218 13-241 17-259 (306)
32 2z80_A TOLL-like receptor 2, v 99.7 9.1E-17 3.1E-21 138.8 14.1 42 199-241 269-312 (353)
33 3bz5_A Internalin-J, INLJ; leu 99.7 4.1E-16 1.4E-20 139.3 18.4 131 1-145 63-200 (457)
34 3oja_B Anopheles plasmodium-re 99.7 4.2E-16 1.4E-20 143.9 19.0 121 137-278 233-358 (597)
35 2z66_A Variable lymphocyte rec 99.7 2.1E-16 7.1E-21 133.8 15.0 227 29-278 10-261 (306)
36 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 9.5E-16 3.2E-20 140.5 20.4 151 87-241 351-508 (562)
37 3bz5_A Internalin-J, INLJ; leu 99.7 1.8E-15 6.2E-20 135.1 21.7 193 2-216 42-242 (457)
38 2z7x_B TOLL-like receptor 1, v 99.7 4.5E-16 1.5E-20 141.2 18.0 105 134-241 372-479 (520)
39 1jl5_A Outer protein YOPM; leu 99.7 3.4E-15 1.2E-19 133.2 22.6 33 26-60 131-163 (454)
40 4ecn_A Leucine-rich repeat pro 99.7 7.3E-16 2.5E-20 146.9 18.9 230 1-241 447-739 (876)
41 2ft3_A Biglycan; proteoglycan, 99.7 1.3E-15 4.3E-20 130.5 18.6 202 27-241 34-252 (332)
42 3g06_A SSPH2 (leucine-rich rep 99.7 4.6E-15 1.6E-19 136.9 23.5 56 4-67 42-97 (622)
43 1o6v_A Internalin A; bacterial 99.7 8.6E-16 2.9E-20 137.6 18.0 91 2-99 46-144 (466)
44 1o6v_A Internalin A; bacterial 99.7 8.3E-16 2.8E-20 137.7 17.9 146 87-241 175-342 (466)
45 1p9a_G Platelet glycoprotein I 99.7 2.2E-15 7.4E-20 126.8 19.1 190 1-218 9-206 (290)
46 1ziw_A TOLL-like receptor 3; i 99.7 2.8E-15 9.6E-20 140.2 20.7 190 45-241 401-620 (680)
47 1ozn_A Reticulon 4 receptor; N 99.7 3.5E-15 1.2E-19 125.0 19.1 195 2-219 32-237 (285)
48 3o53_A Protein LRIM1, AGAP0063 99.7 4.5E-16 1.5E-20 132.6 13.3 147 89-243 99-250 (317)
49 1ogq_A PGIP-2, polygalacturona 99.7 2.7E-16 9.3E-21 133.7 11.8 211 26-241 50-279 (313)
50 3g06_A SSPH2 (leucine-rich rep 99.7 5.9E-15 2E-19 136.2 21.5 231 2-278 61-297 (622)
51 2o6q_A Variable lymphocyte rec 99.7 1.1E-14 3.7E-19 121.1 21.0 185 6-217 20-215 (270)
52 3j0a_A TOLL-like receptor 5; m 99.7 1.2E-14 4E-19 139.3 24.1 118 3-123 25-158 (844)
53 1h6u_A Internalin H; cell adhe 99.7 1.4E-15 4.8E-20 129.0 15.7 119 88-216 106-226 (308)
54 2z80_A TOLL-like receptor 2, v 99.7 2.6E-15 9.1E-20 129.6 17.2 208 3-220 53-314 (353)
55 2z62_A TOLL-like receptor 4, v 99.7 6E-15 2.1E-19 123.0 18.8 208 14-246 18-246 (276)
56 1jl5_A Outer protein YOPM; leu 99.7 1.5E-14 5E-19 129.2 22.4 188 27-240 174-367 (454)
57 3oja_A Leucine-rich immune mol 99.7 1.4E-15 4.7E-20 137.0 15.2 210 3-243 35-250 (487)
58 4ay9_X Follicle-stimulating ho 99.7 5.8E-15 2E-19 127.4 18.1 216 13-239 19-255 (350)
59 2z63_A TOLL-like receptor 4, v 99.7 1.2E-15 4.3E-20 139.6 14.6 206 27-241 305-529 (570)
60 2z7x_B TOLL-like receptor 1, v 99.7 1.4E-14 4.6E-19 131.4 21.0 80 134-217 322-409 (520)
61 1ziw_A TOLL-like receptor 3; i 99.7 2.2E-14 7.6E-19 134.1 23.0 209 26-241 329-595 (680)
62 2z81_A CD282 antigen, TOLL-lik 99.6 5.6E-15 1.9E-19 134.7 18.2 118 3-124 27-159 (549)
63 2o6q_A Variable lymphocyte rec 99.6 4E-14 1.4E-18 117.7 21.3 190 26-241 16-216 (270)
64 1h6u_A Internalin H; cell adhe 99.6 2.9E-15 9.8E-20 127.1 14.5 186 26-241 41-228 (308)
65 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 1.1E-14 3.7E-19 133.5 18.7 33 26-60 76-110 (562)
66 1p9a_G Platelet glycoprotein I 99.6 1.4E-14 4.7E-19 121.8 17.1 190 26-241 10-206 (290)
67 2z63_A TOLL-like receptor 4, v 99.6 6.5E-15 2.2E-19 134.8 15.3 232 26-278 282-531 (570)
68 2xwt_C Thyrotropin receptor; s 99.6 1.2E-14 4.1E-19 118.6 14.8 193 2-219 31-238 (239)
69 3rfs_A Internalin B, repeat mo 99.6 1.2E-14 4E-19 121.1 14.8 168 26-218 41-216 (272)
70 2z81_A CD282 antigen, TOLL-lik 99.6 2.5E-14 8.5E-19 130.4 17.7 206 13-242 15-235 (549)
71 1wwl_A Monocyte differentiatio 99.6 6.7E-15 2.3E-19 125.0 13.0 211 3-241 44-285 (312)
72 3rfs_A Internalin B, repeat mo 99.6 4.7E-14 1.6E-18 117.4 17.9 144 88-239 62-214 (272)
73 2z62_A TOLL-like receptor 4, v 99.6 3.4E-14 1.2E-18 118.4 16.7 190 3-218 29-235 (276)
74 3j0a_A TOLL-like receptor 5; m 99.6 1.7E-13 6E-18 131.2 23.5 100 113-217 266-372 (844)
75 1wwl_A Monocyte differentiatio 99.6 8.6E-15 2.9E-19 124.3 11.9 198 26-241 95-307 (312)
76 4ay9_X Follicle-stimulating ho 99.6 4.9E-14 1.7E-18 121.6 16.5 207 2-216 30-255 (350)
77 3o53_A Protein LRIM1, AGAP0063 99.6 7.9E-16 2.7E-20 131.0 5.0 228 2-243 34-275 (317)
78 4glp_A Monocyte differentiatio 99.5 1E-13 3.5E-18 117.5 14.3 147 88-241 144-305 (310)
79 3m19_A Variable lymphocyte rec 99.5 7.8E-13 2.7E-17 108.6 18.5 166 27-217 15-189 (251)
80 2ast_B S-phase kinase-associat 99.5 2.4E-15 8.3E-20 128.7 2.8 199 26-240 70-282 (336)
81 3cvr_A Invasion plasmid antige 99.5 5E-13 1.7E-17 122.0 17.8 176 3-219 60-242 (571)
82 1h6t_A Internalin B; cell adhe 99.5 1.9E-13 6.7E-18 114.8 13.4 168 26-223 46-215 (291)
83 3m19_A Variable lymphocyte rec 99.5 1.9E-12 6.4E-17 106.3 18.5 161 6-192 18-188 (251)
84 1h6t_A Internalin B; cell adhe 99.5 7.3E-14 2.5E-18 117.4 10.2 185 27-241 25-211 (291)
85 3oja_A Leucine-rich immune mol 99.5 2.4E-13 8.3E-18 122.3 13.3 188 1-219 57-249 (487)
86 4glp_A Monocyte differentiatio 99.5 2.9E-13 1E-17 114.7 13.2 143 70-218 150-305 (310)
87 4g8a_A TOLL-like receptor 4; l 99.5 1.8E-12 6.1E-17 119.7 18.8 206 27-240 350-577 (635)
88 2ast_B S-phase kinase-associat 99.5 5.8E-15 2E-19 126.4 1.9 215 2-241 70-304 (336)
89 1m9s_A Internalin B; cell inva 99.5 1.9E-13 6.5E-18 125.9 10.9 169 26-224 43-213 (605)
90 4ezg_A Putative uncharacterize 99.4 6.2E-13 2.1E-17 105.2 11.3 148 26-197 44-194 (197)
91 3cvr_A Invasion plasmid antige 99.4 5.2E-12 1.8E-16 115.3 18.5 178 26-244 59-244 (571)
92 1m9s_A Internalin B; cell inva 99.4 9.6E-13 3.3E-17 121.2 13.8 169 2-200 43-213 (605)
93 4ezg_A Putative uncharacterize 99.4 6.5E-13 2.2E-17 105.1 10.2 147 46-216 41-190 (197)
94 1xeu_A Internalin C; cellular 99.4 3.2E-13 1.1E-17 111.8 7.5 161 27-217 20-182 (263)
95 2o6s_A Variable lymphocyte rec 99.4 1.2E-11 4E-16 98.6 15.1 166 13-206 17-188 (208)
96 3e6j_A Variable lymphocyte rec 99.4 3.4E-11 1.2E-15 97.5 16.6 134 77-217 30-169 (229)
97 3e6j_A Variable lymphocyte rec 99.3 5.7E-11 2E-15 96.1 15.1 100 87-192 62-168 (229)
98 1xeu_A Internalin C; cellular 99.3 7.3E-12 2.5E-16 103.6 9.0 166 4-200 21-188 (263)
99 2v9t_B SLIT homolog 2 protein 99.3 1.1E-10 3.6E-15 94.0 15.3 133 77-217 22-162 (220)
100 2xot_A Amphoterin-induced prot 99.3 6.2E-11 2.1E-15 102.5 14.6 123 88-216 63-198 (361)
101 4g8a_A TOLL-like receptor 4; l 99.3 1.7E-10 5.9E-15 106.4 17.6 187 26-218 371-578 (635)
102 2ca6_A RAN GTPase-activating p 99.3 1E-12 3.5E-17 114.7 2.2 33 26-60 32-70 (386)
103 2v9t_B SLIT homolog 2 protein 99.2 2.7E-10 9.3E-15 91.6 15.1 141 29-192 14-161 (220)
104 2o6s_A Variable lymphocyte rec 99.2 4E-10 1.4E-14 89.6 15.9 81 87-170 50-133 (208)
105 2xot_A Amphoterin-induced prot 99.2 1.2E-10 4.1E-15 100.7 12.6 156 77-241 29-200 (361)
106 2v70_A SLIT-2, SLIT homolog 2 99.2 4E-10 1.4E-14 90.6 14.6 133 77-217 22-163 (220)
107 2v70_A SLIT-2, SLIT homolog 2 99.2 6.4E-10 2.2E-14 89.4 15.2 101 87-192 55-162 (220)
108 2ell_A Acidic leucine-rich nuc 99.2 2.4E-10 8.2E-15 87.7 11.1 126 24-170 22-156 (168)
109 2ell_A Acidic leucine-rich nuc 99.2 2.5E-10 8.4E-15 87.6 11.1 130 89-224 24-163 (168)
110 3goz_A Leucine-rich repeat-con 99.2 5.5E-12 1.9E-16 109.2 1.5 36 24-61 20-62 (362)
111 3ogk_B Coronatine-insensitive 99.2 1.7E-11 5.9E-16 112.6 4.8 127 111-241 376-524 (592)
112 2p1m_B Transport inhibitor res 99.1 4.5E-12 1.5E-16 116.5 -0.3 62 1-64 155-225 (594)
113 1z7x_W Ribonuclease inhibitor; 99.1 2.4E-12 8.3E-17 114.7 -2.2 57 2-61 3-67 (461)
114 2ca6_A RAN GTPase-activating p 99.1 8.3E-12 2.8E-16 108.9 0.6 224 1-241 31-314 (386)
115 3goz_A Leucine-rich repeat-con 99.1 1.4E-11 5E-16 106.5 2.0 218 2-241 22-295 (362)
116 2p1m_B Transport inhibitor res 99.1 7.2E-12 2.4E-16 115.1 -0.4 59 1-61 129-195 (594)
117 2je0_A Acidic leucine-rich nuc 99.1 4.6E-10 1.6E-14 84.3 8.6 124 25-169 16-148 (149)
118 1z7x_W Ribonuclease inhibitor; 99.0 8E-12 2.7E-16 111.3 -2.3 33 27-61 86-124 (461)
119 2je0_A Acidic leucine-rich nuc 99.0 6.2E-10 2.1E-14 83.6 7.5 80 89-170 17-97 (149)
120 1dce_A Protein (RAB geranylger 99.0 6E-11 2.1E-15 108.5 2.2 173 26-214 349-567 (567)
121 1a9n_A U2A', U2A'; complex (nu 99.0 2.7E-09 9.1E-14 82.5 10.1 61 184-246 89-156 (176)
122 1a9n_A U2A', U2A'; complex (nu 99.0 8.3E-10 2.8E-14 85.4 6.9 124 25-170 18-149 (176)
123 3ogk_B Coronatine-insensitive 99.0 2.6E-10 9E-15 104.7 4.6 148 87-239 162-327 (592)
124 2wfh_A SLIT homolog 2 protein 99.0 1E-08 3.5E-13 80.6 12.3 88 78-170 22-111 (193)
125 2o6r_A Variable lymphocyte rec 98.9 1.6E-08 5.6E-13 78.0 13.2 119 91-217 9-134 (177)
126 1w8a_A SLIT protein; signaling 98.9 1.1E-08 3.9E-13 80.2 11.9 78 90-170 30-111 (192)
127 2o6r_A Variable lymphocyte rec 98.9 2.1E-08 7.1E-13 77.5 13.1 100 89-193 28-134 (177)
128 2wfh_A SLIT homolog 2 protein 98.9 2.5E-08 8.6E-13 78.3 13.6 118 92-217 13-136 (193)
129 3sb4_A Hypothetical leucine ri 98.9 1.9E-08 6.6E-13 85.6 13.2 95 135-236 225-327 (329)
130 1w8a_A SLIT protein; signaling 98.9 5E-08 1.7E-12 76.5 13.5 35 87-122 76-111 (192)
131 3sb4_A Hypothetical leucine ri 98.9 1.4E-08 4.7E-13 86.5 11.1 96 112-214 225-328 (329)
132 1dce_A Protein (RAB geranylger 98.8 1.8E-08 6E-13 92.2 9.5 117 52-190 443-567 (567)
133 4fdw_A Leucine rich hypothetic 98.8 6.9E-07 2.4E-11 78.2 18.9 118 113-239 248-379 (401)
134 4b8c_D Glucose-repressible alc 98.7 1.4E-08 4.9E-13 95.5 7.5 149 80-240 215-369 (727)
135 4b8c_D Glucose-repressible alc 98.6 5.7E-08 1.9E-12 91.5 8.7 109 104-218 215-327 (727)
136 4fdw_A Leucine rich hypothetic 98.6 5E-06 1.7E-10 72.7 20.0 203 4-240 137-355 (401)
137 3g39_A Variable lymphocyte rec 98.6 5.3E-07 1.8E-11 69.1 10.8 75 91-170 11-87 (170)
138 2r9u_A Variable lymphocyte rec 98.6 6.6E-07 2.2E-11 68.9 10.9 98 92-217 15-115 (174)
139 1ds9_A Outer arm dynein; leuci 98.5 5.1E-10 1.7E-14 88.3 -7.9 107 105-217 40-150 (198)
140 3g39_A Variable lymphocyte rec 98.5 1.4E-06 4.7E-11 66.8 11.0 78 90-170 31-111 (170)
141 2r9u_A Variable lymphocyte rec 98.4 1.5E-06 5E-11 66.9 10.3 78 90-170 34-114 (174)
142 3e4g_A ATP synthase subunit S, 98.4 3.4E-07 1.2E-11 70.2 5.5 87 89-177 61-154 (176)
143 1ds9_A Outer arm dynein; leuci 98.4 6E-09 2E-13 82.1 -4.9 10 204-213 171-180 (198)
144 3e4g_A ATP synthase subunit S, 98.3 2.3E-07 8E-12 71.1 2.7 84 137-222 62-154 (176)
145 2ifg_A High affinity nerve gro 98.3 5.2E-06 1.8E-10 70.9 10.2 88 101-192 20-112 (347)
146 2ifg_A High affinity nerve gro 98.2 4.8E-06 1.6E-10 71.1 9.9 104 29-149 11-116 (347)
147 2ra8_A Uncharacterized protein 98.0 1.1E-05 3.9E-10 69.3 7.3 12 230-241 307-318 (362)
148 2ra8_A Uncharacterized protein 97.8 1.2E-05 4.1E-10 69.2 4.0 164 45-222 135-321 (362)
149 3un9_A NLR family member X1; l 97.7 2.9E-06 9.8E-11 73.5 -1.7 128 89-222 101-253 (372)
150 3un9_A NLR family member X1; l 97.5 5.5E-06 1.9E-10 71.7 -2.6 104 89-198 126-253 (372)
151 4fs7_A Uncharacterized protein 97.5 0.0095 3.3E-07 51.5 17.9 193 26-239 162-375 (394)
152 4gt6_A Cell surface protein; l 97.3 0.038 1.3E-06 47.6 19.6 97 136-241 265-368 (394)
153 4gt6_A Cell surface protein; l 97.1 0.048 1.7E-06 47.0 18.0 76 156-238 260-342 (394)
154 3rw6_A Nuclear RNA export fact 96.9 0.0008 2.7E-08 55.1 4.5 78 88-167 169-257 (267)
155 4fs7_A Uncharacterized protein 96.8 0.074 2.5E-06 45.8 16.9 54 181-238 295-351 (394)
156 4h09_A Hypothetical leucine ri 96.8 0.1 3.5E-06 44.6 16.9 21 14-35 101-122 (379)
157 4h09_A Hypothetical leucine ri 96.4 0.4 1.4E-05 40.8 19.6 32 183-215 286-318 (379)
158 1io0_A Tropomodulin; LRR prote 95.8 0.001 3.4E-08 51.4 -1.0 14 46-60 33-46 (185)
159 1io0_A Tropomodulin; LRR prote 95.6 0.0081 2.8E-07 46.1 3.4 37 204-241 118-162 (185)
160 3rw6_A Nuclear RNA export fact 95.3 0.014 4.9E-07 47.7 4.2 56 159-218 168-231 (267)
161 3rfe_A Platelet glycoprotein I 95.0 0.05 1.7E-06 39.1 5.7 45 173-218 18-66 (130)
162 3rfe_A Platelet glycoprotein I 91.4 0.42 1.4E-05 34.1 5.8 36 134-170 29-64 (130)
163 1pgv_A TMD-1, tropomodulin TMD 66.2 5.3 0.00018 30.7 3.6 34 183-217 98-136 (197)
164 1pgv_A TMD-1, tropomodulin TMD 57.3 6.7 0.00023 30.1 2.7 9 184-192 127-135 (197)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=6.2e-20 Score=157.26 Aligned_cols=155 Identities=26% Similarity=0.355 Sum_probs=84.1
Q ss_pred cCCCCCCCCCCccEEEeccCcccccccccCcC---------CCCccEEeecCCcCCcccCCC-CCCCCcCeEEecCCCCc
Q 023528 80 SFPEGGLPSTKLTRLTIWKCKNLKALPNCIHN---------LTSLLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLKIS 149 (281)
Q Consensus 80 ~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~---------l~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~~ 149 (281)
.+|..+..+++|++|++++|...+.+|..+.. +++|++|+++++ .++.+|.. ..+++|+.|++++|. +
T Consensus 141 ~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~-l 218 (328)
T 4fcg_A 141 ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSP-L 218 (328)
T ss_dssp CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSC-C
T ss_pred cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCC-C
Confidence 34444444556666666666555555554433 666666666653 33344432 445566666666533 3
Q ss_pred cccchhhhccCCCcceEEeecCCCCCccCCC---CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccC-
Q 023528 150 KPLFEWGLDRFACLRELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSK- 225 (281)
Q Consensus 150 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~- 225 (281)
+.++. .+..+++|++|++++ |.....+|. ..++|+.|++++|+..+.+|..+..+++|++|++++|..++.+|.
T Consensus 219 ~~l~~-~l~~l~~L~~L~Ls~-n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 219 SALGP-AIHHLPKLEELDLRG-CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp CCCCG-GGGGCTTCCEEECTT-CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred CcCch-hhccCCCCCEEECcC-CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence 33333 355566666666666 555555444 344566666666555556654445666666666666666665554
Q ss_pred CCCCCCCcEEecC
Q 023528 226 QGLPKSLLRLGID 238 (281)
Q Consensus 226 ~~~~~~L~~L~l~ 238 (281)
.+.+++|+.+++.
T Consensus 297 l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 297 IAQLPANCIILVP 309 (328)
T ss_dssp GGGSCTTCEEECC
T ss_pred HhhccCceEEeCC
Confidence 2224555555543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.84 E-value=1.1e-20 Score=179.34 Aligned_cols=128 Identities=15% Similarity=-0.004 Sum_probs=62.7
Q ss_pred CCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC---CCCCccEEeccCCCCCccccccCCCCCCcCEE
Q 023528 136 TNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLKCLSSVGENLTSLETL 212 (281)
Q Consensus 136 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L 212 (281)
++|+.|++++|.....+|. .++.+++|+.|++++ +.-...+|. ..++|+.|++++++--+.+|..++.+++|++|
T Consensus 632 ~~L~~LdLs~N~l~g~ip~-~l~~l~~L~~L~Ls~-N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 709 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPK-EIGSMPYLFILNLGH-NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709 (768)
T ss_dssp BCCCEEECCSSCCBSCCCG-GGGGCTTCCEEECCS-SCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred ccccEEECcCCcccccCCH-HHhccccCCEEeCcC-CccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence 4555666666444344443 456666666666666 433345554 34566667776643334566444666667777
Q ss_pred eccCCCCcccccCCCCCCCCcEEecCCCchHHH----HHhhcCCCCCcccccccccccccEEE
Q 023528 213 DLSNCPKLKYFSKQGLPKSLLRLGIDDCPLMEK----RWIKADYPYTFATRYWPMITHIPCVI 271 (281)
Q Consensus 213 ~l~~c~~l~~i~~~~~~~~L~~L~l~~c~~l~~----~~~~~~~~~~~~~~~~~~~~~l~~~~ 271 (281)
++++|...+.+|..+.+.++....+.+++.+.. .|....+ ++|++++|++.+.
T Consensus 710 ~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~------~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 710 DLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNA------DGYAHHQRSHHHH 766 (768)
T ss_dssp ECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC--------------------
T ss_pred ECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCcc------CCCCCCCCccccC
Confidence 777655555566554444555555555543322 3455555 8899999998864
No 3
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=1.7e-19 Score=154.60 Aligned_cols=198 Identities=23% Similarity=0.291 Sum_probs=163.0
Q ss_pred CcCceeeccCCcCcccccc-CCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCccccc
Q 023528 26 ATLEHLEVTHCSNLAFLSW-NGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKA 104 (281)
Q Consensus 26 ~~L~~L~l~~~~~l~~l~~-~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~ 104 (281)
+.++.|+++++. +..+|. ++.+++ |++|+++++. +..+|..+..+++|++|++++| .+..
T Consensus 81 ~~l~~L~L~~n~-l~~lp~~l~~l~~-L~~L~L~~n~----------------l~~lp~~~~~l~~L~~L~Ls~n-~l~~ 141 (328)
T 4fcg_A 81 PGRVALELRSVP-LPQFPDQAFRLSH-LQHMTIDAAG----------------LMELPDTMQQFAGLETLTLARN-PLRA 141 (328)
T ss_dssp TTCCEEEEESSC-CSSCCSCGGGGTT-CSEEEEESSC----------------CCCCCSCGGGGTTCSEEEEESC-CCCC
T ss_pred cceeEEEccCCC-chhcChhhhhCCC-CCEEECCCCC----------------ccchhHHHhccCCCCEEECCCC-cccc
Confidence 589999999877 667776 777888 9999998854 3355666667889999999996 4568
Q ss_pred ccccCcCCCCccEEeecCCcCCcccCCCC----------CCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCC
Q 023528 105 LPNCIHNLTSLLHLEIRECRSLVSFPEDG----------FPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPD 174 (281)
Q Consensus 105 lp~~~~~l~~L~~L~l~~~~~l~~l~~~~----------~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 174 (281)
+|..+..+++|++|++++|...+.+|... .+++|+.|++++| .++.++. .+..+++|++|++++ +.
T Consensus 142 lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~-~l~~l~~L~~L~L~~--N~ 217 (328)
T 4fcg_A 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPA-SIANLQNLKSLKIRN--SP 217 (328)
T ss_dssp CCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCG-GGGGCTTCCEEEEES--SC
T ss_pred CcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchH-hhcCCCCCCEEEccC--CC
Confidence 89999999999999999988888887642 2899999999995 4557765 588999999999998 45
Q ss_pred CccCCC---CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCC-CCCCCCcEEecCCCchHHHH
Q 023528 175 LVSSPR---FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQ-GLPKSLLRLGIDDCPLMEKR 246 (281)
Q Consensus 175 ~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~-~~~~~L~~L~l~~c~~l~~~ 246 (281)
+..++. ..++|+.|++++|+..+.+|..++.+++|++|++++|...+.+|.. +.+++|++|++++|+.+...
T Consensus 218 l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i 293 (328)
T 4fcg_A 218 LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293 (328)
T ss_dssp CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred CCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence 666665 5679999999998888888865689999999999999988888863 34789999999999876554
No 4
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.81 E-value=1.1e-18 Score=150.26 Aligned_cols=224 Identities=17% Similarity=0.159 Sum_probs=107.3
Q ss_pred ccceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccc--------eeec
Q 023528 2 KQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER--------IWIF 73 (281)
Q Consensus 2 ~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~--------L~l~ 73 (281)
++++.+.++++. +..+ +.....++|++|++++|. +..++.+..+++ |++|++++|. +..++.. ++++
T Consensus 44 ~~L~~L~l~~~~-i~~~-~~~~~~~~L~~L~l~~n~-i~~~~~~~~l~~-L~~L~L~~n~-i~~~~~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 44 ESITKLVVAGEK-VASI-QGIEYLTNLEYLNLNGNQ-ITDISPLSNLVK-LTNLYIGTNK-ITDISALQNLTNLRELYLN 118 (347)
T ss_dssp TTCSEEECCSSC-CCCC-TTGGGCTTCCEEECCSSC-CCCCGGGTTCTT-CCEEECCSSC-CCCCGGGTTCTTCSEEECT
T ss_pred ccccEEEEeCCc-cccc-hhhhhcCCccEEEccCCc-cccchhhhcCCc-CCEEEccCCc-ccCchHHcCCCcCCEEECc
Confidence 345555555532 4444 222223466666666553 444444555555 6666665542 2222211 4444
Q ss_pred CCCCCccCCCCCCCCCCccEEEeccCcccccccc---------------------cCcCCCCccEEeecCCcCCcccCCC
Q 023528 74 GCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPN---------------------CIHNLTSLLHLEIRECRSLVSFPED 132 (281)
Q Consensus 74 ~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~---------------------~~~~l~~L~~L~l~~~~~l~~l~~~ 132 (281)
++. +..++. ...+++|++|++++|.....++. .+..+++|++|+++++ .+..++..
T Consensus 119 ~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~ 195 (347)
T 4fmz_A 119 EDN-ISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYN-QIEDISPL 195 (347)
T ss_dssp TSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTS-CCCCCGGG
T ss_pred CCc-ccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCC-cccccccc
Confidence 332 222222 33344555555555433333221 1334444444444442 22222222
Q ss_pred CCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC--CCCCccEEeccCCCCCccccccCCCCCCcC
Q 023528 133 GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR--FPASLTQLGISDMPTLKCLSSVGENLTSLE 210 (281)
Q Consensus 133 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~ 210 (281)
..+++|+.+++++|. +...+ .+..+++|++|++++ | .+..++. ..++|++|++++| .++.++ .+..+++|+
T Consensus 196 ~~l~~L~~L~l~~n~-l~~~~--~~~~~~~L~~L~l~~-n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~ 268 (347)
T 4fmz_A 196 ASLTSLHYFTAYVNQ-ITDIT--PVANMTRLNSLKIGN-N-KITDLSPLANLSQLTWLEIGTN-QISDIN-AVKDLTKLK 268 (347)
T ss_dssp GGCTTCCEEECCSSC-CCCCG--GGGGCTTCCEEECCS-S-CCCCCGGGTTCTTCCEEECCSS-CCCCCG-GGTTCTTCC
T ss_pred cCCCccceeecccCC-CCCCc--hhhcCCcCCEEEccC-C-ccCCCcchhcCCCCCEEECCCC-ccCCCh-hHhcCCCcC
Confidence 334444455444422 22222 145566666666665 3 3333332 4456777777763 555554 346666777
Q ss_pred EEeccCCCCcccccCCCCCCCCcEEecCCCc
Q 023528 211 TLDLSNCPKLKYFSKQGLPKSLLRLGIDDCP 241 (281)
Q Consensus 211 ~L~l~~c~~l~~i~~~~~~~~L~~L~l~~c~ 241 (281)
+|++++| .++.++....+++|++|++++|.
T Consensus 269 ~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~ 298 (347)
T 4fmz_A 269 MLNVGSN-QISDISVLNNLSQLNSLFLNNNQ 298 (347)
T ss_dssp EEECCSS-CCCCCGGGGGCTTCSEEECCSSC
T ss_pred EEEccCC-ccCCChhhcCCCCCCEEECcCCc
Confidence 7777774 45555443335667777777765
No 5
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.79 E-value=4.5e-18 Score=139.05 Aligned_cols=208 Identities=16% Similarity=0.176 Sum_probs=161.8
Q ss_pred CCCCcccCCCCCccCcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCC
Q 023528 12 STSRTPFSSENELPATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPST 89 (281)
Q Consensus 12 ~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~ 89 (281)
|.+++.+ |. ++++|++|+++++. ++.++. ++.+++ |++|+++++..++.++. ..+..++
T Consensus 20 c~~l~~i-p~--~~~~l~~L~l~~n~-l~~i~~~~~~~l~~-L~~L~l~~n~~l~~i~~--------------~~f~~l~ 80 (239)
T 2xwt_C 20 CKDIQRI-PS--LPPSTQTLKLIETH-LRTIPSHAFSNLPN-ISRIYVSIDVTLQQLES--------------HSFYNLS 80 (239)
T ss_dssp ECSCSSC-CC--CCTTCCEEEEESCC-CSEECTTTTTTCTT-CCEEEEECCSSCCEECT--------------TTEESCT
T ss_pred ccCcccc-CC--CCCcccEEEEeCCc-ceEECHHHccCCCC-CcEEeCCCCCCcceeCH--------------hHcCCCc
Confidence 6668888 54 77799999999887 777765 788999 99999988653444332 1233467
Q ss_pred CccEEEeccCccccccc-ccCcCCCCccEEeecCCcCCcccCCCCCCCCcC---eEEecCCCCccccchhhhccCCCcc-
Q 023528 90 KLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQ---SLVVDDLKISKPLFEWGLDRFACLR- 164 (281)
Q Consensus 90 ~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~---~L~l~~~~~~~~~~~~~~~~l~~L~- 164 (281)
+|++|++++|..++.+| ..+..+++|++|+++++ .++.+|....+++|+ .|++++|..++.++...+..+++|+
T Consensus 81 ~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n-~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~ 159 (239)
T 2xwt_C 81 KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETL 159 (239)
T ss_dssp TCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE-CCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEE
T ss_pred CCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC-CCccccccccccccccccEEECCCCcchhhcCcccccchhccee
Confidence 99999999866777776 46788999999999985 566677766777887 9999997678788776789999999
Q ss_pred eEEeecCCCCCccCCC---CCCCccEEeccCCCCCccccccC-CCC-CCcCEEeccCCCCcccccCCCCCCCCcEEecCC
Q 023528 165 ELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLKCLSSVG-ENL-TSLETLDLSNCPKLKYFSKQGLPKSLLRLGIDD 239 (281)
Q Consensus 165 ~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~-~~l-~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~l~~ 239 (281)
+|++++ +.++.++. ..++|+.|+++++..++.++... ..+ ++|++|++++ +.++.+|.. .+++|++|++.+
T Consensus 160 ~L~l~~--n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~~L~l~~ 235 (239)
T 2xwt_C 160 TLKLYN--NGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEHLKELIARN 235 (239)
T ss_dssp EEECCS--CCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT-TCTTCSEEECTT
T ss_pred EEEcCC--CCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh-HhccCceeeccC
Confidence 999998 56667765 23689999999954588887555 788 9999999999 577888765 468999999998
Q ss_pred CchH
Q 023528 240 CPLM 243 (281)
Q Consensus 240 c~~l 243 (281)
+..+
T Consensus 236 ~~~l 239 (239)
T 2xwt_C 236 TWTL 239 (239)
T ss_dssp C---
T ss_pred ccCC
Confidence 7653
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.79 E-value=4.6e-18 Score=152.74 Aligned_cols=81 Identities=22% Similarity=0.247 Sum_probs=35.1
Q ss_pred hccCCCcceEEeecCCCCCccCCC---CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCCCC--CC
Q 023528 157 LDRFACLRELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQGL--PK 230 (281)
Q Consensus 157 ~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~~~--~~ 230 (281)
+..+++|+.|++++ +.....++. ...+|+.|++++ +.++.+|... ..+++|++|++++| .+..++...+ ++
T Consensus 196 ~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~ 272 (477)
T 2id5_A 196 FKRLYRLKVLEISH-WPYLDTMTPNCLYGLNLTSLSITH-CNLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELL 272 (477)
T ss_dssp SCSCTTCCEEEEEC-CTTCCEECTTTTTTCCCSEEEEES-SCCCSCCHHHHTTCTTCCEEECCSS-CCCEECTTSCTTCT
T ss_pred cccCcccceeeCCC-CccccccCcccccCccccEEECcC-CcccccCHHHhcCccccCeeECCCC-cCCccChhhccccc
Confidence 44444555555554 433333332 122455555555 2444444222 45555555555553 2333333111 34
Q ss_pred CCcEEecCCC
Q 023528 231 SLLRLGIDDC 240 (281)
Q Consensus 231 ~L~~L~l~~c 240 (281)
+|++|++.++
T Consensus 273 ~L~~L~L~~n 282 (477)
T 2id5_A 273 RLQEIQLVGG 282 (477)
T ss_dssp TCCEEECCSS
T ss_pred cCCEEECCCC
Confidence 4444444443
No 7
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.79 E-value=2.2e-18 Score=148.42 Aligned_cols=250 Identities=18% Similarity=0.137 Sum_probs=158.1
Q ss_pred CccceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccc--------eee
Q 023528 1 MKQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER--------IWI 72 (281)
Q Consensus 1 ~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~--------L~l 72 (281)
+++++.|+++++ .++.+++. ...++|++|++++|. +..++.++.+++ |++|+++++. +..++.. +++
T Consensus 65 ~~~L~~L~l~~n-~i~~~~~~-~~l~~L~~L~L~~n~-i~~~~~~~~l~~-L~~L~l~~n~-i~~~~~~~~l~~L~~L~l 139 (347)
T 4fmz_A 65 LTNLEYLNLNGN-QITDISPL-SNLVKLTNLYIGTNK-ITDISALQNLTN-LRELYLNEDN-ISDISPLANLTKMYSLNL 139 (347)
T ss_dssp CTTCCEEECCSS-CCCCCGGG-TTCTTCCEEECCSSC-CCCCGGGTTCTT-CSEEECTTSC-CCCCGGGTTCTTCCEEEC
T ss_pred cCCccEEEccCC-ccccchhh-hcCCcCCEEEccCCc-ccCchHHcCCCc-CCEEECcCCc-ccCchhhccCCceeEEEC
Confidence 356677777765 35555332 222477777777664 555565666666 6666666654 2222111 444
Q ss_pred cCCCCCccCCC---------------------CCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCC
Q 023528 73 FGCPNLESFPE---------------------GGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPE 131 (281)
Q Consensus 73 ~~~~~l~~l~~---------------------~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~ 131 (281)
++|.....++. ....+++|++|++++| .+..++. +..+++|+.++++++ .+..++.
T Consensus 140 ~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~ 216 (347)
T 4fmz_A 140 GANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYN-QIEDISP-LASLTSLHYFTAYVN-QITDITP 216 (347)
T ss_dssp TTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCGG
T ss_pred CCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCC-ccccccc-ccCCCccceeecccC-CCCCCch
Confidence 44332222211 0334667888888875 3445543 778899999999985 4545444
Q ss_pred CCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC--CCCCccEEeccCCCCCccccccCCCCCCc
Q 023528 132 DGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR--FPASLTQLGISDMPTLKCLSSVGENLTSL 209 (281)
Q Consensus 132 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~~~~~~l~~L 209 (281)
...+++|++|++++|. ++..+. +..+++|++|++++ + .++.++. .+++|+.|++++| .++.++ .+..+++|
T Consensus 217 ~~~~~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~-n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L 289 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNK-ITDLSP--LANLSQLTWLEIGT-N-QISDINAVKDLTKLKMLNVGSN-QISDIS-VLNNLSQL 289 (347)
T ss_dssp GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCS-S-CCCCCGGGTTCTTCCEEECCSS-CCCCCG-GGGGCTTC
T ss_pred hhcCCcCCEEEccCCc-cCCCcc--hhcCCCCCEEECCC-C-ccCCChhHhcCCCcCEEEccCC-ccCCCh-hhcCCCCC
Confidence 5677899999999854 445543 78899999999998 4 5555554 5679999999994 777775 45788999
Q ss_pred CEEeccCCCCcccccC--CCCCCCCcEEecCCCchHHHHHhhcCCCCCcccccccccccccEEEECCEEeee
Q 023528 210 ETLDLSNCPKLKYFSK--QGLPKSLLRLGIDDCPLMEKRWIKADYPYTFATRYWPMITHIPCVIVNGRFVFE 279 (281)
Q Consensus 210 ~~L~l~~c~~l~~i~~--~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 279 (281)
++|++++|. +...+. .+.+++|++|++++|+.-. . .....+.++..+.+.|+.+++
T Consensus 290 ~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~-~------------~~~~~l~~L~~L~l~~N~i~~ 347 (347)
T 4fmz_A 290 NSLFLNNNQ-LGNEDMEVIGGLTNLTTLFLSQNHITD-I------------RPLASLSKMDSADFANQVIKK 347 (347)
T ss_dssp SEEECCSSC-CCGGGHHHHHTCTTCSEEECCSSSCCC-C------------GGGGGCTTCSEESSSCC----
T ss_pred CEEECcCCc-CCCcChhHhhccccCCEEEccCCcccc-c------------cChhhhhccceeehhhhcccC
Confidence 999999974 444332 2236889999999987321 1 113446677777777776653
No 8
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.78 E-value=1.3e-17 Score=142.79 Aligned_cols=172 Identities=11% Similarity=0.114 Sum_probs=103.6
Q ss_pred CCCccEEEeccCccc--ccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcce
Q 023528 88 STKLTRLTIWKCKNL--KALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRE 165 (281)
Q Consensus 88 ~~~L~~L~l~~c~~l--~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 165 (281)
+++|++|++++|..- ...+..+..+++|++|+++++ .++.+|.. ..++|+.|++++|. ++..+...+..+++|++
T Consensus 144 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~-~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~ 220 (330)
T 1xku_A 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQG-LPPSLTELHLDGNK-ITKVDAASLKGLNNLAK 220 (330)
T ss_dssp CTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSS-CCTTCSEEECTTSC-CCEECTGGGTTCTTCCE
T ss_pred CccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCcc-ccccCCEEECCCCc-CCccCHHHhcCCCCCCE
Confidence 455555555554321 122344556666666666653 34444433 23678888888754 44444446778888888
Q ss_pred EEeecCCCCCccCCC----CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCCCC--------CCCCc
Q 023528 166 LRIRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGL--------PKSLL 233 (281)
Q Consensus 166 L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~~~--------~~~L~ 233 (281)
|++++ +.+..++. ..++|+.|++++ +.++.+|..+..+++|++|++++| .++.++...+ ..+++
T Consensus 221 L~Ls~--n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~ 296 (330)
T 1xku_A 221 LGLSF--NSISAVDNGSLANTPHLRELHLNN-NKLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYS 296 (330)
T ss_dssp EECCS--SCCCEECTTTGGGSTTCCEEECCS-SCCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCS
T ss_pred EECCC--CcCceeChhhccCCCCCCEEECCC-CcCccCChhhccCCCcCEEECCCC-cCCccChhhcCCccccccccccc
Confidence 88887 34444432 456888889888 477788855578888889999884 5777665332 25678
Q ss_pred EEecCCCchHHHHHhhcCCCCCcccccccccccccEEEECCE
Q 023528 234 RLGIDDCPLMEKRWIKADYPYTFATRYWPMITHIPCVIVNGR 275 (281)
Q Consensus 234 ~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 275 (281)
.+++.+++....... + ..+.....+..+.+.++
T Consensus 297 ~l~l~~N~~~~~~i~-~--------~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 297 GVSLFSNPVQYWEIQ-P--------STFRCVYVRAAVQLGNY 329 (330)
T ss_dssp EEECCSSSSCGGGSC-G--------GGGTTCCCGGGEEC---
T ss_pred ceEeecCcccccccC-c--------cccccccceeEEEeccc
Confidence 888888774221111 1 23455666666666554
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.78 E-value=2.5e-18 Score=163.08 Aligned_cols=166 Identities=15% Similarity=0.052 Sum_probs=71.9
Q ss_pred cceeecccCCCCCcccCCCCCc--cCcCceeeccCCcCcccccc-CCCcCCcCcEEEecCCcchhccccc---------e
Q 023528 3 QDISRSSSGSTSRTPFSSENEL--PATLEHLEVTHCSNLAFLSW-NGNLPRALKYLYVKDCSKLESLAER---------I 70 (281)
Q Consensus 3 ~l~~l~~~~~~~l~~~~~~~~~--~~~L~~L~l~~~~~l~~l~~-~~~l~~~L~~L~l~~~~~l~~~p~~---------L 70 (281)
+++.|+++++.--..+|+.... .++|++|++++|.....+|. ++.+++ |++|++++|...+.+|.. +
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 447 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE-LVSLHLSFNYLSGTIPSSLGSLSKLRDL 447 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTT-CCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCC-CCEEECcCCcccCcccHHHhcCCCCCEE
Confidence 4556666654422233222222 24566666665542223332 444555 555555555433233222 4
Q ss_pred eecCCCCCccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC-CCCCCcCeEEecCCCCc
Q 023528 71 WIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLKIS 149 (281)
Q Consensus 71 ~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~~ 149 (281)
+++++.....+|..+..+++|++|++++|...+.+|..+..+++|++|+++++.....+|.. +.+++|+.|++++|...
T Consensus 448 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 527 (768)
T 3rgz_A 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred ECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCccc
Confidence 44444333344444444445555555554433344444444455555555443333233322 33444444444443333
Q ss_pred cccchhhhccCCCcceEEeec
Q 023528 150 KPLFEWGLDRFACLRELRIRG 170 (281)
Q Consensus 150 ~~~~~~~~~~l~~L~~L~l~~ 170 (281)
..+|. .+..+++|+.|++++
T Consensus 528 ~~~p~-~l~~l~~L~~L~Ls~ 547 (768)
T 3rgz_A 528 GNIPA-ELGDCRSLIWLDLNT 547 (768)
T ss_dssp EECCG-GGGGCTTCCEEECCS
T ss_pred CcCCH-HHcCCCCCCEEECCC
Confidence 33332 344444444444443
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.78 E-value=1.9e-17 Score=148.73 Aligned_cols=148 Identities=19% Similarity=0.194 Sum_probs=63.4
Q ss_pred CCCCCccEEEeccCccccccc-ccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCC
Q 023528 86 LPSTKLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFAC 162 (281)
Q Consensus 86 ~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 162 (281)
..+++|++|++++| .+..+| ..+..+++|+.|++.++ .+..++.. ..+++|+.|++++|.....++.. .....+
T Consensus 149 ~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~ 225 (477)
T 2id5_A 149 SGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN-CLYGLN 225 (477)
T ss_dssp TTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESC-CCCEECTTCSCSCTTCCEEEEECCTTCCEECTT-TTTTCC
T ss_pred cCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCC-cCcEeChhhcccCcccceeeCCCCccccccCcc-cccCcc
Confidence 33445555555543 222222 22344444444444442 22222221 34456666666655544444332 222235
Q ss_pred cceEEeecCCCCCccCCC----CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCCC--CCCCCcEE
Q 023528 163 LRELRIRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQG--LPKSLLRL 235 (281)
Q Consensus 163 L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~~--~~~~L~~L 235 (281)
|+.|++++ +.++.++. ..++|+.|++++ +.++.++... ..+++|++|++++| .+..+.... .+++|++|
T Consensus 226 L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 301 (477)
T 2id5_A 226 LTSLSITH--CNLTAVPYLAVRHLVYLRFLNLSY-NPISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVL 301 (477)
T ss_dssp CSEEEEES--SCCCSCCHHHHTTCTTCCEEECCS-SCCCEECTTSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEE
T ss_pred ccEEECcC--CcccccCHHHhcCccccCeeECCC-CcCCccChhhccccccCCEEECCCC-ccceECHHHhcCcccCCEE
Confidence 55555555 23334432 334555555555 3344443332 44455555555553 233332211 13445555
Q ss_pred ecCCC
Q 023528 236 GIDDC 240 (281)
Q Consensus 236 ~l~~c 240 (281)
+++++
T Consensus 302 ~L~~N 306 (477)
T 2id5_A 302 NVSGN 306 (477)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 55444
No 11
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.77 E-value=8.8e-19 Score=149.13 Aligned_cols=234 Identities=13% Similarity=0.054 Sum_probs=121.4
Q ss_pred cceeecccCCCCCc--ccCCCCCccCcCceeeccCCcCcc-cccc-CCCcCCcCcEEEecCCcchhccccc---------
Q 023528 3 QDISRSSSGSTSRT--PFSSENELPATLEHLEVTHCSNLA-FLSW-NGNLPRALKYLYVKDCSKLESLAER--------- 69 (281)
Q Consensus 3 ~l~~l~~~~~~~l~--~~~~~~~~~~~L~~L~l~~~~~l~-~l~~-~~~l~~~L~~L~l~~~~~l~~~p~~--------- 69 (281)
+++.|+++++.--. .+|+...-.++|++|+++++..+. .+|. ++.+++ |++|+++++...+.+|..
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~-L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ-LHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTT-CSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCC-CCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 46666776644222 342222222577777777533233 4443 666777 777777776543344432
Q ss_pred eeecCCCCCccCCCCCCCCCCccEEEeccCcccccccccCcCCC-CccEEeecCCcCCcccCCC-CCCCCcCeEEecCCC
Q 023528 70 IWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLT-SLLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLK 147 (281)
Q Consensus 70 L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~-~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~ 147 (281)
++++++.....+|..+..+++|++|++++|.....+|..+..++ .|++|+++++.....+|.. ..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 55555433334455555556666666666543335555555555 6666666654322233322 2222 6666666643
Q ss_pred CccccchhhhccCCCcceEEeecCCCCCccCCC--CCCCccEEeccCCCCCc-cccccCCCCCCcCEEeccCCCCccccc
Q 023528 148 ISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR--FPASLTQLGISDMPTLK-CLSSVGENLTSLETLDLSNCPKLKYFS 224 (281)
Q Consensus 148 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~-~l~~~~~~l~~L~~L~l~~c~~l~~i~ 224 (281)
++......+..+++|+.|++++ +.-...++. ..++|++|+++++ .+. .+|..+..+++|++|++++|.-.+.+|
T Consensus 209 -l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 285 (313)
T 1ogq_A 209 -LEGDASVLFGSDKNTQKIHLAK-NSLAFDLGKVGLSKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp -EEECCGGGCCTTSCCSEEECCS-SEECCBGGGCCCCTTCCEEECCSS-CCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred -ccCcCCHHHhcCCCCCEEECCC-CceeeecCcccccCCCCEEECcCC-cccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence 2222223455666666666665 322222222 3456666666663 343 555333666666666666654333555
Q ss_pred CCCCCCCCcEEecCCCc
Q 023528 225 KQGLPKSLLRLGIDDCP 241 (281)
Q Consensus 225 ~~~~~~~L~~L~l~~c~ 241 (281)
..+.+++|+.+++.+++
T Consensus 286 ~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 286 QGGNLQRFDVSAYANNK 302 (313)
T ss_dssp CSTTGGGSCGGGTCSSS
T ss_pred CCccccccChHHhcCCC
Confidence 54445566666666555
No 12
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=8.3e-17 Score=143.67 Aligned_cols=215 Identities=19% Similarity=0.246 Sum_probs=123.7
Q ss_pred CCCcccCCCCCccCcCceeeccCCcCccccc--cCCCcCCcCcEEEecCCcchhccccc----------eeecCCCCCcc
Q 023528 13 TSRTPFSSENELPATLEHLEVTHCSNLAFLS--WNGNLPRALKYLYVKDCSKLESLAER----------IWIFGCPNLES 80 (281)
Q Consensus 13 ~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~l~~~L~~L~l~~~~~l~~~p~~----------L~l~~~~~l~~ 80 (281)
.+++.+ |. .+++++++|+++++. +..++ .++.+++ |++|+++++. +..++.. |+++++. +..
T Consensus 64 ~~l~~i-P~-~~~~~l~~L~L~~n~-i~~~~~~~~~~l~~-L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~ 137 (452)
T 3zyi_A 64 RGLSEV-PQ-GIPSNTRYLNLMENN-IQMIQADTFRHLHH-LEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNW-LTV 137 (452)
T ss_dssp SCCSSC-CS-CCCTTCSEEECCSSC-CCEECTTTTTTCTT-CCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CSB
T ss_pred CCcCcc-CC-CCCCCccEEECcCCc-CceECHHHcCCCCC-CCEEECCCCc-cCCcChhhccCcccCCEEECCCCc-CCc
Confidence 456777 53 355799999999886 66553 3788999 9999999875 3333211 5555542 344
Q ss_pred CCCC-CCCCCCccEEEeccCccccccc-ccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhh
Q 023528 81 FPEG-GLPSTKLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWG 156 (281)
Q Consensus 81 l~~~-~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~ 156 (281)
++.. +..+++|++|++++|. +..+| ..+..+++|++|+++++..+..++.. ..+++|+.|++++| .++.++ .
T Consensus 138 ~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~--~ 213 (452)
T 3zyi_A 138 IPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMP--N 213 (452)
T ss_dssp CCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCC--C
T ss_pred cChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccc--c
Confidence 4433 3445666666666643 33443 34556666666666665555555543 34566666666663 333444 3
Q ss_pred hccCCCcceEEeecCCCCCccCCC----CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCCCC--C
Q 023528 157 LDRFACLRELRIRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQGL--P 229 (281)
Q Consensus 157 ~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~~~--~ 229 (281)
+..+++|++|++++ +.+..++. ..++|+.|++++ +.+..++... ..+++|++|++++| +++.++...+ +
T Consensus 214 ~~~l~~L~~L~Ls~--N~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l 289 (452)
T 3zyi_A 214 LTPLVGLEELEMSG--NHFPEIRPGSFHGLSSLKKLWVMN-SQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPL 289 (452)
T ss_dssp CTTCTTCCEEECTT--SCCSEECGGGGTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTC
T ss_pred ccccccccEEECcC--CcCcccCcccccCccCCCEEEeCC-CcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccc
Confidence 55566666666665 33333321 344666666666 3455443333 56666666666663 4555554322 4
Q ss_pred CCCcEEecCCCc
Q 023528 230 KSLLRLGIDDCP 241 (281)
Q Consensus 230 ~~L~~L~l~~c~ 241 (281)
++|++|++.+++
T Consensus 290 ~~L~~L~L~~Np 301 (452)
T 3zyi_A 290 RYLVELHLHHNP 301 (452)
T ss_dssp TTCCEEECCSSC
T ss_pred cCCCEEEccCCC
Confidence 566666666543
No 13
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.76 E-value=5.5e-17 Score=142.04 Aligned_cols=99 Identities=22% Similarity=0.177 Sum_probs=47.3
Q ss_pred CCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccC-CC---CCCCccEEeccCCCCCccccccCCCCCCcCE
Q 023528 136 TNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSS-PR---FPASLTQLGISDMPTLKCLSSVGENLTSLET 211 (281)
Q Consensus 136 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~---~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~ 211 (281)
++|+.|++++|. ++..+ .+..+++|++|++++ + .+..+ +. ..++|+.|++++ +.++.+|.....+++|++
T Consensus 226 ~~L~~L~l~~n~-l~~~~--~l~~l~~L~~L~Ls~-n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~l~~L~~ 299 (390)
T 3o6n_A 226 VELTILKLQHNN-LTDTA--WLLNYPGLVEVDLSY-N-ELEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKV 299 (390)
T ss_dssp SSCCEEECCSSC-CCCCG--GGGGCTTCSEEECCS-S-CCCEEESGGGTTCSSCCEEECCS-SCCCEEECSSSCCTTCCE
T ss_pred ccccEEECCCCC-CcccH--HHcCCCCccEEECCC-C-cCCCcChhHccccccCCEEECCC-CcCcccCcccCCCCCCCE
Confidence 345555555532 22222 355566666666665 3 33322 22 344566666665 345555533345555666
Q ss_pred EeccCCCCcccccCC-CCCCCCcEEecCCCc
Q 023528 212 LDLSNCPKLKYFSKQ-GLPKSLLRLGIDDCP 241 (281)
Q Consensus 212 L~l~~c~~l~~i~~~-~~~~~L~~L~l~~c~ 241 (281)
|++++| .+..++.. +.+++|++|++.+|+
T Consensus 300 L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 300 LDLSHN-HLLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp EECCSS-CCCCCGGGHHHHTTCSEEECCSSC
T ss_pred EECCCC-cceecCccccccCcCCEEECCCCc
Confidence 666554 34444331 113445555555443
No 14
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.76 E-value=6.9e-17 Score=144.02 Aligned_cols=58 Identities=29% Similarity=0.308 Sum_probs=26.0
Q ss_pred hhccCCCcceEEeecCCCCCccC-CC---CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccC
Q 023528 156 GLDRFACLRELRIRGGCPDLVSS-PR---FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSN 216 (281)
Q Consensus 156 ~~~~l~~L~~L~l~~~~~~~~~~-~~---~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~ 216 (281)
.+..+++|++|++++ + .+..+ +. ..++|+.|+++++ .++.++... +.+++|++|++++
T Consensus 294 ~~~~l~~L~~L~Ls~-n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~ 356 (455)
T 3v47_A 294 VFSHFTDLEQLTLAQ-N-EINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSY 356 (455)
T ss_dssp TTTTCTTCCEEECTT-S-CCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCS
T ss_pred hcccCCCCCEEECCC-C-cccccChhHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCC
Confidence 345555555555555 2 22222 11 2344555555552 344332222 4445555555555
No 15
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.75 E-value=3.5e-17 Score=140.23 Aligned_cols=247 Identities=14% Similarity=0.158 Sum_probs=144.9
Q ss_pred ceeecccCCCCCcccCCCCCccCcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhcc-ccc---------ee
Q 023528 4 DISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESL-AER---------IW 71 (281)
Q Consensus 4 l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~-p~~---------L~ 71 (281)
++.+.++++ .++.+ |.. ++++|++|+++++. +..++. ++.+++ |++|+++++. +..+ |.. ++
T Consensus 35 l~~l~~~~~-~l~~i-p~~-~~~~l~~L~l~~n~-i~~~~~~~~~~l~~-L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 35 LRVVQCSDL-GLKAV-PKE-ISPDTTLLDLQNND-ISELRKDDFKGLQH-LYALVLVNNK-ISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp TTEEECCSS-CCSSC-CSC-CCTTCCEEECCSSC-CCEECTTTTTTCTT-CCEEECCSSC-CCEECGGGSTTCTTCCEEE
T ss_pred CCEEECCCC-Ccccc-CCC-CCCCCeEEECCCCc-CCccCHhHhhCCCC-CcEEECCCCc-cCccCHhHhhCcCCCCEEE
Confidence 445555543 36666 433 34577777777765 555533 667777 7777777765 2222 221 66
Q ss_pred ecCCCCCccCCCCCCCCCCccEEEeccCcccccccc-cCcCCCCccEEeecCCcC------------------------C
Q 023528 72 IFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPN-CIHNLTSLLHLEIRECRS------------------------L 126 (281)
Q Consensus 72 l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~~------------------------l 126 (281)
++++ .+..+|.... ++|++|++++| .+..+|. .+..+++|++|+++++.. +
T Consensus 109 L~~n-~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l 184 (332)
T 2ft3_A 109 ISKN-HLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL 184 (332)
T ss_dssp CCSS-CCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBC
T ss_pred CCCC-cCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCC
Confidence 6554 3445555444 57777777774 3444443 356677777777766422 1
Q ss_pred cccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC----CCCCccEEeccCCCCCcccccc
Q 023528 127 VSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSV 202 (281)
Q Consensus 127 ~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~ 202 (281)
+.+|. ...++|+.|++++| .++..+...+..+++|++|++++ +.+..++. ..++|+.|++++ +.++.+|..
T Consensus 185 ~~l~~-~~~~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~--N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~lp~~ 259 (332)
T 2ft3_A 185 TGIPK-DLPETLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGH--NQIRMIENGSLSFLPTLRELHLDN-NKLSRVPAG 259 (332)
T ss_dssp SSCCS-SSCSSCSCCBCCSS-CCCCCCTTSSTTCTTCSCCBCCS--SCCCCCCTTGGGGCTTCCEEECCS-SCCCBCCTT
T ss_pred CccCc-cccCCCCEEECCCC-cCCccCHHHhcCCCCCCEEECCC--CcCCcCChhHhhCCCCCCEEECCC-CcCeecChh
Confidence 11221 12256777777764 34444434577788888888887 44555443 456888888888 577788855
Q ss_pred CCCCCCcCEEeccCCCCcccccCCCC--------CCCCcEEecCCCchHHHHHhhcCCCCCcccccccccccccEEEECC
Q 023528 203 GENLTSLETLDLSNCPKLKYFSKQGL--------PKSLLRLGIDDCPLMEKRWIKADYPYTFATRYWPMITHIPCVIVNG 274 (281)
Q Consensus 203 ~~~l~~L~~L~l~~c~~l~~i~~~~~--------~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 274 (281)
+..+++|++|+++++ .++.++...+ ...|+.|++.+++........ ..+..+.++..+.+.+
T Consensus 260 l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~---------~~~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 260 LPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP---------ATFRCVTDRLAIQFGN 329 (332)
T ss_dssp GGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG---------GGGTTBCCSTTEEC--
T ss_pred hhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCc---------ccccccchhhhhhccc
Confidence 578888888888884 5666665322 346788888887742111111 2244456666666655
Q ss_pred E
Q 023528 275 R 275 (281)
Q Consensus 275 ~ 275 (281)
+
T Consensus 330 n 330 (332)
T 2ft3_A 330 Y 330 (332)
T ss_dssp -
T ss_pred c
Confidence 4
No 16
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=1.7e-16 Score=141.18 Aligned_cols=215 Identities=17% Similarity=0.242 Sum_probs=161.5
Q ss_pred CCCcccCCCCCccCcCceeeccCCcCccccc--cCCCcCCcCcEEEecCCcchhccccc----------eeecCCCCCcc
Q 023528 13 TSRTPFSSENELPATLEHLEVTHCSNLAFLS--WNGNLPRALKYLYVKDCSKLESLAER----------IWIFGCPNLES 80 (281)
Q Consensus 13 ~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~l~~~L~~L~l~~~~~l~~~p~~----------L~l~~~~~l~~ 80 (281)
.+++.+ |. .++++++.|+++++. +..++ .++.+++ |++|+++++. +..++.. |+++++ .+..
T Consensus 53 ~~l~~i-P~-~~~~~l~~L~L~~n~-i~~~~~~~~~~l~~-L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n-~l~~ 126 (440)
T 3zyj_A 53 KNLREV-PD-GISTNTRLLNLHENQ-IQIIKVNSFKHLRH-LEILQLSRNH-IRTIEIGAFNGLANLNTLELFDN-RLTT 126 (440)
T ss_dssp CCCSSC-CS-CCCTTCSEEECCSCC-CCEECTTTTSSCSS-CCEEECCSSC-CCEECGGGGTTCSSCCEEECCSS-CCSS
T ss_pred CCcCcC-CC-CCCCCCcEEEccCCc-CCeeCHHHhhCCCC-CCEEECCCCc-CCccChhhccCCccCCEEECCCC-cCCe
Confidence 457777 54 345699999999877 66554 3788999 9999999875 4333321 777776 4566
Q ss_pred CCC-CCCCCCCccEEEeccCccccccc-ccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhh
Q 023528 81 FPE-GGLPSTKLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWG 156 (281)
Q Consensus 81 l~~-~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~ 156 (281)
++. .+..+++|++|++++|. +..+| ..+..+++|++|+++++..+..++.. ..+++|+.|++++| .++.++ .
T Consensus 127 ~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~--~ 202 (440)
T 3zyj_A 127 IPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIP--N 202 (440)
T ss_dssp CCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCC--C
T ss_pred eCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCcccc--c
Confidence 665 45668899999999964 55555 46788999999999988778777764 56789999999985 556666 4
Q ss_pred hccCCCcceEEeecCCCCCccCC-C---CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCCCC--C
Q 023528 157 LDRFACLRELRIRGGCPDLVSSP-R---FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQGL--P 229 (281)
Q Consensus 157 ~~~l~~L~~L~l~~~~~~~~~~~-~---~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~~~--~ 229 (281)
+..+++|++|++++ + .+..++ . ..++|+.|++++ +.++.++... ..+++|++|++++| +++.++...+ +
T Consensus 203 ~~~l~~L~~L~Ls~-N-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l 278 (440)
T 3zyj_A 203 LTPLIKLDELDLSG-N-HLSAIRPGSFQGLMHLQKLWMIQ-SQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPL 278 (440)
T ss_dssp CTTCSSCCEEECTT-S-CCCEECTTTTTTCTTCCEEECTT-CCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSC
T ss_pred cCCCcccCEEECCC-C-ccCccChhhhccCccCCEEECCC-CceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccc
Confidence 78889999999998 4 555553 2 567899999999 5777776455 88999999999995 6777776433 6
Q ss_pred CCCcEEecCCCc
Q 023528 230 KSLLRLGIDDCP 241 (281)
Q Consensus 230 ~~L~~L~l~~c~ 241 (281)
++|+.|++.+++
T Consensus 279 ~~L~~L~L~~Np 290 (440)
T 3zyj_A 279 HHLERIHLHHNP 290 (440)
T ss_dssp TTCCEEECCSSC
T ss_pred cCCCEEEcCCCC
Confidence 789999998755
No 17
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=1.3e-16 Score=142.44 Aligned_cols=206 Identities=19% Similarity=0.222 Sum_probs=159.7
Q ss_pred ccceeecccCCCCCcccCCCCCcc--CcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccc--------
Q 023528 2 KQDISRSSSGSTSRTPFSSENELP--ATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAER-------- 69 (281)
Q Consensus 2 ~~l~~l~~~~~~~l~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~-------- 69 (281)
++++.|+++++ .++.+++ ..+. ++|++|+++++. +..++. +..+++ |++|+++++. +..+|..
T Consensus 75 ~~l~~L~L~~n-~i~~~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~-L~~L~L~~n~-l~~~~~~~~~~l~~L 149 (452)
T 3zyi_A 75 SNTRYLNLMEN-NIQMIQA-DTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLAS-LNTLELFDNW-LTVIPSGAFEYLSKL 149 (452)
T ss_dssp TTCSEEECCSS-CCCEECT-TTTTTCTTCCEEECCSSC-CCEECTTTTTTCTT-CCEEECCSSC-CSBCCTTTSSSCTTC
T ss_pred CCccEEECcCC-cCceECH-HHcCCCCCCCEEECCCCc-cCCcChhhccCccc-CCEEECCCCc-CCccChhhhcccCCC
Confidence 35778888875 4776633 3332 699999999886 665543 788899 9999999975 4454432
Q ss_pred --eeecCCCCCccCCC-CCCCCCCccEEEeccCcccccccc-cCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecC
Q 023528 70 --IWIFGCPNLESFPE-GGLPSTKLTRLTIWKCKNLKALPN-CIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDD 145 (281)
Q Consensus 70 --L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~ 145 (281)
|+++++. +..++. .+..+++|++|++++|..++.++. .+..+++|++|+++++ .+..++....+++|+.|++++
T Consensus 150 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~ 227 (452)
T 3zyi_A 150 RELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSG 227 (452)
T ss_dssp CEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCCCTTCTTCCEEECTT
T ss_pred CEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccccccccccccEEECcC
Confidence 7777764 455554 566789999999999988888874 5789999999999985 677778778889999999999
Q ss_pred CCCccccchhhhccCCCcceEEeecCCCCCccCCC----CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCC
Q 023528 146 LKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCP 218 (281)
Q Consensus 146 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~ 218 (281)
| .++.++...+..+++|+.|++++ +.+..++. ..++|+.|++++ +.++.++... ..+++|++|++++++
T Consensus 228 N-~l~~~~~~~~~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 228 N-HFPEIRPGSFHGLSSLKKLWVMN--SQVSLIERNAFDGLASLVELNLAH-NNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp S-CCSEECGGGGTTCTTCCEEECTT--SCCCEECTTTTTTCTTCCEEECCS-SCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred C-cCcccCcccccCccCCCEEEeCC--CcCceECHHHhcCCCCCCEEECCC-CcCCccChHHhccccCCCEEEccCCC
Confidence 5 45555555789999999999998 45554432 457999999999 5888888665 889999999999864
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.75 E-value=2.7e-17 Score=152.82 Aligned_cols=231 Identities=14% Similarity=0.084 Sum_probs=125.7
Q ss_pred CccceeecccCCCCCcccCCCCCccCcCceeeccCCcCcc--cccc-CCCc------CCcCcEEEecCCcchhcccc--c
Q 023528 1 MKQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLA--FLSW-NGNL------PRALKYLYVKDCSKLESLAE--R 69 (281)
Q Consensus 1 ~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~--~l~~-~~~l------~~~L~~L~l~~~~~l~~~p~--~ 69 (281)
+++|+.|+++++.-.+.+|....-.++|++|++++|..+. .+|. ++.+ ++ |++|++++|.. ..+|. .
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~-L~~L~L~~n~l-~~ip~~~~ 325 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK-IQIIYIGYNNL-KTFPVETS 325 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGT-CCEEECCSSCC-SSCCCHHH
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCC-CCEEECCCCcC-CccCchhh
Confidence 4677788888776556663322233577777777775333 2443 2222 55 66666666542 24444 2
Q ss_pred ---------eeecCCCCCccCCCCCCCCCCccEEEeccCcccccccccCcCCCC-c------------------------
Q 023528 70 ---------IWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTS-L------------------------ 115 (281)
Q Consensus 70 ---------L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~-L------------------------ 115 (281)
++++++.....+| .+..+++|++|++++| .+..+|..+..+++ |
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~ 403 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV 403 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS-EEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSC
T ss_pred hccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC-ccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCc
Confidence 4554443222444 3334444555555443 22244444444444 4
Q ss_pred -cEEeecCCcCCcccCCC-C-------CCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC-CC---
Q 023528 116 -LHLEIRECRSLVSFPED-G-------FPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR-FP--- 182 (281)
Q Consensus 116 -~~L~l~~~~~l~~l~~~-~-------~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~--- 182 (281)
++|+++++......|.. . ..++|+.|++++| .++.++...+..+++|++|++++ +.+..+|. ..
T Consensus 404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~--N~l~~i~~~~~~~~ 480 (636)
T 4eco_A 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMG--NMLTEIPKNSLKDE 480 (636)
T ss_dssp EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCS--SCCSBCCSSSSEET
T ss_pred cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCC--CCCCCcCHHHhccc
Confidence 44444443222222211 1 2346666666663 33355554455677777777776 44556655 11
Q ss_pred C-------CccEEeccCCCCCccccccCC--CCCCcCEEeccCCCCcccccC-CCCCCCCcEEecCCC
Q 023528 183 A-------SLTQLGISDMPTLKCLSSVGE--NLTSLETLDLSNCPKLKYFSK-QGLPKSLLRLGIDDC 240 (281)
Q Consensus 183 ~-------~L~~L~l~~c~~l~~l~~~~~--~l~~L~~L~l~~c~~l~~i~~-~~~~~~L~~L~l~~c 240 (281)
. +|+.|++++ +.++.+|..+. .+++|++|++++| .++.+|. ...+++|++|+++++
T Consensus 481 ~~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N 546 (636)
T 4eco_A 481 NENFKNTYLLTSIDLRF-NKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQ 546 (636)
T ss_dssp TEECTTGGGCCEEECCS-SCCCBCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSC
T ss_pred cccccccCCccEEECcC-CcCCccChhhhhccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCC
Confidence 1 788888887 46667775554 7788888888874 4555654 223567777777543
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.74 E-value=1e-16 Score=143.00 Aligned_cols=58 Identities=21% Similarity=0.144 Sum_probs=28.1
Q ss_pred CCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCC--CCCCCCcEEecCCCc
Q 023528 182 PASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQ--GLPKSLLRLGIDDCP 241 (281)
Q Consensus 182 ~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~--~~~~~L~~L~l~~c~ 241 (281)
.++|+.|++++ +.++.++... ..+++|++|++++| .++.++.. +.+++|++|++++|.
T Consensus 298 l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~ 358 (455)
T 3v47_A 298 FTDLEQLTLAQ-NEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNH 358 (455)
T ss_dssp CTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSSC
T ss_pred CCCCCEEECCC-CcccccChhHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCCc
Confidence 34566666665 3444443222 55566666666654 33433221 124455555555543
No 20
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.74 E-value=1.2e-16 Score=133.91 Aligned_cols=204 Identities=19% Similarity=0.192 Sum_probs=149.8
Q ss_pred CCCcccCCCCCccCcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCC
Q 023528 13 TSRTPFSSENELPATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTK 90 (281)
Q Consensus 13 ~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~ 90 (281)
.+++.+ |.+ ++++|++|+++++. +..++. ++.+++ |++|+++++. +..+ .+..+..+++
T Consensus 21 ~~l~~i-p~~-~~~~l~~L~l~~n~-i~~~~~~~~~~~~~-L~~L~l~~n~-l~~~--------------~~~~~~~l~~ 81 (285)
T 1ozn_A 21 QGLQAV-PVG-IPAASQRIFLHGNR-ISHVPAASFRACRN-LTILWLHSNV-LARI--------------DAAAFTGLAL 81 (285)
T ss_dssp SCCSSC-CTT-CCTTCSEEECTTSC-CCEECTTTTTTCTT-CCEEECCSSC-CCEE--------------CTTTTTTCTT
T ss_pred CCcccC-CcC-CCCCceEEEeeCCc-CCccCHHHcccCCC-CCEEECCCCc-ccee--------------CHhhcCCccC
Confidence 457778 543 56799999999887 666654 788999 9999998864 2221 1334455779
Q ss_pred ccEEEeccCcccccc-cccCcCCCCccEEeecCCcCCcccCC--CCCCCCcCeEEecCCCCccccchhhhccCCCcceEE
Q 023528 91 LTRLTIWKCKNLKAL-PNCIHNLTSLLHLEIRECRSLVSFPE--DGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELR 167 (281)
Q Consensus 91 L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 167 (281)
|++|++++|..++.+ |..+..+++|++|+++++ .+..++. ...+++|++|++++| .++.++...+..+++|++|+
T Consensus 82 L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLF 159 (285)
T ss_dssp CCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEeCCCCCCccccCHHHhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEE
Confidence 999999997656666 567888999999999985 4444433 256789999999985 45556555678899999999
Q ss_pred eecCCCCCccCCC----CCCCccEEeccCCCCCccc-cccCCCCCCcCEEeccCCCCcccccC--CCCCCCCcEEecCCC
Q 023528 168 IRGGCPDLVSSPR----FPASLTQLGISDMPTLKCL-SSVGENLTSLETLDLSNCPKLKYFSK--QGLPKSLLRLGIDDC 240 (281)
Q Consensus 168 l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~i~~--~~~~~~L~~L~l~~c 240 (281)
+++ +.++.++. ..++|+.|+++++ .+..+ |..+..+++|++|++++| .++.++. ...+++|++|++.++
T Consensus 160 l~~--n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 160 LHG--NRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp CCS--SCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSS
T ss_pred CCC--CcccccCHHHhcCccccCEEECCCC-cccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCC
Confidence 998 45655554 4578999999994 66665 433388899999999995 5666664 233678999999886
Q ss_pred c
Q 023528 241 P 241 (281)
Q Consensus 241 ~ 241 (281)
+
T Consensus 236 ~ 236 (285)
T 1ozn_A 236 P 236 (285)
T ss_dssp C
T ss_pred C
Confidence 5
No 21
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.74 E-value=7.2e-17 Score=149.02 Aligned_cols=228 Identities=19% Similarity=0.088 Sum_probs=145.8
Q ss_pred cceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhcc---ccc---------e
Q 023528 3 QDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESL---AER---------I 70 (281)
Q Consensus 3 ~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~---p~~---------L 70 (281)
+++.|++++|. ++.+ |.. ..++|++|++++|.....+ .++.+++ |++|+++++.. ..+ |.. +
T Consensus 308 ~L~~L~l~~n~-l~~l-p~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~-L~~L~ls~n~l-~~~~~~~~~~~~~~~L~~L 381 (606)
T 3vq2_A 308 KWQSLSIIRCQ-LKQF-PTL-DLPFLKSLTLTMNKGSISF-KKVALPS-LSYLDLSRNAL-SFSGCCSYSDLGTNSLRHL 381 (606)
T ss_dssp CCSEEEEESCC-CSSC-CCC-CCSSCCEEEEESCSSCEEC-CCCCCTT-CCEEECCSSCE-EEEEECCHHHHCCSCCCEE
T ss_pred cCCEEEccccc-Cccc-ccC-CCCccceeeccCCcCccch-hhccCCC-CCEEECcCCcc-CCCcchhhhhccCCcccEe
Confidence 44555555544 2445 222 2235555555555433333 3445666 66666666542 111 111 6
Q ss_pred eecCCCCCccCCCCCCCCCCccEEEeccCccccccc-ccCcCCCCccEEeecCCcCCcccCCC-CCCCCcCeEEecCCCC
Q 023528 71 WIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLKI 148 (281)
Q Consensus 71 ~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~ 148 (281)
+++++. +..++..+..+++|++|++++|......| ..+..+++|++|+++++......+.. ..+++|++|++++|..
T Consensus 382 ~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 460 (606)
T 3vq2_A 382 DLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460 (606)
T ss_dssp ECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEE
T ss_pred ECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcC
Confidence 666654 55566667778888888888875544444 46778888999998886544434432 5678899999988654
Q ss_pred ccccchhhhccCCCcceEEeecCCCCCccC-CC---CCCCccEEeccCCCCCccc-cccCCCCCCcCEEeccCCCCcccc
Q 023528 149 SKPLFEWGLDRFACLRELRIRGGCPDLVSS-PR---FPASLTQLGISDMPTLKCL-SSVGENLTSLETLDLSNCPKLKYF 223 (281)
Q Consensus 149 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~---~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~i 223 (281)
........+..+++|++|++++ | .+..+ +. ..++|++|++++| .+..+ |..+..+++|++|++++| +++.+
T Consensus 461 ~~~~~~~~~~~l~~L~~L~Ls~-n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~ 536 (606)
T 3vq2_A 461 KDNTLSNVFANTTNLTFLDLSK-C-QLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFN-RIETS 536 (606)
T ss_dssp GGGEECSCCTTCTTCCEEECTT-S-CCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTS-CCCCE
T ss_pred CCcchHHhhccCCCCCEEECCC-C-cCCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCC-cCccc
Confidence 4433333678889999999998 5 44443 33 4678999999995 56555 534488899999999996 57788
Q ss_pred cCC--CCCCCCcEEecCCCc
Q 023528 224 SKQ--GLPKSLLRLGIDDCP 241 (281)
Q Consensus 224 ~~~--~~~~~L~~L~l~~c~ 241 (281)
|.. .++.+|++|++.+++
T Consensus 537 p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 537 KGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp ESCGGGSCTTCCEEECCSCC
T ss_pred CHhHhhhcccCcEEEccCCC
Confidence 764 223469999998755
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.74 E-value=5.1e-17 Score=150.01 Aligned_cols=231 Identities=17% Similarity=0.071 Sum_probs=131.4
Q ss_pred cceeecccCCCCCcccCCCCCc--cCcCceeeccCCcCcccccc-CCCcCCcCcEEEecCCcchhccccc---------e
Q 023528 3 QDISRSSSGSTSRTPFSSENEL--PATLEHLEVTHCSNLAFLSW-NGNLPRALKYLYVKDCSKLESLAER---------I 70 (281)
Q Consensus 3 ~l~~l~~~~~~~l~~~~~~~~~--~~~L~~L~l~~~~~l~~l~~-~~~l~~~L~~L~l~~~~~l~~~p~~---------L 70 (281)
+++.++++++ .++.+ +...+ .++|++|+++++. +..+|. ++.+++ |++|+++++......|.. +
T Consensus 255 ~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L 330 (606)
T 3t6q_A 255 SVESINLQKH-YFFNI-SSNTFHCFSGLQELDLTATH-LSELPSGLVGLST-LKKLVLSANKFENLCQISASNFPSLTHL 330 (606)
T ss_dssp EEEEEECTTC-CCSSC-CTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTT-CCEEECTTCCCSBGGGGCGGGCTTCSEE
T ss_pred ceeEEEeecC-ccCcc-CHHHhccccCCCEEeccCCc-cCCCChhhccccc-CCEEECccCCcCcCchhhhhccCcCCEE
Confidence 4667777764 35666 32222 2588888888775 556654 667777 888888876532222211 6
Q ss_pred eecCCCCCccCCCC-CCCCCCccEEEeccCcccccc--cccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecC
Q 023528 71 WIFGCPNLESFPEG-GLPSTKLTRLTIWKCKNLKAL--PNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDD 145 (281)
Q Consensus 71 ~l~~~~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~l--p~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~ 145 (281)
+++++.....++.. +..+++|++|++++|...... +..+..+++|++|+++++. +..++.. ..+++|+.|++++
T Consensus 331 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~ 409 (606)
T 3t6q_A 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAF 409 (606)
T ss_dssp ECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTT
T ss_pred ECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCC
Confidence 66666544445443 555677777777775433222 4556677777777777643 3333222 4566777777776
Q ss_pred CCCccccchhhhccCCCcceEEeecCCCCCccCCC---CCCCccEEeccCCCCCcc--ccc--cCCCCCCcCEEeccCCC
Q 023528 146 LKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLKC--LSS--VGENLTSLETLDLSNCP 218 (281)
Q Consensus 146 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~--l~~--~~~~l~~L~~L~l~~c~ 218 (281)
|......+...+..+++|++|++++ |.-....+. ..++|++|+++++ .+.. ++. .+..+++|++|++++|
T Consensus 410 n~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n- 486 (606)
T 3t6q_A 410 TRLKVKDAQSPFQNLHLLKVLNLSH-SLLDISSEQLFDGLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFC- 486 (606)
T ss_dssp CCEECCTTCCTTTTCTTCCEEECTT-CCCBTTCTTTTTTCTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTTS-
T ss_pred CcCCCcccchhhhCcccCCEEECCC-CccCCcCHHHHhCCCCCCEEECCCC-CCCccccccchhhccCCCccEEECCCC-
Confidence 5443333333456677777777776 432222222 3456777777774 3332 221 1256667777777765
Q ss_pred CcccccCC--CCCCCCcEEecCCCc
Q 023528 219 KLKYFSKQ--GLPKSLLRLGIDDCP 241 (281)
Q Consensus 219 ~l~~i~~~--~~~~~L~~L~l~~c~ 241 (281)
.+..++.. +.+++|++|+++++.
T Consensus 487 ~l~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 487 DLSSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ccCccChhhhccccCCCEEECCCCc
Confidence 34444321 224667777776664
No 23
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.74 E-value=7.9e-17 Score=141.02 Aligned_cols=77 Identities=19% Similarity=0.168 Sum_probs=35.4
Q ss_pred CCcceEEeecCCCCCccCCC--CCCCccEEeccCCCCCccc-cccCCCCCCcCEEeccCCCCcccccCCC-CCCCCcEEe
Q 023528 161 ACLRELRIRGGCPDLVSSPR--FPASLTQLGISDMPTLKCL-SSVGENLTSLETLDLSNCPKLKYFSKQG-LPKSLLRLG 236 (281)
Q Consensus 161 ~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~i~~~~-~~~~L~~L~ 236 (281)
++|+.|++++ +.+...+. ..++|++|+++++ .++.+ |..+..+++|++|++++| .++.++... .+++|++|+
T Consensus 226 ~~L~~L~l~~--n~l~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~ 301 (390)
T 3o6n_A 226 VELTILKLQH--NNLTDTAWLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLD 301 (390)
T ss_dssp SSCCEEECCS--SCCCCCGGGGGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEE
T ss_pred ccccEEECCC--CCCcccHHHcCCCCccEEECCCC-cCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEE
Confidence 3455555554 22222222 3345555665552 34433 212255555556666553 344444321 245555555
Q ss_pred cCCCc
Q 023528 237 IDDCP 241 (281)
Q Consensus 237 l~~c~ 241 (281)
+++|.
T Consensus 302 L~~n~ 306 (390)
T 3o6n_A 302 LSHNH 306 (390)
T ss_dssp CCSSC
T ss_pred CCCCc
Confidence 55553
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=1.2e-16 Score=147.60 Aligned_cols=81 Identities=19% Similarity=0.163 Sum_probs=39.5
Q ss_pred hhccCCCcceEEeecCCCCCccCCC---CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCCCCCCCC
Q 023528 156 GLDRFACLRELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKSL 232 (281)
Q Consensus 156 ~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~L 232 (281)
.+..+++|+.|++++ +.+..++. ..++|+.|++++ +.+..+|..+..+++|++|++++| .+..++. ..+++|
T Consensus 273 ~~~~l~~L~~L~Ls~--N~l~~l~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~L 347 (597)
T 3oja_B 273 PFVKMQRLERLYISN--NRLVALNLYGQPIPTLKVLDLSH-NHLLHVERNQPQFDRLENLYLDHN-SIVTLKL-STHHTL 347 (597)
T ss_dssp GGTTCSSCCEEECTT--SCCCEEECSSSCCTTCCEEECCS-SCCCCCGGGHHHHTTCSEEECCSS-CCCCCCC-CTTCCC
T ss_pred HhcCccCCCEEECCC--CCCCCCCcccccCCCCcEEECCC-CCCCccCcccccCCCCCEEECCCC-CCCCcCh-hhcCCC
Confidence 344445555555554 23333332 234555555555 344455533345555556666553 3333332 224566
Q ss_pred cEEecCCCc
Q 023528 233 LRLGIDDCP 241 (281)
Q Consensus 233 ~~L~l~~c~ 241 (281)
++|++++++
T Consensus 348 ~~L~l~~N~ 356 (597)
T 3oja_B 348 KNLTLSHND 356 (597)
T ss_dssp SEEECCSSC
T ss_pred CEEEeeCCC
Confidence 777776655
No 25
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.74 E-value=2.2e-16 Score=140.42 Aligned_cols=206 Identities=19% Similarity=0.230 Sum_probs=160.5
Q ss_pred ccceeecccCCCCCcccCCCCCcc--CcCceeeccCCcCccccc--cCCCcCCcCcEEEecCCcchhccccc--------
Q 023528 2 KQDISRSSSGSTSRTPFSSENELP--ATLEHLEVTHCSNLAFLS--WNGNLPRALKYLYVKDCSKLESLAER-------- 69 (281)
Q Consensus 2 ~~l~~l~~~~~~~l~~~~~~~~~~--~~L~~L~l~~~~~l~~l~--~~~~l~~~L~~L~l~~~~~l~~~p~~-------- 69 (281)
+.++.|+++++. ++.+ +...+. ++|++|++++|. +..++ .+..+++ |++|+++++. +..++..
T Consensus 64 ~~l~~L~L~~n~-i~~~-~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~-L~~L~L~~n~-l~~~~~~~~~~l~~L 138 (440)
T 3zyj_A 64 TNTRLLNLHENQ-IQII-KVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLAN-LNTLELFDNR-LTTIPNGAFVYLSKL 138 (440)
T ss_dssp TTCSEEECCSCC-CCEE-CTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSS-CCEEECCSSC-CSSCCTTTSCSCSSC
T ss_pred CCCcEEEccCCc-CCee-CHHHhhCCCCCCEEECCCCc-CCccChhhccCCcc-CCEEECCCCc-CCeeCHhHhhccccC
Confidence 356778888754 7777 333333 699999999886 66555 3788999 9999999974 5555432
Q ss_pred --eeecCCCCCccCCC-CCCCCCCccEEEeccCcccccccc-cCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecC
Q 023528 70 --IWIFGCPNLESFPE-GGLPSTKLTRLTIWKCKNLKALPN-CIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDD 145 (281)
Q Consensus 70 --L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~ 145 (281)
|+++++. +..++. .+..+++|++|++++|..+..++. .+..+++|++|+++++ .++.+|....+++|+.|++++
T Consensus 139 ~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~ 216 (440)
T 3zyj_A 139 KELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSG 216 (440)
T ss_dssp CEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTT
T ss_pred ceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccccCCCcccCEEECCC
Confidence 7777764 445554 566789999999999888888874 5789999999999985 677888778889999999999
Q ss_pred CCCccccchhhhccCCCcceEEeecCCCCCccCCC----CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCC
Q 023528 146 LKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCP 218 (281)
Q Consensus 146 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~ 218 (281)
| .++.++...+..+++|+.|++++ +.+..++. ..++|+.|++++ +.++.++... ..+++|++|++++++
T Consensus 217 N-~l~~~~~~~~~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 217 N-HLSAIRPGSFQGLMHLQKLWMIQ--SQIQVIERNAFDNLQSLVEINLAH-NNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp S-CCCEECTTTTTTCTTCCEEECTT--CCCCEECTTSSTTCTTCCEEECTT-SCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred C-ccCccChhhhccCccCCEEECCC--CceeEEChhhhcCCCCCCEEECCC-CCCCccChhHhccccCCCEEEcCCCC
Confidence 6 55555555789999999999998 45555543 467899999999 6888888666 889999999999864
No 26
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.74 E-value=2.8e-16 Score=145.07 Aligned_cols=258 Identities=16% Similarity=0.059 Sum_probs=176.4
Q ss_pred CccceeecccCCCCCcccCCCCCccCcCceeeccCCcCcccc-c-cCCCcCCcCcEEEecCCcchhccccc---------
Q 023528 1 MKQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFL-S-WNGNLPRALKYLYVKDCSKLESLAER--------- 69 (281)
Q Consensus 1 ~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l-~-~~~~l~~~L~~L~l~~~~~l~~~p~~--------- 69 (281)
+++++.|+++++. ++.+|....-.++|++|++++|. +..+ + .++.+++ |++|+++++.....+|..
T Consensus 277 l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 277 FSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANK-FENLCQISASNFPS-LTHLSIKGNTKRLELGTGCLENLENLR 353 (606)
T ss_dssp CTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCC-CSBGGGGCGGGCTT-CSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred ccCCCEEeccCCc-cCCCChhhcccccCCEEECccCC-cCcCchhhhhccCc-CCEEECCCCCcccccchhhhhccCcCC
Confidence 4678899999864 77884433333799999999887 5544 3 3777888 999999998655454432
Q ss_pred -eeecCCCCCccC--CCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCC--CCCCCCcCeEEec
Q 023528 70 -IWIFGCPNLESF--PEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPE--DGFPTNLQSLVVD 144 (281)
Q Consensus 70 -L~l~~~~~l~~l--~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~ 144 (281)
++++++...... +.....+++|++|++++|......|..+..+++|++|+++++......+. ...+++|+.|+++
T Consensus 354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 433 (606)
T 3t6q_A 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433 (606)
T ss_dssp EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECT
T ss_pred EEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECC
Confidence 777766433222 55677788999999999765555567888899999999998643333332 3567899999999
Q ss_pred CCCCccccchhhhccCCCcceEEeecCCCCCcc--CCC-----CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccC
Q 023528 145 DLKISKPLFEWGLDRFACLRELRIRGGCPDLVS--SPR-----FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSN 216 (281)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~-----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~ 216 (281)
+|.. ...+...+..+++|++|++++ +. +.. ++. ..++|+.|++++| .++.++... +.+++|++|++++
T Consensus 434 ~n~l-~~~~~~~~~~l~~L~~L~L~~-n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~ 509 (606)
T 3t6q_A 434 HSLL-DISSEQLFDGLPALQHLNLQG-NH-FPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSH 509 (606)
T ss_dssp TCCC-BTTCTTTTTTCTTCCEEECTT-CB-CGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcc-CCcCHHHHhCCCCCCEEECCC-CC-CCccccccchhhccCCCccEEECCCC-ccCccChhhhccccCCCEEECCC
Confidence 8654 333334678899999999998 43 332 221 4578999999995 566654344 8899999999999
Q ss_pred CCCcccccC--CCCCCCCcEEecCCCchHHHHHhhcCCCCCcccccccccccccEEEECCEEee
Q 023528 217 CPKLKYFSK--QGLPKSLLRLGIDDCPLMEKRWIKADYPYTFATRYWPMITHIPCVIVNGRFVF 278 (281)
Q Consensus 217 c~~l~~i~~--~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 278 (281)
| .+..++. ...+++| +|+++++..-.... ..+..+..+..+.+.|+.+.
T Consensus 510 N-~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~-----------~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 510 N-RLTSSSIEALSHLKGI-YLNLASNHISIILP-----------SLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp S-CCCGGGGGGGTTCCSC-EEECCSSCCCCCCG-----------GGHHHHHTSSEEECTTCCEE
T ss_pred C-ccCcCChhHhCccccc-EEECcCCcccccCH-----------hhcccCCCCCEEeCCCCCcc
Confidence 6 4544433 2235778 89998886321100 11344567788888887654
No 27
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.73 E-value=8.8e-16 Score=131.36 Aligned_cols=221 Identities=15% Similarity=0.119 Sum_probs=115.4
Q ss_pred ceeecccCCCCCcccCCCCCccCcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccc---------eee
Q 023528 4 DISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAER---------IWI 72 (281)
Q Consensus 4 l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~---------L~l 72 (281)
++.+.+++. .++.+ |. .+++.+++|+++++. +..++. ++.+++ |++|+++++......|.. +++
T Consensus 33 l~~l~~~~~-~l~~l-p~-~~~~~l~~L~L~~n~-i~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 33 LRVVQCSDL-GLEKV-PK-DLPPDTALLDLQNNK-ITEIKDGDFKNLKN-LHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp TTEEECTTS-CCCSC-CC-SCCTTCCEEECCSSC-CCCBCTTTTTTCTT-CCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CeEEEecCC-Ccccc-Cc-cCCCCCeEEECCCCc-CCEeChhhhccCCC-CCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 445555543 46667 43 345688888888876 665554 777888 888888886522211221 444
Q ss_pred cCCCCCccCCCCCCCCCCccEEEeccCccccccc-ccCcCCCCccEEeecCCcCCc--ccCC-CCCCCCcCeEEecCCCC
Q 023528 73 FGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLV--SFPE-DGFPTNLQSLVVDDLKI 148 (281)
Q Consensus 73 ~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~--~l~~-~~~~~~L~~L~l~~~~~ 148 (281)
+++ .+..+|.... ++|++|++++|. +..++ ..+..+++|++|+++++.... ..+. ...+++|+.|++++| .
T Consensus 108 s~n-~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~ 182 (330)
T 1xku_A 108 SKN-QLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-N 182 (330)
T ss_dssp CSS-CCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-C
T ss_pred CCC-cCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-c
Confidence 443 2334444333 356666666543 22332 334556666666665532211 1111 133556666666653 2
Q ss_pred ccccchhhhccCCCcceEEeecCCCCCccCCC----CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccc
Q 023528 149 SKPLFEWGLDRFACLRELRIRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYF 223 (281)
Q Consensus 149 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i 223 (281)
++.++.. ..++|++|++++ + .++.++. ..++|+.|++++ +.++.++... ..+++|++|++++| .+..+
T Consensus 183 l~~l~~~---~~~~L~~L~l~~-n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l 255 (330)
T 1xku_A 183 ITTIPQG---LPPSLTELHLDG-N-KITKVDAASLKGLNNLAKLGLSF-NSISAVDNGSLANTPHLRELHLNNN-KLVKV 255 (330)
T ss_dssp CCSCCSS---CCTTCSEEECTT-S-CCCEECTGGGTTCTTCCEEECCS-SCCCEECTTTGGGSTTCCEEECCSS-CCSSC
T ss_pred cccCCcc---ccccCCEEECCC-C-cCCccCHHHhcCCCCCCEEECCC-CcCceeChhhccCCCCCCEEECCCC-cCccC
Confidence 3333321 125566666665 2 3333321 344666666666 3455544333 55666666666664 45555
Q ss_pred cC-CCCCCCCcEEecCCCc
Q 023528 224 SK-QGLPKSLLRLGIDDCP 241 (281)
Q Consensus 224 ~~-~~~~~~L~~L~l~~c~ 241 (281)
|. ...+++|++|+++++.
T Consensus 256 p~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 256 PGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp CTTTTTCSSCCEEECCSSC
T ss_pred ChhhccCCCcCEEECCCCc
Confidence 54 2224566666666654
No 28
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.73 E-value=7.9e-17 Score=149.71 Aligned_cols=231 Identities=16% Similarity=0.118 Sum_probs=156.2
Q ss_pred CccceeecccCCCCCcc------------------cCCCCC--ccCcCceeeccCCcCcccccc-CCCcCCcCcEEEecC
Q 023528 1 MKQDISRSSSGSTSRTP------------------FSSENE--LPATLEHLEVTHCSNLAFLSW-NGNLPRALKYLYVKD 59 (281)
Q Consensus 1 ~~~l~~l~~~~~~~l~~------------------~~~~~~--~~~~L~~L~l~~~~~l~~l~~-~~~l~~~L~~L~l~~ 59 (281)
+++|+.|+++++. ++. +|.... -.++|++|++++|.....+|. ++.+++ |++|++++
T Consensus 205 l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~Ls~ 282 (636)
T 4eco_A 205 LTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE-MQLINVAC 282 (636)
T ss_dssp CTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSS-CCEEECTT
T ss_pred ccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCC-CCEEECcC
Confidence 4688999999876 666 844444 357999999999986667775 888999 99999999
Q ss_pred Cc-chh-cccc------------c---eeecCCCCCccCCC--CCCCCCCccEEEeccCcccccccccCcCCCCccEEee
Q 023528 60 CS-KLE-SLAE------------R---IWIFGCPNLESFPE--GGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEI 120 (281)
Q Consensus 60 ~~-~l~-~~p~------------~---L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l 120 (281)
+. ..+ .+|. . ++++++. +..+|. .+..+++|++|++++|...+.+| .+..+++|++|++
T Consensus 283 n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L 360 (636)
T 4eco_A 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL 360 (636)
T ss_dssp CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEEC
T ss_pred CCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEEC
Confidence 97 333 3442 1 7888874 458888 78889999999999976555888 8899999999999
Q ss_pred cCCcCCcccCCC-CCCCC-cCeEEecCCCCccccchhhhccC--CCcceEEeecCCCCCccCCC----------CCCCcc
Q 023528 121 RECRSLVSFPED-GFPTN-LQSLVVDDLKISKPLFEWGLDRF--ACLRELRIRGGCPDLVSSPR----------FPASLT 186 (281)
Q Consensus 121 ~~~~~l~~l~~~-~~~~~-L~~L~l~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~----------~~~~L~ 186 (281)
+++ .+..+|.. ..+++ |+.|++++|. ++.+|. .+... ++|++|++++ +.-....|. ...+|+
T Consensus 361 ~~N-~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~-~~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~~~~~~~~~~~L~ 436 (636)
T 4eco_A 361 AYN-QITEIPANFCGFTEQVENLSFAHNK-LKYIPN-IFDAKSVSVMSAIDFSY-NEIGSVDGKNFDPLDPTPFKGINVS 436 (636)
T ss_dssp CSS-EEEECCTTSEEECTTCCEEECCSSC-CSSCCS-CCCTTCSSCEEEEECCS-SCTTTTTTCSSCTTCSSCCCCCCEE
T ss_pred CCC-ccccccHhhhhhcccCcEEEccCCc-Ccccch-hhhhcccCccCEEECcC-CcCCCcchhhhcccccccccCCCCC
Confidence 985 45566654 44566 8889988855 345553 33333 3677777776 433222222 123566
Q ss_pred EEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCCCC--CC-------CCcEEecCCCc
Q 023528 187 QLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQGL--PK-------SLLRLGIDDCP 241 (281)
Q Consensus 187 ~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~~~--~~-------~L~~L~l~~c~ 241 (281)
.|++++ +.++.+|... ..+++|++|++++| .++.+|...+ .. +|++|++++|.
T Consensus 437 ~L~Ls~-N~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 499 (636)
T 4eco_A 437 SINLSN-NQISKFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499 (636)
T ss_dssp EEECCS-SCCCSCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSSC
T ss_pred EEECcC-CccCcCCHHHHccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCCc
Confidence 666666 4555666433 44666666666663 3445554322 11 56666666554
No 29
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.72 E-value=1.5e-16 Score=146.97 Aligned_cols=229 Identities=17% Similarity=0.073 Sum_probs=141.9
Q ss_pred ccceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccc-------eeecC
Q 023528 2 KQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER-------IWIFG 74 (281)
Q Consensus 2 ~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~-------L~l~~ 74 (281)
++++.++++++. ++.+ +.....++|++|++++|. ++.+|.+ .+++ |++|+++++..+..++.. +++++
T Consensus 285 ~~L~~L~l~~~~-~~~l-~~l~~~~~L~~L~l~~n~-l~~lp~~-~l~~-L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~ 359 (606)
T 3vq2_A 285 ANVSAMSLAGVS-IKYL-EDVPKHFKWQSLSIIRCQ-LKQFPTL-DLPF-LKSLTLTMNKGSISFKKVALPSLSYLDLSR 359 (606)
T ss_dssp TTCSEEEEESCC-CCCC-CCCCTTCCCSEEEEESCC-CSSCCCC-CCSS-CCEEEEESCSSCEECCCCCCTTCCEEECCS
T ss_pred CCCCEEEecCcc-chhh-hhccccccCCEEEccccc-CcccccC-CCCc-cceeeccCCcCccchhhccCCCCCEEECcC
Confidence 345566666543 4555 322222577777777776 3666666 6777 777777777544433221 55554
Q ss_pred CCCCccC---CCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccC--CCCCCCCcCeEEecCCCCc
Q 023528 75 CPNLESF---PEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFP--EDGFPTNLQSLVVDDLKIS 149 (281)
Q Consensus 75 ~~~l~~l---~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~--~~~~~~~L~~L~l~~~~~~ 149 (281)
+. +..+ +.....+++|++|++++|. +..+|..+..+++|++|+++++......+ ....+++|+.|++++|...
T Consensus 360 n~-l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 437 (606)
T 3vq2_A 360 NA-LSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437 (606)
T ss_dssp SC-EEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCE
T ss_pred Cc-cCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCC
Confidence 42 2222 3344456777888877754 55566677778888888887753333323 2256778888888886544
Q ss_pred cccchhhhccCCCcceEEeecCCCCCcc-CCC---CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccc-
Q 023528 150 KPLFEWGLDRFACLRELRIRGGCPDLVS-SPR---FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYF- 223 (281)
Q Consensus 150 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~---~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i- 223 (281)
...+ ..+..+++|++|++++ +.-... ++. ..++|+.|++++| .++.++... +.+++|++|++++| .+..+
T Consensus 438 ~~~~-~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~ 513 (606)
T 3vq2_A 438 IDFD-GIFLGLTSLNTLKMAG-NSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHN-NLLFLD 513 (606)
T ss_dssp ECCT-TTTTTCTTCCEEECTT-CEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCEE
T ss_pred ccch-hhhcCCCCCCEEECCC-CcCCCcchHHhhccCCCCCEEECCCC-cCCccChhhhcccccCCEEECCCC-cCCCcC
Confidence 4333 3577888888888887 433221 343 4568888888885 555554344 78888888888886 45544
Q ss_pred cC-CCCCCCCcEEecCCCc
Q 023528 224 SK-QGLPKSLLRLGIDDCP 241 (281)
Q Consensus 224 ~~-~~~~~~L~~L~l~~c~ 241 (281)
|. ...+++|++|++++|.
T Consensus 514 ~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 514 SSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp GGGTTTCTTCCEEECTTSC
T ss_pred HHHccCCCcCCEEECCCCc
Confidence 33 2235788888888876
No 30
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=1.9e-16 Score=150.88 Aligned_cols=230 Identities=14% Similarity=0.088 Sum_probs=138.0
Q ss_pred CccceeecccCCCCCcccCCCCCccCcCceeeccCCcCcc--cccc--------CCCcCCcCcEEEecCCcchhcccc--
Q 023528 1 MKQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLA--FLSW--------NGNLPRALKYLYVKDCSKLESLAE-- 68 (281)
Q Consensus 1 ~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~--~l~~--------~~~l~~~L~~L~l~~~~~l~~~p~-- 68 (281)
+++|+.|+++++.-...+|....-.++|++|++++|..+. .+|. +..+++ |++|+++++.. ..+|.
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~-L~~L~Ls~N~L-~~ip~~~ 567 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK-IQIFYMGYNNL-EEFPASA 567 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTT-CCEEECCSSCC-CBCCCHH
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCC-ccEEEeeCCcC-CccCChh
Confidence 4567788888776566663222223577777777775333 2332 233446 77777777653 35555
Q ss_pred c---------eeecCCCCCccCCCCCCCCCCccEEEeccCcccccccccCcCCCC-ccEEeecCCcCCcccCCC-C----
Q 023528 69 R---------IWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTS-LLHLEIRECRSLVSFPED-G---- 133 (281)
Q Consensus 69 ~---------L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~-L~~L~l~~~~~l~~l~~~-~---- 133 (281)
. |+++++. +..+| .+..+++|+.|++++|. +..+|..+..+++ |+.|+++++. +..+|.. .
T Consensus 568 ~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~ 643 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSV 643 (876)
T ss_dssp HHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCS
T ss_pred hhhcCCCCCEEECCCCC-cccch-hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCC-CCcCchhhhcccc
Confidence 2 5665553 33555 55556666666666643 3355655666665 6666666532 3233321 1
Q ss_pred ---------------------------CCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC-C---C
Q 023528 134 ---------------------------FPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR-F---P 182 (281)
Q Consensus 134 ---------------------------~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~---~ 182 (281)
..++|+.|++++| .+..++...+..+++|+.|++++ +.+..+|. . .
T Consensus 644 ~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~--N~L~~ip~~~~~~~ 720 (876)
T 4ecn_A 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSN--NLMTSIPENSLKPK 720 (876)
T ss_dssp SCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCS--CCCSCCCTTSSSCT
T ss_pred CCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCC--CcCCccChHHhccc
Confidence 1235666666663 33456655556778888888887 45556665 1 1
Q ss_pred -------CCccEEeccCCCCCccccccCC--CCCCcCEEeccCCCCcccccC-CCCCCCCcEEecCCCc
Q 023528 183 -------ASLTQLGISDMPTLKCLSSVGE--NLTSLETLDLSNCPKLKYFSK-QGLPKSLLRLGIDDCP 241 (281)
Q Consensus 183 -------~~L~~L~l~~c~~l~~l~~~~~--~l~~L~~L~l~~c~~l~~i~~-~~~~~~L~~L~l~~c~ 241 (281)
++|+.|++++ +.++.+|..+. .+++|+.|++++| .+..+|. .+.+++|+.|++++++
T Consensus 721 ~~~l~nl~~L~~L~Ls~-N~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 721 DGNYKNTYLLTTIDLRF-NKLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp TSCCTTGGGCCEEECCS-SCCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCB
T ss_pred cccccccCCccEEECCC-CCCccchHHhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCC
Confidence 1788888888 46778885555 7888888888885 5556664 2236788888887644
No 31
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.72 E-value=1.4e-16 Score=134.88 Aligned_cols=218 Identities=21% Similarity=0.216 Sum_probs=153.0
Q ss_pred CCCcccCCCCCccCcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhcc---ccc---------eeecCCCCC
Q 023528 13 TSRTPFSSENELPATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESL---AER---------IWIFGCPNL 78 (281)
Q Consensus 13 ~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~---p~~---------L~l~~~~~l 78 (281)
.+++.+ |. .++++|++|+++++. +..+|. ++.+++ |++|+++++. +..+ +.. ++++++. +
T Consensus 17 ~~l~~i-p~-~~~~~l~~L~L~~n~-l~~i~~~~~~~l~~-L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~-i 90 (306)
T 2z66_A 17 KGLTSV-PT-GIPSSATRLELESNK-LQSLPHGVFDKLTQ-LTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-V 90 (306)
T ss_dssp SCCSSC-CS-CCCTTCCEEECCSSC-CCCCCTTTTTTCTT-CSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSCS-E
T ss_pred CCcccC-CC-CCCCCCCEEECCCCc-cCccCHhHhhcccc-CCEEECCCCc-cCcccCcccccccccccCEEECCCCc-c
Confidence 347778 54 345699999999887 677765 678899 9999999875 2221 111 6776653 4
Q ss_pred ccCCCCCCCCCCccEEEeccCccccccc--ccCcCCCCccEEeecCCcCCcccCC-CCCCCCcCeEEecCCCCccccchh
Q 023528 79 ESFPEGGLPSTKLTRLTIWKCKNLKALP--NCIHNLTSLLHLEIRECRSLVSFPE-DGFPTNLQSLVVDDLKISKPLFEW 155 (281)
Q Consensus 79 ~~l~~~~~~~~~L~~L~l~~c~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~ 155 (281)
..++.....+++|++|+++++. +..++ ..+..+++|++|+++++......+. ...+++|++|++++|.........
T Consensus 91 ~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 169 (306)
T 2z66_A 91 ITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169 (306)
T ss_dssp EEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred ccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh
Confidence 5566666678899999999954 44444 3678899999999998643333332 256789999999986544422233
Q ss_pred hhccCCCcceEEeecCCCCCccC-CC---CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCC---C
Q 023528 156 GLDRFACLRELRIRGGCPDLVSS-PR---FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQ---G 227 (281)
Q Consensus 156 ~~~~l~~L~~L~l~~~~~~~~~~-~~---~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~---~ 227 (281)
.+..+++|++|++++ + .++.+ +. ..++|+.|++++ +.++.++... ..+++|++|++++|. +...... .
T Consensus 170 ~~~~l~~L~~L~Ls~-n-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~ 245 (306)
T 2z66_A 170 IFTELRNLTFLDLSQ-C-QLEQLSPTAFNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQH 245 (306)
T ss_dssp CCTTCTTCCEEECTT-S-CCCEECTTTTTTCTTCCEEECTT-SCCSBCCSGGGTTCTTCCEEECTTSC-CCBCSSSSCCC
T ss_pred HHhhCcCCCEEECCC-C-CcCCcCHHHhcCCCCCCEEECCC-CccCccChhhccCcccCCEeECCCCC-CcccCHHHHHh
Confidence 678889999999998 4 45554 33 456899999999 5677776444 788999999999964 4444332 2
Q ss_pred CCCCCcEEecCCCc
Q 023528 228 LPKSLLRLGIDDCP 241 (281)
Q Consensus 228 ~~~~L~~L~l~~c~ 241 (281)
++++|++|++++++
T Consensus 246 ~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 246 FPSSLAFLNLTQND 259 (306)
T ss_dssp CCTTCCEEECTTCC
T ss_pred hhccCCEEEccCCC
Confidence 24589999998865
No 32
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.71 E-value=9.1e-17 Score=138.79 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=31.3
Q ss_pred ccccCCCCCCcCEEeccCCCCcccccCCC--CCCCCcEEecCCCc
Q 023528 199 LSSVGENLTSLETLDLSNCPKLKYFSKQG--LPKSLLRLGIDDCP 241 (281)
Q Consensus 199 l~~~~~~l~~L~~L~l~~c~~l~~i~~~~--~~~~L~~L~l~~c~ 241 (281)
+|..+..+++|++|++++| +++.+|... .+++|++|++++++
T Consensus 269 l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp HHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred hHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 4422367889999999995 677887743 36889999998865
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.71 E-value=4.1e-16 Score=139.35 Aligned_cols=131 Identities=18% Similarity=0.126 Sum_probs=71.3
Q ss_pred CccceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccc-------eeec
Q 023528 1 MKQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER-------IWIF 73 (281)
Q Consensus 1 ~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~-------L~l~ 73 (281)
+++++.|+++++. ++.+ +.+.+ ++|++|++++|. +..++ ++.+++ |++|+++++. +..+|-+ ++++
T Consensus 63 l~~L~~L~Ls~n~-l~~~-~~~~l-~~L~~L~Ls~N~-l~~~~-~~~l~~-L~~L~L~~N~-l~~l~~~~l~~L~~L~l~ 135 (457)
T 3bz5_A 63 LTGLTKLICTSNN-ITTL-DLSQN-TNLTYLACDSNK-LTNLD-VTPLTK-LTYLNCDTNK-LTKLDVSQNPLLTYLNCA 135 (457)
T ss_dssp CTTCSEEECCSSC-CSCC-CCTTC-TTCSEEECCSSC-CSCCC-CTTCTT-CCEEECCSSC-CSCCCCTTCTTCCEEECT
T ss_pred cCCCCEEEccCCc-CCeE-ccccC-CCCCEEECcCCC-Cceee-cCCCCc-CCEEECCCCc-CCeecCCCCCcCCEEECC
Confidence 3567777777654 6666 43433 478888887766 55554 667777 7777777764 3333311 5554
Q ss_pred CCCCCccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecC
Q 023528 74 GCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDD 145 (281)
Q Consensus 74 ~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~ 145 (281)
++. +..++ ...+++|++|++++|..++.+ .+..+++|++|+++++ .++.++ ...+++|+.|++++
T Consensus 136 ~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~~l~-l~~l~~L~~L~l~~ 200 (457)
T 3bz5_A 136 RNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN-KITELD-VSQNKLLNRLNCDT 200 (457)
T ss_dssp TSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS-CCCCCC-CTTCTTCCEEECCS
T ss_pred CCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC-ccceec-cccCCCCCEEECcC
Confidence 432 33332 334556666666665544444 3445555555555553 333333 23334444444444
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=4.2e-16 Score=143.85 Aligned_cols=121 Identities=18% Similarity=0.120 Sum_probs=67.3
Q ss_pred CcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccC-CC---CCCCccEEeccCCCCCccccccCCCCCCcCEE
Q 023528 137 NLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSS-PR---FPASLTQLGISDMPTLKCLSSVGENLTSLETL 212 (281)
Q Consensus 137 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~---~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L 212 (281)
+|+.|++++|.. +..+ .+..+++|+.|++++ + .+..+ |. ..++|+.|++++ +.+..+|.....+++|++|
T Consensus 233 ~L~~L~L~~n~l-~~~~--~l~~l~~L~~L~Ls~-N-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L 306 (597)
T 3oja_B 233 ELTILKLQHNNL-TDTA--WLLNYPGLVEVDLSY-N-ELEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVL 306 (597)
T ss_dssp CCCEEECCSSCC-CCCG--GGGGCTTCSEEECCS-S-CCCEEESGGGTTCSSCCEEECTT-SCCCEEECSSSCCTTCCEE
T ss_pred CCCEEECCCCCC-CCCh--hhccCCCCCEEECCC-C-ccCCCCHHHhcCccCCCEEECCC-CCCCCCCcccccCCCCcEE
Confidence 455555554322 2222 456667777777776 3 33332 22 345677777777 4666666444666777777
Q ss_pred eccCCCCcccccCC-CCCCCCcEEecCCCchHHHHHhhcCCCCCcccccccccccccEEEECCEEee
Q 023528 213 DLSNCPKLKYFSKQ-GLPKSLLRLGIDDCPLMEKRWIKADYPYTFATRYWPMITHIPCVIVNGRFVF 278 (281)
Q Consensus 213 ~l~~c~~l~~i~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 278 (281)
++++| .+..+|.. +.+++|++|++++|..- + .+...+..+..+.+.|+.+.
T Consensus 307 ~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~l~--------~------~~~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 307 DLSHN-HLLHVERNQPQFDRLENLYLDHNSIV--------T------LKLSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp ECCSS-CCCCCGGGHHHHTTCSEEECCSSCCC--------C------CCCCTTCCCSEEECCSSCEE
T ss_pred ECCCC-CCCccCcccccCCCCCEEECCCCCCC--------C------cChhhcCCCCEEEeeCCCCC
Confidence 77774 44555542 22567777777776531 1 22334556667777776543
No 35
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.71 E-value=2.1e-16 Score=133.80 Aligned_cols=227 Identities=18% Similarity=0.161 Sum_probs=153.0
Q ss_pred ceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccc----------eeecCCCCCccC---CCCCCCCCCccEEE
Q 023528 29 EHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER----------IWIFGCPNLESF---PEGGLPSTKLTRLT 95 (281)
Q Consensus 29 ~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~----------L~l~~~~~l~~l---~~~~~~~~~L~~L~ 95 (281)
+.++.++.. ++.+|. +..++ |++|+++++. ++.+|.. ++++++. +..+ +.....+++|++|+
T Consensus 10 ~~l~c~~~~-l~~ip~-~~~~~-l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKG-LTSVPT-GIPSS-ATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp TEEECCSSC-CSSCCS-CCCTT-CCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEE
T ss_pred CEEEcCCCC-cccCCC-CCCCC-CCEEECCCCc-cCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEE
Confidence 456666543 667775 22345 9999999976 4555542 6666543 2222 23333467899999
Q ss_pred eccCcccccccccCcCCCCccEEeecCCcCCcccCC---CCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCC
Q 023528 96 IWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPE---DGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGC 172 (281)
Q Consensus 96 l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 172 (281)
+++| .+..+|..+..+++|++|+++++ .+..++. ...+++|+.|++++|.. .......+..+++|++|++++ +
T Consensus 85 Ls~n-~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~-n 160 (306)
T 2z66_A 85 LSFN-GVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHT-RVAFNGIFNGLSSLEVLKMAG-N 160 (306)
T ss_dssp CCSC-SEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCC-EECSTTTTTTCTTCCEEECTT-C
T ss_pred CCCC-ccccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcC-CccchhhcccCcCCCEEECCC-C
Confidence 9995 45667777888999999999884 4555543 35678999999998654 333334678889999999998 4
Q ss_pred CCCcc--CCC---CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCC--CCCCCCcEEecCCCchHH
Q 023528 173 PDLVS--SPR---FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQ--GLPKSLLRLGIDDCPLME 244 (281)
Q Consensus 173 ~~~~~--~~~---~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~--~~~~~L~~L~l~~c~~l~ 244 (281)
.+.. ++. ..++|+.|++++ +.++.++... ..+++|++|++++| .+..++.. ..+++|++|+++++....
T Consensus 161 -~l~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 161 -SFQENFLPDIFTELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp -EEGGGEECSCCTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred -ccccccchhHHhhCcCCCEEECCC-CCcCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCCCcc
Confidence 3432 343 567899999999 4677764344 88899999999995 56666542 236899999999886321
Q ss_pred HHHhhcCCCCCccccccccc-ccccEEEECCEEee
Q 023528 245 KRWIKADYPYTFATRYWPMI-THIPCVIVNGRFVF 278 (281)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~ 278 (281)
.. . ..+..+ ..+..+.+.|+.+.
T Consensus 238 ~~-----~------~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 238 SK-----K------QELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CS-----S------SSCCCCCTTCCEEECTTCCEE
T ss_pred cC-----H------HHHHhhhccCCEEEccCCCee
Confidence 11 0 122333 36777888776654
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.70 E-value=9.5e-16 Score=140.45 Aligned_cols=151 Identities=16% Similarity=0.150 Sum_probs=95.7
Q ss_pred CCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCC----CCCCCCcCeEEecCCCCccccchhhhccCCC
Q 023528 87 PSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPE----DGFPTNLQSLVVDDLKISKPLFEWGLDRFAC 162 (281)
Q Consensus 87 ~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 162 (281)
.+++|++|++++|.....+|..+..+++|++|+++++ .++.++. ...+++|+.|++++|.....++...+..+++
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 3455666666665433334555666666666666653 3333321 2455667777776644333355444566677
Q ss_pred cceEEeecCCCCCccCCC-CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCC--CCCCCCcEEecCC
Q 023528 163 LRELRIRGGCPDLVSSPR-FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQ--GLPKSLLRLGIDD 239 (281)
Q Consensus 163 L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~--~~~~~L~~L~l~~ 239 (281)
|++|++++ +.-...++. .+++|+.|++++ +.++.+|.....+++|++|++++| +++.+|.. ..+++|++|++.+
T Consensus 430 L~~L~l~~-n~l~~~~~~~l~~~L~~L~L~~-N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~ 506 (562)
T 3a79_B 430 ILVLNLSS-NMLTGSVFRCLPPKVKVLDLHN-NRIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHD 506 (562)
T ss_dssp CCEEECCS-SCCCGGGGSSCCTTCSEEECCS-SCCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCS
T ss_pred CCEEECCC-CCCCcchhhhhcCcCCEEECCC-CcCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecC
Confidence 77777776 433333333 336889999998 578888855578889999999984 67778764 2367889999887
Q ss_pred Cc
Q 023528 240 CP 241 (281)
Q Consensus 240 c~ 241 (281)
++
T Consensus 507 N~ 508 (562)
T 3a79_B 507 NP 508 (562)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.70 E-value=1.8e-15 Score=135.14 Aligned_cols=193 Identities=20% Similarity=0.095 Sum_probs=114.4
Q ss_pred ccceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccc-------eeecC
Q 023528 2 KQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER-------IWIFG 74 (281)
Q Consensus 2 ~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~-------L~l~~ 74 (281)
++++.|+++++ .++.+ |.....++|++|++++|. +..++ ++.+++ |++|+++++. +..++-+ +++++
T Consensus 42 ~~L~~L~Ls~n-~l~~~-~~l~~l~~L~~L~Ls~n~-l~~~~-~~~l~~-L~~L~Ls~N~-l~~~~~~~l~~L~~L~L~~ 115 (457)
T 3bz5_A 42 ATLTSLDCHNS-SITDM-TGIEKLTGLTKLICTSNN-ITTLD-LSQNTN-LTYLACDSNK-LTNLDVTPLTKLTYLNCDT 115 (457)
T ss_dssp TTCCEEECCSS-CCCCC-TTGGGCTTCSEEECCSSC-CSCCC-CTTCTT-CSEEECCSSC-CSCCCCTTCTTCCEEECCS
T ss_pred CCCCEEEccCC-CcccC-hhhcccCCCCEEEccCCc-CCeEc-cccCCC-CCEEECcCCC-CceeecCCCCcCCEEECCC
Confidence 56777788775 46666 322233688888888776 66665 677788 8888888765 3333322 66666
Q ss_pred CCCCccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccch
Q 023528 75 CPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFE 154 (281)
Q Consensus 75 ~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~ 154 (281)
+ .+..++ +..+++|++|++++| .++.+ .+..+++|++|+++++..++.++ ...+++|+.|++++| .++.++
T Consensus 116 N-~l~~l~--~~~l~~L~~L~l~~N-~l~~l--~l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~ls~n-~l~~l~- 186 (457)
T 3bz5_A 116 N-KLTKLD--VSQNPLLTYLNCARN-TLTEI--DVSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFN-KITELD- 186 (457)
T ss_dssp S-CCSCCC--CTTCTTCCEEECTTS-CCSCC--CCTTCTTCCEEECTTCSCCCCCC-CTTCTTCCEEECCSS-CCCCCC-
T ss_pred C-cCCeec--CCCCCcCCEEECCCC-cccee--ccccCCcCCEEECCCCCcccccc-cccCCcCCEEECCCC-ccceec-
Confidence 5 344454 556778888888885 44445 36677888888888765665552 456678888888774 344443
Q ss_pred hhhccCCCcceEEeecCCCCCccCCC-CCCCccEEeccCCCCCccccccCCCCCCcCEEeccC
Q 023528 155 WGLDRFACLRELRIRGGCPDLVSSPR-FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSN 216 (281)
Q Consensus 155 ~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 216 (281)
+..+++|+.|++++ +.++.++. ..++|+.|++++ +.++.+| .+.+++|++|++++
T Consensus 187 --l~~l~~L~~L~l~~--N~l~~~~l~~l~~L~~L~Ls~-N~l~~ip--~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 187 --VSQNKLLNRLNCDT--NNITKLDLNQNIQLTFLDCSS-NKLTEID--VTPLTQLTYFDCSV 242 (457)
T ss_dssp --CTTCTTCCEEECCS--SCCSCCCCTTCTTCSEEECCS-SCCSCCC--CTTCTTCSEEECCS
T ss_pred --cccCCCCCEEECcC--CcCCeeccccCCCCCEEECcC-CcccccC--ccccCCCCEEEeeC
Confidence 45556666666665 23333322 233455555555 2344443 23344444444444
No 38
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.70 E-value=4.5e-16 Score=141.18 Aligned_cols=105 Identities=17% Similarity=0.142 Sum_probs=58.2
Q ss_pred CCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC-CCCCccEEeccCCCCCccccccCCCCCCcCEE
Q 023528 134 FPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR-FPASLTQLGISDMPTLKCLSSVGENLTSLETL 212 (281)
Q Consensus 134 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L 212 (281)
.+++|++|++++|.....++...+..+++|++|++++ +.-...++. .+++|+.|++++ +.++.+|.....+++|++|
T Consensus 372 ~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L 449 (520)
T 2z7x_B 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS-NILTDTIFRCLPPRIKVLDLHS-NKIKSIPKQVVKLEALQEL 449 (520)
T ss_dssp TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCS-SCCCGGGGGSCCTTCCEEECCS-SCCCCCCGGGGGCTTCCEE
T ss_pred hCCCCCEEECCCCcCCcccccchhccCccCCEEECcC-CCCCcchhhhhcccCCEEECCC-CcccccchhhhcCCCCCEE
Confidence 3445555555543322224333344455555555555 322222222 335777777777 4666777444677777777
Q ss_pred eccCCCCcccccCCC--CCCCCcEEecCCCc
Q 023528 213 DLSNCPKLKYFSKQG--LPKSLLRLGIDDCP 241 (281)
Q Consensus 213 ~l~~c~~l~~i~~~~--~~~~L~~L~l~~c~ 241 (281)
++++| .++.+|... .+++|++|++++++
T Consensus 450 ~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 450 NVASN-QLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCC-cCCccCHHHhccCCcccEEECcCCC
Confidence 77774 566666532 25677777777654
No 39
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.70 E-value=3.4e-15 Score=133.24 Aligned_cols=33 Identities=30% Similarity=0.190 Sum_probs=16.5
Q ss_pred CcCceeeccCCcCccccccCCCcCCcCcEEEecCC
Q 023528 26 ATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDC 60 (281)
Q Consensus 26 ~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~ 60 (281)
++|++|++++|. +..+|.++.+++ |++|+++++
T Consensus 131 ~~L~~L~L~~n~-l~~lp~~~~l~~-L~~L~l~~N 163 (454)
T 1jl5_A 131 PLLEYLGVSNNQ-LEKLPELQNSSF-LKIIDVDNN 163 (454)
T ss_dssp TTCCEEECCSSC-CSSCCCCTTCTT-CCEEECCSS
T ss_pred CCCCEEECcCCC-CCCCcccCCCCC-CCEEECCCC
Confidence 345555555443 334444555555 555555554
No 40
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=7.3e-16 Score=146.92 Aligned_cols=230 Identities=17% Similarity=0.103 Sum_probs=156.2
Q ss_pred CccceeecccCCCCCcc------------------cCCCCC--ccCcCceeeccCCcCcccccc-CCCcCCcCcEEEecC
Q 023528 1 MKQDISRSSSGSTSRTP------------------FSSENE--LPATLEHLEVTHCSNLAFLSW-NGNLPRALKYLYVKD 59 (281)
Q Consensus 1 ~~~l~~l~~~~~~~l~~------------------~~~~~~--~~~~L~~L~l~~~~~l~~l~~-~~~l~~~L~~L~l~~ 59 (281)
|++|+.|+++++. ++. +|+... -.++|++|++++|.....+|. ++.+++ |++|++++
T Consensus 447 L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~-L~~L~Ls~ 524 (876)
T 4ecn_A 447 LTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE-LQSLNIAC 524 (876)
T ss_dssp CTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSS-CCEEECTT
T ss_pred CCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCC-CCEEECcC
Confidence 5688999999866 665 744433 347999999999986777775 888999 99999999
Q ss_pred Ccchh--cccc-------------c---eeecCCCCCccCCC--CCCCCCCccEEEeccCcccccccccCcCCCCccEEe
Q 023528 60 CSKLE--SLAE-------------R---IWIFGCPNLESFPE--GGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLE 119 (281)
Q Consensus 60 ~~~l~--~~p~-------------~---L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~ 119 (281)
+..+. .+|. . |+++++. +..+|. .+..+++|+.|++++|. +..+| .+..+++|+.|+
T Consensus 525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~ 601 (876)
T 4ecn_A 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLK 601 (876)
T ss_dssp CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEEE
T ss_pred CCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCCcceEEE
Confidence 87232 3432 1 7887764 448888 78889999999999965 45888 889999999999
Q ss_pred ecCCcCCcccCCC-CCCCC-cCeEEecCCCCccccchhhhccCC--CcceEEeecCCCCCccCCC--------CCCCccE
Q 023528 120 IRECRSLVSFPED-GFPTN-LQSLVVDDLKISKPLFEWGLDRFA--CLRELRIRGGCPDLVSSPR--------FPASLTQ 187 (281)
Q Consensus 120 l~~~~~l~~l~~~-~~~~~-L~~L~l~~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~~~--------~~~~L~~ 187 (281)
++++ .+..+|.. ..+++ |+.|++++|. ++.+|. .+...+ +|+.|++++ +.-...+|. ...+|+.
T Consensus 602 Ls~N-~l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~-~~~~~~~~~L~~L~Ls~-N~l~g~ip~l~~~l~~~~~~~L~~ 677 (876)
T 4ecn_A 602 LDYN-QIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPN-IFNAKSVYVMGSVDFSY-NKIGSEGRNISCSMDDYKGINAST 677 (876)
T ss_dssp CCSS-CCSCCCTTSCEECTTCCEEECCSSC-CCSCCS-CCCTTCSSCEEEEECCS-SCTTTTSSSCSSCTTTCCCCCEEE
T ss_pred CcCC-ccccchHHHhhccccCCEEECcCCC-CCcCch-hhhccccCCCCEEECcC-CcCCCccccchhhhccccCCCcCE
Confidence 9985 45577754 55667 9999999865 445553 344443 378888877 433222221 1235667
Q ss_pred EeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCCCC--C-------CCCcEEecCCCc
Q 023528 188 LGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQGL--P-------KSLLRLGIDDCP 241 (281)
Q Consensus 188 L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~~~--~-------~~L~~L~l~~c~ 241 (281)
|++++ +.+..+|..+ ..+++|++|++++| .+..+|.... . ++|++|++++|.
T Consensus 678 L~Ls~-N~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~ 739 (876)
T 4ecn_A 678 VTLSY-NEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK 739 (876)
T ss_dssp EECCS-SCCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC
T ss_pred EEccC-CcCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCCC
Confidence 77776 3555666444 45666666666664 4555554222 1 156666666654
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.69 E-value=1.3e-15 Score=130.50 Aligned_cols=202 Identities=17% Similarity=0.256 Sum_probs=110.7
Q ss_pred cCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhcccc-c---------eeecCCCCCccCCCCCCCCCCccEEEe
Q 023528 27 TLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAE-R---------IWIFGCPNLESFPEGGLPSTKLTRLTI 96 (281)
Q Consensus 27 ~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~-~---------L~l~~~~~l~~l~~~~~~~~~L~~L~l 96 (281)
.++.++++++. +..+|. .-.++ |++|+++++. +..++. . ++++++.-....+..+..+++|++|++
T Consensus 34 ~l~~l~~~~~~-l~~ip~-~~~~~-l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLG-LKAVPK-EISPD-TTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSC-CSSCCS-CCCTT-CCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCC-ccccCC-CCCCC-CeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 79999999876 777775 22356 9999999975 333322 1 566555322222445555667777777
Q ss_pred ccCcccccccccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCcc-ccchhhhccCCCcceEEeecCCC
Q 023528 97 WKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISK-PLFEWGLDRFACLRELRIRGGCP 173 (281)
Q Consensus 97 ~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~ 173 (281)
++| .+..+|..+. ++|++|+++++ .+..++.. ..+++|++|++++|..-. ......+..+ +|++|++++ +
T Consensus 110 ~~n-~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~--n 182 (332)
T 2ft3_A 110 SKN-HLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE--A 182 (332)
T ss_dssp CSS-CCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS--S
T ss_pred CCC-cCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC--C
Confidence 764 4455655443 67777777663 44444432 456677777777654321 1222233334 555555554 3
Q ss_pred CCccCCC-CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCC--CCCCCCcEEecCCCc
Q 023528 174 DLVSSPR-FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQ--GLPKSLLRLGIDDCP 241 (281)
Q Consensus 174 ~~~~~~~-~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~--~~~~~L~~L~l~~c~ 241 (281)
.++.+|. .+++|++|++++ +.++.++... ..+++|++|++++| .++.++.. ..+++|++|++++|.
T Consensus 183 ~l~~l~~~~~~~L~~L~l~~-n~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 252 (332)
T 2ft3_A 183 KLTGIPKDLPETLNELHLDH-NKIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNK 252 (332)
T ss_dssp BCSSCCSSSCSSCSCCBCCS-SCCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred CCCccCccccCCCCEEECCC-CcCCccCHHHhcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCCc
Confidence 3444443 334566666666 3444444222 55566666666653 34444331 124556666665553
No 42
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.69 E-value=4.6e-15 Score=136.90 Aligned_cols=56 Identities=25% Similarity=0.287 Sum_probs=28.4
Q ss_pred ceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccc
Q 023528 4 DISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLA 67 (281)
Q Consensus 4 l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p 67 (281)
+..+++++ ..++.+ |.. ++++|++|++++|. +..+|. .+++ |++|++++|. ++.+|
T Consensus 42 l~~L~ls~-n~L~~l-p~~-l~~~L~~L~L~~N~-l~~lp~--~l~~-L~~L~Ls~N~-l~~lp 97 (622)
T 3g06_A 42 NAVLNVGE-SGLTTL-PDC-LPAHITTLVIPDNN-LTSLPA--LPPE-LRTLEVSGNQ-LTSLP 97 (622)
T ss_dssp CCEEECCS-SCCSCC-CSC-CCTTCSEEEECSCC-CSCCCC--CCTT-CCEEEECSCC-CSCCC
T ss_pred CcEEEecC-CCcCcc-Chh-hCCCCcEEEecCCC-CCCCCC--cCCC-CCEEEcCCCc-CCcCC
Confidence 44555554 335555 322 22466666666554 555554 3444 6666666654 33443
No 43
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.69 E-value=8.6e-16 Score=137.60 Aligned_cols=91 Identities=13% Similarity=0.116 Sum_probs=49.7
Q ss_pred ccceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccc--------eeec
Q 023528 2 KQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER--------IWIF 73 (281)
Q Consensus 2 ~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~--------L~l~ 73 (281)
+++++|++.++. ++.+ +.....++|++|++++|. +..++.++.+++ |++|+++++.. ..++.. ++++
T Consensus 46 ~~l~~L~l~~~~-i~~l-~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~-L~~L~l~~n~l-~~~~~~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 46 DQVTTLQADRLG-IKSI-DGVEYLNNLTQINFSNNQ-LTDITPLKNLTK-LVDILMNNNQI-ADITPLANLTNLTGLTLF 120 (466)
T ss_dssp HTCCEEECCSSC-CCCC-TTGGGCTTCCEEECCSSC-CCCCGGGTTCTT-CCEEECCSSCC-CCCGGGTTCTTCCEEECC
T ss_pred ccccEEecCCCC-CccC-cchhhhcCCCEEECCCCc-cCCchhhhcccc-CCEEECCCCcc-ccChhhcCCCCCCEEECC
Confidence 356667776643 5556 333333577777777765 555555666777 77777776542 222111 5555
Q ss_pred CCCCCccCCCCCCCCCCccEEEeccC
Q 023528 74 GCPNLESFPEGGLPSTKLTRLTIWKC 99 (281)
Q Consensus 74 ~~~~l~~l~~~~~~~~~L~~L~l~~c 99 (281)
++ .+..++. ...+++|++|++++|
T Consensus 121 ~n-~l~~~~~-~~~l~~L~~L~l~~n 144 (466)
T 1o6v_A 121 NN-QITDIDP-LKNLTNLNRLELSSN 144 (466)
T ss_dssp SS-CCCCCGG-GTTCTTCSEEEEEEE
T ss_pred CC-CCCCChH-HcCCCCCCEEECCCC
Confidence 44 2333332 344556666666654
No 44
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.69 E-value=8.3e-16 Score=137.71 Aligned_cols=146 Identities=23% Similarity=0.206 Sum_probs=69.2
Q ss_pred CCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccch------------
Q 023528 87 PSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFE------------ 154 (281)
Q Consensus 87 ~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~------------ 154 (281)
.+++|++|++++|. +..++ .+..+++|++|+++++. +..++..+.+++|+.|++++|. ++.++.
T Consensus 175 ~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l 250 (466)
T 1o6v_A 175 NLTTLERLDISSNK-VSDIS-VLAKLTNLESLIATNNQ-ISDITPLGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDL 250 (466)
T ss_dssp TCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSC-CCCCGGGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEEC
T ss_pred cCCCCCEEECcCCc-CCCCh-hhccCCCCCEEEecCCc-ccccccccccCCCCEEECCCCC-cccchhhhcCCCCCEEEC
Confidence 35566666666643 33332 34455555666555532 2222222334445555554432 222220
Q ss_pred --------hhhccCCCcceEEeecCCCCCccCCC--CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCccccc
Q 023528 155 --------WGLDRFACLRELRIRGGCPDLVSSPR--FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFS 224 (281)
Q Consensus 155 --------~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~ 224 (281)
..+..+++|++|++++ + .+..++. ..++|+.|++++ +.++.++ ..+.+++|++|++++| .+..++
T Consensus 251 ~~n~l~~~~~~~~l~~L~~L~l~~-n-~l~~~~~~~~l~~L~~L~L~~-n~l~~~~-~~~~l~~L~~L~L~~n-~l~~~~ 325 (466)
T 1o6v_A 251 ANNQISNLAPLSGLTKLTELKLGA-N-QISNISPLAGLTALTNLELNE-NQLEDIS-PISNLKNLTYLTLYFN-NISDIS 325 (466)
T ss_dssp CSSCCCCCGGGTTCTTCSEEECCS-S-CCCCCGGGTTCTTCSEEECCS-SCCSCCG-GGGGCTTCSEEECCSS-CCSCCG
T ss_pred CCCccccchhhhcCCCCCEEECCC-C-ccCccccccCCCccCeEEcCC-CcccCch-hhcCCCCCCEEECcCC-cCCCch
Confidence 0134444455555544 2 2222222 344566666666 3444444 2355666666666664 344443
Q ss_pred CCCCCCCCcEEecCCCc
Q 023528 225 KQGLPKSLLRLGIDDCP 241 (281)
Q Consensus 225 ~~~~~~~L~~L~l~~c~ 241 (281)
....+++|++|++.+|.
T Consensus 326 ~~~~l~~L~~L~l~~n~ 342 (466)
T 1o6v_A 326 PVSSLTKLQRLFFYNNK 342 (466)
T ss_dssp GGGGCTTCCEEECCSSC
T ss_pred hhccCccCCEeECCCCc
Confidence 33335677777777664
No 45
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.69 E-value=2.2e-15 Score=126.76 Aligned_cols=190 Identities=20% Similarity=0.127 Sum_probs=137.2
Q ss_pred CccceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccc--cCCCcCCcCcEEEecCCcchhccccceeecCCCCC
Q 023528 1 MKQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLS--WNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNL 78 (281)
Q Consensus 1 ~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l 78 (281)
++++++++.++ ..++.+ |.+ +++++++|+++++. +..++ .+..+++ |++|+++++. +..+
T Consensus 9 l~~l~~l~~~~-~~l~~i-p~~-~~~~l~~L~L~~N~-l~~~~~~~~~~l~~-L~~L~L~~n~-l~~~------------ 70 (290)
T 1p9a_G 9 VASHLEVNCDK-RNLTAL-PPD-LPKDTTILHLSENL-LYTFSLATLMPYTR-LTQLNLDRAE-LTKL------------ 70 (290)
T ss_dssp STTCCEEECTT-SCCSSC-CSC-CCTTCCEEECTTSC-CSEEEGGGGTTCTT-CCEEECTTSC-CCEE------------
T ss_pred cCCccEEECCC-CCCCcC-CCC-CCCCCCEEEcCCCc-CCccCHHHhhcCCC-CCEEECCCCc-cCcc------------
Confidence 35677888876 558888 543 44699999999887 55553 3778888 9999998864 3322
Q ss_pred ccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhh
Q 023528 79 ESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWG 156 (281)
Q Consensus 79 ~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~ 156 (281)
+.. ..+++|++|+++++ .+..+|..+..+++|++|+++++ .++.++.. ..+++|+.|++++| .++.++...
T Consensus 71 ---~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~ 143 (290)
T 1p9a_G 71 ---QVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGN-ELKTLPPGL 143 (290)
T ss_dssp ---ECC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTT
T ss_pred ---cCC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCC-CCCccChhh
Confidence 221 34668999999885 56678877888889999999874 56666543 56788888888884 555666556
Q ss_pred hccCCCcceEEeecCCCCCccCCC----CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCC
Q 023528 157 LDRFACLRELRIRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCP 218 (281)
Q Consensus 157 ~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 218 (281)
+..+++|+.|++++ +.++.++. ..++|+.|++++ +.++.+|..+....+|+++++++++
T Consensus 144 ~~~l~~L~~L~L~~--N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 144 LTPTPKLEKLSLAN--NNLTELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTTCTTCCEEECTT--SCCSCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred cccccCCCEEECCC--CcCCccCHHHhcCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCCC
Confidence 77888888888887 55666664 356788888888 5788888555666788888888753
No 46
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.68 E-value=2.8e-15 Score=140.23 Aligned_cols=190 Identities=17% Similarity=0.159 Sum_probs=108.5
Q ss_pred CCCcCCcCcEEEecCCcchhccccc----------eeecCCCCCccCCCCCCCCCCccEEEeccCcc--cccccccCcCC
Q 023528 45 NGNLPRALKYLYVKDCSKLESLAER----------IWIFGCPNLESFPEGGLPSTKLTRLTIWKCKN--LKALPNCIHNL 112 (281)
Q Consensus 45 ~~~l~~~L~~L~l~~~~~l~~~p~~----------L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~--l~~lp~~~~~l 112 (281)
+..+++ |++|+++++...+.+|.. ++++++......+..+..+++|++|++++|.. +..+|..+..+
T Consensus 401 ~~~l~~-L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l 479 (680)
T 1ziw_A 401 FSWLGH-LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479 (680)
T ss_dssp TTTCTT-CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTC
T ss_pred hhCCCC-CCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccC
Confidence 445556 666666665533333211 45555432222233444456667776666532 23456666777
Q ss_pred CCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccc--------hhhhccCCCcceEEeecCCCCCccCCC--
Q 023528 113 TSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLF--------EWGLDRFACLRELRIRGGCPDLVSSPR-- 180 (281)
Q Consensus 113 ~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~--------~~~~~~l~~L~~L~l~~~~~~~~~~~~-- 180 (281)
++|++|+++++ .+..++.. ..+++|+.|++++|.. +.++ ...+..+++|+.|++++ +.++.+|.
T Consensus 480 ~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~~~~~~~l~~L~~L~L~~--N~l~~i~~~~ 555 (680)
T 1ziw_A 480 RNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNNL-ARLWKHANPGGPIYFLKGLSHLHILNLES--NGFDEIPVEV 555 (680)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC-GGGGSTTSTTSCCCTTTTCTTCCEEECCS--SCCCCCCTTT
T ss_pred CCCCEEECCCC-CCCcCChhhhccccccCEEeCCCCCc-cccchhhccCCcchhhcCCCCCCEEECCC--CCCCCCCHHH
Confidence 77777777764 44444432 4566777777777432 2221 11256667777777776 45555553
Q ss_pred --CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCCC---CCCCCcEEecCCCc
Q 023528 181 --FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQG---LPKSLLRLGIDDCP 241 (281)
Q Consensus 181 --~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~~---~~~~L~~L~l~~c~ 241 (281)
..++|+.|++++ +.++.+|... ..+++|++|++++| .++.++... .+++|+.+++.+++
T Consensus 556 ~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 556 FKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred cccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCC
Confidence 345677777776 5677776554 66777777777774 555555421 24667777776654
No 47
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.68 E-value=3.5e-15 Score=125.01 Aligned_cols=195 Identities=19% Similarity=0.185 Sum_probs=145.4
Q ss_pred ccceeecccCCCCCcccCCCCCc--cCcCceeeccCCcCccccc--cCCCcCCcCcEEEecCCcchhccccceeecCCCC
Q 023528 2 KQDISRSSSGSTSRTPFSSENEL--PATLEHLEVTHCSNLAFLS--WNGNLPRALKYLYVKDCSKLESLAERIWIFGCPN 77 (281)
Q Consensus 2 ~~l~~l~~~~~~~l~~~~~~~~~--~~~L~~L~l~~~~~l~~l~--~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~ 77 (281)
++++.|+++++. ++.+ +...+ .++|++|+++++. +..++ .++.+++ |++|+++++..++.++
T Consensus 32 ~~l~~L~l~~n~-i~~~-~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~-L~~L~l~~n~~l~~~~---------- 97 (285)
T 1ozn_A 32 AASQRIFLHGNR-ISHV-PAASFRACRNLTILWLHSNV-LARIDAAAFTGLAL-LEQLDLSDNAQLRSVD---------- 97 (285)
T ss_dssp TTCSEEECTTSC-CCEE-CTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTT-CCEEECCSCTTCCCCC----------
T ss_pred CCceEEEeeCCc-CCcc-CHHHcccCCCCCEEECCCCc-cceeCHhhcCCccC-CCEEeCCCCCCccccC----------
Confidence 467889998754 7777 43322 3699999999886 66553 3788999 9999998865333321
Q ss_pred CccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchh
Q 023528 78 LESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEW 155 (281)
Q Consensus 78 l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~ 155 (281)
+..+..+++|++|++++|......|..+..+++|++|+++++ .+..++.. ..+++|+.|++++| .++.++..
T Consensus 98 ----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~ 171 (285)
T 1ozn_A 98 ----PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGN-RISSVPER 171 (285)
T ss_dssp ----TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCEECTT
T ss_pred ----HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCC-cccccCHH
Confidence 334455779999999997544444567889999999999985 55566543 56889999999985 56666655
Q ss_pred hhccCCCcceEEeecCCCCCccC-CC---CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCC
Q 023528 156 GLDRFACLRELRIRGGCPDLVSS-PR---FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPK 219 (281)
Q Consensus 156 ~~~~l~~L~~L~l~~~~~~~~~~-~~---~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~ 219 (281)
.+..+++|++|++++ + .+..+ +. ..++|+.|++++ +.++.++... ..+++|++|++++++-
T Consensus 172 ~~~~l~~L~~L~l~~-n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQ-N-RVAHVHPHAFRDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp TTTTCTTCCEEECCS-S-CCCEECTTTTTTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred HhcCccccCEEECCC-C-cccccCHhHccCcccccEeeCCC-CcCCcCCHHHcccCcccCEEeccCCCc
Confidence 688899999999998 4 44444 33 456899999999 5787777554 8899999999999653
No 48
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.67 E-value=4.5e-16 Score=132.55 Aligned_cols=147 Identities=14% Similarity=0.103 Sum_probs=97.0
Q ss_pred CCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceE
Q 023528 89 TKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLREL 166 (281)
Q Consensus 89 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 166 (281)
++|++|++++| .+..++. ..+++|++|+++++ .+..++.. ..+++|+.|++++|......+......+++|++|
T Consensus 99 ~~L~~L~l~~n-~l~~~~~--~~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 174 (317)
T 3o53_A 99 PSIETLHAANN-NISRVSC--SRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174 (317)
T ss_dssp TTCCEEECCSS-CCSEEEE--CCCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred CCcCEEECCCC-ccCCcCc--cccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEE
Confidence 57888888875 3444432 23677888888874 44444332 4567888888888544333332223467888888
Q ss_pred EeecCCCCCccCCC--CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCC-CCCCCCcEEecCCCchH
Q 023528 167 RIRGGCPDLVSSPR--FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQ-GLPKSLLRLGIDDCPLM 243 (281)
Q Consensus 167 ~l~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~-~~~~~L~~L~l~~c~~l 243 (281)
++++ +.++.++. ..++|++|++++ +.++.+|..+..+++|++|++++| .++.+|.. ..+++|++|++++++..
T Consensus 175 ~L~~--N~l~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 175 NLQY--NFIYDVKGQVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp ECTT--SCCCEEECCCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred ECCC--CcCcccccccccccCCEEECCC-CcCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCcc
Confidence 8887 44555544 466888888888 577777755677788888888885 66677652 33578888888877643
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.67 E-value=2.7e-16 Score=133.68 Aligned_cols=211 Identities=14% Similarity=0.112 Sum_probs=129.1
Q ss_pred CcCceeeccCCcCcc--cccc-CCCcCCcCcEEEecC-Ccchhccccc---------eeecCCCCCccCCCCCCCCCCcc
Q 023528 26 ATLEHLEVTHCSNLA--FLSW-NGNLPRALKYLYVKD-CSKLESLAER---------IWIFGCPNLESFPEGGLPSTKLT 92 (281)
Q Consensus 26 ~~L~~L~l~~~~~l~--~l~~-~~~l~~~L~~L~l~~-~~~l~~~p~~---------L~l~~~~~l~~l~~~~~~~~~L~ 92 (281)
.+++.|+++++.--. .+|. ++.+++ |++|++++ +...+.+|.. ++++++.....+|..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~-L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPY-LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTT-CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCC-CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 479999999987333 4554 788999 99999996 4433344433 66666544345666666677777
Q ss_pred EEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC-CCCC-CcCeEEecCCCCccccchhhhccCCCcceEEeec
Q 023528 93 RLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED-GFPT-NLQSLVVDDLKISKPLFEWGLDRFACLRELRIRG 170 (281)
Q Consensus 93 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 170 (281)
+|++++|.....+|..+..+++|++|+++++.....+|.. ..++ +|+.|++++|......+. .+..++ |++|++++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~-~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP-TFANLN-LAFVDLSR 206 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG-GGGGCC-CSEEECCS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCCh-HHhCCc-ccEEECcC
Confidence 7777776544456667777777777777775333344433 3333 777777777543334432 455555 77777776
Q ss_pred CCCCCccCCC---CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccC-CCCCCCCcEEecCCCc
Q 023528 171 GCPDLVSSPR---FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSK-QGLPKSLLRLGIDDCP 241 (281)
Q Consensus 171 ~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~-~~~~~~L~~L~l~~c~ 241 (281)
+.-....+. ..++|+.|+++++ .+...+.....+++|++|++++|.-.+.+|. ...+++|++|+++++.
T Consensus 207 -N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 207 -NMLEGDASVLFGSDKNTQKIHLAKN-SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp -SEEEECCGGGCCTTSCCSEEECCSS-EECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred -CcccCcCCHHHhcCCCCCEEECCCC-ceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence 322222222 4557777777774 4443322456667777777777543334443 2235677777777775
No 50
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.67 E-value=5.9e-15 Score=136.18 Aligned_cols=231 Identities=26% Similarity=0.295 Sum_probs=171.6
Q ss_pred ccceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccc------eeecCC
Q 023528 2 KQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER------IWIFGC 75 (281)
Q Consensus 2 ~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~------L~l~~~ 75 (281)
++++.|+++++. ++.+ |. .+++|++|++++|. +..+|. .+++ |++|++++|. +..+|.. |+++++
T Consensus 61 ~~L~~L~L~~N~-l~~l-p~--~l~~L~~L~Ls~N~-l~~lp~--~l~~-L~~L~Ls~N~-l~~l~~~l~~L~~L~L~~N 131 (622)
T 3g06_A 61 AHITTLVIPDNN-LTSL-PA--LPPELRTLEVSGNQ-LTSLPV--LPPG-LLELSIFSNP-LTHLPALPSGLCKLWIFGN 131 (622)
T ss_dssp TTCSEEEECSCC-CSCC-CC--CCTTCCEEEECSCC-CSCCCC--CCTT-CCEEEECSCC-CCCCCCCCTTCCEEECCSS
T ss_pred CCCcEEEecCCC-CCCC-CC--cCCCCCEEEcCCCc-CCcCCC--CCCC-CCEEECcCCc-CCCCCCCCCCcCEEECCCC
Confidence 468889999864 8888 44 45799999999987 777776 6788 9999999975 4444433 777765
Q ss_pred CCCccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchh
Q 023528 76 PNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEW 155 (281)
Q Consensus 76 ~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~ 155 (281)
.+..+|.. +++|++|++++| .+..+|. .+.+|+.|+++++ .++.+| ..+++|+.|++++| .++.++.
T Consensus 132 -~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~---~~~~L~~L~L~~N-~l~~l~--~~~~~L~~L~Ls~N-~l~~l~~- 198 (622)
T 3g06_A 132 -QLTSLPVL---PPGLQELSVSDN-QLASLPA---LPSELCKLWAYNN-QLTSLP--MLPSGLQELSVSDN-QLASLPT- 198 (622)
T ss_dssp -CCSCCCCC---CTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCSCCC--CCCTTCCEEECCSS-CCSCCCC-
T ss_pred -CCCcCCCC---CCCCCEEECcCC-cCCCcCC---ccCCCCEEECCCC-CCCCCc--ccCCCCcEEECCCC-CCCCCCC-
Confidence 46667654 368999999996 5566654 3568888999884 666676 56789999999985 4555552
Q ss_pred hhccCCCcceEEeecCCCCCccCCCCCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCCCCCCCCcEE
Q 023528 156 GLDRFACLRELRIRGGCPDLVSSPRFPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKSLLRL 235 (281)
Q Consensus 156 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L 235 (281)
.+++|+.|++++ +.+..++..+++|+.|++++ +.++.+| ..+++|++|++++| .++.+|. .+++|++|
T Consensus 199 ---~~~~L~~L~L~~--N~l~~l~~~~~~L~~L~Ls~-N~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~--~~~~L~~L 266 (622)
T 3g06_A 199 ---LPSELYKLWAYN--NRLTSLPALPSGLKELIVSG-NRLTSLP---VLPSELKELMVSGN-RLTSLPM--LPSGLLSL 266 (622)
T ss_dssp ---CCTTCCEEECCS--SCCSSCCCCCTTCCEEECCS-SCCSCCC---CCCTTCCEEECCSS-CCSCCCC--CCTTCCEE
T ss_pred ---ccchhhEEECcC--CcccccCCCCCCCCEEEccC-CccCcCC---CCCCcCcEEECCCC-CCCcCCc--ccccCcEE
Confidence 357899999998 56777877778999999999 5788888 56789999999995 7888877 67899999
Q ss_pred ecCCCchHHHHHhhcCCCCCcccccccccccccEEEECCEEee
Q 023528 236 GIDDCPLMEKRWIKADYPYTFATRYWPMITHIPCVIVNGRFVF 278 (281)
Q Consensus 236 ~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 278 (281)
++++|..- .. ...+..+.++..+.+.++.+.
T Consensus 267 ~Ls~N~L~-~l-----------p~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 267 SVYRNQLT-RL-----------PESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp ECCSSCCC-SC-----------CGGGGGSCTTCEEECCSCCCC
T ss_pred eCCCCCCC-cC-----------CHHHhhccccCEEEecCCCCC
Confidence 99988532 11 122445566667777765543
No 51
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=1.1e-14 Score=121.14 Aligned_cols=185 Identities=26% Similarity=0.345 Sum_probs=90.5
Q ss_pred eecccCCCCCcccCCCCCccCcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCC
Q 023528 6 SRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPE 83 (281)
Q Consensus 6 ~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~ 83 (281)
.++.++ ..++.+ |. .+++++++|+++++. +..++. ++.+++ |++|+++++. +..++.
T Consensus 20 ~l~~~~-~~l~~i-p~-~~~~~l~~L~l~~n~-l~~~~~~~~~~l~~-L~~L~l~~n~----------------l~~i~~ 78 (270)
T 2o6q_A 20 SVDCSS-KKLTAI-PS-NIPADTKKLDLQSNK-LSSLPSKAFHRLTK-LRLLYLNDNK----------------LQTLPA 78 (270)
T ss_dssp EEECTT-SCCSSC-CS-CCCTTCSEEECCSSC-CSCCCTTSSSSCTT-CCEEECCSSC----------------CSCCCT
T ss_pred EEEccC-CCCCcc-CC-CCCCCCCEEECcCCC-CCeeCHHHhcCCCC-CCEEECCCCc----------------cCeeCh
Confidence 344443 335555 32 233466666666554 444442 555666 6666665532 222222
Q ss_pred CC-CCCCCccEEEeccCccccccc-ccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhcc
Q 023528 84 GG-LPSTKLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDR 159 (281)
Q Consensus 84 ~~-~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~ 159 (281)
.. ..+++|++|+++++. +..+| ..+..+++|++|+++++ .+..++.. ..+++|++|++++| .++.++...+..
T Consensus 79 ~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~ 155 (270)
T 2o6q_A 79 GIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDK 155 (270)
T ss_dssp TTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred hhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccC
Confidence 22 334566666666643 33343 23455666666666653 33333332 34556666666653 333444334555
Q ss_pred CCCcceEEeecCCCCCccCCC----CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCC
Q 023528 160 FACLRELRIRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNC 217 (281)
Q Consensus 160 l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c 217 (281)
+++|++|++++ +.+..++. ..++|+.|++++ +.++.+|... ..+++|++|+++++
T Consensus 156 l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 156 LTSLKELRLYN--NQLKRVPEGAFDKLTELKTLKLDN-NQLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp CTTCCEEECCS--SCCSCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CcccceeEecC--CcCcEeChhHhccCCCcCEEECCC-CcCCcCCHHHhccccCCCEEEecCC
Confidence 56666666655 23333332 234555555555 3444444332 44555555555553
No 52
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.67 E-value=1.2e-14 Score=139.30 Aligned_cols=118 Identities=16% Similarity=0.102 Sum_probs=62.2
Q ss_pred cceeecccCCCCCcccCCCCCcc--CcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccc---------
Q 023528 3 QDISRSSSGSTSRTPFSSENELP--ATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAER--------- 69 (281)
Q Consensus 3 ~l~~l~~~~~~~l~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~--------- 69 (281)
.++.|+++++. ++.+++ ..+. ++|++|++++|.....+++ ++.+++ |++|+++++......|..
T Consensus 25 ~l~~LdLs~N~-i~~i~~-~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~-L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 25 TTERLLLSFNY-IRTVTA-SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPN-LRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp TCCEEEEESCC-CCEECS-SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTT-CCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CcCEEECCCCc-CCccCh-hHCcccccCeEEeCCCCCCccccCHHHhcCCCC-CCEEECCCCcCcccCHhHccCCcccCE
Confidence 45566666533 444422 2222 4666666666644444422 566666 666666665422222322
Q ss_pred eeecCCCCCccCCCC--CCCCCCccEEEeccCccccccc-ccCcCCCCccEEeecCC
Q 023528 70 IWIFGCPNLESFPEG--GLPSTKLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIREC 123 (281)
Q Consensus 70 L~l~~~~~l~~l~~~--~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~ 123 (281)
|++++|.....++.. +..+++|++|++++|...+..+ ..+.++++|++|+++++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence 666665433333333 5556677777777754333222 35666777777777653
No 53
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.67 E-value=1.4e-15 Score=129.00 Aligned_cols=119 Identities=16% Similarity=0.161 Sum_probs=57.7
Q ss_pred CCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcceEE
Q 023528 88 STKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELR 167 (281)
Q Consensus 88 ~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 167 (281)
+++|++|++++|. +..++ .+..+++|++|+++++ .+..++....+++|+.|++++| .++.++. +..+++|+.|+
T Consensus 106 l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~ 179 (308)
T 1h6u_A 106 LQSIKTLDLTSTQ-ITDVT-PLAGLSNLQVLYLDLN-QITNISPLAGLTNLQYLSIGNA-QVSDLTP--LANLSKLTTLK 179 (308)
T ss_dssp CTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEE
T ss_pred CCCCCEEECCCCC-CCCch-hhcCCCCCCEEECCCC-ccCcCccccCCCCccEEEccCC-cCCCChh--hcCCCCCCEEE
Confidence 4455555555532 33333 2555555555555553 3333333344455555555553 3333332 45555555555
Q ss_pred eecCCCCCccCCC--CCCCccEEeccCCCCCccccccCCCCCCcCEEeccC
Q 023528 168 IRGGCPDLVSSPR--FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSN 216 (281)
Q Consensus 168 l~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 216 (281)
+++ +.+..++. ..++|++|++++ +.+..++ ....+++|++|++++
T Consensus 180 l~~--n~l~~~~~l~~l~~L~~L~L~~-N~l~~~~-~l~~l~~L~~L~l~~ 226 (308)
T 1h6u_A 180 ADD--NKISDISPLASLPNLIEVHLKN-NQISDVS-PLANTSNLFIVTLTN 226 (308)
T ss_dssp CCS--SCCCCCGGGGGCTTCCEEECTT-SCCCBCG-GGTTCTTCCEEEEEE
T ss_pred CCC--CccCcChhhcCCCCCCEEEccC-CccCccc-cccCCCCCCEEEccC
Confidence 555 23333332 334555555555 3444444 234555555555555
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.66 E-value=2.6e-15 Score=129.59 Aligned_cols=208 Identities=22% Similarity=0.151 Sum_probs=142.3
Q ss_pred cceeecccCCCCCcccCCCCCc--cCcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccc---------
Q 023528 3 QDISRSSSGSTSRTPFSSENEL--PATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAER--------- 69 (281)
Q Consensus 3 ~l~~l~~~~~~~l~~~~~~~~~--~~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~--------- 69 (281)
+++.|+++++. ++.+++ ..+ .++|++|+++++. +..++. ++.+++ |++|+++++. +..+|..
T Consensus 53 ~L~~L~l~~n~-i~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~-L~~L~Ls~n~-l~~~~~~~~~~l~~L~ 127 (353)
T 2z80_A 53 AVKSLDLSNNR-ITYISN-SDLQRCVNLQALVLTSNG-INTIEEDSFSSLGS-LEHLDLSYNY-LSNLSSSWFKPLSSLT 127 (353)
T ss_dssp TCCEEECTTSC-CCEECT-TTTTTCTTCCEEECTTSC-CCEECTTTTTTCTT-CCEEECCSSC-CSSCCHHHHTTCTTCS
T ss_pred cCcEEECCCCc-CcccCH-HHhccCCCCCEEECCCCc-cCccCHhhcCCCCC-CCEEECCCCc-CCcCCHhHhCCCccCC
Confidence 56777777644 666633 222 2588888888775 555533 677788 8888888764 3333321
Q ss_pred -eeecCCCCCccCCC--CCCCCCCccEEEeccCccccccc-ccCcCCCCccEEeecCCcCCcccCCC-CCCCCcCeEEec
Q 023528 70 -IWIFGCPNLESFPE--GGLPSTKLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVSFPED-GFPTNLQSLVVD 144 (281)
Q Consensus 70 -L~l~~~~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~ 144 (281)
++++++ .+..++. .+..+++|++|++++|..++.++ ..+..+++|++|+++++......+.. ..+++|++|+++
T Consensus 128 ~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 206 (353)
T 2z80_A 128 FLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206 (353)
T ss_dssp EEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred EEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC
Confidence 777765 4556665 55667888888888876565553 56778888888888875433332332 567788888888
Q ss_pred CCCCccccchhhhccCCCcceEEeecCCCCCccCCC-----------------------------------CCCCccEEe
Q 023528 145 DLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR-----------------------------------FPASLTQLG 189 (281)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-----------------------------------~~~~L~~L~ 189 (281)
+|. ++.++...+..+++|+.|++++ + .++.++. ..++|+.|+
T Consensus 207 ~n~-l~~~~~~~~~~~~~L~~L~L~~-n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~ 283 (353)
T 2z80_A 207 MKQ-HILLLEIFVDVTSSVECLELRD-T-DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELE 283 (353)
T ss_dssp CSC-STTHHHHHHHHTTTEEEEEEES-C-BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEE
T ss_pred CCc-cccchhhhhhhcccccEEECCC-C-ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEE
Confidence 854 4556554556688899999987 3 4433221 245899999
Q ss_pred ccCCCCCccccccC-CCCCCcCEEeccCCCCc
Q 023528 190 ISDMPTLKCLSSVG-ENLTSLETLDLSNCPKL 220 (281)
Q Consensus 190 l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l 220 (281)
+++ +.++.+|... +.+++|++|++++|+-.
T Consensus 284 Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 284 FSR-NQLKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp CCS-SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCC-CCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 999 5888999665 88999999999997533
No 55
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.66 E-value=6e-15 Score=122.96 Aligned_cols=208 Identities=18% Similarity=0.197 Sum_probs=146.0
Q ss_pred CCcccCCCCCccCcCceeeccCCcCccccc--cCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCc
Q 023528 14 SRTPFSSENELPATLEHLEVTHCSNLAFLS--WNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKL 91 (281)
Q Consensus 14 ~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L 91 (281)
+++.+ |. .++++|++|+++++. +..++ .++.+++ |++|+++++. +..++ +..+..+++|
T Consensus 18 ~l~~i-p~-~l~~~l~~L~ls~n~-l~~~~~~~~~~l~~-L~~L~l~~n~-l~~~~--------------~~~~~~l~~L 78 (276)
T 2z62_A 18 NFYKI-PD-NLPFSTKNLDLSFNP-LRHLGSYSFFSFPE-LQVLDLSRCE-IQTIE--------------DGAYQSLSHL 78 (276)
T ss_dssp CCSSC-CS-SSCTTCCEEECTTCC-CCEECTTTTTTCTT-CSEEECTTCC-CCEEC--------------TTTTTTCTTC
T ss_pred Ccccc-CC-CCCCCccEEECCCCc-ccccCHhHhccccC-CcEEECCCCc-CCccC--------------HHHccCCcCC
Confidence 35567 53 456799999999886 66665 4788999 9999999864 22221 1234456799
Q ss_pred cEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCC--CCCCCCcCeEEecCCCCcc-ccchhhhccCCCcceEEe
Q 023528 92 TRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPE--DGFPTNLQSLVVDDLKISK-PLFEWGLDRFACLRELRI 168 (281)
Q Consensus 92 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l 168 (281)
++|++++|......+..+..+++|++|+++++ .+..++. ...+++|++|++++|.... .++ ..+..+++|++|++
T Consensus 79 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~-~~~~~l~~L~~L~L 156 (276)
T 2z62_A 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDL 156 (276)
T ss_dssp CEEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCC-GGGGGCTTCCEEEC
T ss_pred CEEECCCCccCccChhhhcCCccccEEECCCC-CccccCchhcccCCCCCEEECcCCccceecCc-hhhccCCCCCEEEC
Confidence 99999996543333467889999999999885 4555544 3567899999999865433 234 36888999999999
Q ss_pred ecCCCCCccCCC----CCCCcc----EEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCCC--CCCCCcEEecC
Q 023528 169 RGGCPDLVSSPR----FPASLT----QLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQG--LPKSLLRLGID 238 (281)
Q Consensus 169 ~~~~~~~~~~~~----~~~~L~----~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~~--~~~~L~~L~l~ 238 (281)
++ +.++.++. ...+++ .|++++ +.++.++.......+|++|++++| .++.++... ..++|++|++.
T Consensus 157 s~--N~l~~~~~~~~~~l~~L~~l~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 157 SS--NKIQSIYCTDLRVLHQMPLLNLSLDLSL-NPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLH 232 (276)
T ss_dssp CS--SCCCEECGGGGHHHHTCTTCCEEEECCS-SCCCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECC
T ss_pred CC--CCCCcCCHHHhhhhhhccccceeeecCC-CcccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEcc
Confidence 98 45555442 122344 889998 678888755545558999999995 577777643 36789999988
Q ss_pred ------CCchHHHH
Q 023528 239 ------DCPLMEKR 246 (281)
Q Consensus 239 ------~c~~l~~~ 246 (281)
+|+.++..
T Consensus 233 ~N~~~c~c~~l~~l 246 (276)
T 2z62_A 233 TNPWDCSCPRIDYL 246 (276)
T ss_dssp SSCBCCCTTTTHHH
T ss_pred CCcccccCCchHHH
Confidence 46655543
No 56
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.66 E-value=1.5e-14 Score=129.15 Aligned_cols=188 Identities=29% Similarity=0.279 Sum_probs=84.9
Q ss_pred cCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccc------eeecCCCCCccCCCCCCCCCCccEEEeccCc
Q 023528 27 TLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER------IWIFGCPNLESFPEGGLPSTKLTRLTIWKCK 100 (281)
Q Consensus 27 ~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~------L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~ 100 (281)
+|++|++++|. +..+|.++.+++ |++|++++|. +..+|.. ++++++ .+..+|. +..+++|++|++++|
T Consensus 174 ~L~~L~L~~n~-l~~l~~~~~l~~-L~~L~l~~N~-l~~l~~~~~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~l~~N- 247 (454)
T 1jl5_A 174 SLEFIAAGNNQ-LEELPELQNLPF-LTAIYADNNS-LKKLPDLPLSLESIVAGNN-ILEELPE-LQNLPFLTTIYADNN- 247 (454)
T ss_dssp TCCEEECCSSC-CSSCCCCTTCTT-CCEEECCSSC-CSSCCCCCTTCCEEECCSS-CCSSCCC-CTTCTTCCEEECCSS-
T ss_pred cccEEECcCCc-CCcCccccCCCC-CCEEECCCCc-CCcCCCCcCcccEEECcCC-cCCcccc-cCCCCCCCEEECCCC-
Confidence 55555555543 444455555566 6666666554 2222221 555554 3335552 445566666666664
Q ss_pred ccccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC
Q 023528 101 NLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR 180 (281)
Q Consensus 101 ~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 180 (281)
.+..+|.. +++|++|+++++ .+..+|. .+++|+.|++++|. ++.++. ..++|++|++++ +.+..++.
T Consensus 248 ~l~~l~~~---~~~L~~L~l~~N-~l~~l~~--~~~~L~~L~ls~N~-l~~l~~----~~~~L~~L~l~~--N~l~~i~~ 314 (454)
T 1jl5_A 248 LLKTLPDL---PPSLEALNVRDN-YLTDLPE--LPQSLTFLDVSENI-FSGLSE----LPPNLYYLNASS--NEIRSLCD 314 (454)
T ss_dssp CCSSCCSC---CTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC-CSEESC----CCTTCCEEECCS--SCCSEECC
T ss_pred cCCccccc---ccccCEEECCCC-cccccCc--ccCcCCEEECcCCc-cCcccC----cCCcCCEEECcC--CcCCcccC
Confidence 33334422 245555555553 2333332 23555666665533 222110 013444444443 22333333
Q ss_pred CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCCCCCCCCcEEecCCC
Q 023528 181 FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKSLLRLGIDDC 240 (281)
Q Consensus 181 ~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~l~~c 240 (281)
.+.+|+.|++++ +.+..+| ..+++|++|++++| .++.+|. .+++|++|+++++
T Consensus 315 ~~~~L~~L~Ls~-N~l~~lp---~~~~~L~~L~L~~N-~l~~lp~--~l~~L~~L~L~~N 367 (454)
T 1jl5_A 315 LPPSLEELNVSN-NKLIELP---ALPPRLERLIASFN-HLAEVPE--LPQNLKQLHVEYN 367 (454)
T ss_dssp CCTTCCEEECCS-SCCSCCC---CCCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS
T ss_pred CcCcCCEEECCC-Ccccccc---ccCCcCCEEECCCC-ccccccc--hhhhccEEECCCC
Confidence 333455555554 3344444 12344555555543 3444444 3345555555444
No 57
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=1.4e-15 Score=137.03 Aligned_cols=210 Identities=14% Similarity=0.080 Sum_probs=122.8
Q ss_pred cceeecccCCCCCcccCCC-CCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccC
Q 023528 3 QDISRSSSGSTSRTPFSSE-NELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESF 81 (281)
Q Consensus 3 ~l~~l~~~~~~~l~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l 81 (281)
+++.|+++++. ++.++|. ..-.++|++|++++|. +...++++.+++ |++|++++|. +.. +
T Consensus 35 ~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~l~~l~~-L~~L~Ls~N~-l~~---------------l 95 (487)
T 3oja_A 35 NVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNV-LYETLDLESLST-LRTLDLNNNY-VQE---------------L 95 (487)
T ss_dssp GCCEEECCSSC-CCCCCGGGGTTCTTCCEEECTTSC-CEEEEECTTCTT-CCEEECCSSE-EEE---------------E
T ss_pred CccEEEeeCCc-CCCCCHHHHhCCCCCCEEEeeCCC-CCCCcccccCCC-CCEEEecCCc-CCC---------------C
Confidence 45555555532 4444221 1111355566665554 333333555555 6665555543 222 2
Q ss_pred CCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhcc
Q 023528 82 PEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDR 159 (281)
Q Consensus 82 ~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~ 159 (281)
+. .++|++|++++|. +..++. ..+++|+.|+++++ .+..++.. +.+++|+.|++++|......+......
T Consensus 96 ~~----~~~L~~L~L~~N~-l~~~~~--~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~ 167 (487)
T 3oja_A 96 LV----GPSIETLHAANNN-ISRVSC--SRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167 (487)
T ss_dssp EE----CTTCCEEECCSSC-CCCEEE--CCCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGG
T ss_pred CC----CCCcCEEECcCCc-CCCCCc--cccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhh
Confidence 21 2577888887753 343432 24577888888775 33333222 456788888888754443333322236
Q ss_pred CCCcceEEeecCCCCCccCCC--CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCC-CCCCCCcEEe
Q 023528 160 FACLRELRIRGGCPDLVSSPR--FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQ-GLPKSLLRLG 236 (281)
Q Consensus 160 l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~-~~~~~L~~L~ 236 (281)
+++|+.|++++ +.+..++. .+++|+.|++++ +.++.+|..+..+++|+.|++++| .+..+|.. +.+++|+.|+
T Consensus 168 l~~L~~L~Ls~--N~l~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~ 243 (487)
T 3oja_A 168 SDTLEHLNLQY--NFIYDVKGQVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFD 243 (487)
T ss_dssp TTTCCEEECTT--SCCCEEECCCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEE
T ss_pred CCcccEEecCC--CccccccccccCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEE
Confidence 78888888887 44555444 466888888888 567777655677788888888884 56666652 3357788888
Q ss_pred cCCCchH
Q 023528 237 IDDCPLM 243 (281)
Q Consensus 237 l~~c~~l 243 (281)
+++++..
T Consensus 244 l~~N~l~ 250 (487)
T 3oja_A 244 LRGNGFH 250 (487)
T ss_dssp CTTCCBC
T ss_pred cCCCCCc
Confidence 8877644
No 58
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.65 E-value=5.8e-15 Score=127.39 Aligned_cols=216 Identities=18% Similarity=0.147 Sum_probs=157.1
Q ss_pred CCCcccCCCCCccCcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccc----------eeecCCCCCcc
Q 023528 13 TSRTPFSSENELPATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAER----------IWIFGCPNLES 80 (281)
Q Consensus 13 ~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~----------L~l~~~~~l~~ 80 (281)
.+++++ |.+ +++++++|+++++. ++.+|. |+.+++ |++|+|+++...+.+|.+ +...++..+..
T Consensus 19 ~~Lt~i-P~~-l~~~l~~L~Ls~N~-i~~i~~~~f~~l~~-L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~ 94 (350)
T 4ay9_X 19 SKVTEI-PSD-LPRNAIELRFVLTK-LRVIQKGAFSGFGD-LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY 94 (350)
T ss_dssp TTCCSC-CTT-CCTTCSEEEEESCC-CSEECTTSSTTCTT-CCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE
T ss_pred CCCCcc-CcC-cCCCCCEEEccCCc-CCCcCHHHHcCCCC-CCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc
Confidence 458888 643 46799999999876 888875 788999 999999998766655532 23333456666
Q ss_pred CCC-CCCCCCCccEEEeccCccccccc-ccCcCCCCccEEeecCCcCCcccCCC---CCCCCcCeEEecCCCCccccchh
Q 023528 81 FPE-GGLPSTKLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVSFPED---GFPTNLQSLVVDDLKISKPLFEW 155 (281)
Q Consensus 81 l~~-~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~---~~~~~L~~L~l~~~~~~~~~~~~ 155 (281)
++. .+..+++|++|++++| .+..+| ..+.....+..+++.++..+..++.. .....++.|++++ +.++.++..
T Consensus 95 l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~ 172 (350)
T 4ay9_X 95 INPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNS 172 (350)
T ss_dssp ECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTT
T ss_pred cCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChh
Confidence 654 4456889999999985 455554 34445667778888776777777654 2335678888887 455666543
Q ss_pred hhccCCCcceEEeecCCCCCccCCC----CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCCCCCCC
Q 023528 156 GLDRFACLRELRIRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKS 231 (281)
Q Consensus 156 ~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~ 231 (281)
.....+|+++++.+ ++.++.+|. ..++|+.|++++ +.++.+|. ..+.+|+.|.+.++.+++.+|....+++
T Consensus 173 -~f~~~~L~~l~l~~-~n~l~~i~~~~f~~l~~L~~LdLs~-N~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~ 247 (350)
T 4ay9_X 173 -AFNGTQLDELNLSD-NNNLEELPNDVFHGASGPVILDISR-TRIHSLPS--YGLENLKKLRARSTYNLKKLPTLEKLVA 247 (350)
T ss_dssp -SSTTEEEEEEECTT-CTTCCCCCTTTTTTEECCSEEECTT-SCCCCCCS--SSCTTCCEEECTTCTTCCCCCCTTTCCS
T ss_pred -hccccchhHHhhcc-CCcccCCCHHHhccCcccchhhcCC-CCcCccCh--hhhccchHhhhccCCCcCcCCCchhCcC
Confidence 33456788898887 778888875 456899999998 68888884 3467788888888888888887555788
Q ss_pred CcEEecCC
Q 023528 232 LLRLGIDD 239 (281)
Q Consensus 232 L~~L~l~~ 239 (281)
|+.+++.+
T Consensus 248 L~~l~l~~ 255 (350)
T 4ay9_X 248 LMEASLTY 255 (350)
T ss_dssp CCEEECSC
T ss_pred hhhCcCCC
Confidence 99988865
No 59
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.65 E-value=1.2e-15 Score=139.56 Aligned_cols=206 Identities=19% Similarity=0.149 Sum_probs=117.6
Q ss_pred cCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccc-------eeecCCCCCccC---CCCCCCCCCccEEEe
Q 023528 27 TLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER-------IWIFGCPNLESF---PEGGLPSTKLTRLTI 96 (281)
Q Consensus 27 ~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~-------L~l~~~~~l~~l---~~~~~~~~~L~~L~l 96 (281)
+|++|++++|. +..+|. ..+++ |++|++.++......+.. ++++++. +... +.....+++|++|++
T Consensus 305 ~L~~L~l~~n~-~~~l~~-~~l~~-L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l 380 (570)
T 2z63_A 305 GWQHLELVNCK-FGQFPT-LKLKS-LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDL 380 (570)
T ss_dssp CCSEEEEESCB-CSSCCB-CBCSS-CCEEEEESCBSCCBCCCCBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEEC
T ss_pred CccEEeeccCc-ccccCc-ccccc-cCEEeCcCCccccccccccCCCCCEEeCcCCc-cCccccccccccccCccCEEEC
Confidence 55555555554 334443 34555 555555554432222211 4444332 1111 222334566777777
Q ss_pred ccCcccccccccCcCCCCccEEeecCCcCCcccC--CCCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCC
Q 023528 97 WKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFP--EDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPD 174 (281)
Q Consensus 97 ~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 174 (281)
++|. +..+|..+..+++|++|+++++......+ ....+++|+.|++++|......+ ..+..+++|++|++++ |.-
T Consensus 381 ~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~-n~l 457 (570)
T 2z63_A 381 SFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAG-NSF 457 (570)
T ss_dssp CSCS-EEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT-TTTTTCTTCCEEECTT-CEE
T ss_pred CCCc-cccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch-hhhhcCCcCcEEECcC-CcC
Confidence 7743 34444446677777777777643222222 12456788888888764433333 3577788888888887 433
Q ss_pred C-ccCCC---CCCCccEEeccCCCCCccc-cccCCCCCCcCEEeccCCCCcccccCCC--CCCCCcEEecCCCc
Q 023528 175 L-VSSPR---FPASLTQLGISDMPTLKCL-SSVGENLTSLETLDLSNCPKLKYFSKQG--LPKSLLRLGIDDCP 241 (281)
Q Consensus 175 ~-~~~~~---~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~i~~~~--~~~~L~~L~l~~c~ 241 (281)
. ..+|. ..++|+.|++++| .++.+ |..+..+++|++|++++| .++.++... .+++|++|++.+++
T Consensus 458 ~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 458 QENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp GGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 2 23443 4568888888884 55555 433377888888888885 566665432 25788888887744
No 60
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.65 E-value=1.4e-14 Score=131.41 Aligned_cols=80 Identities=19% Similarity=0.125 Sum_probs=39.8
Q ss_pred CCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccC---CC---CCCCccEEeccCCCCCcc-ccccC-CC
Q 023528 134 FPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSS---PR---FPASLTQLGISDMPTLKC-LSSVG-EN 205 (281)
Q Consensus 134 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~---~~~~L~~L~l~~c~~l~~-l~~~~-~~ 205 (281)
.+++|++|++++|......+ ..+..+++|++|++++ + .+..+ |. ..++|++|+++++ .+.. +|... ..
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~-N-~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~~~~~~ 397 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVF-ENCGHLTELETLILQM-N-QLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKKGDCSW 397 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTT-TTCCCCSSCCEEECCS-S-CCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGGCSCCC
T ss_pred hCCcccEEEeECCccChhhh-hhhccCCCCCEEEccC-C-ccCccccchHHHhhCCCCCEEECCCC-cCCcccccchhcc
Confidence 44566666666643333232 2455666666666665 2 33321 11 3445666666663 3443 55332 44
Q ss_pred CCCcCEEeccCC
Q 023528 206 LTSLETLDLSNC 217 (281)
Q Consensus 206 l~~L~~L~l~~c 217 (281)
+++|++|++++|
T Consensus 398 l~~L~~L~Ls~N 409 (520)
T 2z7x_B 398 TKSLLSLNMSSN 409 (520)
T ss_dssp CTTCCEEECCSS
T ss_pred CccCCEEECcCC
Confidence 555555555554
No 61
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.65 E-value=2.2e-14 Score=134.14 Aligned_cols=209 Identities=17% Similarity=0.101 Sum_probs=124.7
Q ss_pred CcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcc-hhcccc---------c---eeecCCCCCccCCCCCCCCCC
Q 023528 26 ATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSK-LESLAE---------R---IWIFGCPNLESFPEGGLPSTK 90 (281)
Q Consensus 26 ~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~-l~~~p~---------~---L~l~~~~~l~~l~~~~~~~~~ 90 (281)
++|++|++++|. +..++. +..+++ |++|++++|.. +..++. . ++++++......+..+..+++
T Consensus 329 ~~L~~L~l~~n~-l~~~~~~~~~~l~~-L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 406 (680)
T 1ziw_A 329 KCLEHLNMEDND-IPGIKSNMFTGLIN-LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406 (680)
T ss_dssp TTCCEEECCSCC-BCCCCTTTTTTCTT-CCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCCCEEECCCCc-cCCCChhHhccccC-CcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence 355555555544 333322 555666 77777666531 111110 0 555555433333445556777
Q ss_pred ccEEEeccCccccccc-ccCcCCCCccEEeecCCcCC--------------------------cccCCC-CCCCCcCeEE
Q 023528 91 LTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSL--------------------------VSFPED-GFPTNLQSLV 142 (281)
Q Consensus 91 L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l--------------------------~~l~~~-~~~~~L~~L~ 142 (281)
|++|++++|.....+| ..+..+++|++|+++++... ...|.. ..+++|+.|+
T Consensus 407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~ 486 (680)
T 1ziw_A 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486 (680)
T ss_dssp CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEE
T ss_pred CCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEE
Confidence 8888887765444444 45566667777766664211 112211 3456777777
Q ss_pred ecCCCCccccchhhhccCCCcceEEeecCCCCCccCC------------CCCCCccEEeccCCCCCccccccC-CCCCCc
Q 023528 143 VDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSP------------RFPASLTQLGISDMPTLKCLSSVG-ENLTSL 209 (281)
Q Consensus 143 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~------------~~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L 209 (281)
+++| .++.++...+..+++|++|++++ +.+..++ ...++|+.|++++ +.++.+|... ..+++|
T Consensus 487 Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~--N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~i~~~~~~~l~~L 562 (680)
T 1ziw_A 487 LSNN-NIANINDDMLEGLEKLEILDLQH--NNLARLWKHANPGGPIYFLKGLSHLHILNLES-NGFDEIPVEVFKDLFEL 562 (680)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCCEEECCS--SCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTC
T ss_pred CCCC-CCCcCChhhhccccccCEEeCCC--CCccccchhhccCCcchhhcCCCCCCEEECCC-CCCCCCCHHHcccccCc
Confidence 7774 34455555577778888888887 3343321 1346788888888 5777887554 788889
Q ss_pred CEEeccCCCCcccccCCCC--CCCCcEEecCCCc
Q 023528 210 ETLDLSNCPKLKYFSKQGL--PKSLLRLGIDDCP 241 (281)
Q Consensus 210 ~~L~l~~c~~l~~i~~~~~--~~~L~~L~l~~c~ 241 (281)
++|++++ ++++.++...+ +++|++|+++++.
T Consensus 563 ~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N~ 595 (680)
T 1ziw_A 563 KIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKNL 595 (680)
T ss_dssp CEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred ceeECCC-CCCCcCCHhHhCCCCCCCEEECCCCc
Confidence 9999987 56777776433 5789999998874
No 62
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.65 E-value=5.6e-15 Score=134.73 Aligned_cols=118 Identities=21% Similarity=0.113 Sum_probs=69.8
Q ss_pred cceeecccCCCCCcccCCCC-CccCcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccc----------
Q 023528 3 QDISRSSSGSTSRTPFSSEN-ELPATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAER---------- 69 (281)
Q Consensus 3 ~l~~l~~~~~~~l~~~~~~~-~~~~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~---------- 69 (281)
+++.|+++++. ++.+++.. .-.++|++|++++|. +..++. ++.+++ |++|+++++.. ..++..
T Consensus 27 ~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~-L~~L~Ls~n~l-~~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 27 AMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGS-LEHLDLSDNHL-SSLSSSWFGPLSSLKY 102 (549)
T ss_dssp TCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTT-CCEEECTTSCC-CSCCHHHHTTCTTCCE
T ss_pred CccEEECcCCc-cCccChhhhhcCCcccEEECCCCC-cCccChhhcccccc-CCEEECCCCcc-CccCHHHhccCCCCcE
Confidence 56667777654 55552211 122577777777765 444432 666777 77777777642 222211
Q ss_pred eeecCCCCCc-cCCCCCCCCCCccEEEeccCccccccc-ccCcCCCCccEEeecCCc
Q 023528 70 IWIFGCPNLE-SFPEGGLPSTKLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECR 124 (281)
Q Consensus 70 L~l~~~~~l~-~l~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~ 124 (281)
++++++.... ..+..+..+++|++|++++|..++.+| ..+..+++|++|+++++.
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence 6666653222 234556667777777777766556555 456777777777777643
No 63
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.64 E-value=4e-14 Score=117.69 Aligned_cols=190 Identities=26% Similarity=0.292 Sum_probs=144.3
Q ss_pred CcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCC-CCCCCCCccEEEeccCccccc
Q 023528 26 ATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPE-GGLPSTKLTRLTIWKCKNLKA 104 (281)
Q Consensus 26 ~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~ 104 (281)
...+.+++++.. ++.+|. .+|.++++|+++++. +..++. .+..+++|++|+++++ .++.
T Consensus 16 ~~~~~l~~~~~~-l~~ip~--~~~~~l~~L~l~~n~----------------l~~~~~~~~~~l~~L~~L~l~~n-~l~~ 75 (270)
T 2o6q_A 16 NNKNSVDCSSKK-LTAIPS--NIPADTKKLDLQSNK----------------LSSLPSKAFHRLTKLRLLYLNDN-KLQT 75 (270)
T ss_dssp TTTTEEECTTSC-CSSCCS--CCCTTCSEEECCSSC----------------CSCCCTTSSSSCTTCCEEECCSS-CCSC
T ss_pred CCCCEEEccCCC-CCccCC--CCCCCCCEEECcCCC----------------CCeeCHHHhcCCCCCCEEECCCC-ccCe
Confidence 467889988765 777775 233449999998864 233332 4456789999999995 5666
Q ss_pred cccc-CcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC-
Q 023528 105 LPNC-IHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR- 180 (281)
Q Consensus 105 lp~~-~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~- 180 (281)
+|.. +..+++|++|+++++ .+..++.. ..+++|++|++++| .++.++...+..+++|++|++++ +.+..++.
T Consensus 76 i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~--n~l~~~~~~ 151 (270)
T 2o6q_A 76 LPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGY--NELQSLPKG 151 (270)
T ss_dssp CCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS--SCCCCCCTT
T ss_pred eChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCC--CcCCccCHh
Confidence 7654 578999999999985 56666643 56789999999984 55666655688999999999998 46666654
Q ss_pred ---CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCCCC--CCCCcEEecCCCc
Q 023528 181 ---FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQGL--PKSLLRLGIDDCP 241 (281)
Q Consensus 181 ---~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~~~--~~~L~~L~l~~c~ 241 (281)
..++|+.|++++ +.++.++... ..+++|++|++++| .++.++...+ +++|++|++.+++
T Consensus 152 ~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 152 VFDKLTSLKELRLYN-NQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred HccCCcccceeEecC-CcCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 467999999999 5788887554 78999999999995 6777776433 6799999998754
No 64
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.64 E-value=2.9e-15 Score=127.07 Aligned_cols=186 Identities=19% Similarity=0.157 Sum_probs=146.1
Q ss_pred CcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCcccccc
Q 023528 26 ATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKAL 105 (281)
Q Consensus 26 ~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l 105 (281)
++|++|++++|. +..++.+..+++ |++|++++|. +. .++. ...+++|++|++++|. +..+
T Consensus 41 ~~L~~L~l~~~~-i~~l~~~~~l~~-L~~L~L~~n~-i~---------------~~~~-~~~l~~L~~L~L~~n~-l~~~ 100 (308)
T 1h6u_A 41 DGITTLSAFGTG-VTTIEGVQYLNN-LIGLELKDNQ-IT---------------DLAP-LKNLTKITELELSGNP-LKNV 100 (308)
T ss_dssp HTCCEEECTTSC-CCCCTTGGGCTT-CCEEECCSSC-CC---------------CCGG-GTTCCSCCEEECCSCC-CSCC
T ss_pred CCcCEEEeeCCC-ccCchhhhccCC-CCEEEccCCc-CC---------------CChh-HccCCCCCEEEccCCc-CCCc
Confidence 599999999886 777888888999 9999998864 22 2222 4456799999999965 6666
Q ss_pred cccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC--CCC
Q 023528 106 PNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR--FPA 183 (281)
Q Consensus 106 p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~ 183 (281)
+ .+..+++|++|+++++ .+..++....+++|+.|++++| .++.++. +..+++|++|++++ + .+..++. ..+
T Consensus 101 ~-~~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~-n-~l~~~~~l~~l~ 173 (308)
T 1h6u_A 101 S-AIAGLQSIKTLDLTST-QITDVTPLAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGN-A-QVSDLTPLANLS 173 (308)
T ss_dssp G-GGTTCTTCCEEECTTS-CCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCS-S-CCCCCGGGTTCT
T ss_pred h-hhcCCCCCCEEECCCC-CCCCchhhcCCCCCCEEECCCC-ccCcCcc--ccCCCCccEEEccC-C-cCCCChhhcCCC
Confidence 4 6888999999999985 5666666678899999999985 4555553 78899999999998 4 5555554 567
Q ss_pred CccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCCCCCCCCcEEecCCCc
Q 023528 184 SLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKSLLRLGIDDCP 241 (281)
Q Consensus 184 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~l~~c~ 241 (281)
+|+.|++++ +.++.++ ....+++|++|++++| .+..++....+++|++|++.+++
T Consensus 174 ~L~~L~l~~-n~l~~~~-~l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 174 KLTTLKADD-NKISDIS-PLASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp TCCEEECCS-SCCCCCG-GGGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEEEE
T ss_pred CCCEEECCC-CccCcCh-hhcCCCCCCEEEccCC-ccCccccccCCCCCCEEEccCCe
Confidence 899999999 5788777 3678899999999995 56776654457899999988876
No 65
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.64 E-value=1.1e-14 Score=133.45 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=15.2
Q ss_pred CcCceeeccCCcCcccccc--CCCcCCcCcEEEecCC
Q 023528 26 ATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDC 60 (281)
Q Consensus 26 ~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~ 60 (281)
++|++|++++|. +..+++ ++.+++ |++|+++++
T Consensus 76 ~~L~~L~Ls~N~-l~~~~~~~~~~l~~-L~~L~Ls~N 110 (562)
T 3a79_B 76 SELRVLRLSHNR-IRSLDFHVFLFNQD-LEYLDVSHN 110 (562)
T ss_dssp TTCCEEECCSCC-CCEECTTTTTTCTT-CCEEECTTS
T ss_pred CCccEEECCCCC-CCcCCHHHhCCCCC-CCEEECCCC
Confidence 355555555443 333321 444445 555555544
No 66
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.63 E-value=1.4e-14 Score=121.83 Aligned_cols=190 Identities=22% Similarity=0.175 Sum_probs=144.9
Q ss_pred CcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCcccccc
Q 023528 26 ATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKAL 105 (281)
Q Consensus 26 ~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l 105 (281)
+++++++++++. ++.+|. +-.++ +++|+++++. +..++ +..+..+++|++|+++++ .+..+
T Consensus 10 ~~l~~l~~~~~~-l~~ip~-~~~~~-l~~L~L~~N~-l~~~~--------------~~~~~~l~~L~~L~L~~n-~l~~~ 70 (290)
T 1p9a_G 10 ASHLEVNCDKRN-LTALPP-DLPKD-TTILHLSENL-LYTFS--------------LATLMPYTRLTQLNLDRA-ELTKL 70 (290)
T ss_dssp TTCCEEECTTSC-CSSCCS-CCCTT-CCEEECTTSC-CSEEE--------------GGGGTTCTTCCEEECTTS-CCCEE
T ss_pred CCccEEECCCCC-CCcCCC-CCCCC-CCEEEcCCCc-CCccC--------------HHHhhcCCCCCEEECCCC-ccCcc
Confidence 488999998765 777775 11245 9999998865 22211 123345679999999995 56666
Q ss_pred cccCcCCCCccEEeecCCcCCcccCCC-CCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC----
Q 023528 106 PNCIHNLTSLLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR---- 180 (281)
Q Consensus 106 p~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---- 180 (281)
+.. ..+++|++|+++++ .+..+|.. ..+++|+.|++++ +.++.++...+..+++|++|++++ +.+..++.
T Consensus 71 ~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~l~~L~~L~L~~--N~l~~~~~~~~~ 145 (290)
T 1p9a_G 71 QVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKG--NELKTLPPGLLT 145 (290)
T ss_dssp ECC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCS-SCCCCCCSSTTTTCTTCCEEECTT--SCCCCCCTTTTT
T ss_pred cCC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCC-CcCcccCHHHHcCCCCCCEEECCC--CCCCccChhhcc
Confidence 543 78999999999984 66677764 5788999999998 456666655788999999999998 56666665
Q ss_pred CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCCCC-CCCCcEEecCCCc
Q 023528 181 FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQGL-PKSLLRLGIDDCP 241 (281)
Q Consensus 181 ~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~~~-~~~L~~L~l~~c~ 241 (281)
..++|+.|++++ +.++.+|... ..+++|++|++++ +.++.+|.... ..+|+++++.+++
T Consensus 146 ~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 146 PTPKLEKLSLAN-NNLTELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TCTTCCEEECTT-SCCSCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred cccCCCEEECCC-CcCCccCHHHhcCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCCC
Confidence 457899999999 6899998665 7899999999999 57788887433 5689999998643
No 67
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.62 E-value=6.5e-15 Score=134.79 Aligned_cols=232 Identities=15% Similarity=0.074 Sum_probs=162.1
Q ss_pred CcCceeeccCCcCcccccc-CCCcCCcCcEEEecCCcchhccccc-------eeecCCCCCccCCCCCCCCCCccEEEec
Q 023528 26 ATLEHLEVTHCSNLAFLSW-NGNLPRALKYLYVKDCSKLESLAER-------IWIFGCPNLESFPEGGLPSTKLTRLTIW 97 (281)
Q Consensus 26 ~~L~~L~l~~~~~l~~l~~-~~~l~~~L~~L~l~~~~~l~~~p~~-------L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 97 (281)
++|++|+++++. +..+|. +..+ + |++|++++|. +..+|.. +++.++.....++. ..+++|++|+++
T Consensus 282 ~~L~~L~l~~~~-l~~l~~~~~~~-~-L~~L~l~~n~-~~~l~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~ 355 (570)
T 2z63_A 282 TNVSSFSLVSVT-IERVKDFSYNF-G-WQHLELVNCK-FGQFPTLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLS 355 (570)
T ss_dssp TTCSEEEEESCE-ECSCCBCCSCC-C-CSEEEEESCB-CSSCCBCBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECC
T ss_pred CcccEEEecCcc-chhhhhhhccC-C-ccEEeeccCc-ccccCcccccccCEEeCcCCcccccccc--ccCCCCCEEeCc
Confidence 689999999886 566665 4555 6 9999999986 3455543 77777654444443 557899999999
Q ss_pred cCcccccc---cccCcCCCCccEEeecCCcCCcccCC-CCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCC
Q 023528 98 KCKNLKAL---PNCIHNLTSLLHLEIRECRSLVSFPE-DGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCP 173 (281)
Q Consensus 98 ~c~~l~~l---p~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 173 (281)
+|.. ..+ |..+..+++|++|+++++ .+..++. ...+++|+.|++++|......+...+..+++|++|++++ |.
T Consensus 356 ~n~l-~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-n~ 432 (570)
T 2z63_A 356 RNGL-SFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH-TH 432 (570)
T ss_dssp SSCC-BEEEEEEHHHHTCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTT-SC
T ss_pred CCcc-CccccccccccccCccCEEECCCC-ccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcC-Cc
Confidence 9653 333 566788999999999986 3444443 356789999999986544433334578899999999998 64
Q ss_pred CCccCCC---CCCCccEEeccCCCCC-ccccccCCCCCCcCEEeccCCCCcccc-cC-CCCCCCCcEEecCCCchHHHHH
Q 023528 174 DLVSSPR---FPASLTQLGISDMPTL-KCLSSVGENLTSLETLDLSNCPKLKYF-SK-QGLPKSLLRLGIDDCPLMEKRW 247 (281)
Q Consensus 174 ~~~~~~~---~~~~L~~L~l~~c~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~i-~~-~~~~~~L~~L~l~~c~~l~~~~ 247 (281)
.....+. ..++|+.|++++|... ..+|..+..+++|++|++++| .+..+ +. .+.+++|++|++.+|..- ..
T Consensus 433 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~- 509 (570)
T 2z63_A 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASNQLK-SV- 509 (570)
T ss_dssp CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCS-CC-
T ss_pred ccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCCcCC-CC-
Confidence 4333443 4679999999996433 357755589999999999996 45555 33 233689999999998521 11
Q ss_pred hhcCCCCCcccccccccccccEEEECCEEee
Q 023528 248 IKADYPYTFATRYWPMITHIPCVIVNGRFVF 278 (281)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 278 (281)
.. ..+..+.++..+.+.++.+.
T Consensus 510 ---~~------~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 510 ---PD------GIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp ---CT------TTTTTCTTCCEEECCSSCBC
T ss_pred ---CH------HHhhcccCCcEEEecCCccc
Confidence 00 22445667777777776543
No 68
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.61 E-value=1.2e-14 Score=118.58 Aligned_cols=193 Identities=16% Similarity=0.126 Sum_probs=142.7
Q ss_pred ccceeecccCCCCCcccCCCCCc--cCcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccceeecCCCC
Q 023528 2 KQDISRSSSGSTSRTPFSSENEL--PATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAERIWIFGCPN 77 (281)
Q Consensus 2 ~~l~~l~~~~~~~l~~~~~~~~~--~~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~ 77 (281)
++++.|+++++. ++.+ +...+ .++|++|+++++..++.++. +..+++ |++|++++|..++.++.
T Consensus 31 ~~l~~L~l~~n~-l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~-L~~L~l~~~n~l~~i~~--------- 98 (239)
T 2xwt_C 31 PSTQTLKLIETH-LRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSK-VTHIEIRNTRNLTYIDP--------- 98 (239)
T ss_dssp TTCCEEEEESCC-CSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTT-CCEEEEEEETTCCEECT---------
T ss_pred CcccEEEEeCCc-ceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcC-CcEEECCCCCCeeEcCH---------
Confidence 357888998754 8888 43333 37999999999876777764 778899 99999987544444321
Q ss_pred CccCCCCCCCCCCccEEEeccCcccccccccCcCCCCcc---EEeecCCcCCcccCCC--CCCCCcC-eEEecCCCCccc
Q 023528 78 LESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLL---HLEIRECRSLVSFPED--GFPTNLQ-SLVVDDLKISKP 151 (281)
Q Consensus 78 l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~---~L~l~~~~~l~~l~~~--~~~~~L~-~L~l~~~~~~~~ 151 (281)
..+..+++|++|++++| .++.+|. +..+++|+ +|++++++.++.++.. ..+++|+ .+++++| .++.
T Consensus 99 -----~~f~~l~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~ 170 (239)
T 2xwt_C 99 -----DALKELPLLKFLGIFNT-GLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTS 170 (239)
T ss_dssp -----TSEECCTTCCEEEEEEE-CCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCE
T ss_pred -----HHhCCCCCCCEEeCCCC-CCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcc
Confidence 12234679999999996 4566775 77788887 9999986577777764 5678999 9999885 4556
Q ss_pred cchhhhccCCCcceEEeecCCCCCccCCC----CC-CCccEEeccCCCCCccccccCCCCCCcCEEeccCCCC
Q 023528 152 LFEWGLDRFACLRELRIRGGCPDLVSSPR----FP-ASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPK 219 (281)
Q Consensus 152 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~-~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~ 219 (281)
++...+.. ++|++|++++ +..++.++. .. ++|+.|++++ +.++.+|.. .+++|+.|++.++..
T Consensus 171 i~~~~~~~-~~L~~L~L~~-n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 171 VQGYAFNG-TKLDAVYLNK-NKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp ECTTTTTT-CEEEEEECTT-CTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT--TCTTCSEEECTTC--
T ss_pred cCHhhcCC-CCCCEEEcCC-CCCcccCCHHHhhccccCCcEEECCC-CccccCChh--HhccCceeeccCccC
Confidence 66555555 7899999998 544666654 34 7899999999 688888843 688999999988643
No 69
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.61 E-value=1.2e-14 Score=121.05 Aligned_cols=168 Identities=25% Similarity=0.288 Sum_probs=124.5
Q ss_pred CcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCcccccc
Q 023528 26 ATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKAL 105 (281)
Q Consensus 26 ~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l 105 (281)
++|+.|+++++. +..++.++.+++ |++|+++++. +.. ++ ....+++|++|++++| .+..+
T Consensus 41 ~~L~~L~l~~~~-i~~~~~l~~l~~-L~~L~l~~n~-l~~---------------~~-~l~~l~~L~~L~L~~n-~l~~~ 100 (272)
T 3rfs_A 41 NSIDQIIANNSD-IKSVQGIQYLPN-VRYLALGGNK-LHD---------------IS-ALKELTNLTYLILTGN-QLQSL 100 (272)
T ss_dssp TTCCEEECTTSC-CCCCTTGGGCTT-CCEEECTTSC-CCC---------------CG-GGTTCTTCCEEECTTS-CCCCC
T ss_pred cceeeeeeCCCC-cccccccccCCC-CcEEECCCCC-CCC---------------ch-hhcCCCCCCEEECCCC-ccCcc
Confidence 589999999876 777777888899 9999998865 111 11 2334678999999986 44555
Q ss_pred c-ccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC--
Q 023528 106 P-NCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR-- 180 (281)
Q Consensus 106 p-~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-- 180 (281)
+ ..+..+++|++|+++++ .+..++.. ..+++|++|++++| .++.++...+..+++|++|++++ + .++.++.
T Consensus 101 ~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~-n-~l~~~~~~~ 176 (272)
T 3rfs_A 101 PNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSY-N-QLQSLPEGV 176 (272)
T ss_dssp CTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-S-CCCCCCTTT
T ss_pred ChhHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCC-C-CcCccCHHH
Confidence 4 44678899999999885 45555543 56789999999885 55566655678889999999998 4 5555554
Q ss_pred --CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCC
Q 023528 181 --FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCP 218 (281)
Q Consensus 181 --~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~ 218 (281)
..++|++|++++ +.++.++... ..+++|++|++++|+
T Consensus 177 ~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 177 FDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hcCCccCCEEECCC-CcCCccCHHHHhCCcCCCEEEccCCC
Confidence 457899999998 4677776554 788999999999864
No 70
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.61 E-value=2.5e-14 Score=130.43 Aligned_cols=206 Identities=17% Similarity=0.203 Sum_probs=143.9
Q ss_pred CCCcccCCCCCccCcCceeeccCCcCccccc--cCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCC
Q 023528 13 TSRTPFSSENELPATLEHLEVTHCSNLAFLS--WNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTK 90 (281)
Q Consensus 13 ~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~ 90 (281)
..++.+ |.. ++++|++|+++++. +..++ .++.+++ |++|+++++. +..+ .+..+..+++
T Consensus 15 ~~l~~i-p~~-~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~-L~~L~Ls~n~-i~~~--------------~~~~~~~l~~ 75 (549)
T 2z81_A 15 RSFTSI-PSG-LTAAMKSLDLSFNK-ITYIGHGDLRACAN-LQVLILKSSR-INTI--------------EGDAFYSLGS 75 (549)
T ss_dssp SCCSSC-CSC-CCTTCCEEECCSSC-CCEECSSTTSSCTT-CCEEECTTSC-CCEE--------------CTTTTTTCTT
T ss_pred Cccccc-ccc-CCCCccEEECcCCc-cCccChhhhhcCCc-ccEEECCCCC-cCcc--------------Chhhcccccc
Confidence 457788 543 44799999999987 66553 3788999 9999999864 2221 1234455778
Q ss_pred ccEEEeccCccccccc-ccCcCCCCccEEeecCCcCCccc--CC-CCCCCCcCeEEecCCCCccccchhhhccCCCcceE
Q 023528 91 LTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVSF--PE-DGFPTNLQSLVVDDLKISKPLFEWGLDRFACLREL 166 (281)
Q Consensus 91 L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~l--~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 166 (281)
|++|++++|. +..++ ..+..+++|++|+++++ .+..+ +. .+.+++|++|++++|...+.++...+.++++|++|
T Consensus 76 L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 153 (549)
T 2z81_A 76 LEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL 153 (549)
T ss_dssp CCEEECTTSC-CCSCCHHHHTTCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred CCEEECCCCc-cCccCHHHhccCCCCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCee
Confidence 9999999964 44444 45888999999999885 34432 22 36678999999998776777766678888999999
Q ss_pred EeecCCCCCccCCC---CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCccccc-----CCCCCCCCcEEec
Q 023528 167 RIRGGCPDLVSSPR---FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFS-----KQGLPKSLLRLGI 237 (281)
Q Consensus 167 ~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~-----~~~~~~~L~~L~l 237 (281)
++++ +.-....+. ..++|++|++++ +....+|... ..+++|++|++++| .+..++ ....+++|++|++
T Consensus 154 ~L~~-n~l~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~L~~L~l 230 (549)
T 2z81_A 154 EIKA-LSLRNYQSQSLKSIRDIHHLTLHL-SESAFLLEIFADILSSVRYLELRDT-NLARFQFSPLPVDEVSSPMKKLAF 230 (549)
T ss_dssp EEEE-TTCCEECTTTTTTCSEEEEEEEEC-SBSTTHHHHHHHSTTTBSEEEEESC-BCTTCCCCCCSSCCCCCCCCEEEE
T ss_pred eccC-CcccccChhhhhccccCceEeccc-CcccccchhhHhhcccccEEEccCC-ccccccccccchhhhhhcccceec
Confidence 9988 443333443 456788888888 4566666444 56888999999885 444432 1223567888888
Q ss_pred CCCch
Q 023528 238 DDCPL 242 (281)
Q Consensus 238 ~~c~~ 242 (281)
.++..
T Consensus 231 ~~n~l 235 (549)
T 2z81_A 231 RGSVL 235 (549)
T ss_dssp ESCEE
T ss_pred ccccc
Confidence 87753
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.61 E-value=6.7e-15 Score=124.99 Aligned_cols=211 Identities=15% Similarity=0.093 Sum_probs=102.1
Q ss_pred cceeecccCCCCCcccCCCCCccCcCceeeccCCcCcc--cccc-CC-------CcCCcCcEEEecCCcchhccccceee
Q 023528 3 QDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLA--FLSW-NG-------NLPRALKYLYVKDCSKLESLAERIWI 72 (281)
Q Consensus 3 ~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~--~l~~-~~-------~l~~~L~~L~l~~~~~l~~~p~~L~l 72 (281)
+++.+.++++. + .+ |. .++..|+.|+++++. +. .++. +. .+++ |++|+++++...+.+|
T Consensus 44 ~L~~l~l~~n~-l-~~-p~-~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~----- 112 (312)
T 1wwl_A 44 SLEYLLKRVDT-E-AD-LG-QFTDIIKSLSLKRLT-VRAARIPSRILFGALRVLGISG-LQELTLENLEVTGTAP----- 112 (312)
T ss_dssp ECTTHHHHCCT-T-CC-CH-HHHHHHHHCCCCEEE-EEEEECBHHHHHHHHHHHTTSC-CCEEEEEEEBCBSCCC-----
T ss_pred CceeEeecccc-c-cc-HH-HHHHHHhhccccccc-ccCCCcCHHHHHHHHHhcCcCC-ccEEEccCCcccchhH-----
Confidence 35555555544 3 44 32 233457777777765 32 2332 11 4677 8888887765222222
Q ss_pred cCCCCCccCCCCC--CCCCCccEEEeccCcccccccccCcCC-----CCccEEeecCCcCCcccCC--CCCCCCcCeEEe
Q 023528 73 FGCPNLESFPEGG--LPSTKLTRLTIWKCKNLKALPNCIHNL-----TSLLHLEIRECRSLVSFPE--DGFPTNLQSLVV 143 (281)
Q Consensus 73 ~~~~~l~~l~~~~--~~~~~L~~L~l~~c~~l~~lp~~~~~l-----~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l 143 (281)
... ..+++|++|++++|. +..+|..+..+ ++|++|+++++ .+..++. .+.+++|++|++
T Consensus 113 ----------~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L 180 (312)
T 1wwl_A 113 ----------PPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDL 180 (312)
T ss_dssp ----------CCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEEC
T ss_pred ----------HHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEEC
Confidence 221 334566666666643 33334444433 56666666653 3333332 134556666666
Q ss_pred cCCCCccc--cc-hhhhccCCCcceEEeecCCCCCccCCC-------CCCCccEEeccCCCCCcccc-cc-CCCCCCcCE
Q 023528 144 DDLKISKP--LF-EWGLDRFACLRELRIRGGCPDLVSSPR-------FPASLTQLGISDMPTLKCLS-SV-GENLTSLET 211 (281)
Q Consensus 144 ~~~~~~~~--~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~-------~~~~L~~L~l~~c~~l~~l~-~~-~~~l~~L~~ 211 (281)
++|..... ++ ...+..+++|++|++++ +.++.++. ..++|+.|++++ +.++..+ .. +..+++|++
T Consensus 181 s~N~l~~~~~~~~~~~~~~l~~L~~L~L~~--N~l~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~ 257 (312)
T 1wwl_A 181 SDNPELGERGLISALCPLKFPTLQVLALRN--AGMETPSGVCSALAAARVQLQGLDLSH-NSLRDAAGAPSCDWPSQLNS 257 (312)
T ss_dssp CSCTTCHHHHHHHHSCTTSCTTCCEEECTT--SCCCCHHHHHHHHHHTTCCCSEEECTT-SCCCSSCCCSCCCCCTTCCE
T ss_pred CCCCcCcchHHHHHHHhccCCCCCEEECCC--CcCcchHHHHHHHHhcCCCCCEEECCC-CcCCcccchhhhhhcCCCCE
Confidence 65443322 11 11124556666666665 23332211 234566666666 3444322 11 144556666
Q ss_pred EeccCCCCcccccCCCCCCCCcEEecCCCc
Q 023528 212 LDLSNCPKLKYFSKQGLPKSLLRLGIDDCP 241 (281)
Q Consensus 212 L~l~~c~~l~~i~~~~~~~~L~~L~l~~c~ 241 (281)
|++++| .++.+|.... ++|++|+++++.
T Consensus 258 L~Ls~N-~l~~ip~~~~-~~L~~L~Ls~N~ 285 (312)
T 1wwl_A 258 LNLSFT-GLKQVPKGLP-AKLSVLDLSYNR 285 (312)
T ss_dssp EECTTS-CCSSCCSSCC-SEEEEEECCSSC
T ss_pred EECCCC-ccChhhhhcc-CCceEEECCCCC
Confidence 666663 3445554222 556666666554
No 72
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.60 E-value=4.7e-14 Score=117.40 Aligned_cols=144 Identities=26% Similarity=0.278 Sum_probs=78.9
Q ss_pred CCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcce
Q 023528 88 STKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRE 165 (281)
Q Consensus 88 ~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 165 (281)
+++|++|++++|. +..+ ..+..+++|++|+++++ .++.++.. ..+++|++|++++| .++.++...+..+++|++
T Consensus 62 l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 137 (272)
T 3rfs_A 62 LPNVRYLALGGNK-LHDI-SALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTY 137 (272)
T ss_dssp CTTCCEEECTTSC-CCCC-GGGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCE
T ss_pred CCCCcEEECCCCC-CCCc-hhhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCE
Confidence 4566666666643 3333 25556666666666664 34444432 44566666666663 333444334566666666
Q ss_pred EEeecCCCCCccCCC----CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCC--CCCCCCcEEecC
Q 023528 166 LRIRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQ--GLPKSLLRLGID 238 (281)
Q Consensus 166 L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~--~~~~~L~~L~l~ 238 (281)
|++++ + .++.++. ..++|+.|++++ +.++.++... +.+++|++|++++| .+..++.. +.+++|++|++.
T Consensus 138 L~L~~-n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~ 213 (272)
T 3rfs_A 138 LNLAH-N-QLQSLPKGVFDKLTNLTELDLSY-NQLQSLPEGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLH 213 (272)
T ss_dssp EECCS-S-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECC
T ss_pred EECCC-C-ccCccCHHHhccCccCCEEECCC-CCcCccCHHHhcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEcc
Confidence 66666 3 4444432 345666666666 3455555343 56666666666664 34444432 224566666665
Q ss_pred C
Q 023528 239 D 239 (281)
Q Consensus 239 ~ 239 (281)
+
T Consensus 214 ~ 214 (272)
T 3rfs_A 214 D 214 (272)
T ss_dssp S
T ss_pred C
Confidence 5
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.60 E-value=3.4e-14 Score=118.40 Aligned_cols=190 Identities=19% Similarity=0.196 Sum_probs=138.5
Q ss_pred cceeecccCCCCCcccCCCCCc--cCcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccceeecCCCCC
Q 023528 3 QDISRSSSGSTSRTPFSSENEL--PATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAERIWIFGCPNL 78 (281)
Q Consensus 3 ~l~~l~~~~~~~l~~~~~~~~~--~~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l 78 (281)
.++.|+++++. ++.+++ ..+ .++|++|++++|. +..++. ++.+++ |++|+++++. +
T Consensus 29 ~l~~L~ls~n~-l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~-L~~L~L~~n~-l--------------- 88 (276)
T 2z62_A 29 STKNLDLSFNP-LRHLGS-YSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSH-LSTLILTGNP-I--------------- 88 (276)
T ss_dssp TCCEEECTTCC-CCEECT-TTTTTCTTCSEEECTTCC-CCEECTTTTTTCTT-CCEEECTTCC-C---------------
T ss_pred CccEEECCCCc-ccccCH-hHhccccCCcEEECCCCc-CCccCHHHccCCcC-CCEEECCCCc-c---------------
Confidence 57889998754 777733 222 3699999999986 666654 788999 9999998865 2
Q ss_pred ccCC-CCCCCCCCccEEEeccCccccccc-ccCcCCCCccEEeecCCcCCcc--cCCC-CCCCCcCeEEecCCCCccccc
Q 023528 79 ESFP-EGGLPSTKLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVS--FPED-GFPTNLQSLVVDDLKISKPLF 153 (281)
Q Consensus 79 ~~l~-~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~--l~~~-~~~~~L~~L~l~~~~~~~~~~ 153 (281)
..++ ..+..+++|++|++++|. +..++ ..+..+++|++|+++++ .+.. +|.. ..+++|++|++++|. ++.++
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~ 165 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIY 165 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC-CCEEC
T ss_pred CccChhhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCC-CCcCC
Confidence 2222 334557799999999965 44444 46889999999999985 4444 3432 567999999999954 44444
Q ss_pred hhhhccCCCcc----eEEeecCCCCCccCCC---CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCC
Q 023528 154 EWGLDRFACLR----ELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCP 218 (281)
Q Consensus 154 ~~~~~~l~~L~----~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~ 218 (281)
...+..+++|+ .|++++ +.+..++. ...+|+.|++++ +.++.+|... ..+++|++|++++++
T Consensus 166 ~~~~~~l~~L~~l~l~L~ls~--n~l~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 166 CTDLRVLHQMPLLNLSLDLSL--NPMNFIQPGAFKEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp GGGGHHHHTCTTCCEEEECCS--SCCCEECTTSSCSCCEEEEECCS-SCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred HHHhhhhhhccccceeeecCC--CcccccCccccCCCcccEEECCC-CceeecCHhHhcccccccEEEccCCc
Confidence 44555566666 788887 55666654 334899999999 5788888665 889999999999854
No 74
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.60 E-value=1.7e-13 Score=131.17 Aligned_cols=100 Identities=16% Similarity=0.140 Sum_probs=52.4
Q ss_pred CCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccC-CC---CCCCcc
Q 023528 113 TSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSS-PR---FPASLT 186 (281)
Q Consensus 113 ~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~---~~~~L~ 186 (281)
++|+.|+++++ .+..++.. ..+++|+.|++++|. ++..+...+..+++|++|++++ + .++.+ +. ..++|+
T Consensus 266 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~-N-~l~~~~~~~~~~l~~L~ 341 (844)
T 3j0a_A 266 SSVRHLDLSHG-FVFSLNSRVFETLKDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLSY-N-LLGELYSSNFYGLPKVA 341 (844)
T ss_dssp SCCCEEECTTC-CCCEECSCCSSSCCCCCEEEEESCC-CCEECTTTTTTCSSCCEEEEES-C-CCSCCCSCSCSSCTTCC
T ss_pred CCccEEECCCC-cccccChhhhhcCCCCCEEECCCCc-CCCCChHHhcCCCCCCEEECCC-C-CCCccCHHHhcCCCCCC
Confidence 45566666553 22222221 345666666666643 3333223456666666666666 3 33333 21 344666
Q ss_pred EEeccCCCCCccccccC-CCCCCcCEEeccCC
Q 023528 187 QLGISDMPTLKCLSSVG-ENLTSLETLDLSNC 217 (281)
Q Consensus 187 ~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c 217 (281)
.|++++ +.++.++... ..+++|++|++++|
T Consensus 342 ~L~L~~-N~i~~~~~~~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 342 YIDLQK-NHIAIIQDQTFKFLEKLQTLDLRDN 372 (844)
T ss_dssp EEECCS-CCCCCCCSSCSCSCCCCCEEEEETC
T ss_pred EEECCC-CCCCccChhhhcCCCCCCEEECCCC
Confidence 666666 3555555333 55666666666663
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.59 E-value=8.6e-15 Score=124.32 Aligned_cols=198 Identities=17% Similarity=0.134 Sum_probs=139.8
Q ss_pred CcCceeeccCCcCcccccc-C--CCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCccc
Q 023528 26 ATLEHLEVTHCSNLAFLSW-N--GNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNL 102 (281)
Q Consensus 26 ~~L~~L~l~~~~~l~~l~~-~--~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l 102 (281)
++|++|++++|.--..+|. + +.+++ |++|+++++. +..+|.. +..++.. .+++|++|++++|...
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~-L~~L~Ls~N~-l~~~~~~--------~~~l~~~--~~~~L~~L~L~~N~l~ 162 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPD-LNILNLRNVS-WATRDAW--------LAELQQW--LKPGLKVLSIAQAHSL 162 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCC-CSEEEEESCB-CSSSSSH--------HHHHHTT--CCTTCCEEEEESCSCC
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCC-ccEEEccCCC-CcchhHH--------HHHHHHh--hcCCCcEEEeeCCCCc
Confidence 6999999999873335555 3 78899 9999999875 2222210 1111110 1369999999996543
Q ss_pred ccccccCcCCCCccEEeecCCcCCcc--cC-CC--CCCCCcCeEEecCCCCc--cccchhhhccCCCcceEEeecCCCCC
Q 023528 103 KALPNCIHNLTSLLHLEIRECRSLVS--FP-ED--GFPTNLQSLVVDDLKIS--KPLFEWGLDRFACLRELRIRGGCPDL 175 (281)
Q Consensus 103 ~~lp~~~~~l~~L~~L~l~~~~~l~~--l~-~~--~~~~~L~~L~l~~~~~~--~~~~~~~~~~l~~L~~L~l~~~~~~~ 175 (281)
...|..+..+++|++|+++++...+. ++ .. ..+++|++|++++|... ..++...+..+++|++|++++ + .+
T Consensus 163 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~-N-~l 240 (312)
T 1wwl_A 163 NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH-N-SL 240 (312)
T ss_dssp CCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTT-S-CC
T ss_pred cchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCC-C-cC
Confidence 43347888999999999998654433 11 22 56789999999996433 134444456789999999998 4 45
Q ss_pred ccCC-C----CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCCCCCCCCcEEecCCCc
Q 023528 176 VSSP-R----FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKSLLRLGIDDCP 241 (281)
Q Consensus 176 ~~~~-~----~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~l~~c~ 241 (281)
...+ . .+++|+.|++++ +.++.+|.... ++|++|++++ ++++.+|....+++|++|++++++
T Consensus 241 ~~~~~~~~~~~l~~L~~L~Ls~-N~l~~ip~~~~--~~L~~L~Ls~-N~l~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 241 RDAAGAPSCDWPSQLNSLNLSF-TGLKQVPKGLP--AKLSVLDLSY-NRLDRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp CSSCCCSCCCCCTTCCEEECTT-SCCSSCCSSCC--SEEEEEECCS-SCCCSCCCTTTSCEEEEEECTTCT
T ss_pred CcccchhhhhhcCCCCEEECCC-CccChhhhhcc--CCceEEECCC-CCCCCChhHhhCCCCCEEeccCCC
Confidence 4432 2 457999999999 57888884434 7999999999 477877774457899999998876
No 76
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=4.9e-14 Score=121.58 Aligned_cols=207 Identities=17% Similarity=0.159 Sum_probs=159.0
Q ss_pred ccceeecccCCCCCcccCCCCCcc--CcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccc--------
Q 023528 2 KQDISRSSSGSTSRTPFSSENELP--ATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAER-------- 69 (281)
Q Consensus 2 ~~l~~l~~~~~~~l~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~-------- 69 (281)
+.+++|++++. .++.+ |.+.|. ++|++|++++|...+.++. +..+++ ++++.+.++..+..++..
T Consensus 30 ~~l~~L~Ls~N-~i~~i-~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~-l~~~l~~~~N~l~~l~~~~f~~l~~L 106 (350)
T 4ay9_X 30 RNAIELRFVLT-KLRVI-QKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK-LHEIRIEKANNLLYINPEAFQNLPNL 106 (350)
T ss_dssp TTCSEEEEESC-CCSEE-CTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTT-CCEEEEEEETTCCEECTTSBCCCTTC
T ss_pred CCCCEEEccCC-cCCCc-CHHHHcCCCCCCEEECcCCCCCCccChhHhhcchh-hhhhhcccCCcccccCchhhhhcccc
Confidence 35788899974 58899 555443 6999999999986566664 677888 777666555556666432
Q ss_pred --eeecCCCCCccCCC-CCCCCCCccEEEeccCcccccccc-cCcCC-CCccEEeecCCcCCcccCCC-CCCCCcCeEEe
Q 023528 70 --IWIFGCPNLESFPE-GGLPSTKLTRLTIWKCKNLKALPN-CIHNL-TSLLHLEIRECRSLVSFPED-GFPTNLQSLVV 143 (281)
Q Consensus 70 --L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~lp~-~~~~l-~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l 143 (281)
++++++. +..++. ......++..+++.++..+..+|. .+..+ ..++.|++++ ..++.++.. ...++|+.+.+
T Consensus 107 ~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~~f~~~~L~~l~l 184 (350)
T 4ay9_X 107 QYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNSAFNGTQLDELNL 184 (350)
T ss_dssp CEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTSSTTEEEEEEEC
T ss_pred ccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChhhccccchhHHhh
Confidence 6666653 444443 334456788999988888887764 44554 4688999998 577777765 34578999999
Q ss_pred cCCCCccccchhhhccCCCcceEEeecCCCCCccCCC-CCCCccEEeccCCCCCccccccCCCCCCcCEEeccC
Q 023528 144 DDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR-FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSN 216 (281)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 216 (281)
.+++.++.++...|..+++|++|++++ +.++.+|. .+.+|+.|.+.+++.++.+| ....+++|+.+++.+
T Consensus 185 ~~~n~l~~i~~~~f~~l~~L~~LdLs~--N~l~~lp~~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 185 SDNNNLEELPNDVFHGASGPVILDISR--TRIHSLPSYGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp TTCTTCCCCCTTTTTTEECCSEEECTT--SCCCCCCSSSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred ccCCcccCCCHHHhccCcccchhhcCC--CCcCccChhhhccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 988999999987889999999999998 67888887 77899999999999999999 678899999999875
No 77
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.58 E-value=7.9e-16 Score=131.01 Aligned_cols=228 Identities=12% Similarity=0.007 Sum_probs=158.6
Q ss_pred ccceeecccCCCCCcccCCC-CCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccc-----eeecCC
Q 023528 2 KQDISRSSSGSTSRTPFSSE-NELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAER-----IWIFGC 75 (281)
Q Consensus 2 ~~l~~l~~~~~~~l~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~-----L~l~~~ 75 (281)
++++.|+++++. ++.+++. ..-.++|++|++++|. +..++.++.+++ |++|+++++. +..++.. ++++++
T Consensus 34 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~-L~~L~Ls~n~-l~~l~~~~~L~~L~l~~n 109 (317)
T 3o53_A 34 WNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNV-LYETLDLESLST-LRTLDLNNNY-VQELLVGPSIETLHAANN 109 (317)
T ss_dssp GGCSEEECTTSC-CCCCCHHHHTTCTTCCEEECTTSC-CEEEEEETTCTT-CCEEECCSSE-EEEEEECTTCCEEECCSS
T ss_pred CCCCEEECcCCc-cCcCCHHHhhCCCcCCEEECCCCc-CCcchhhhhcCC-CCEEECcCCc-cccccCCCCcCEEECCCC
Confidence 478899999864 6666221 1222699999999987 665556888999 9999999985 4444322 777775
Q ss_pred CCCccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC---CCCCCcCeEEecCCCCcccc
Q 023528 76 PNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED---GFPTNLQSLVVDDLKISKPL 152 (281)
Q Consensus 76 ~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~---~~~~~L~~L~l~~~~~~~~~ 152 (281)
. +..++... +++|++|++++|......+..+..+++|++|+++++ .+..++.. ..+++|+.|++++|. ++.+
T Consensus 110 ~-l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~ 184 (317)
T 3o53_A 110 N-ISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDV 184 (317)
T ss_dssp C-CSEEEECC--CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEE
T ss_pred c-cCCcCccc--cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCc-Cccc
Confidence 3 44444332 568999999996543333457788999999999985 44444322 356899999999954 4444
Q ss_pred chhhhccCCCcceEEeecCCCCCccCCC---CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCc-ccccC-CC
Q 023528 153 FEWGLDRFACLRELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKL-KYFSK-QG 227 (281)
Q Consensus 153 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l-~~i~~-~~ 227 (281)
+ ....+++|++|++++ +.++.++. ..++|+.|++++ +.++.+|..+..+++|++|+++++.-. ..++. .+
T Consensus 185 ~--~~~~l~~L~~L~Ls~--N~l~~l~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 259 (317)
T 3o53_A 185 K--GQVVFAKLKTLDLSS--NKLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (317)
T ss_dssp E--CCCCCTTCCEEECCS--SCCCEECGGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHH
T ss_pred c--cccccccCCEEECCC--CcCCcchhhhcccCcccEEECcC-CcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHh
Confidence 4 345689999999998 56666654 457899999999 588889865688899999999996544 23332 11
Q ss_pred CCCCCcEEecCCCchH
Q 023528 228 LPKSLLRLGIDDCPLM 243 (281)
Q Consensus 228 ~~~~L~~L~l~~c~~l 243 (281)
..+.|+.+++.++..+
T Consensus 260 ~~~~L~~l~l~~~~~l 275 (317)
T 3o53_A 260 KNQRVQTVAKQTVKKL 275 (317)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred ccccceEEECCCchhc
Confidence 2345555555544433
No 78
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.54 E-value=1e-13 Score=117.54 Aligned_cols=147 Identities=16% Similarity=0.113 Sum_probs=85.0
Q ss_pred CCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcc--cCCC---CCCCCcCeEEecCCCCccccch---hhhcc
Q 023528 88 STKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVS--FPED---GFPTNLQSLVVDDLKISKPLFE---WGLDR 159 (281)
Q Consensus 88 ~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~--l~~~---~~~~~L~~L~l~~~~~~~~~~~---~~~~~ 159 (281)
+++|++|++++|......|..+..+++|++|+++++...+. ++.. ..+++|++|++++|. ++.++. ..+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhc
Confidence 55777777777544333345666777777777776543321 2111 355677777777743 333221 12356
Q ss_pred CCCcceEEeecCCCCCccC-CC------CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCCCCCCCC
Q 023528 160 FACLRELRIRGGCPDLVSS-PR------FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKSL 232 (281)
Q Consensus 160 l~~L~~L~l~~~~~~~~~~-~~------~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~L 232 (281)
+++|++|++++ +.+... |. .+++|++|++++ +.++.+|.... ++|++|++++| +++.+|....+++|
T Consensus 223 l~~L~~L~Ls~--N~l~~~~p~~~~~~~~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~~~~l~~L 296 (310)
T 4glp_A 223 GVQPHSLDLSH--NSLRATVNPSAPRCMWSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSSN-RLNRAPQPDELPEV 296 (310)
T ss_dssp TCCCSSEECTT--SCCCCCCCSCCSSCCCCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCSC-CCCSCCCTTSCCCC
T ss_pred CCCCCEEECCC--CCCCccchhhHHhccCcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCCC-cCCCCchhhhCCCc
Confidence 67777777776 334333 32 135777777777 46666663322 57777777773 55555553445677
Q ss_pred cEEecCCCc
Q 023528 233 LRLGIDDCP 241 (281)
Q Consensus 233 ~~L~l~~c~ 241 (281)
++|++++++
T Consensus 297 ~~L~L~~N~ 305 (310)
T 4glp_A 297 DNLTLDGNP 305 (310)
T ss_dssp SCEECSSTT
T ss_pred cEEECcCCC
Confidence 777776654
No 79
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.53 E-value=7.8e-13 Score=108.63 Aligned_cols=166 Identities=25% Similarity=0.263 Sum_probs=92.7
Q ss_pred cCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCC-CCCCCCCCccEEEeccCcccccc
Q 023528 27 TLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFP-EGGLPSTKLTRLTIWKCKNLKAL 105 (281)
Q Consensus 27 ~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~l 105 (281)
..+++++++.. +..+|. .++.++++|+++++. +..++ ..+..+++|++|++++|. +..+
T Consensus 15 ~~~~l~~~~~~-l~~~p~--~~~~~l~~L~L~~n~----------------l~~~~~~~~~~l~~L~~L~L~~n~-l~~~ 74 (251)
T 3m19_A 15 GKKEVDCQGKS-LDSVPS--GIPADTEKLDLQSTG----------------LATLSDATFRGLTKLTWLNLDYNQ-LQTL 74 (251)
T ss_dssp GGTEEECTTCC-CSSCCS--CCCTTCCEEECTTSC----------------CCCCCTTTTTTCTTCCEEECTTSC-CCCC
T ss_pred CCeEEecCCCC-ccccCC--CCCCCCCEEEccCCC----------------cCccCHhHhcCcccCCEEECCCCc-CCcc
Confidence 45666666544 556664 122337777776643 11221 223445677777777753 3333
Q ss_pred -cccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC--
Q 023528 106 -PNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR-- 180 (281)
Q Consensus 106 -p~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-- 180 (281)
+..+..+++|++|+++++ .+..++.. ..+++|++|++++| .++.++...+..+++|++|++++ +.+..++.
T Consensus 75 ~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~--N~l~~~~~~~ 150 (251)
T 3m19_A 75 SAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNT--NQLQSIPAGA 150 (251)
T ss_dssp CTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS--SCCCCCCTTT
T ss_pred CHhHhccCCcCCEEECCCC-cccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcC--CcCCccCHHH
Confidence 344667777777777763 44444432 45667777777663 44455544456666677777666 34444443
Q ss_pred --CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCC
Q 023528 181 --FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNC 217 (281)
Q Consensus 181 --~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c 217 (281)
..++|+.|++++ +.++.++... ..+++|++|+++++
T Consensus 151 ~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 151 FDKLTNLQTLSLST-NQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred cCcCcCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCC
Confidence 234566666666 4555555333 55666666666664
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.52 E-value=2.4e-15 Score=128.73 Aligned_cols=199 Identities=15% Similarity=0.083 Sum_probs=102.5
Q ss_pred CcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCcccccc
Q 023528 26 ATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKAL 105 (281)
Q Consensus 26 ~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l 105 (281)
+.++.|+++++..-...+.+..+++ |++|++++|..... .++.....+++|++|++++|......
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~-L~~L~L~~~~l~~~--------------~~~~~~~~~~~L~~L~L~~~~l~~~~ 134 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVS--------------TLHGILSQCSKLQNLSLEGLRLSDPI 134 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBC-CCEEECTTCEECHH--------------HHHHHHTTBCCCSEEECTTCBCCHHH
T ss_pred ccceEEEcCCccccccchhhccCCC-CCEEEccCCCcCHH--------------HHHHHHhhCCCCCEEeCcCcccCHHH
Confidence 4666666666552223334555666 77777776641111 01111223456677777666433344
Q ss_pred cccCcCCCCccEEeecCCcCCcc--cCC-CCCCCCcCeEEecCCCCcccc-chhhhccCC-CcceEEeecCCC-CCc--c
Q 023528 106 PNCIHNLTSLLHLEIRECRSLVS--FPE-DGFPTNLQSLVVDDLKISKPL-FEWGLDRFA-CLRELRIRGGCP-DLV--S 177 (281)
Q Consensus 106 p~~~~~l~~L~~L~l~~~~~l~~--l~~-~~~~~~L~~L~l~~~~~~~~~-~~~~~~~l~-~L~~L~l~~~~~-~~~--~ 177 (281)
+..+..+++|++|++++|..++. ++. ...+++|++|++++|..++.. ....+..++ +|++|++++ |. .++ .
T Consensus 135 ~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~-~~~~~~~~~ 213 (336)
T 2ast_B 135 VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG-YRKNLQKSD 213 (336)
T ss_dssp HHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS-CGGGSCHHH
T ss_pred HHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC-CcccCCHHH
Confidence 45555666777777766544432 222 134566777777666344321 122455666 677777766 42 222 1
Q ss_pred CCC---CCCCccEEeccCCCCCc-cccccCCCCCCcCEEeccCCCCccccc--CCCCCCCCcEEecCCC
Q 023528 178 SPR---FPASLTQLGISDMPTLK-CLSSVGENLTSLETLDLSNCPKLKYFS--KQGLPKSLLRLGIDDC 240 (281)
Q Consensus 178 ~~~---~~~~L~~L~l~~c~~l~-~l~~~~~~l~~L~~L~l~~c~~l~~i~--~~~~~~~L~~L~l~~c 240 (281)
++. ..++|+.|++++|..++ ..+.....+++|++|++++|..+.... ..+.+++|++|++.+|
T Consensus 214 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 214 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 221 34467777777654343 223233566677777777665332211 1112566777777666
No 81
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.52 E-value=5e-13 Score=122.01 Aligned_cols=176 Identities=24% Similarity=0.238 Sum_probs=103.1
Q ss_pred cceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCC
Q 023528 3 QDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFP 82 (281)
Q Consensus 3 ~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~ 82 (281)
+++.|+++++ .++.+ |... +++|++|++++|. +..+| +.+++ |++|+++++. +..+|
T Consensus 60 ~L~~L~Ls~n-~L~~l-p~~l-~~~L~~L~Ls~N~-l~~ip--~~l~~-L~~L~Ls~N~----------------l~~ip 116 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSL-PDNL-PPQITVLEITQNA-LISLP--ELPAS-LEYLDACDNR----------------LSTLP 116 (571)
T ss_dssp TCSEEECCSS-CCSCC-CSCC-CTTCSEEECCSSC-CSCCC--CCCTT-CCEEECCSSC----------------CSCCC
T ss_pred CccEEEeCCC-CCCcc-CHhH-cCCCCEEECcCCC-Ccccc--cccCC-CCEEEccCCC----------------CCCcc
Confidence 4566666654 35556 3332 2467777777665 55555 34555 7776666643 22233
Q ss_pred CCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCC
Q 023528 83 EGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFAC 162 (281)
Q Consensus 83 ~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 162 (281)
. +.. +|++|++++| .++.+|. .+++|++|+++++ .++.+|. .+++|+.|++++| .++.++. +. ++
T Consensus 117 ~-l~~--~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls~N-~L~~lp~--l~--~~ 181 (571)
T 3cvr_A 117 E-LPA--SLKHLDVDNN-QLTMLPE---LPALLEYINADNN-QLTMLPE--LPTSLEVLSVRNN-QLTFLPE--LP--ES 181 (571)
T ss_dssp C-CCT--TCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS-CCSCCCC--CC--TT
T ss_pred h-hhc--CCCEEECCCC-cCCCCCC---cCccccEEeCCCC-ccCcCCC--cCCCcCEEECCCC-CCCCcch--hh--CC
Confidence 3 222 6777777774 4455654 5677777777763 4555554 5667777777774 3444553 33 67
Q ss_pred cceEEeecCCCCCccCCCCCCCc-------cEEeccCCCCCccccccCCCCCCcCEEeccCCCC
Q 023528 163 LRELRIRGGCPDLVSSPRFPASL-------TQLGISDMPTLKCLSSVGENLTSLETLDLSNCPK 219 (281)
Q Consensus 163 L~~L~l~~~~~~~~~~~~~~~~L-------~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~ 219 (281)
|+.|++++ +.++.+|..+.+| +.|++++ +.++.+|..+..+++|++|++++|.-
T Consensus 182 L~~L~Ls~--N~L~~lp~~~~~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 182 LEALDVST--NLLESLPAVPVRNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp CCEEECCS--SCCSSCCCCC--------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred CCEEECcC--CCCCchhhHHHhhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCcC
Confidence 77777776 4555655533356 7777777 56777775455577777777777543
No 82
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.51 E-value=1.9e-13 Score=114.82 Aligned_cols=168 Identities=15% Similarity=0.155 Sum_probs=124.3
Q ss_pred CcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCcccccc
Q 023528 26 ATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKAL 105 (281)
Q Consensus 26 ~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l 105 (281)
++|+.|++++|. +..++.+..+++ |++|+++++. +..++. ...+++|++|++++| .+..+
T Consensus 46 ~~L~~L~l~~~~-i~~~~~~~~l~~-L~~L~L~~n~----------------l~~~~~-l~~l~~L~~L~l~~n-~l~~~ 105 (291)
T 1h6t_A 46 NSIDQIIANNSD-IKSVQGIQYLPN-VTKLFLNGNK----------------LTDIKP-LANLKNLGWLFLDEN-KVKDL 105 (291)
T ss_dssp HTCCEEECTTSC-CCCCTTGGGCTT-CCEEECCSSC----------------CCCCGG-GTTCTTCCEEECCSS-CCCCG
T ss_pred CcccEEEccCCC-cccChhHhcCCC-CCEEEccCCc----------------cCCCcc-cccCCCCCEEECCCC-cCCCC
Confidence 588999998876 777777888888 9999998864 222222 445678999999986 45555
Q ss_pred cccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC--CCC
Q 023528 106 PNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR--FPA 183 (281)
Q Consensus 106 p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~ 183 (281)
| .+..+++|++|+++++ .+..++....+++|+.|++++| .++.++ .+..+++|++|++++ +.+..++. ..+
T Consensus 106 ~-~l~~l~~L~~L~L~~n-~i~~~~~l~~l~~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~L~~--N~l~~~~~l~~l~ 178 (291)
T 1h6t_A 106 S-SLKDLKKLKSLSLEHN-GISDINGLVHLPQLESLYLGNN-KITDIT--VLSRLTKLDTLSLED--NQISDIVPLAGLT 178 (291)
T ss_dssp G-GGTTCTTCCEEECTTS-CCCCCGGGGGCTTCCEEECCSS-CCCCCG--GGGGCTTCSEEECCS--SCCCCCGGGTTCT
T ss_pred h-hhccCCCCCEEECCCC-cCCCChhhcCCCCCCEEEccCC-cCCcch--hhccCCCCCEEEccC--CccccchhhcCCC
Confidence 4 5888899999999885 5555655567889999999885 444443 578889999999998 45555543 566
Q ss_pred CccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccc
Q 023528 184 SLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYF 223 (281)
Q Consensus 184 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i 223 (281)
+|+.|++++ +.++.++ ....+++|+.|+++++ .+...
T Consensus 179 ~L~~L~L~~-N~i~~l~-~l~~l~~L~~L~l~~n-~i~~~ 215 (291)
T 1h6t_A 179 KLQNLYLSK-NHISDLR-ALAGLKNLDVLELFSQ-ECLNK 215 (291)
T ss_dssp TCCEEECCS-SCCCBCG-GGTTCTTCSEEEEEEE-EEECC
T ss_pred ccCEEECCC-CcCCCCh-hhccCCCCCEEECcCC-cccCC
Confidence 899999998 5788877 4678889999999985 34433
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.50 E-value=1.9e-12 Score=106.34 Aligned_cols=161 Identities=23% Similarity=0.263 Sum_probs=91.1
Q ss_pred eecccCCCCCcccCCCCCccCcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccceeecCCCCCccCC-
Q 023528 6 SRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFP- 82 (281)
Q Consensus 6 ~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~- 82 (281)
.++.++ ..++.+ |.+ ++++++.|+++++. +..++. ++.+++ |++|+++++. +..++
T Consensus 18 ~l~~~~-~~l~~~-p~~-~~~~l~~L~L~~n~-l~~~~~~~~~~l~~-L~~L~L~~n~----------------l~~~~~ 76 (251)
T 3m19_A 18 EVDCQG-KSLDSV-PSG-IPADTEKLDLQSTG-LATLSDATFRGLTK-LTWLNLDYNQ----------------LQTLSA 76 (251)
T ss_dssp EEECTT-CCCSSC-CSC-CCTTCCEEECTTSC-CCCCCTTTTTTCTT-CCEEECTTSC----------------CCCCCT
T ss_pred EEecCC-CCcccc-CCC-CCCCCCEEEccCCC-cCccCHhHhcCccc-CCEEECCCCc----------------CCccCH
Confidence 344443 345566 432 34577777777665 444432 566666 7777776643 11222
Q ss_pred CCCCCCCCccEEEeccCccccccc-ccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhcc
Q 023528 83 EGGLPSTKLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDR 159 (281)
Q Consensus 83 ~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~ 159 (281)
..+..+++|++|++++|. ++.+| ..+..+++|++|+++++ .++.++.. ..+++|+.|++++| .++.++...+..
T Consensus 77 ~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~ 153 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDK 153 (251)
T ss_dssp TTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred hHhccCCcCCEEECCCCc-ccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCc
Confidence 223345677777777743 33443 34566777777777763 45555543 34667777777764 444555445666
Q ss_pred CCCcceEEeecCCCCCccCCC----CCCCccEEeccC
Q 023528 160 FACLRELRIRGGCPDLVSSPR----FPASLTQLGISD 192 (281)
Q Consensus 160 l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~ 192 (281)
+++|++|++++ +.+..++. ..++|+.|++++
T Consensus 154 l~~L~~L~L~~--N~l~~~~~~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 154 LTNLQTLSLST--NQLQSVPHGAFDRLGKLQTITLFG 188 (251)
T ss_dssp CTTCCEEECCS--SCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CcCCCEEECCC--CcCCccCHHHHhCCCCCCEEEeeC
Confidence 67777777776 34444443 345677777776
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.50 E-value=7.3e-14 Score=117.43 Aligned_cols=185 Identities=17% Similarity=0.118 Sum_probs=139.0
Q ss_pred cCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCccccccc
Q 023528 27 TLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALP 106 (281)
Q Consensus 27 ~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp 106 (281)
.+..+.+.... +..+.....+++ |++|++++|. + ..++ .+..+++|++|++++| .+..++
T Consensus 25 ~~~~~~l~~~~-~~~~~~~~~l~~-L~~L~l~~~~-i---------------~~~~-~~~~l~~L~~L~L~~n-~l~~~~ 84 (291)
T 1h6t_A 25 ETIKDNLKKKS-VTDAVTQNELNS-IDQIIANNSD-I---------------KSVQ-GIQYLPNVTKLFLNGN-KLTDIK 84 (291)
T ss_dssp HHHHHHTTCSC-TTSEECHHHHHT-CCEEECTTSC-C---------------CCCT-TGGGCTTCCEEECCSS-CCCCCG
T ss_pred HHHHHHhcCCC-cccccchhhcCc-ccEEEccCCC-c---------------ccCh-hHhcCCCCCEEEccCC-ccCCCc
Confidence 34444554433 344444566888 9999998864 2 2222 1344679999999996 455665
Q ss_pred ccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC--CCCC
Q 023528 107 NCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR--FPAS 184 (281)
Q Consensus 107 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~ 184 (281)
. +..+++|++|+++++ .+..++....+++|+.|++++| .++.++ .+..+++|+.|++++ +.+..++. ..++
T Consensus 85 ~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~n-~i~~~~--~l~~l~~L~~L~l~~--n~l~~~~~l~~l~~ 157 (291)
T 1h6t_A 85 P-LANLKNLGWLFLDEN-KVKDLSSLKDLKKLKSLSLEHN-GISDIN--GLVHLPQLESLYLGN--NKITDITVLSRLTK 157 (291)
T ss_dssp G-GTTCTTCCEEECCSS-CCCCGGGGTTCTTCCEEECTTS-CCCCCG--GGGGCTTCCEEECCS--SCCCCCGGGGGCTT
T ss_pred c-cccCCCCCEEECCCC-cCCCChhhccCCCCCEEECCCC-cCCCCh--hhcCCCCCCEEEccC--CcCCcchhhccCCC
Confidence 4 889999999999985 5666776678899999999996 455554 588999999999998 45555544 5679
Q ss_pred ccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccCCCCCCCCcEEecCCCc
Q 023528 185 LTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSKQGLPKSLLRLGIDDCP 241 (281)
Q Consensus 185 L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~l~~c~ 241 (281)
|+.|++++ +.++.++. +..+++|++|++++| .++.++....+++|+.|++.+++
T Consensus 158 L~~L~L~~-N~l~~~~~-l~~l~~L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 158 LDTLSLED-NQISDIVP-LAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp CSEEECCS-SCCCCCGG-GTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEEEE
T ss_pred CCEEEccC-Cccccchh-hcCCCccCEEECCCC-cCCCChhhccCCCCCEEECcCCc
Confidence 99999999 57887774 788999999999995 67788765557899999998875
No 85
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.49 E-value=2.4e-13 Score=122.34 Aligned_cols=188 Identities=13% Similarity=0.018 Sum_probs=120.6
Q ss_pred CccceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCcc
Q 023528 1 MKQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLES 80 (281)
Q Consensus 1 ~~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~ 80 (281)
+++|+.|+++++. ++..++...+ ++|++|++++|. +..++. .++ |++|++++|. +..++
T Consensus 57 l~~L~~L~Ls~N~-l~~~~~l~~l-~~L~~L~Ls~N~-l~~l~~---~~~-L~~L~L~~N~-l~~~~------------- 115 (487)
T 3oja_A 57 FTKLELLNLSSNV-LYETLDLESL-STLRTLDLNNNY-VQELLV---GPS-IETLHAANNN-ISRVS------------- 115 (487)
T ss_dssp CTTCCEEECTTSC-CEEEEECTTC-TTCCEEECCSSE-EEEEEE---CTT-CCEEECCSSC-CCCEE-------------
T ss_pred CCCCCEEEeeCCC-CCCCcccccC-CCCCEEEecCCc-CCCCCC---CCC-cCEEECcCCc-CCCCC-------------
Confidence 4678999999865 6655353444 599999999986 666665 477 9999999875 22221
Q ss_pred CCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhc
Q 023528 81 FPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLD 158 (281)
Q Consensus 81 l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~ 158 (281)
.. .+++|++|++++|..-...|..+..+++|++|+++++......+.. ..+++|+.|++++|. ++.++ ...
T Consensus 116 --~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~--~~~ 188 (487)
T 3oja_A 116 --CS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVK--GQV 188 (487)
T ss_dssp --EC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEE--CCC
T ss_pred --cc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-ccccc--ccc
Confidence 11 1347777777775443434556667777777777774333223322 246777777777744 33333 244
Q ss_pred cCCCcceEEeecCCCCCccCCC---CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCC
Q 023528 159 RFACLRELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPK 219 (281)
Q Consensus 159 ~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~ 219 (281)
.+++|+.|++++ +.+..++. ..++|+.|++++ +.+..+|..+..+++|+.|++++|..
T Consensus 189 ~l~~L~~L~Ls~--N~l~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 189 VFAKLKTLDLSS--NKLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp CCTTCCEEECCS--SCCCEECGGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCCB
T ss_pred cCCCCCEEECCC--CCCCCCCHhHcCCCCccEEEecC-CcCcccchhhccCCCCCEEEcCCCCC
Confidence 577777777776 44555543 345777777777 56767774446777788888877543
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.49 E-value=2.9e-13 Score=114.67 Aligned_cols=143 Identities=20% Similarity=0.219 Sum_probs=101.8
Q ss_pred eeecCCCCCccCCCCCCCCCCccEEEeccCccccc--cc--ccCcCCCCccEEeecCCcCCcccCCC-----CCCCCcCe
Q 023528 70 IWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKA--LP--NCIHNLTSLLHLEIRECRSLVSFPED-----GFPTNLQS 140 (281)
Q Consensus 70 L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~--lp--~~~~~l~~L~~L~l~~~~~l~~l~~~-----~~~~~L~~ 140 (281)
++++++.-....+..+..+++|++|++++|...+. ++ ..+..+++|++|+++++ .++.++.. ..+++|++
T Consensus 150 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~ 228 (310)
T 4glp_A 150 LSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHS 228 (310)
T ss_dssp EEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSS
T ss_pred EEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCE
Confidence 44444433223334556788999999999864432 32 23468899999999986 45544431 35689999
Q ss_pred EEecCCCCccccchhhhccC---CCcceEEeecCCCCCccCCC-CCCCccEEeccCCCCCccccccCCCCCCcCEEeccC
Q 023528 141 LVVDDLKISKPLFEWGLDRF---ACLRELRIRGGCPDLVSSPR-FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSN 216 (281)
Q Consensus 141 L~l~~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 216 (281)
|++++|......|. .+..+ ++|++|++++ +.++.+|. .+++|+.|++++ +.++.+| ....+++|++|++++
T Consensus 229 L~Ls~N~l~~~~p~-~~~~~~~~~~L~~L~Ls~--N~l~~lp~~~~~~L~~L~Ls~-N~l~~~~-~~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 229 LDLSHNSLRATVNP-SAPRCMWSSALNSLNLSF--AGLEQVPKGLPAKLRVLDLSS-NRLNRAP-QPDELPEVDNLTLDG 303 (310)
T ss_dssp EECTTSCCCCCCCS-CCSSCCCCTTCCCEECCS--SCCCSCCSCCCSCCSCEECCS-CCCCSCC-CTTSCCCCSCEECSS
T ss_pred EECCCCCCCccchh-hHHhccCcCcCCEEECCC--CCCCchhhhhcCCCCEEECCC-CcCCCCc-hhhhCCCccEEECcC
Confidence 99999654443332 34444 7999999998 56778877 668999999999 6788876 357889999999999
Q ss_pred CC
Q 023528 217 CP 218 (281)
Q Consensus 217 c~ 218 (281)
+.
T Consensus 304 N~ 305 (310)
T 4glp_A 304 NP 305 (310)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 87
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.48 E-value=1.8e-12 Score=119.73 Aligned_cols=206 Identities=18% Similarity=0.134 Sum_probs=140.7
Q ss_pred cCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhc--cccc---------eeecCCCCCccCCCCCCCCCCccEEE
Q 023528 27 TLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLES--LAER---------IWIFGCPNLESFPEGGLPSTKLTRLT 95 (281)
Q Consensus 27 ~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~--~p~~---------L~l~~~~~l~~l~~~~~~~~~L~~L~ 95 (281)
.|+.+++.++. ....+....+++ |+.++++++..... .+.. +++..+. ...++.....+++|+.++
T Consensus 350 ~L~~l~l~~n~-~~~~~~~~~l~~-L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~-~~~~~~~~~~l~~L~~l~ 426 (635)
T 4g8a_A 350 SLKRLTFTSNK-GGNAFSEVDLPS-LEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG-VITMSSNFLGLEQLEHLD 426 (635)
T ss_dssp TCCEEEEESCC-SCCBCCCCBCTT-CCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS-EEEECSCCTTCTTCCEEE
T ss_pred hhhhccccccc-CCCCcccccccc-cccchhhccccccccccccchhhhhhhhhhhccccc-cccccccccccccccchh
Confidence 55555555444 222333455777 88888877643211 1110 3333332 233455566678999999
Q ss_pred eccCccccccc-ccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCC
Q 023528 96 IWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGC 172 (281)
Q Consensus 96 l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 172 (281)
+.++......+ ..+..++.++.++++++ .+...+.. ..+++++.+++++|..........+..+++|++|++++ |
T Consensus 427 l~~~~~~~~~~~~~~~~l~~l~~l~ls~n-~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~-N 504 (635)
T 4g8a_A 427 FQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ-C 504 (635)
T ss_dssp CTTSEEESTTSSCTTTTCTTCCEEECTTS-CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT-S
T ss_pred hhhcccccccccccccccccccccccccc-ccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCC-C
Confidence 98876555443 45678899999999875 44443332 56789999999998766655555788999999999998 4
Q ss_pred CCCccCCC----CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCCC---CCCCCcEEecCCC
Q 023528 173 PDLVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQG---LPKSLLRLGIDDC 240 (281)
Q Consensus 173 ~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~~---~~~~L~~L~l~~c 240 (281)
.+..++. ..++|+.|++++ +.++.++... +.+++|++|+++++ ++..++... ++++|++|+++++
T Consensus 505 -~L~~l~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 505 -QLEQLSPTAFNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp -CCCEECTTTTTTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred -ccCCcChHHHcCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCC
Confidence 5655543 467999999999 6788887555 88999999999995 676665533 3478999999763
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.48 E-value=5.8e-15 Score=126.36 Aligned_cols=215 Identities=15% Similarity=0.152 Sum_probs=142.2
Q ss_pred ccceeecccCCCCCcccCCCCCccCcCceeeccCCcCccc--ccc-CCCcCCcCcEEEecCCcchhccccceeecCCCCC
Q 023528 2 KQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAF--LSW-NGNLPRALKYLYVKDCSKLESLAERIWIFGCPNL 78 (281)
Q Consensus 2 ~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~-~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l 78 (281)
.+++.+++.+.. +...++...-.++|++|++++|. +.. ++. +..+++ |++|++++|......+
T Consensus 70 ~~l~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~-L~~L~L~~~~l~~~~~----------- 135 (336)
T 2ast_B 70 QGVIAFRCPRSF-MDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSK-LQNLSLEGLRLSDPIV----------- 135 (336)
T ss_dssp TTCSEEECTTCE-ECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCC-CSEEECTTCBCCHHHH-----------
T ss_pred ccceEEEcCCcc-ccccchhhccCCCCCEEEccCCC-cCHHHHHHHHhhCCC-CCEEeCcCcccCHHHH-----------
Confidence 345666666643 44332333333799999999987 442 443 678899 9999999985222221
Q ss_pred ccCCCCCCCCCCccEEEeccCcccc--cccccCcCCCCccEEeecCCcCCcc--cCCC-CCCC-CcCeEEecCCC-Ccc-
Q 023528 79 ESFPEGGLPSTKLTRLTIWKCKNLK--ALPNCIHNLTSLLHLEIRECRSLVS--FPED-GFPT-NLQSLVVDDLK-ISK- 150 (281)
Q Consensus 79 ~~l~~~~~~~~~L~~L~l~~c~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~--l~~~-~~~~-~L~~L~l~~~~-~~~- 150 (281)
..+..+++|++|++++|..++ .++..+..+++|++|++++|..++. ++.. ..++ +|++|++++|. .++
T Consensus 136 ----~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~ 211 (336)
T 2ast_B 136 ----NTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK 211 (336)
T ss_dssp ----HHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH
T ss_pred ----HHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH
Confidence 112235699999999986665 3566677899999999999745543 2322 4567 99999999985 342
Q ss_pred -ccchhhhccCCCcceEEeecCCCCCcc-CCC---CCCCccEEeccCCCCCccccc-cCCCCCCcCEEeccCCCCccccc
Q 023528 151 -PLFEWGLDRFACLRELRIRGGCPDLVS-SPR---FPASLTQLGISDMPTLKCLSS-VGENLTSLETLDLSNCPKLKYFS 224 (281)
Q Consensus 151 -~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~---~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~i~ 224 (281)
.++ ..+.++++|++|++++ |..+++ .+. ..++|++|++++|..+..... ..+.+++|++|++++| ++
T Consensus 212 ~~l~-~~~~~~~~L~~L~l~~-~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~ 284 (336)
T 2ast_B 212 SDLS-TLVRRCPNLVHLDLSD-SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-----VP 284 (336)
T ss_dssp HHHH-HHHHHCTTCSEEECTT-CTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SC
T ss_pred HHHH-HHHhhCCCCCEEeCCC-CCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cC
Confidence 233 3567899999999998 764432 222 457899999999864433211 2367899999999998 33
Q ss_pred CCCC---CCCCcEEecCCCc
Q 023528 225 KQGL---PKSLLRLGIDDCP 241 (281)
Q Consensus 225 ~~~~---~~~L~~L~l~~c~ 241 (281)
..++ ...++.|++.++.
T Consensus 285 ~~~~~~l~~~l~~L~l~~n~ 304 (336)
T 2ast_B 285 DGTLQLLKEALPHLQINCSH 304 (336)
T ss_dssp TTCHHHHHHHSTTSEESCCC
T ss_pred HHHHHHHHhhCcceEEeccc
Confidence 3222 2346677776444
No 89
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.46 E-value=1.9e-13 Score=125.88 Aligned_cols=169 Identities=16% Similarity=0.162 Sum_probs=128.6
Q ss_pred CcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCcccccc
Q 023528 26 ATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKAL 105 (281)
Q Consensus 26 ~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l 105 (281)
+.|+.|++++|. +..++.+..+++ |+.|+|++|. +.. ++. +..+++|+.|++++| .+..+
T Consensus 43 ~~L~~L~l~~n~-i~~l~~l~~l~~-L~~L~Ls~N~-l~~---------------~~~-l~~l~~L~~L~Ls~N-~l~~l 102 (605)
T 1m9s_A 43 NSIDQIIANNSD-IKSVQGIQYLPN-VTKLFLNGNK-LTD---------------IKP-LTNLKNLGWLFLDEN-KIKDL 102 (605)
T ss_dssp TTCCCCBCTTCC-CCCCTTGGGCTT-CCEEECTTSC-CCC---------------CGG-GGGCTTCCEEECCSS-CCCCC
T ss_pred CCCCEEECcCCC-CCCChHHccCCC-CCEEEeeCCC-CCC---------------Chh-hccCCCCCEEECcCC-CCCCC
Confidence 589999999876 777788888999 9999998864 222 222 345679999999996 45555
Q ss_pred cccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC--CCC
Q 023528 106 PNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR--FPA 183 (281)
Q Consensus 106 p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~ 183 (281)
| .+..+++|++|+++++ .+..++....+++|+.|++++|. +..++ .+..+++|+.|++++ | .+..++. .++
T Consensus 103 ~-~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~-l~~l~--~l~~l~~L~~L~Ls~-N-~l~~~~~l~~l~ 175 (605)
T 1m9s_A 103 S-SLKDLKKLKSLSLEHN-GISDINGLVHLPQLESLYLGNNK-ITDIT--VLSRLTKLDTLSLED-N-QISDIVPLAGLT 175 (605)
T ss_dssp T-TSTTCTTCCEEECTTS-CCCCCGGGGGCTTCSEEECCSSC-CCCCG--GGGSCTTCSEEECCS-S-CCCCCGGGTTCT
T ss_pred h-hhccCCCCCEEEecCC-CCCCCccccCCCccCEEECCCCc-cCCch--hhcccCCCCEEECcC-C-cCCCchhhccCC
Confidence 4 7889999999999985 55566656778999999999854 44443 688899999999998 4 4554433 567
Q ss_pred CccEEeccCCCCCccccccCCCCCCcCEEeccCCCCccccc
Q 023528 184 SLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFS 224 (281)
Q Consensus 184 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~ 224 (281)
+|+.|++++ +.+..++ .+..+++|+.|++++|. +...|
T Consensus 176 ~L~~L~Ls~-N~i~~l~-~l~~l~~L~~L~L~~N~-l~~~p 213 (605)
T 1m9s_A 176 KLQNLYLSK-NHISDLR-ALAGLKNLDVLELFSQE-CLNKP 213 (605)
T ss_dssp TCCEEECCS-SCCCBCG-GGTTCTTCSEEECCSEE-EECCC
T ss_pred CCCEEECcC-CCCCCCh-HHccCCCCCEEEccCCc-CcCCc
Confidence 899999999 4777776 56888999999999863 44443
No 90
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.45 E-value=6.2e-13 Score=105.21 Aligned_cols=148 Identities=16% Similarity=0.052 Sum_probs=99.5
Q ss_pred CcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCcccccc
Q 023528 26 ATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKAL 105 (281)
Q Consensus 26 ~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l 105 (281)
++|++|+++++. +..++.+..+++ |++|++++|. +..+ + .+..+++|++|++++|..-...
T Consensus 44 ~~L~~L~l~~n~-i~~l~~l~~l~~-L~~L~l~~n~-~~~~---------------~-~l~~l~~L~~L~l~~n~l~~~~ 104 (197)
T 4ezg_A 44 NSLTYITLANIN-VTDLTGIEYAHN-IKDLTINNIH-ATNY---------------N-PISGLSNLERLRIMGKDVTSDK 104 (197)
T ss_dssp HTCCEEEEESSC-CSCCTTGGGCTT-CSEEEEESCC-CSCC---------------G-GGTTCTTCCEEEEECTTCBGGG
T ss_pred CCccEEeccCCC-ccChHHHhcCCC-CCEEEccCCC-CCcc---------------h-hhhcCCCCCEEEeECCccCccc
Confidence 588888888775 667777777888 8888888763 2221 1 2233568888888886544445
Q ss_pred cccCcCCCCccEEeecCCcCCcccCC-CCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC--CC
Q 023528 106 PNCIHNLTSLLHLEIRECRSLVSFPE-DGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR--FP 182 (281)
Q Consensus 106 p~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~ 182 (281)
+..+..+++|++|+++++......+. ...+++|+.|++++|..++.++ .+..+++|++|++++ +.+.+++. ..
T Consensus 105 ~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~--n~i~~~~~l~~l 180 (197)
T 4ezg_A 105 IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQF--DGVHDYRGIEDF 180 (197)
T ss_dssp SCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTT--BCCCCCTTGGGC
T ss_pred ChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCC--CCCcChHHhccC
Confidence 66777888888888887533322222 2567788888888876566665 577888888888887 34555544 45
Q ss_pred CCccEEeccCCCCCc
Q 023528 183 ASLTQLGISDMPTLK 197 (281)
Q Consensus 183 ~~L~~L~l~~c~~l~ 197 (281)
++|+.|++++ +.++
T Consensus 181 ~~L~~L~l~~-N~i~ 194 (197)
T 4ezg_A 181 PKLNQLYAFS-QTIG 194 (197)
T ss_dssp SSCCEEEECB-C---
T ss_pred CCCCEEEeeC-cccC
Confidence 6788888887 4444
No 91
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.44 E-value=5.2e-12 Score=115.28 Aligned_cols=178 Identities=23% Similarity=0.287 Sum_probs=134.1
Q ss_pred CcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCcccccc
Q 023528 26 ATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKAL 105 (281)
Q Consensus 26 ~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l 105 (281)
.+|+.|+++++. +..+|.- -+++ |++|+++++. +..+| ..+++|++|++++| .++.+
T Consensus 59 ~~L~~L~Ls~n~-L~~lp~~-l~~~-L~~L~Ls~N~----------------l~~ip---~~l~~L~~L~Ls~N-~l~~i 115 (571)
T 3cvr_A 59 NQFSELQLNRLN-LSSLPDN-LPPQ-ITVLEITQNA----------------LISLP---ELPASLEYLDACDN-RLSTL 115 (571)
T ss_dssp TTCSEEECCSSC-CSCCCSC-CCTT-CSEEECCSSC----------------CSCCC---CCCTTCCEEECCSS-CCSCC
T ss_pred CCccEEEeCCCC-CCccCHh-HcCC-CCEEECcCCC----------------Ccccc---cccCCCCEEEccCC-CCCCc
Confidence 378889998876 6667651 1356 8888888754 33445 22579999999996 56668
Q ss_pred cccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCCCCCCc
Q 023528 106 PNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPRFPASL 185 (281)
Q Consensus 106 p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L 185 (281)
|. +.. +|++|+++++ .++.+|. .+++|+.|++++| .++.++. .+++|++|++++ +.++.+|...++|
T Consensus 116 p~-l~~--~L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~--N~L~~lp~l~~~L 182 (571)
T 3cvr_A 116 PE-LPA--SLKHLDVDNN-QLTMLPE--LPALLEYINADNN-QLTMLPE----LPTSLEVLSVRN--NQLTFLPELPESL 182 (571)
T ss_dssp CC-CCT--TCCEEECCSS-CCSCCCC--CCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCS--SCCSCCCCCCTTC
T ss_pred ch-hhc--CCCEEECCCC-cCCCCCC--cCccccEEeCCCC-ccCcCCC----cCCCcCEEECCC--CCCCCcchhhCCC
Confidence 87 554 9999999985 5666776 7899999999985 4555663 578999999998 5666677655799
Q ss_pred cEEeccCCCCCccccccCCCCCCc-------CEEeccCCCCcccccCC-CCCCCCcEEecCCCchHH
Q 023528 186 TQLGISDMPTLKCLSSVGENLTSL-------ETLDLSNCPKLKYFSKQ-GLPKSLLRLGIDDCPLME 244 (281)
Q Consensus 186 ~~L~l~~c~~l~~l~~~~~~l~~L-------~~L~l~~c~~l~~i~~~-~~~~~L~~L~l~~c~~l~ 244 (281)
+.|++++ +.++.+|. +.. +| ++|++++| .++.+|.. ..+++|++|++++++.-.
T Consensus 183 ~~L~Ls~-N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 183 EALDVST-NLLESLPA-VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp CEEECCS-SCCSSCCC-CC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred CEEECcC-CCCCchhh-HHH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 9999999 68889985 522 67 99999994 78888872 237899999999997543
No 92
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.44 E-value=9.6e-13 Score=121.18 Aligned_cols=169 Identities=14% Similarity=0.102 Sum_probs=99.1
Q ss_pred ccceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccC
Q 023528 2 KQDISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESF 81 (281)
Q Consensus 2 ~~l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l 81 (281)
++|+.|.++++. +..+ +.....++|+.|++++|. +..++.+..+++ |+.|+|++|. + ..+
T Consensus 43 ~~L~~L~l~~n~-i~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~l~~l~~-L~~L~Ls~N~-l---------------~~l 102 (605)
T 1m9s_A 43 NSIDQIIANNSD-IKSV-QGIQYLPNVTKLFLNGNK-LTDIKPLTNLKN-LGWLFLDENK-I---------------KDL 102 (605)
T ss_dssp TTCCCCBCTTCC-CCCC-TTGGGCTTCCEEECTTSC-CCCCGGGGGCTT-CCEEECCSSC-C---------------CCC
T ss_pred CCCCEEECcCCC-CCCC-hHHccCCCCCEEEeeCCC-CCCChhhccCCC-CCEEECcCCC-C---------------CCC
Confidence 456666666543 5555 322333577777777765 555555666777 7777777653 1 112
Q ss_pred CCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCC
Q 023528 82 PEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFA 161 (281)
Q Consensus 82 ~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~ 161 (281)
+ .+..+++|+.|++++|. +..+ ..+..+++|+.|+++++ .+..++....+++|+.|++++|. +..++. +..++
T Consensus 103 ~-~l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~ 175 (605)
T 1m9s_A 103 S-SLKDLKKLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLT 175 (605)
T ss_dssp T-TSTTCTTCCEEECTTSC-CCCC-GGGGGCTTCSEEECCSS-CCCCCGGGGSCTTCSEEECCSSC-CCCCGG--GTTCT
T ss_pred h-hhccCCCCCEEEecCCC-CCCC-ccccCCCccCEEECCCC-ccCCchhhcccCCCCEEECcCCc-CCCchh--hccCC
Confidence 2 23345677777777753 4444 35666777777777764 44444444566777777777643 333332 66677
Q ss_pred CcceEEeecCCCCCccCCC--CCCCccEEeccCCCCCcccc
Q 023528 162 CLRELRIRGGCPDLVSSPR--FPASLTQLGISDMPTLKCLS 200 (281)
Q Consensus 162 ~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~ 200 (281)
+|+.|++++ +.+..++. ..++|+.|++++| .+...|
T Consensus 176 ~L~~L~Ls~--N~i~~l~~l~~l~~L~~L~L~~N-~l~~~p 213 (605)
T 1m9s_A 176 KLQNLYLSK--NHISDLRALAGLKNLDVLELFSQ-ECLNKP 213 (605)
T ss_dssp TCCEEECCS--SCCCBCGGGTTCTTCSEEECCSE-EEECCC
T ss_pred CCCEEECcC--CCCCCChHHccCCCCCEEEccCC-cCcCCc
Confidence 777777776 34444443 4557777777773 444333
No 93
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.43 E-value=6.5e-13 Score=105.09 Aligned_cols=147 Identities=14% Similarity=0.096 Sum_probs=80.5
Q ss_pred CCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcC
Q 023528 46 GNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRS 125 (281)
Q Consensus 46 ~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~ 125 (281)
+.+++ |++|+++++. +..++ ....+++|++|++++| .+..+ ..+..+++|++|+++++..
T Consensus 41 ~~l~~-L~~L~l~~n~----------------i~~l~-~l~~l~~L~~L~l~~n-~~~~~-~~l~~l~~L~~L~l~~n~l 100 (197)
T 4ezg_A 41 AQMNS-LTYITLANIN----------------VTDLT-GIEYAHNIKDLTINNI-HATNY-NPISGLSNLERLRIMGKDV 100 (197)
T ss_dssp HHHHT-CCEEEEESSC----------------CSCCT-TGGGCTTCSEEEEESC-CCSCC-GGGTTCTTCCEEEEECTTC
T ss_pred hhcCC-ccEEeccCCC----------------ccChH-HHhcCCCCCEEEccCC-CCCcc-hhhhcCCCCCEEEeECCcc
Confidence 45666 7777776643 22333 2344567777777776 44444 3666777777777777433
Q ss_pred CcccC-CCCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC--CCCCccEEeccCCCCCcccccc
Q 023528 126 LVSFP-EDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR--FPASLTQLGISDMPTLKCLSSV 202 (281)
Q Consensus 126 l~~l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~~~ 202 (281)
....+ ....+++|+.|++++|......+ ..+..+++|++|++++ |..+++++. ..++|+.|++++ +.++.++ .
T Consensus 101 ~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~l~~l~~L~~L~L~~-n~~i~~~~~l~~l~~L~~L~l~~-n~i~~~~-~ 176 (197)
T 4ezg_A 101 TSDKIPNLSGLTSLTLLDISHSAHDDSIL-TKINTLPKVNSIDLSY-NGAITDIMPLKTLPELKSLNIQF-DGVHDYR-G 176 (197)
T ss_dssp BGGGSCCCTTCTTCCEEECCSSBCBGGGH-HHHTTCSSCCEEECCS-CTBCCCCGGGGGCSSCCEEECTT-BCCCCCT-T
T ss_pred CcccChhhcCCCCCCEEEecCCccCcHhH-HHHhhCCCCCEEEccC-CCCccccHhhcCCCCCCEEECCC-CCCcChH-H
Confidence 22222 23556777777777744333232 2466667777777766 433444433 234555555555 2344443 3
Q ss_pred CCCCCCcCEEeccC
Q 023528 203 GENLTSLETLDLSN 216 (281)
Q Consensus 203 ~~~l~~L~~L~l~~ 216 (281)
...+++|++|++++
T Consensus 177 l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 177 IEDFPKLNQLYAFS 190 (197)
T ss_dssp GGGCSSCCEEEECB
T ss_pred hccCCCCCEEEeeC
Confidence 34445555555554
No 94
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.41 E-value=3.2e-13 Score=111.82 Aligned_cols=161 Identities=19% Similarity=0.163 Sum_probs=104.0
Q ss_pred cCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCccccccc
Q 023528 27 TLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALP 106 (281)
Q Consensus 27 ~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp 106 (281)
++..++++++. +..++.+..+++ |++|+++++. + ..++ ....+++|++|++++| .+..++
T Consensus 20 ~l~~l~l~~~~-i~~~~~~~~l~~-L~~L~l~~n~-i---------------~~l~-~l~~l~~L~~L~L~~N-~i~~~~ 79 (263)
T 1xeu_A 20 NAVKQNLGKQS-VTDLVSQKELSG-VQNFNGDNSN-I---------------QSLA-GMQFFTNLKELHLSHN-QISDLS 79 (263)
T ss_dssp HHHHHHHTCSC-TTSEECHHHHTT-CSEEECTTSC-C---------------CCCT-TGGGCTTCCEEECCSS-CCCCCG
T ss_pred HHHHHHhcCCC-cccccchhhcCc-CcEEECcCCC-c---------------ccch-HHhhCCCCCEEECCCC-ccCCCh
Confidence 56666666654 555555666777 7777777653 1 2222 2334567788888775 455555
Q ss_pred ccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC--CCCC
Q 023528 107 NCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR--FPAS 184 (281)
Q Consensus 107 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~ 184 (281)
. +..+++|++|+++++ .++.++.... ++|+.|++++| .++.++ .+..+++|++|++++ +.++.++. ..++
T Consensus 80 ~-l~~l~~L~~L~L~~N-~l~~l~~~~~-~~L~~L~L~~N-~l~~~~--~l~~l~~L~~L~Ls~--N~i~~~~~l~~l~~ 151 (263)
T 1xeu_A 80 P-LKDLTKLEELSVNRN-RLKNLNGIPS-ACLSRLFLDNN-ELRDTD--SLIHLKNLEILSIRN--NKLKSIVMLGFLSK 151 (263)
T ss_dssp G-GTTCSSCCEEECCSS-CCSCCTTCCC-SSCCEEECCSS-CCSBSG--GGTTCTTCCEEECTT--SCCCBCGGGGGCTT
T ss_pred h-hccCCCCCEEECCCC-ccCCcCcccc-CcccEEEccCC-ccCCCh--hhcCcccccEEECCC--CcCCCChHHccCCC
Confidence 4 777778888888774 5555554444 77888888774 444444 467777888888877 44555544 4567
Q ss_pred ccEEeccCCCCCccccccCCCCCCcCEEeccCC
Q 023528 185 LTQLGISDMPTLKCLSSVGENLTSLETLDLSNC 217 (281)
Q Consensus 185 L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c 217 (281)
|+.|++++ +.++.++ ....+++|++|+++++
T Consensus 152 L~~L~L~~-N~i~~~~-~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 152 LEVLDLHG-NEITNTG-GLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp CCEEECTT-SCCCBCT-TSTTCCCCCEEEEEEE
T ss_pred CCEEECCC-CcCcchH-HhccCCCCCEEeCCCC
Confidence 88888887 4666663 4477788888888874
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.39 E-value=1.2e-11 Score=98.56 Aligned_cols=166 Identities=24% Similarity=0.261 Sum_probs=110.4
Q ss_pred CCCcccCCCCCccCcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCC-CCCCC
Q 023528 13 TSRTPFSSENELPATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEG-GLPST 89 (281)
Q Consensus 13 ~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~-~~~~~ 89 (281)
..++.+ |.. ++++|++|+++++. +..++. ++.+++ |++|+++++. +..++.. +..++
T Consensus 17 ~~l~~~-p~~-~~~~l~~L~l~~n~-l~~~~~~~~~~l~~-L~~L~l~~n~----------------l~~~~~~~~~~l~ 76 (208)
T 2o6s_A 17 QGRTSV-PTG-IPAQTTYLDLETNS-LKSLPNGVFDELTS-LTQLYLGGNK----------------LQSLPNGVFNKLT 76 (208)
T ss_dssp SCCSSC-CSC-CCTTCSEEECCSSC-CCCCCTTTTTTCTT-CSEEECCSSC----------------CCCCCTTTTTTCT
T ss_pred CCccCC-CCC-CCCCCcEEEcCCCc-cCcCChhhhccccc-CcEEECCCCc----------------cCccChhhcCCCC
Confidence 346667 433 44589999999876 666654 677888 9999888753 2233332 34567
Q ss_pred CccEEEeccCcccccccc-cCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceE
Q 023528 90 KLTRLTIWKCKNLKALPN-CIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLREL 166 (281)
Q Consensus 90 ~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 166 (281)
+|++|++++| .++.+|. .+..+++|++|+++++ .+..++.. ..+++|+.|++++| .++.++...+..+++|++|
T Consensus 77 ~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L 153 (208)
T 2o6s_A 77 SLTYLNLSTN-QLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYI 153 (208)
T ss_dssp TCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred CcCEEECCCC-cCCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEE
Confidence 8999999885 4555553 4678889999999874 55566553 56788888888884 4555555557778888888
Q ss_pred EeecCCCCCccCCCCCCCccEEeccCCCCCccccccCCCC
Q 023528 167 RIRGGCPDLVSSPRFPASLTQLGISDMPTLKCLSSVGENL 206 (281)
Q Consensus 167 ~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l 206 (281)
++++ +.-... +++++.|+++.+..-+.+|..++.+
T Consensus 154 ~l~~-N~~~~~----~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 154 WLHD-NPWDCT----CPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp ECCS-CCBCCC----TTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred EecC-CCeecC----CCCHHHHHHHHHhCCceeeccCccc
Confidence 8887 433222 3367777777744445677433433
No 96
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.36 E-value=3.4e-11 Score=97.46 Aligned_cols=134 Identities=25% Similarity=0.221 Sum_probs=80.8
Q ss_pred CCccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccch
Q 023528 77 NLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFE 154 (281)
Q Consensus 77 ~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~ 154 (281)
.+..+|.... ++|++|++++|......|..+..+++|++|+++++ .+..++.. ..+++|+.|++++| .++.++.
T Consensus 30 ~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~ 105 (229)
T 3e6j_A 30 RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN-QLTVLPS 105 (229)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC-cCCccCh
Confidence 4556665443 57888888885443333566777788888888774 45555543 45677777777774 4555554
Q ss_pred hhhccCCCcceEEeecCCCCCccCCC---CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCC
Q 023528 155 WGLDRFACLRELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNC 217 (281)
Q Consensus 155 ~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c 217 (281)
..+..+++|++|++++ +.+..+|. ..++|+.|++++ +.++.++... ..+++|++|+++++
T Consensus 106 ~~~~~l~~L~~L~Ls~--N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 106 AVFDRLVHLKELFMCC--NKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp TTTTTCTTCCEEECCS--SCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred hHhCcchhhCeEeccC--CcccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCC
Confidence 4566677777777776 44445544 344566666665 4555555332 55556666666553
No 97
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.31 E-value=5.7e-11 Score=96.12 Aligned_cols=100 Identities=25% Similarity=0.265 Sum_probs=45.5
Q ss_pred CCCCccEEEeccCcccccccc-cCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCc
Q 023528 87 PSTKLTRLTIWKCKNLKALPN-CIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACL 163 (281)
Q Consensus 87 ~~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 163 (281)
.+++|++|++++| .++.+|. .+..+++|++|+++++ .++.++.. ..+++|+.|++++| .++.++. .+..+++|
T Consensus 62 ~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~-~~~~l~~L 137 (229)
T 3e6j_A 62 SLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELFMCCN-KLTELPR-GIERLTHL 137 (229)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCSCCT-TGGGCTTC
T ss_pred CccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeEeccCC-cccccCc-ccccCCCC
Confidence 3445555555553 2333432 2345555555555542 33344332 33455555555552 2333432 34455555
Q ss_pred ceEEeecCCCCCccCCC----CCCCccEEeccC
Q 023528 164 RELRIRGGCPDLVSSPR----FPASLTQLGISD 192 (281)
Q Consensus 164 ~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~ 192 (281)
++|++++ +.+..++. ..++|+.|++.+
T Consensus 138 ~~L~L~~--N~l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 138 THLALDQ--NQLKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp SEEECCS--SCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CEEECCC--CcCCccCHHHHhCCCCCCEEEeeC
Confidence 5555554 33444332 234455555554
No 98
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.29 E-value=7.3e-12 Score=103.62 Aligned_cols=166 Identities=15% Similarity=0.124 Sum_probs=113.5
Q ss_pred ceeecccCCCCCcccCCCCCccCcCceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCC
Q 023528 4 DISRSSSGSTSRTPFSSENELPATLEHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPE 83 (281)
Q Consensus 4 l~~l~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~ 83 (281)
+..+++.+ ..++.+ +...-.++|++|++++|. +..++.+..+++ |++|+++++. +. .++.
T Consensus 21 l~~l~l~~-~~i~~~-~~~~~l~~L~~L~l~~n~-i~~l~~l~~l~~-L~~L~L~~N~-i~---------------~~~~ 80 (263)
T 1xeu_A 21 AVKQNLGK-QSVTDL-VSQKELSGVQNFNGDNSN-IQSLAGMQFFTN-LKELHLSHNQ-IS---------------DLSP 80 (263)
T ss_dssp HHHHHHTC-SCTTSE-ECHHHHTTCSEEECTTSC-CCCCTTGGGCTT-CCEEECCSSC-CC---------------CCGG
T ss_pred HHHHHhcC-CCcccc-cchhhcCcCcEEECcCCC-cccchHHhhCCC-CCEEECCCCc-cC---------------CChh
Confidence 44455554 335555 211222699999999885 777887888888 9999998864 22 2222
Q ss_pred CCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCc
Q 023528 84 GGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACL 163 (281)
Q Consensus 84 ~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 163 (281)
+..+++|++|++++| .++.+|. +.. ++|++|+++++ .++.++....+++|+.|++++| .++.++ .+..+++|
T Consensus 81 -l~~l~~L~~L~L~~N-~l~~l~~-~~~-~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~Ls~N-~i~~~~--~l~~l~~L 152 (263)
T 1xeu_A 81 -LKDLTKLEELSVNRN-RLKNLNG-IPS-ACLSRLFLDNN-ELRDTDSLIHLKNLEILSIRNN-KLKSIV--MLGFLSKL 152 (263)
T ss_dssp -GTTCSSCCEEECCSS-CCSCCTT-CCC-SSCCEEECCSS-CCSBSGGGTTCTTCCEEECTTS-CCCBCG--GGGGCTTC
T ss_pred -hccCCCCCEEECCCC-ccCCcCc-ccc-CcccEEEccCC-ccCCChhhcCcccccEEECCCC-cCCCCh--HHccCCCC
Confidence 345678899999885 4555653 333 88899999885 5666665567888999999885 455554 57788899
Q ss_pred ceEEeecCCCCCccCCC--CCCCccEEeccCCCCCcccc
Q 023528 164 RELRIRGGCPDLVSSPR--FPASLTQLGISDMPTLKCLS 200 (281)
Q Consensus 164 ~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~ 200 (281)
++|++++ +.+..+.. ..++|+.|++++ +.+...|
T Consensus 153 ~~L~L~~--N~i~~~~~l~~l~~L~~L~l~~-N~~~~~~ 188 (263)
T 1xeu_A 153 EVLDLHG--NEITNTGGLTRLKKVNWIDLTG-QKCVNEP 188 (263)
T ss_dssp CEEECTT--SCCCBCTTSTTCCCCCEEEEEE-EEEECCC
T ss_pred CEEECCC--CcCcchHHhccCCCCCEEeCCC-CcccCCc
Confidence 9999987 45555443 556888999888 4555544
No 99
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.29 E-value=1.1e-10 Score=93.98 Aligned_cols=133 Identities=15% Similarity=0.181 Sum_probs=82.9
Q ss_pred CCccCCCCCCCCCCccEEEeccCccccccc-ccCcCCCCccEEeecCCcCCcccCC--CCCCCCcCeEEecCCCCccccc
Q 023528 77 NLESFPEGGLPSTKLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVSFPE--DGFPTNLQSLVVDDLKISKPLF 153 (281)
Q Consensus 77 ~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~ 153 (281)
.++.+|.... ++|+.|+++++ .++.++ ..+..+++|++|+++++ .+..+.. ...+++|+.|++++ +.++.++
T Consensus 22 ~l~~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~ 96 (220)
T 2v9t_B 22 GLTEIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYG-NKITELP 96 (220)
T ss_dssp CCSSCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCS-SCCCCCC
T ss_pred CcCcCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCC-CcCCccC
Confidence 4555665443 47888888884 455554 36677788888888774 4444422 24567777777777 3455666
Q ss_pred hhhhccCCCcceEEeecCCCCCccCCC----CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCC
Q 023528 154 EWGLDRFACLRELRIRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNC 217 (281)
Q Consensus 154 ~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c 217 (281)
...+..+++|++|++++ +.+..++. ..++|+.|++++ +.++.++... ..+++|++|+++++
T Consensus 97 ~~~f~~l~~L~~L~L~~--N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 97 KSLFEGLFSLQLLLLNA--NKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp TTTTTTCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred HhHccCCCCCCEEECCC--CCCCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCC
Confidence 55566777777777776 44444432 345677777776 4566665443 56666777777664
No 100
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.28 E-value=6.2e-11 Score=102.51 Aligned_cols=123 Identities=20% Similarity=0.171 Sum_probs=55.7
Q ss_pred CCCccEEEeccCccccccc-ccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcc
Q 023528 88 STKLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLR 164 (281)
Q Consensus 88 ~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 164 (281)
+++|++|++++| .+..++ ..+..+++|++|+++++ .+..++.. ..+++|+.|++++| .+..+....+..+++|+
T Consensus 63 l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~ 139 (361)
T 2xot_A 63 LTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQ 139 (361)
T ss_dssp CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCC
T ss_pred ccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCC
Confidence 445555555553 233333 33455555555555552 34444332 33455555555553 23333223445555555
Q ss_pred eEEeecCCCCCccCCC-------CCCCccEEeccCCCCCccccccC-CCCCC--cCEEeccC
Q 023528 165 ELRIRGGCPDLVSSPR-------FPASLTQLGISDMPTLKCLSSVG-ENLTS--LETLDLSN 216 (281)
Q Consensus 165 ~L~l~~~~~~~~~~~~-------~~~~L~~L~l~~c~~l~~l~~~~-~~l~~--L~~L~l~~ 216 (281)
.|++++ +.+..++. ..++|+.|++++ +.++.+|... ..++. ++.|++.+
T Consensus 140 ~L~L~~--N~l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 140 KLYLSQ--NQISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp EEECCS--SCCCSCCGGGTC----CTTCCEEECCS-SCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred EEECCC--CcCCeeCHHHhcCcccCCcCCEEECCC-CCCCccCHHHhhhccHhhcceEEecC
Confidence 555555 33444332 134555555555 3455444222 33333 24455554
No 101
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.27 E-value=1.7e-10 Score=106.40 Aligned_cols=187 Identities=19% Similarity=0.104 Sum_probs=126.1
Q ss_pred CcCceeeccCCcCcccc---cc-CCCcCCcCcEEEecCCcchhccccc--------eeecCCCCCccCC-CCCCCCCCcc
Q 023528 26 ATLEHLEVTHCSNLAFL---SW-NGNLPRALKYLYVKDCSKLESLAER--------IWIFGCPNLESFP-EGGLPSTKLT 92 (281)
Q Consensus 26 ~~L~~L~l~~~~~l~~l---~~-~~~l~~~L~~L~l~~~~~l~~~p~~--------L~l~~~~~l~~l~-~~~~~~~~L~ 92 (281)
++|++|+++.+. +... +. ...+++ |+++++..+......+.. +++.++......+ .....+++++
T Consensus 371 ~~L~~L~ls~n~-l~~~~~~~~~~~~~~~-L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~ 448 (635)
T 4g8a_A 371 PSLEFLDLSRNG-LSFKGCCSQSDFGTIS-LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 448 (635)
T ss_dssp TTCCEEECCSSC-CBEEEECCHHHHSCSC-CCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred cccccchhhccc-cccccccccchhhhhh-hhhhhccccccccccccccccccccchhhhhccccccccccccccccccc
Confidence 589999998876 3221 11 344666 888887775422211110 4444433322222 2344577899
Q ss_pred EEEeccCcccccccccCcCCCCccEEeecCCcCCcccCC--CCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeec
Q 023528 93 RLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPE--DGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRG 170 (281)
Q Consensus 93 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 170 (281)
.++++.+......+..+..+++++.|+++++.....+.. ...+++|+.|++++| .++.++...+.++++|++|++++
T Consensus 449 ~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~ 527 (635)
T 4g8a_A 449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSH 527 (635)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTT
T ss_pred cccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCC
Confidence 999998655454556677889999999988655554332 256789999999985 55666555788999999999998
Q ss_pred CCCCCccCCC----CCCCccEEeccCCCCCccccccC-CCC-CCcCEEeccCCC
Q 023528 171 GCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENL-TSLETLDLSNCP 218 (281)
Q Consensus 171 ~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l-~~L~~L~l~~c~ 218 (281)
+.+..++. ..++|+.|++++ +.+..++... ..+ ++|++|++++++
T Consensus 528 --N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 528 --NNFFSLDTFPYKCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp --SCCCBCCCGGGTTCTTCCEEECTT-SCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred --CcCCCCChhHHhCCCCCCEEECCC-CcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 56666654 457899999999 5777765454 666 689999999854
No 102
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.26 E-value=1e-12 Score=114.70 Aligned_cols=33 Identities=9% Similarity=0.043 Sum_probs=23.5
Q ss_pred CcCceeeccCCcCcccc-----c-cCCCcCCcCcEEEecCC
Q 023528 26 ATLEHLEVTHCSNLAFL-----S-WNGNLPRALKYLYVKDC 60 (281)
Q Consensus 26 ~~L~~L~l~~~~~l~~l-----~-~~~~l~~~L~~L~l~~~ 60 (281)
++|++|++++|. +... + .+..+++ |++|++++|
T Consensus 32 ~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~-L~~L~Ls~~ 70 (386)
T 2ca6_A 32 DSVKEIVLSGNT-IGTEAARWLSENIASKKD-LEIAEFSDI 70 (386)
T ss_dssp SCCCEEECTTSE-ECHHHHHHHHHTTTTCTT-CCEEECCSC
T ss_pred CCccEEECCCCC-CCHHHHHHHHHHHHhCCC-ccEEeCccc
Confidence 678888888875 4422 1 2566788 888888886
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.24 E-value=2.7e-10 Score=91.55 Aligned_cols=141 Identities=16% Similarity=0.196 Sum_probs=89.5
Q ss_pred ceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCC-CCCCCCCccEEEeccCcccccccc
Q 023528 29 EHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPE-GGLPSTKLTRLTIWKCKNLKALPN 107 (281)
Q Consensus 29 ~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~lp~ 107 (281)
+.++.++.. ++.+|. .++.+|++|+++++. +..++. .+..+++|++|++++|..-...|.
T Consensus 14 ~~v~c~~~~-l~~iP~--~l~~~l~~L~l~~n~----------------i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~ 74 (220)
T 2v9t_B 14 NIVDCRGKG-LTEIPT--NLPETITEIRLEQNT----------------IKVIPPGAFSPYKKLRRIDLSNNQISELAPD 74 (220)
T ss_dssp TEEECTTSC-CSSCCS--SCCTTCCEEECCSSC----------------CCEECTTSSTTCTTCCEEECCSSCCCEECTT
T ss_pred CEEEcCCCC-cCcCCC--ccCcCCCEEECCCCc----------------CCCcCHhHhhCCCCCCEEECCCCcCCCcCHH
Confidence 456666543 666664 233348887777643 222222 334466888888888543333356
Q ss_pred cCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC----C
Q 023528 108 CIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR----F 181 (281)
Q Consensus 108 ~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~ 181 (281)
.+..+++|++|++++ ..++.++.. ..+++|+.|++++| .++.++...+..+++|++|++++ +.++.++. .
T Consensus 75 ~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~--N~l~~~~~~~~~~ 150 (220)
T 2v9t_B 75 AFQGLRSLNSLVLYG-NKITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYD--NKLQTIAKGTFSP 150 (220)
T ss_dssp TTTTCSSCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS--SCCSCCCTTTTTT
T ss_pred HhhCCcCCCEEECCC-CcCCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCC--CcCCEECHHHHhC
Confidence 777888888888887 356666653 45678888888874 44455444677788888888887 45555543 3
Q ss_pred CCCccEEeccC
Q 023528 182 PASLTQLGISD 192 (281)
Q Consensus 182 ~~~L~~L~l~~ 192 (281)
.++|+.|++++
T Consensus 151 l~~L~~L~L~~ 161 (220)
T 2v9t_B 151 LRAIQTMHLAQ 161 (220)
T ss_dssp CTTCCEEECCS
T ss_pred CCCCCEEEeCC
Confidence 55778888877
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.24 E-value=4e-10 Score=89.59 Aligned_cols=81 Identities=30% Similarity=0.379 Sum_probs=39.5
Q ss_pred CCCCccEEEeccCcccccccc-cCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCc
Q 023528 87 PSTKLTRLTIWKCKNLKALPN-CIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACL 163 (281)
Q Consensus 87 ~~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 163 (281)
.+++|++|+++++ .++.+|. .+..+++|++|+++++ .+..++.. ..+++|+.|++++| .++.++...+..+++|
T Consensus 50 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 126 (208)
T 2o6s_A 50 ELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQL 126 (208)
T ss_dssp TCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred ccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcC
Confidence 3456666666663 3334432 2355566666666553 33344332 34455555555553 3333333334455555
Q ss_pred ceEEeec
Q 023528 164 RELRIRG 170 (281)
Q Consensus 164 ~~L~l~~ 170 (281)
++|++++
T Consensus 127 ~~L~l~~ 133 (208)
T 2o6s_A 127 KDLRLYQ 133 (208)
T ss_dssp CEEECCS
T ss_pred CEEECCC
Confidence 5555554
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.21 E-value=1.2e-10 Score=100.69 Aligned_cols=156 Identities=23% Similarity=0.184 Sum_probs=115.3
Q ss_pred CCccCCCCCCCCCCccEEEeccCcccccccc-cCc-CCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCcccc
Q 023528 77 NLESFPEGGLPSTKLTRLTIWKCKNLKALPN-CIH-NLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPL 152 (281)
Q Consensus 77 ~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~-~~~-~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~ 152 (281)
.+..+|.... +.++.|+++++ .+..++. .+. .+++|++|+++++ .+..++.. ..+++|+.|++++| .++.+
T Consensus 29 ~l~~iP~~~~--~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~ 103 (361)
T 2xot_A 29 QLPNVPQSLP--SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN-HLHTL 103 (361)
T ss_dssp CCSSCCSSCC--TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEE
T ss_pred CcCccCccCC--CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC-cCCcC
Confidence 4556665443 37899999995 5666654 455 8999999999984 66666643 67899999999995 56677
Q ss_pred chhhhccCCCcceEEeecCCCCCccCCC----CCCCccEEeccCCCCCccccccC----CCCCCcCEEeccCCCCccccc
Q 023528 153 FEWGLDRFACLRELRIRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVG----ENLTSLETLDLSNCPKLKYFS 224 (281)
Q Consensus 153 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~----~~l~~L~~L~l~~c~~l~~i~ 224 (281)
+...+..+++|+.|++++ +.+..++. ..++|+.|++++ +.++.+|... ..+++|++|++++ +.++.++
T Consensus 104 ~~~~~~~l~~L~~L~L~~--N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~ 179 (361)
T 2xot_A 104 DEFLFSDLQALEVLLLYN--NHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLP 179 (361)
T ss_dssp CTTTTTTCTTCCEEECCS--SCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCS-SCCCCCC
T ss_pred CHHHhCCCcCCCEEECCC--CcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCC-CCCCccC
Confidence 666788999999999998 55655532 567999999999 6888888654 4689999999999 5677776
Q ss_pred CCCC--CCC--CcEEecCCCc
Q 023528 225 KQGL--PKS--LLRLGIDDCP 241 (281)
Q Consensus 225 ~~~~--~~~--L~~L~l~~c~ 241 (281)
...+ ++. ++.|++.+++
T Consensus 180 ~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 180 LTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp HHHHHHSCHHHHTTEECCSSC
T ss_pred HHHhhhccHhhcceEEecCCC
Confidence 4222 333 4778888744
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.21 E-value=4e-10 Score=90.58 Aligned_cols=133 Identities=15% Similarity=0.182 Sum_probs=85.7
Q ss_pred CCccCCCCCCCCCCccEEEeccCcccccc-c-ccCcCCCCccEEeecCCcCCcccCC--CCCCCCcCeEEecCCCCcccc
Q 023528 77 NLESFPEGGLPSTKLTRLTIWKCKNLKAL-P-NCIHNLTSLLHLEIRECRSLVSFPE--DGFPTNLQSLVVDDLKISKPL 152 (281)
Q Consensus 77 ~l~~l~~~~~~~~~L~~L~l~~c~~l~~l-p-~~~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~ 152 (281)
.+..+|.... +.+++|+++++ .+..+ | ..+..+++|++|+++++ .++.++. ...+++|+.|++++| .++.+
T Consensus 22 ~l~~iP~~~~--~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~ 96 (220)
T 2v70_A 22 KLNKIPEHIP--QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN-RLENV 96 (220)
T ss_dssp CCSSCCSCCC--TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCCC
T ss_pred CcccCccCCC--CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC-ccCcc
Confidence 3555665443 36788888885 44544 3 23677888888888874 4555554 256778888888874 44555
Q ss_pred chhhhccCCCcceEEeecCCCCCccCC-C---CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCC
Q 023528 153 FEWGLDRFACLRELRIRGGCPDLVSSP-R---FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNC 217 (281)
Q Consensus 153 ~~~~~~~l~~L~~L~l~~~~~~~~~~~-~---~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c 217 (281)
+...+..+++|++|++++ +.+..++ . ..++|+.|++++ +.++.++... ..+++|++|+++++
T Consensus 97 ~~~~~~~l~~L~~L~Ls~--N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 97 QHKMFKGLESLKTLMLRS--NRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CGGGGTTCSSCCEEECTT--SCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CHhHhcCCcCCCEEECCC--CcCCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecCc
Confidence 555677788888888887 4444442 2 345677777777 4566653233 66777777777764
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.19 E-value=6.4e-10 Score=89.35 Aligned_cols=101 Identities=11% Similarity=0.121 Sum_probs=54.3
Q ss_pred CCCCccEEEeccCccccccc-ccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCc
Q 023528 87 PSTKLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACL 163 (281)
Q Consensus 87 ~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 163 (281)
.+++|++|+++++. ++.++ ..+..+++|++|+++++ .+..++.. ..+++|++|++++| .++.++...+..+++|
T Consensus 55 ~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 131 (220)
T 2v70_A 55 KLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSV 131 (220)
T ss_dssp GCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTC
T ss_pred cCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccC
Confidence 35566666666643 44443 35566666666666653 34444332 34566666666663 3333333345566666
Q ss_pred ceEEeecCCCCCccC-CC---CCCCccEEeccC
Q 023528 164 RELRIRGGCPDLVSS-PR---FPASLTQLGISD 192 (281)
Q Consensus 164 ~~L~l~~~~~~~~~~-~~---~~~~L~~L~l~~ 192 (281)
++|++++ +.+..+ +. ..++|+.|++++
T Consensus 132 ~~L~L~~--N~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 132 RLLSLYD--NQITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp SEEECTT--SCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEECCC--CcCCEECHHHhcCCCCCCEEEecC
Confidence 6666665 344444 22 344566666666
No 108
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.17 E-value=2.4e-10 Score=87.72 Aligned_cols=126 Identities=18% Similarity=0.160 Sum_probs=77.7
Q ss_pred ccCcCceeeccCCcCcc--cccc-CCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCc
Q 023528 24 LPATLEHLEVTHCSNLA--FLSW-NGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCK 100 (281)
Q Consensus 24 ~~~~L~~L~l~~~~~l~--~l~~-~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~ 100 (281)
.+++|++|++++|. +. .+|. +..+++ |++|++++|. +. .+ ..+..+++|++|++++|.
T Consensus 22 ~~~~L~~L~l~~n~-l~~~~i~~~~~~l~~-L~~L~l~~n~-l~---------------~~-~~~~~l~~L~~L~Ls~N~ 82 (168)
T 2ell_A 22 TPAAVRELVLDNCK-SNDGKIEGLTAEFVN-LEFLSLINVG-LI---------------SV-SNLPKLPKLKKLELSENR 82 (168)
T ss_dssp CTTSCSEEECCSCB-CBTTBCSSCCGGGGG-CCEEEEESSC-CC---------------CC-SSCCCCSSCCEEEEESCC
T ss_pred CcccCCEEECCCCC-CChhhHHHHHHhCCC-CCEEeCcCCC-CC---------------Ch-hhhccCCCCCEEECcCCc
Confidence 44678888888776 44 5555 466777 8888887754 11 12 333446678888888865
Q ss_pred ccccccccCcCCCCccEEeecCCcCCcccC---CCCCCCCcCeEEecCCCCccccch---hhhccCCCcceEEeec
Q 023528 101 NLKALPNCIHNLTSLLHLEIRECRSLVSFP---EDGFPTNLQSLVVDDLKISKPLFE---WGLDRFACLRELRIRG 170 (281)
Q Consensus 101 ~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~---~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~l~~L~~L~l~~ 170 (281)
....+|..+..+++|++|+++++ .++.++ ....+++|+.|++++|. +...+. ..+..+++|++|++++
T Consensus 83 l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 83 IFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp CCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred CchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCC
Confidence 43335555556778888888775 444443 22456677777777643 333332 3456666777776666
No 109
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.17 E-value=2.5e-10 Score=87.65 Aligned_cols=130 Identities=18% Similarity=0.153 Sum_probs=74.9
Q ss_pred CCccEEEeccCccc-ccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcceEE
Q 023528 89 TKLTRLTIWKCKNL-KALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELR 167 (281)
Q Consensus 89 ~~L~~L~l~~c~~l-~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 167 (281)
++|+.|++++|... ..+|..+..+++|++|+++++. +..+.....+++|+.|++++|.....++ ..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENRIFGGLD-MLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCCCCSCCC-HHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCcCchHHH-HHHhhCCCCCEEe
Confidence 46677777765422 2566556666777777776643 4444333556666777776644333233 2345567777777
Q ss_pred eecCCCCCccCC--C---CCCCccEEeccCCCCCccccc----cCCCCCCcCEEeccCCCCccccc
Q 023528 168 IRGGCPDLVSSP--R---FPASLTQLGISDMPTLKCLSS----VGENLTSLETLDLSNCPKLKYFS 224 (281)
Q Consensus 168 l~~~~~~~~~~~--~---~~~~L~~L~l~~c~~l~~l~~----~~~~l~~L~~L~l~~c~~l~~i~ 224 (281)
+++ +.++.++ . ..++|+.|++++ +.+..++. .+..+++|++|++++|. +.++|
T Consensus 102 Ls~--N~l~~~~~~~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~ 163 (168)
T 2ell_A 102 LSG--NKLKDISTLEPLKKLECLKSLDLFN-CEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAP 163 (168)
T ss_dssp CBS--SSCCSSGGGGGGSSCSCCCEEECCS-SGGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCC
T ss_pred ccC--CccCcchhHHHHhcCCCCCEEEeeC-CcCcchHHHHHHHHHhCccCcEecCCCCC-hhhcc
Confidence 776 3444443 1 345667777776 45666653 22677777777777753 44444
No 110
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.16 E-value=5.5e-12 Score=109.16 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=24.2
Q ss_pred ccCcCceeeccCCcCcccccc------CCCcC-CcCcEEEecCCc
Q 023528 24 LPATLEHLEVTHCSNLAFLSW------NGNLP-RALKYLYVKDCS 61 (281)
Q Consensus 24 ~~~~L~~L~l~~~~~l~~l~~------~~~l~-~~L~~L~l~~~~ 61 (281)
.+++|++|++++|. +...+. +..++ + |++|++++|.
T Consensus 20 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~-L~~L~Ls~N~ 62 (362)
T 3goz_A 20 IPHGVTSLDLSLNN-LYSISTVELIQAFANTPAS-VTSLNLSGNS 62 (362)
T ss_dssp SCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTT-CCEEECCSSC
T ss_pred CCCCceEEEccCCC-CChHHHHHHHHHHHhCCCc-eeEEECcCCC
Confidence 44568888888776 554432 55666 6 8888888874
No 111
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.15 E-value=1.7e-11 Score=112.56 Aligned_cols=127 Identities=12% Similarity=0.027 Sum_probs=64.7
Q ss_pred CCCCccEEeecCCcCCcccCC--C-CCCCCcCeEEecC---CCCccccc-----hhhhccCCCcceEEeecCCCC-CccC
Q 023528 111 NLTSLLHLEIRECRSLVSFPE--D-GFPTNLQSLVVDD---LKISKPLF-----EWGLDRFACLRELRIRGGCPD-LVSS 178 (281)
Q Consensus 111 ~l~~L~~L~l~~~~~l~~l~~--~-~~~~~L~~L~l~~---~~~~~~~~-----~~~~~~l~~L~~L~l~~~~~~-~~~~ 178 (281)
.+++|++|++.. ..++.... . ..+++|++|++.+ |+.++..+ ...+..+++|+.|+++. |.. +.+.
T Consensus 376 ~~~~L~~L~l~~-~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~-~~~~l~~~ 453 (592)
T 3ogk_B 376 GCQELEYMAVYV-SDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL-RQGGLTDL 453 (592)
T ss_dssp HCTTCSEEEEEE-SCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEEC-CGGGCCHH
T ss_pred hCccCeEEEeec-CCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEec-CCCCccHH
Confidence 456666666632 23321110 0 1255677777763 34444321 11245567777777765 442 1110
Q ss_pred -C----CCCCCccEEeccCCCCCcc--ccccCCCCCCcCEEeccCCCCccc--ccCC-CCCCCCcEEecCCCc
Q 023528 179 -P----RFPASLTQLGISDMPTLKC--LSSVGENLTSLETLDLSNCPKLKY--FSKQ-GLPKSLLRLGIDDCP 241 (281)
Q Consensus 179 -~----~~~~~L~~L~l~~c~~l~~--l~~~~~~l~~L~~L~l~~c~~l~~--i~~~-~~~~~L~~L~l~~c~ 241 (281)
. ...++|+.|++++| .++. ++.....+++|++|++++|. ++. ++.. ..+++|++|++++|.
T Consensus 454 ~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 454 GLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 0 03456777777764 3432 23111566777777777775 432 1211 125677777777776
No 112
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.13 E-value=4.5e-12 Score=116.48 Aligned_cols=62 Identities=18% Similarity=0.132 Sum_probs=36.5
Q ss_pred CccceeecccCCCCCcc-----cCCCCCccCcCceeeccCCc-Ccc--cccc-CCCcCCcCcEEEecCCcchh
Q 023528 1 MKQDISRSSSGSTSRTP-----FSSENELPATLEHLEVTHCS-NLA--FLSW-NGNLPRALKYLYVKDCSKLE 64 (281)
Q Consensus 1 ~~~l~~l~~~~~~~l~~-----~~~~~~~~~~L~~L~l~~~~-~l~--~l~~-~~~l~~~L~~L~l~~~~~l~ 64 (281)
+++|++|++++|. ++. ++......++|++|++++|. .+. .+.. ...+++ |++|++++|..+.
T Consensus 155 ~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~-L~~L~L~~~~~~~ 225 (594)
T 2p1m_B 155 CRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPN-LKSLKLNRAVPLE 225 (594)
T ss_dssp CTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTT-CCEEECCTTSCHH
T ss_pred CCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCC-CcEEecCCCCcHH
Confidence 3678889998876 332 21111123589999998876 111 1111 234577 8888888874443
No 113
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.13 E-value=2.4e-12 Score=114.67 Aligned_cols=57 Identities=14% Similarity=0.040 Sum_probs=32.6
Q ss_pred ccceeecccCCCCCcccCCCC--CccCcCceeeccCCcCccc-----ccc-CCCcCCcCcEEEecCCc
Q 023528 2 KQDISRSSSGSTSRTPFSSEN--ELPATLEHLEVTHCSNLAF-----LSW-NGNLPRALKYLYVKDCS 61 (281)
Q Consensus 2 ~~l~~l~~~~~~~l~~~~~~~--~~~~~L~~L~l~~~~~l~~-----l~~-~~~l~~~L~~L~l~~~~ 61 (281)
+++++|+++++. ++..+... ...++|++|++++|. +.. ++. +..+++ |++|+++++.
T Consensus 3 ~~l~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~-L~~L~Ls~n~ 67 (461)
T 1z7x_W 3 LDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPA-LAELNLRSNE 67 (461)
T ss_dssp EEEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTT-CCEEECTTCC
T ss_pred ccceehhhhhcc-cCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCC-cCEEeCCCCc
Confidence 456777777543 54331111 112578888888776 442 222 455677 8888887765
No 114
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.11 E-value=8.3e-12 Score=108.91 Aligned_cols=224 Identities=17% Similarity=0.073 Sum_probs=127.3
Q ss_pred CccceeecccCCCCCcc-----cCCCCCccCcCceeeccCCc--Ccc-cccc--------CCCcCCcCcEEEecCCcchh
Q 023528 1 MKQDISRSSSGSTSRTP-----FSSENELPATLEHLEVTHCS--NLA-FLSW--------NGNLPRALKYLYVKDCSKLE 64 (281)
Q Consensus 1 ~~~l~~l~~~~~~~l~~-----~~~~~~~~~~L~~L~l~~~~--~l~-~l~~--------~~~l~~~L~~L~l~~~~~l~ 64 (281)
+++++.|+++++. ++. ++....-.++|++|++++|. .+. .+|. +..+++ |++|+++++..-.
T Consensus 31 ~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~-L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 31 DDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK-LHTVRLSDNAFGP 108 (386)
T ss_dssp CSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTT-CCEEECCSCCCCT
T ss_pred CCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCc-ccEEECCCCcCCH
Confidence 3568888888864 442 10001123699999999974 222 2222 367888 9999999875221
Q ss_pred ccccceeecCCCCCccCCCCCCCCCCccEEEeccCcccc----cccccCcCC---------CCccEEeecCCcCC-cccC
Q 023528 65 SLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLK----ALPNCIHNL---------TSLLHLEIRECRSL-VSFP 130 (281)
Q Consensus 65 ~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~----~lp~~~~~l---------~~L~~L~l~~~~~l-~~l~ 130 (281)
. ....++..+..+++|++|++++|..-. .++..+..+ ++|++|+++++... ..++
T Consensus 109 ~-----------~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 177 (386)
T 2ca6_A 109 T-----------AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177 (386)
T ss_dssp T-----------THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH
T ss_pred H-----------HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH
Confidence 0 011122222335678888888865321 222233334 78888888775322 2222
Q ss_pred C----CCCCCCcCeEEecCCCCccc----cchhhhccCCCcceEEeecCCCCC-----ccCCC---CCCCccEEeccCCC
Q 023528 131 E----DGFPTNLQSLVVDDLKISKP----LFEWGLDRFACLRELRIRGGCPDL-----VSSPR---FPASLTQLGISDMP 194 (281)
Q Consensus 131 ~----~~~~~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~-----~~~~~---~~~~L~~L~l~~c~ 194 (281)
. ...+++|++|++++|..... +....+.++++|++|++++ |. + ..++. ..++|++|++++|
T Consensus 178 ~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~-n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n- 254 (386)
T 2ca6_A 178 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD-NT-FTHLGSSALAIALKSWPNLRELGLNDC- 254 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCS-SC-CHHHHHHHHHHHGGGCTTCCEEECTTC-
T ss_pred HHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcC-CC-CCcHHHHHHHHHHccCCCcCEEECCCC-
Confidence 1 13456888888887643211 2222466777888888887 43 3 22332 3457888888884
Q ss_pred CCcc-----ccccC--CCCCCcCEEeccCCCCccc-----ccCC--CCCCCCcEEecCCCc
Q 023528 195 TLKC-----LSSVG--ENLTSLETLDLSNCPKLKY-----FSKQ--GLPKSLLRLGIDDCP 241 (281)
Q Consensus 195 ~l~~-----l~~~~--~~l~~L~~L~l~~c~~l~~-----i~~~--~~~~~L~~L~l~~c~ 241 (281)
.++. ++... +.+++|++|++++|. ++. ++.. ..+++|++|++.+|+
T Consensus 255 ~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 255 LLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 4543 23222 337788888888853 444 4432 125778888887775
No 115
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.11 E-value=1.4e-11 Score=106.51 Aligned_cols=218 Identities=16% Similarity=0.093 Sum_probs=129.3
Q ss_pred ccceeecccCCCCCcccCCC----C---CccCcCceeeccCCcCcccccc--CCCc-----CCcCcEEEecCCcchhccc
Q 023528 2 KQDISRSSSGSTSRTPFSSE----N---ELPATLEHLEVTHCSNLAFLSW--NGNL-----PRALKYLYVKDCSKLESLA 67 (281)
Q Consensus 2 ~~l~~l~~~~~~~l~~~~~~----~---~~~~~L~~L~l~~~~~l~~l~~--~~~l-----~~~L~~L~l~~~~~l~~~p 67 (281)
+.++.|+++++. ++.. +. . .++.+|++|++++|. +..... +..+ ++ |++|++++|. +...+
T Consensus 22 ~~L~~L~Ls~n~-l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~-L~~L~Ls~n~-l~~~~ 96 (362)
T 3goz_A 22 HGVTSLDLSLNN-LYSI-STVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPAN-VTSLNLSGNF-LSYKS 96 (362)
T ss_dssp TTCCEEECTTSC-GGGS-CHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTT-CCEEECCSSC-GGGSC
T ss_pred CCceEEEccCCC-CChH-HHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCC-ccEEECcCCc-CChHH
Confidence 358899999866 7766 32 1 122389999999986 554322 3333 77 9999999986 33211
Q ss_pred cceeecCCCCCccCCCCCCCC-CCccEEEeccCccccccc-cc----CcC-CCCccEEeecCCcCCcc-----cCCC--C
Q 023528 68 ERIWIFGCPNLESFPEGGLPS-TKLTRLTIWKCKNLKALP-NC----IHN-LTSLLHLEIRECRSLVS-----FPED--G 133 (281)
Q Consensus 68 ~~L~l~~~~~l~~l~~~~~~~-~~L~~L~l~~c~~l~~lp-~~----~~~-l~~L~~L~l~~~~~l~~-----l~~~--~ 133 (281)
. ..+......+ ++|++|++++|. ++..+ .. +.. .++|++|+++++ .++. ++.. .
T Consensus 97 ~----------~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~ 164 (362)
T 3goz_A 97 S----------DELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAA 164 (362)
T ss_dssp H----------HHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHT
T ss_pred H----------HHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhc
Confidence 0 0000001112 488899998865 34332 22 233 368899999885 3332 1111 2
Q ss_pred CCCCcCeEEecCCCCccccch----hhhccC-CCcceEEeecCCCCCcc-----CCC----CCCCccEEeccCCCCCccc
Q 023528 134 FPTNLQSLVVDDLKISKPLFE----WGLDRF-ACLRELRIRGGCPDLVS-----SPR----FPASLTQLGISDMPTLKCL 199 (281)
Q Consensus 134 ~~~~L~~L~l~~~~~~~~~~~----~~~~~l-~~L~~L~l~~~~~~~~~-----~~~----~~~~L~~L~l~~c~~l~~l 199 (281)
.+++|++|++++|.. +.... ..+... ++|++|++++ +.++. ++. .+++|++|++++ +.++..
T Consensus 165 ~~~~L~~L~Ls~n~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~--N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~ 240 (362)
T 3goz_A 165 IPANVNSLNLRGNNL-ASKNCAELAKFLASIPASVTSLDLSA--NLLGLKSYAELAYIFSSIPNHVVSLNLCL-NCLHGP 240 (362)
T ss_dssp SCTTCCEEECTTSCG-GGSCHHHHHHHHHTSCTTCCEEECTT--SCGGGSCHHHHHHHHHHSCTTCCEEECCS-SCCCCC
T ss_pred CCccccEeeecCCCC-chhhHHHHHHHHHhCCCCCCEEECCC--CCCChhHHHHHHHHHhcCCCCceEEECcC-CCCCcH
Confidence 235889999988643 32222 123445 5899999988 34554 222 356899999998 466554
Q ss_pred cc----cC-CCCCCcCEEeccCCCCcccc--------cC-CCCCCCCcEEecCCCc
Q 023528 200 SS----VG-ENLTSLETLDLSNCPKLKYF--------SK-QGLPKSLLRLGIDDCP 241 (281)
Q Consensus 200 ~~----~~-~~l~~L~~L~l~~c~~l~~i--------~~-~~~~~~L~~L~l~~c~ 241 (281)
+. .. ..+++|++|++++|. +..+ +. ....++|++|++++++
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHHHHHhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 32 22 677889999998863 2222 11 1225678888888775
No 116
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.10 E-value=7.2e-12 Score=115.12 Aligned_cols=59 Identities=14% Similarity=0.048 Sum_probs=39.3
Q ss_pred CccceeecccCCCCCcc--cCCCCCccCcCceeeccCCcCccc-----cccC-CCcCCcCcEEEecCCc
Q 023528 1 MKQDISRSSSGSTSRTP--FSSENELPATLEHLEVTHCSNLAF-----LSWN-GNLPRALKYLYVKDCS 61 (281)
Q Consensus 1 ~~~l~~l~~~~~~~l~~--~~~~~~~~~~L~~L~l~~~~~l~~-----l~~~-~~l~~~L~~L~l~~~~ 61 (281)
+++++.|++.+|..++. ++......++|++|++++|. +.. ++.+ ..+++ |++|++++|.
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~-L~~L~l~~~~ 195 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTS-LVSLNISCLA 195 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCC-CCEEECTTCC
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCc-CcEEEecccC
Confidence 36788999998866654 21111123699999999887 332 3332 35678 9999999885
No 117
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.07 E-value=4.6e-10 Score=84.34 Aligned_cols=124 Identities=17% Similarity=0.120 Sum_probs=82.6
Q ss_pred cCcCceeeccCCcCcc--cccc-CCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCcc
Q 023528 25 PATLEHLEVTHCSNLA--FLSW-NGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKN 101 (281)
Q Consensus 25 ~~~L~~L~l~~~~~l~--~l~~-~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~ 101 (281)
+++|+.|++++|. +. .+|. +..+++ |++|++++|. + ..+ ..+..+++|++|++++|..
T Consensus 16 ~~~l~~L~l~~n~-l~~~~~~~~~~~l~~-L~~L~l~~n~-l---------------~~~-~~~~~l~~L~~L~Ls~n~i 76 (149)
T 2je0_A 16 PSDVKELVLDNSR-SNEGKLEGLTDEFEE-LEFLSTINVG-L---------------TSI-ANLPKLNKLKKLELSDNRV 76 (149)
T ss_dssp GGGCSEEECTTCB-CBTTBCCSCCTTCTT-CCEEECTTSC-C---------------CCC-TTCCCCTTCCEEECCSSCC
T ss_pred CccCeEEEccCCc-CChhHHHHHHhhcCC-CcEEECcCCC-C---------------CCc-hhhhcCCCCCEEECCCCcc
Confidence 3588888988886 44 5655 577888 8888888764 1 122 3344567888888888654
Q ss_pred cccccccCcCCCCccEEeecCCcCCcccC---CCCCCCCcCeEEecCCCCccccch---hhhccCCCcceEEee
Q 023528 102 LKALPNCIHNLTSLLHLEIRECRSLVSFP---EDGFPTNLQSLVVDDLKISKPLFE---WGLDRFACLRELRIR 169 (281)
Q Consensus 102 l~~lp~~~~~l~~L~~L~l~~~~~l~~l~---~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~l~~L~~L~l~ 169 (281)
...+|..+..+++|++|+++++ .++.++ ....+++|++|++++| .++..+. ..+..+++|++|+++
T Consensus 77 ~~~~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 77 SGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CSCTHHHHHHCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred cchHHHHhhhCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 4436666667888888888875 344432 2356778888888875 3444433 356777778777664
No 118
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.05 E-value=8e-12 Score=111.32 Aligned_cols=33 Identities=30% Similarity=0.418 Sum_probs=16.3
Q ss_pred cCceeeccCCcCccc-----cc-cCCCcCCcCcEEEecCCc
Q 023528 27 TLEHLEVTHCSNLAF-----LS-WNGNLPRALKYLYVKDCS 61 (281)
Q Consensus 27 ~L~~L~l~~~~~l~~-----l~-~~~~l~~~L~~L~l~~~~ 61 (281)
+|++|++++|. +.. ++ .+..+++ |++|+++++.
T Consensus 86 ~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~-L~~L~Ls~n~ 124 (461)
T 1z7x_W 86 KIQKLSLQNCC-LTGAGCGVLSSTLRTLPT-LQELHLSDNL 124 (461)
T ss_dssp CCCEEECTTSC-CBGGGHHHHHHHTTSCTT-CCEEECCSSB
T ss_pred ceeEEEccCCC-CCHHHHHHHHHHHccCCc-eeEEECCCCc
Confidence 45555555554 321 11 1445555 6666665554
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.02 E-value=6.2e-10 Score=83.61 Aligned_cols=80 Identities=18% Similarity=0.184 Sum_probs=40.0
Q ss_pred CCccEEEeccCccc-ccccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcceEE
Q 023528 89 TKLTRLTIWKCKNL-KALPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELR 167 (281)
Q Consensus 89 ~~L~~L~l~~c~~l-~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 167 (281)
++|+.|++++|... +.+|..+..+++|++|+++++ .+..+.....+++|+.|++++|.....++. .+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSIANLPKLNKLKKLELSDNRVSGGLEV-LAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCCTTCCCCTTCCEEECCSSCCCSCTHH-HHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCchhhhcCCCCCEEECCCCcccchHHH-HhhhCCCCCEEE
Confidence 35666666665322 245555556666666666654 333333334455555555555332222322 334455555555
Q ss_pred eec
Q 023528 168 IRG 170 (281)
Q Consensus 168 l~~ 170 (281)
+++
T Consensus 95 ls~ 97 (149)
T 2je0_A 95 LSG 97 (149)
T ss_dssp CTT
T ss_pred CCC
Confidence 554
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.02 E-value=6e-11 Score=108.50 Aligned_cols=173 Identities=17% Similarity=0.123 Sum_probs=117.8
Q ss_pred CcCceeeccCCcCcccccc-CCCcCCcCcEEEecCCcchh-------------ccccc---------ee-ecCC------
Q 023528 26 ATLEHLEVTHCSNLAFLSW-NGNLPRALKYLYVKDCSKLE-------------SLAER---------IW-IFGC------ 75 (281)
Q Consensus 26 ~~L~~L~l~~~~~l~~l~~-~~~l~~~L~~L~l~~~~~l~-------------~~p~~---------L~-l~~~------ 75 (281)
+.|+.|+++++. ++.+|. ++.+++ |++|+++++..+. ..|.. ++ ++.+
T Consensus 349 ~~L~~L~Ls~n~-L~~Lp~~i~~l~~-L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~ 426 (567)
T 1dce_A 349 EQLFRCELSVEK-STVLQSELESCKE-LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 426 (567)
T ss_dssp TTSSSCCCCHHH-HHHHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred ccceeccCChhh-HHhhHHHHHHHHH-HHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhh
Confidence 688888888766 667765 677778 8888876543111 11111 22 0000
Q ss_pred ------CCCccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC-CCCCCcCeEEecCCCC
Q 023528 76 ------PNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLKI 148 (281)
Q Consensus 76 ------~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~ 148 (281)
..+..++ ...|+.|++++| .++.+|. +..+++|+.|+++++ .++.+|.. +.+++|+.|++++| .
T Consensus 427 ~l~l~~n~i~~l~-----~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~ 497 (567)
T 1dce_A 427 SKFLLENSVLKME-----YADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-A 497 (567)
T ss_dssp HHHHHHHHHHHHH-----HTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-C
T ss_pred hhhhhcccccccC-----ccCceEEEecCC-CCCCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCC-C
Confidence 0111111 236889999995 6667875 889999999999984 56677654 67889999999984 5
Q ss_pred ccccchhhhccCCCcceEEeecCCCCCccC--CC---CCCCccEEeccCCCCCccccccC----CCCCCcCEEec
Q 023528 149 SKPLFEWGLDRFACLRELRIRGGCPDLVSS--PR---FPASLTQLGISDMPTLKCLSSVG----ENLTSLETLDL 214 (281)
Q Consensus 149 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~---~~~~L~~L~l~~c~~l~~l~~~~----~~l~~L~~L~l 214 (281)
++.+| .+..+++|+.|++++ +.+..+ |. ..++|+.|++++ +.+..+|... ..+++|+.|++
T Consensus 498 l~~lp--~l~~l~~L~~L~Ls~--N~l~~~~~p~~l~~l~~L~~L~L~~-N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 498 LENVD--GVANLPRLQELLLCN--NRLQQSAAIQPLVSCPRLVLLNLQG-NSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCCG--GGTTCSSCCEEECCS--SCCCSSSTTGGGGGCTTCCEEECTT-SGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCc--ccCCCCCCcEEECCC--CCCCCCCCcHHHhcCCCCCEEEecC-CcCCCCccHHHHHHHHCcccCccCC
Confidence 55566 688999999999998 566666 44 567899999999 5677766433 34788888753
No 121
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.99 E-value=2.7e-09 Score=82.54 Aligned_cols=61 Identities=20% Similarity=0.132 Sum_probs=36.1
Q ss_pred CccEEeccCCCCCccccc--cCCCCCCcCEEeccCCCCcccccCC-----CCCCCCcEEecCCCchHHHH
Q 023528 184 SLTQLGISDMPTLKCLSS--VGENLTSLETLDLSNCPKLKYFSKQ-----GLPKSLLRLGIDDCPLMEKR 246 (281)
Q Consensus 184 ~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~i~~~-----~~~~~L~~L~l~~c~~l~~~ 246 (281)
+|+.|++++ +.++.+|. .+..+++|++|++++| .+..++.. +.+++|++|++.++..-+..
T Consensus 89 ~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~~ 156 (176)
T 1a9n_A 89 DLTELILTN-NSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQ 156 (176)
T ss_dssp TCCEEECCS-CCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCHHHHH
T ss_pred CCCEEECCC-CcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCHHHHH
Confidence 444444444 35555553 2366777888888774 45555542 22577888888777754443
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.98 E-value=8.3e-10 Score=85.43 Aligned_cols=124 Identities=13% Similarity=0.127 Sum_probs=91.8
Q ss_pred cCcCceeeccCCcCccccccCCCcC-CcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCcccc
Q 023528 25 PATLEHLEVTHCSNLAFLSWNGNLP-RALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLK 103 (281)
Q Consensus 25 ~~~L~~L~l~~~~~l~~l~~~~~l~-~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~ 103 (281)
+++|++|++++|. +..++.+..+. + |++|+++++. +. .+ ..+..+++|++|++++| .+.
T Consensus 18 ~~~L~~L~l~~n~-l~~i~~~~~~~~~-L~~L~Ls~N~-l~---------------~~-~~l~~l~~L~~L~Ls~N-~l~ 77 (176)
T 1a9n_A 18 AVRDRELDLRGYK-IPVIENLGATLDQ-FDAIDFSDNE-IR---------------KL-DGFPLLRRLKTLLVNNN-RIC 77 (176)
T ss_dssp TTSCEEEECTTSC-CCSCCCGGGGTTC-CSEEECCSSC-CC---------------EE-CCCCCCSSCCEEECCSS-CCC
T ss_pred cCCceEEEeeCCC-CchhHHhhhcCCC-CCEEECCCCC-CC---------------cc-cccccCCCCCEEECCCC-ccc
Confidence 3689999999886 77777766666 6 9999998864 22 22 23345679999999996 566
Q ss_pred cccccC-cCCCCccEEeecCCcCCcccCC---CCCCCCcCeEEecCCCCccccchh---hhccCCCcceEEeec
Q 023528 104 ALPNCI-HNLTSLLHLEIRECRSLVSFPE---DGFPTNLQSLVVDDLKISKPLFEW---GLDRFACLRELRIRG 170 (281)
Q Consensus 104 ~lp~~~-~~l~~L~~L~l~~~~~l~~l~~---~~~~~~L~~L~l~~~~~~~~~~~~---~~~~l~~L~~L~l~~ 170 (281)
.+|..+ ..+++|++|+++++ .++.++. ...+++|+.|++++|. +...+.. .+..+++|+.|+++.
T Consensus 78 ~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 78 RIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp EECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred ccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCc
Confidence 676554 78999999999985 5566664 3567899999999864 4444432 477899999999987
No 123
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.98 E-value=2.6e-10 Score=104.65 Aligned_cols=148 Identities=19% Similarity=0.074 Sum_probs=86.6
Q ss_pred CCCCccEEEeccCccccc----ccccCcCCCCccEEeecCCcCC----cccCCC-CCCCCcCeEEecCCCCccccchhhh
Q 023528 87 PSTKLTRLTIWKCKNLKA----LPNCIHNLTSLLHLEIRECRSL----VSFPED-GFPTNLQSLVVDDLKISKPLFEWGL 157 (281)
Q Consensus 87 ~~~~L~~L~l~~c~~l~~----lp~~~~~l~~L~~L~l~~~~~l----~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~ 157 (281)
.+++|++|++++|..... ++.....+++|++|+++++..- ..++.. ..+++|++|++.+|. +..++ ..+
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~-~~~ 239 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELV-GFF 239 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGH-HHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHH-HHH
Confidence 367888888888753211 2233456788888888764221 122211 346788889888854 33344 357
Q ss_pred ccCCCcceEEeecCCCCCcc---CCC---CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCCCcccccC---CCC
Q 023528 158 DRFACLRELRIRGGCPDLVS---SPR---FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCPKLKYFSK---QGL 228 (281)
Q Consensus 158 ~~l~~L~~L~l~~~~~~~~~---~~~---~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~---~~~ 228 (281)
..+++|++|+++. +..... ... .+++|+.|+++++ ....+|.....+++|++|++++|. +..... ...
T Consensus 240 ~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~ 316 (592)
T 3ogk_B 240 KAAANLEEFCGGS-LNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQK 316 (592)
T ss_dssp HHCTTCCEEEECB-CCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTT
T ss_pred hhhhHHHhhcccc-cccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHh
Confidence 7788888888875 322211 111 4557777777773 445555333667778888887765 332111 123
Q ss_pred CCCCcEEecCC
Q 023528 229 PKSLLRLGIDD 239 (281)
Q Consensus 229 ~~~L~~L~l~~ 239 (281)
+++|++|++.+
T Consensus 317 ~~~L~~L~L~~ 327 (592)
T 3ogk_B 317 CPNLEVLETRN 327 (592)
T ss_dssp CTTCCEEEEEG
T ss_pred CcCCCEEeccC
Confidence 56677776663
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.95 E-value=1e-08 Score=80.57 Aligned_cols=88 Identities=18% Similarity=0.269 Sum_probs=45.8
Q ss_pred CccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchh
Q 023528 78 LESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEW 155 (281)
Q Consensus 78 l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~ 155 (281)
+..+|.... ++|++|+++++ .++.+|..+..+++|++|+++++ .++.++.. ..+++|++|++++| .++.++..
T Consensus 22 l~~ip~~~~--~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~ 96 (193)
T 2wfh_A 22 LKVLPKGIP--RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN-RLRCIPPR 96 (193)
T ss_dssp CSSCCSCCC--TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTT
T ss_pred CCcCCCCCC--CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC-ccCEeCHH
Confidence 445554332 36677777663 44556666666666666666663 44444332 34455555555552 33333333
Q ss_pred hhccCCCcceEEeec
Q 023528 156 GLDRFACLRELRIRG 170 (281)
Q Consensus 156 ~~~~l~~L~~L~l~~ 170 (281)
.+..+++|++|++++
T Consensus 97 ~f~~l~~L~~L~L~~ 111 (193)
T 2wfh_A 97 TFDGLKSLRLLSLHG 111 (193)
T ss_dssp TTTTCTTCCEEECCS
T ss_pred HhCCCCCCCEEECCC
Confidence 344455555555544
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.95 E-value=1.6e-08 Score=78.04 Aligned_cols=119 Identities=25% Similarity=0.261 Sum_probs=71.4
Q ss_pred ccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceEEe
Q 023528 91 LTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRI 168 (281)
Q Consensus 91 L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 168 (281)
.+.+++++ ..+..+|..+ .++|++|+++++ .++.++.. ..+++|++|++++| .++.++...+..+++|++|++
T Consensus 9 ~~~l~~~~-~~l~~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNS-KGLTSVPTGI--PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCS-SCCSSCCTTC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecC-CCCccCCCCC--CCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEEC
Confidence 45677766 4566666443 367788888774 45555542 45677777777774 445555445666777777777
Q ss_pred ecCCCCCccCCC----CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCC
Q 023528 169 RGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNC 217 (281)
Q Consensus 169 ~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c 217 (281)
++ +.++.++. ..++|+.|++++ +.++.+|... ..+++|++|+++++
T Consensus 84 ~~--N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 84 HE--NKLQSLPNGVFDKLTQLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CS--SCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CC--CCccccCHHHhhCCcccCEEECcC-CcceEeCHHHhcCCcccCEEEecCC
Confidence 76 34444443 235666666666 4555665443 55666666666664
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.93 E-value=1.1e-08 Score=80.17 Aligned_cols=78 Identities=17% Similarity=0.157 Sum_probs=35.7
Q ss_pred CccEEEeccCccccccccc--CcCCCCccEEeecCCcCCcccCC--CCCCCCcCeEEecCCCCccccchhhhccCCCcce
Q 023528 90 KLTRLTIWKCKNLKALPNC--IHNLTSLLHLEIRECRSLVSFPE--DGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRE 165 (281)
Q Consensus 90 ~L~~L~l~~c~~l~~lp~~--~~~l~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 165 (281)
+|++|+++++ .+..++.. +..+++|++|+++++ .++.++. ...+++|+.|++++| .++.++...+..+++|++
T Consensus 30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 106 (192)
T 1w8a_A 30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKT 106 (192)
T ss_dssp TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCE
T ss_pred CCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCE
Confidence 5666666663 33444321 455566666666553 3333321 133455555555552 232332223444444444
Q ss_pred EEeec
Q 023528 166 LRIRG 170 (281)
Q Consensus 166 L~l~~ 170 (281)
|++++
T Consensus 107 L~L~~ 111 (192)
T 1w8a_A 107 LNLYD 111 (192)
T ss_dssp EECCS
T ss_pred EECCC
Confidence 44444
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.93 E-value=2.1e-08 Score=77.48 Aligned_cols=100 Identities=26% Similarity=0.334 Sum_probs=55.8
Q ss_pred CCccEEEeccCcccccccc-cCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcce
Q 023528 89 TKLTRLTIWKCKNLKALPN-CIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRE 165 (281)
Q Consensus 89 ~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 165 (281)
++|++|+++++. +..+|. .+..+++|++|+++++ .++.++.. ..+++|+.|++++| .++.++...+..+++|++
T Consensus 28 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~ 104 (177)
T 2o6r_A 28 SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKE 104 (177)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCE
Confidence 366666666643 344442 3456666666666663 44444432 34566666666663 344444434556666666
Q ss_pred EEeecCCCCCccCCC----CCCCccEEeccCC
Q 023528 166 LRIRGGCPDLVSSPR----FPASLTQLGISDM 193 (281)
Q Consensus 166 L~l~~~~~~~~~~~~----~~~~L~~L~l~~c 193 (281)
|++++ +.++.++. ..++|+.|+++++
T Consensus 105 L~l~~--N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 105 LALDT--NQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp EECCS--SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EECcC--CcceEeCHHHhcCCcccCEEEecCC
Confidence 66666 34444443 2456666666663
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.92 E-value=2.5e-08 Score=78.29 Aligned_cols=118 Identities=18% Similarity=0.183 Sum_probs=62.9
Q ss_pred cEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC-CCCCCcCeEEecCCCCccccchhhhccCCCcceEEeec
Q 023528 92 TRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRG 170 (281)
Q Consensus 92 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 170 (281)
+.+++++ ..+..+|..+ .+.+++|+++++ .+..+|.. ..+++|+.|++++| .++.++...|..+++|++|++++
T Consensus 13 ~~l~~~~-~~l~~ip~~~--~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSN-KGLKVLPKGI--PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTT-SCCSSCCSCC--CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCC-CCCCcCCCCC--CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCC
Confidence 4566666 3456666544 246677777663 44455422 34566666666663 34444444456666666666665
Q ss_pred CCCCCccCCC----CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCC
Q 023528 171 GCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNC 217 (281)
Q Consensus 171 ~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c 217 (281)
+.+..++. ..++|+.|++++ +.++.+|... ..+++|++|+++++
T Consensus 88 --N~l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 88 --NRLRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp --SCCCBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred --CccCEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCC
Confidence 33444432 234555666655 4555555332 45555555555553
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.90 E-value=1.9e-08 Score=85.61 Aligned_cols=95 Identities=11% Similarity=0.081 Sum_probs=55.0
Q ss_pred CCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC----CCCCcc-EEeccCCCCCccccccC-CCCCC
Q 023528 135 PTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR----FPASLT-QLGISDMPTLKCLSSVG-ENLTS 208 (281)
Q Consensus 135 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~-~L~l~~c~~l~~l~~~~-~~l~~ 208 (281)
+++|+.+++.+ +.++.++...|.++++|+.+++.. . ++.++. ...+|+ .+.+.+ .++.++... .++++
T Consensus 225 ~~~L~~l~L~~-n~i~~I~~~aF~~~~~L~~l~l~~-n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~ 298 (329)
T 3sb4_A 225 MPNLVSLDISK-TNATTIPDFTFAQKKYLLKIKLPH-N--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDN 298 (329)
T ss_dssp CTTCCEEECTT-BCCCEECTTTTTTCTTCCEEECCT-T--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTT
T ss_pred cCCCeEEECCC-CCcceecHhhhhCCCCCCEEECCc-c--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCcc
Confidence 45666666665 335555555666666777776665 2 444443 344566 666665 466665444 66666
Q ss_pred cCEEeccCCCCcccccCCCC--CCCCcEEe
Q 023528 209 LETLDLSNCPKLKYFSKQGL--PKSLLRLG 236 (281)
Q Consensus 209 L~~L~l~~c~~l~~i~~~~~--~~~L~~L~ 236 (281)
|+++++.+ +.+..++...+ +++|+.++
T Consensus 299 L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 299 LRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred CCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 77776655 45566655433 44555554
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.87 E-value=5e-08 Score=76.48 Aligned_cols=35 Identities=17% Similarity=0.315 Sum_probs=16.1
Q ss_pred CCCCccEEEeccCccccccc-ccCcCCCCccEEeecC
Q 023528 87 PSTKLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRE 122 (281)
Q Consensus 87 ~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~ 122 (281)
.+++|++|+++++. ++.++ ..+..+++|++|++++
T Consensus 76 ~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~ 111 (192)
T 1w8a_A 76 GASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYD 111 (192)
T ss_dssp TCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCS
T ss_pred CcccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCC
Confidence 34455555555532 22222 2344555555555554
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.87 E-value=1.4e-08 Score=86.52 Aligned_cols=96 Identities=11% Similarity=0.067 Sum_probs=76.7
Q ss_pred CCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcc-eEEeecCCCCCccCCC----CCCC
Q 023528 112 LTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLR-ELRIRGGCPDLVSSPR----FPAS 184 (281)
Q Consensus 112 l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~----~~~~ 184 (281)
+++|+.+++.+ ..++.++.. ..+++|+.+.+.++ ++.++...|.++++|+ .+.+.. .++.++. ...+
T Consensus 225 ~~~L~~l~L~~-n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~---~l~~I~~~aF~~c~~ 298 (329)
T 3sb4_A 225 MPNLVSLDISK-TNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA---SVTAIEFGAFMGCDN 298 (329)
T ss_dssp CTTCCEEECTT-BCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT---TCCEECTTTTTTCTT
T ss_pred cCCCeEEECCC-CCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc---cceEEchhhhhCCcc
Confidence 78899999987 357788765 45789999999874 7778877899999999 999986 4455543 5678
Q ss_pred ccEEeccCCCCCccccccC-CCCCCcCEEec
Q 023528 185 LTQLGISDMPTLKCLSSVG-ENLTSLETLDL 214 (281)
Q Consensus 185 L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l 214 (281)
|+.+++.+ +.++.++... .++++|+.++.
T Consensus 299 L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 299 LRYVLATG-DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred CCEEEeCC-CccCccchhhhcCCcchhhhcc
Confidence 99999988 7899998655 88889998875
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.78 E-value=1.8e-08 Score=92.20 Aligned_cols=117 Identities=18% Similarity=0.121 Sum_probs=83.7
Q ss_pred CcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCC
Q 023528 52 LKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPE 131 (281)
Q Consensus 52 L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~ 131 (281)
|+.|+++++. +..+|. +..+++|+.|++++| .+..+|..++.+++|+.|+++++ .++.+|.
T Consensus 443 L~~L~Ls~n~----------------l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~ 503 (567)
T 1dce_A 443 VRVLHLAHKD----------------LTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENVDG 503 (567)
T ss_dssp CSEEECTTSC----------------CSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCGG
T ss_pred ceEEEecCCC----------------CCCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCC-CCCCCcc
Confidence 7777777643 334444 555778999999985 56688888888999999999884 5666775
Q ss_pred CCCCCCcCeEEecCCCCccccc-hhhhccCCCcceEEeecCCCCCccCCC-------CCCCccEEec
Q 023528 132 DGFPTNLQSLVVDDLKISKPLF-EWGLDRFACLRELRIRGGCPDLVSSPR-------FPASLTQLGI 190 (281)
Q Consensus 132 ~~~~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~-------~~~~L~~L~l 190 (281)
.+.+++|+.|++++| .++.+. ...+..+++|+.|++++ +.+..++. ..++|+.|++
T Consensus 504 l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~--N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 504 VANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQG--NSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTT--SGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecC--CcCCCCccHHHHHHHHCcccCccCC
Confidence 577889999999885 444442 33688899999999988 45555543 2457777753
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.77 E-value=6.9e-07 Score=78.15 Aligned_cols=118 Identities=8% Similarity=0.144 Sum_probs=57.5
Q ss_pred CCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCC----ccccchhhhccCCCcceEEeecCCCCCccCCC----CC
Q 023528 113 TSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKI----SKPLFEWGLDRFACLRELRIRGGCPDLVSSPR----FP 182 (281)
Q Consensus 113 ~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~----~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~ 182 (281)
.+|+.+.+.+ .++.++.. ..+++|+.+.+.++.. ...++...|.++++|+.+.+.. .++.++. ..
T Consensus 248 ~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~---~i~~I~~~aF~~c 322 (401)
T 4fdw_A 248 SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE---SIRILGQGLLGGN 322 (401)
T ss_dssp CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT---TCCEECTTTTTTC
T ss_pred CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC---ceEEEhhhhhcCC
Confidence 4455555532 23334332 2345556555554221 1124444455566666655553 2333332 33
Q ss_pred CCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCCC---CCCCCcEEecCC
Q 023528 183 ASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQG---LPKSLLRLGIDD 239 (281)
Q Consensus 183 ~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~~---~~~~L~~L~l~~ 239 (281)
.+|+.+.+.. .++.++... .++ +|+.+.+.++ ....++... ++..++.|++..
T Consensus 323 ~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 323 RKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp CSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECG
T ss_pred CCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCH
Confidence 5666666643 355555444 555 6777777663 344444322 234566666654
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.74 E-value=1.4e-08 Score=95.54 Aligned_cols=149 Identities=15% Similarity=0.090 Sum_probs=78.5
Q ss_pred cCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC-CCCCCcCeEEecCCCCccccchhhhc
Q 023528 80 SFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLKISKPLFEWGLD 158 (281)
Q Consensus 80 ~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~ 158 (281)
..+..+..+++|+.|++++|. +..+|..+..+++|++|+++++ .+..+|.. ..+++|+.|++++|. ++.+|. .+.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~-~~~ 290 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNR-LTSLPA-ELG 290 (727)
T ss_dssp -------CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSC-CSSCCS-SGG
T ss_pred cChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCc-CCccCh-hhc
Confidence 334455556788888888854 4567777777888888888774 45566643 566777778877744 445554 467
Q ss_pred cCCCcceEEeecCCCCCccCCC---CCCCccEEeccCCCCCc-cccccCCCCC-CcCEEeccCCCCcccccCCCCCCCCc
Q 023528 159 RFACLRELRIRGGCPDLVSSPR---FPASLTQLGISDMPTLK-CLSSVGENLT-SLETLDLSNCPKLKYFSKQGLPKSLL 233 (281)
Q Consensus 159 ~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~-~l~~~~~~l~-~L~~L~l~~c~~l~~i~~~~~~~~L~ 233 (281)
.+++|++|++++ +.++.+|. ..++|+.|+++++ .+. .+|..+.... ....++++++..... .+..|+
T Consensus 291 ~l~~L~~L~L~~--N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~-----~p~~l~ 362 (727)
T 4b8c_D 291 SCFQLKYFYFFD--NMVTTLPWEFGNLCNLQFLGVEGN-PLEKQFLKILTEKSVTGLIFYLRDNRPEIP-----LPHERR 362 (727)
T ss_dssp GGTTCSEEECCS--SCCCCCCSSTTSCTTCCCEECTTS-CCCSHHHHHHHHHHHHHHHHHHHHCCCCCC-----CCCC--
T ss_pred CCCCCCEEECCC--CCCCccChhhhcCCCccEEeCCCC-ccCCCChHHHhhcchhhhHHhhccCcccCc-----Cccccc
Confidence 777777777776 35556654 3456777777773 444 3332221111 111244555322211 345667
Q ss_pred EEecCCC
Q 023528 234 RLGIDDC 240 (281)
Q Consensus 234 ~L~l~~c 240 (281)
.|++..+
T Consensus 363 ~l~l~~n 369 (727)
T 4b8c_D 363 FIEINTD 369 (727)
T ss_dssp -------
T ss_pred eeEeecc
Confidence 7766655
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.65 E-value=5.7e-08 Score=91.46 Aligned_cols=109 Identities=17% Similarity=0.095 Sum_probs=70.4
Q ss_pred cccccCcCCCCccEEeecCCcCCcccCCC-CCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC--
Q 023528 104 ALPNCIHNLTSLLHLEIRECRSLVSFPED-GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR-- 180 (281)
Q Consensus 104 ~lp~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-- 180 (281)
..|..+..++.|+.|+++++ .+..++.. ..+++|++|++++| .++.+|. .+..+++|++|++++ +.+..+|.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~-~~~~l~~L~~L~Ls~--N~l~~lp~~~ 289 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGN-SLTELPA-EIKNLSNLRVLDLSH--NRLTSLPAEL 289 (727)
T ss_dssp -------CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTS-CCSCCCG-GGGGGTTCCEEECTT--SCCSSCCSSG
T ss_pred cChhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCC-cCcccCh-hhhCCCCCCEEeCcC--CcCCccChhh
Confidence 33556677788888888774 34455543 45677888888874 3446653 567778888888887 44556665
Q ss_pred -CCCCccEEeccCCCCCccccccCCCCCCcCEEeccCCC
Q 023528 181 -FPASLTQLGISDMPTLKCLSSVGENLTSLETLDLSNCP 218 (281)
Q Consensus 181 -~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 218 (281)
..++|++|++++ +.++.+|..++.+++|++|++++|.
T Consensus 290 ~~l~~L~~L~L~~-N~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 290 GSCFQLKYFYFFD-NMVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp GGGTTCSEEECCS-SCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred cCCCCCCEEECCC-CCCCccChhhhcCCCccEEeCCCCc
Confidence 345778888877 4677777555777788888887754
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.63 E-value=5e-06 Score=72.67 Aligned_cols=203 Identities=10% Similarity=0.100 Sum_probs=141.7
Q ss_pred ceeecccCCCCCcccCCCCCcc-CcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccceeecCCCCCcc
Q 023528 4 DISRSSSGSTSRTPFSSENELP-ATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLES 80 (281)
Q Consensus 4 l~~l~~~~~~~l~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~ 80 (281)
++++.+. .+++.+ +..+|. .+|+.+.+.. .+..++. |..+++ |+.+++.++ .+..
T Consensus 137 L~~i~l~--~~i~~I-~~~aF~~~~L~~i~lp~--~l~~I~~~aF~~c~~-L~~l~l~~n----------------~l~~ 194 (401)
T 4fdw_A 137 IAKVVLN--EGLKSI-GDMAFFNSTVQEIVFPS--TLEQLKEDIFYYCYN-LKKADLSKT----------------KITK 194 (401)
T ss_dssp CSEEECC--TTCCEE-CTTTTTTCCCCEEECCT--TCCEECSSTTTTCTT-CCEEECTTS----------------CCSE
T ss_pred ccEEEeC--CCccEE-CHHhcCCCCceEEEeCC--CccEehHHHhhCccc-CCeeecCCC----------------cceE
Confidence 4445544 346666 444444 5788888875 4666654 677788 999888753 2344
Q ss_pred CCCCCCCCCCccEEEeccCccccccc-ccCcCCCCccEEeecCCcCCcccCCCCC-CCCcCeEEecCCCCccccchhhhc
Q 023528 81 FPEGGLPSTKLTRLTIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVSFPEDGF-PTNLQSLVVDDLKISKPLFEWGLD 158 (281)
Q Consensus 81 l~~~~~~~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~ 158 (281)
++.....+.+|+.+.+.. .+..++ ..+..+++|+.+.+.. .++.++...+ -++|+.+.+. +.++.+....|.
T Consensus 195 I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~~~L~~i~lp--~~i~~I~~~aF~ 268 (401)
T 4fdw_A 195 LPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRESGITTVKLP--NGVTNIASRAFY 268 (401)
T ss_dssp ECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTTCCCSEEEEE--TTCCEECTTTTT
T ss_pred echhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCC--CccCccccccccCCccEEEeC--CCccEEChhHhh
Confidence 444444467899999875 356665 5678899999999975 4666665422 2789999995 456777777899
Q ss_pred cCCCcceEEeecCCCC----CccCCC----CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCCCC-
Q 023528 159 RFACLRELRIRGGCPD----LVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQGL- 228 (281)
Q Consensus 159 ~l~~L~~L~l~~~~~~----~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~~~- 228 (281)
++++|+.+.+.+ ... ...++. ...+|+.+.+.+ .++.++... .++++|+.+.+.. .+..+...++
T Consensus 269 ~c~~L~~l~l~~-~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~ 343 (401)
T 4fdw_A 269 YCPELAEVTTYG-STFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFN 343 (401)
T ss_dssp TCTTCCEEEEES-SCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT--TCCEECTTSSS
T ss_pred CCCCCCEEEeCC-ccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc--cccEEcHHhCC
Confidence 999999999987 221 113433 566899999984 588888665 8889999999964 4777766444
Q ss_pred -CCCCcEEecCCC
Q 023528 229 -PKSLLRLGIDDC 240 (281)
Q Consensus 229 -~~~L~~L~l~~c 240 (281)
+ +|+.+++.+.
T Consensus 344 ~~-~L~~l~l~~n 355 (401)
T 4fdw_A 344 NT-GIKEVKVEGT 355 (401)
T ss_dssp SS-CCCEEEECCS
T ss_pred CC-CCCEEEEcCC
Confidence 5 8999988765
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.57 E-value=5.3e-07 Score=69.14 Aligned_cols=75 Identities=20% Similarity=0.165 Sum_probs=37.3
Q ss_pred ccEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceEEe
Q 023528 91 LTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRI 168 (281)
Q Consensus 91 L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 168 (281)
.+.+++++ ..+..+|..+ .+++++|+++++ .+..++.. ..+++|+.|++++| .++.++...+..+++|++|++
T Consensus 11 ~~~l~~s~-n~l~~ip~~~--~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCSG-KSLASVPTGI--PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TTEEECTT-SCCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEeCC-CCcCccCccC--CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEEC
Confidence 45666666 3455565544 256666666652 44444322 34455555555552 333444333444555555555
Q ss_pred ec
Q 023528 169 RG 170 (281)
Q Consensus 169 ~~ 170 (281)
++
T Consensus 86 ~~ 87 (170)
T 3g39_A 86 ND 87 (170)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.55 E-value=6.6e-07 Score=68.90 Aligned_cols=98 Identities=24% Similarity=0.267 Sum_probs=46.0
Q ss_pred cEEEeccCcccccccccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceEEee
Q 023528 92 TRLTIWKCKNLKALPNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIR 169 (281)
Q Consensus 92 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 169 (281)
+.+++++ ..++.+|..+. ++|++|+++++ .+..++.. ..+++|+.|++++| .++.++...+..++
T Consensus 15 ~~l~~~~-n~l~~iP~~~~--~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~-------- 81 (174)
T 2r9u_A 15 TLVNCQN-IRLASVPAGIP--TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLT-------- 81 (174)
T ss_dssp SEEECCS-SCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCT--------
T ss_pred cEEEeCC-CCCCccCCCcC--CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcc--------
Confidence 4555555 34455554442 55555555552 33333221 23444444444442 33333332333444
Q ss_pred cCCCCCccCCCCCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCC
Q 023528 170 GGCPDLVSSPRFPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNC 217 (281)
Q Consensus 170 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c 217 (281)
+|+.|++++ +.++.+|... ..+++|++|+++++
T Consensus 82 --------------~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 82 --------------QLTQLDLND-NHLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp --------------TCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred --------------hhhEEECCC-CccceeCHHHhccccCCCEEEeCCC
Confidence 445555554 4555555432 55666666666663
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.52 E-value=5.1e-10 Score=88.35 Aligned_cols=107 Identities=19% Similarity=0.108 Sum_probs=45.2
Q ss_pred ccccCcCCCCccEEeecCCcCCcccCCCCCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC--CC
Q 023528 105 LPNCIHNLTSLLHLEIRECRSLVSFPEDGFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR--FP 182 (281)
Q Consensus 105 lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~ 182 (281)
+|..+..+++|++|+++++ .+..++....+++|+.|++++| .++.++. .+..+++|++|++++ +.+..++. ..
T Consensus 40 l~~~~~~l~~L~~L~ls~n-~l~~l~~~~~l~~L~~L~l~~n-~l~~l~~-~~~~~~~L~~L~L~~--N~l~~l~~~~~l 114 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTN-NIEKISSLSGMENLRILSLGRN-LIKKIEN-LDAVADTLEELWISY--NQIASLSGIEKL 114 (198)
T ss_dssp CHHHHHHTTTCSEEECSEE-EESCCCCHHHHTTCCEEEEEEE-EECSCSS-HHHHHHHCSEEEEEE--EECCCHHHHHHH
T ss_pred hhHHHhcCCCCCEEECCCC-CCccccccccCCCCCEEECCCC-Ccccccc-hhhcCCcCCEEECcC--CcCCcCCccccC
Confidence 3334444445555555442 2333332223344444444442 2223321 233334455555554 22322222 22
Q ss_pred CCccEEeccCCCCCccccc--cCCCCCCcCEEeccCC
Q 023528 183 ASLTQLGISDMPTLKCLSS--VGENLTSLETLDLSNC 217 (281)
Q Consensus 183 ~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~l~~c 217 (281)
++|+.|++++ +.++.++. .+..+++|++|++++|
T Consensus 115 ~~L~~L~l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 115 VNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp HHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred CCCCEEECCC-CcCCchhHHHHHhcCCCCCEEEecCC
Confidence 3445555554 34444432 1255666666666664
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.48 E-value=1.4e-06 Score=66.78 Aligned_cols=78 Identities=21% Similarity=0.317 Sum_probs=37.8
Q ss_pred CccEEEeccCcccccc-cccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceE
Q 023528 90 KLTRLTIWKCKNLKAL-PNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLREL 166 (281)
Q Consensus 90 ~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 166 (281)
+|++|+++++ .+..+ |..+..+++|++|+++++ .+..++.. ..+++|+.|++++| .++.++...+..+++|++|
T Consensus 31 ~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 107 (170)
T 3g39_A 31 TTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHI 107 (170)
T ss_dssp TCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCcEEEcCCC-cCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEE
Confidence 5555555553 23333 334455555555555552 34444432 23455555555552 3334443345555566666
Q ss_pred Eeec
Q 023528 167 RIRG 170 (281)
Q Consensus 167 ~l~~ 170 (281)
++++
T Consensus 108 ~L~~ 111 (170)
T 3g39_A 108 WLLN 111 (170)
T ss_dssp ECCS
T ss_pred EeCC
Confidence 6655
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.45 E-value=1.5e-06 Score=66.92 Aligned_cols=78 Identities=21% Similarity=0.296 Sum_probs=38.0
Q ss_pred CccEEEeccCcccccc-cccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceE
Q 023528 90 KLTRLTIWKCKNLKAL-PNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLREL 166 (281)
Q Consensus 90 ~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 166 (281)
+|++|+++++. +..+ |..+..+++|++|++++ ..+..++.. ..+++|+.|++++ +.++.++...+..+++|++|
T Consensus 34 ~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L 110 (174)
T 2r9u_A 34 DKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNS-NKLTAIPTGVFDKLTQLTQLDLND-NHLKSIPRGAFDNLKSLTHI 110 (174)
T ss_dssp TCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCSEE
T ss_pred CCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCC-CCCCccChhHhCCcchhhEEECCC-CccceeCHHHhccccCCCEE
Confidence 55555555532 2223 33445555555555555 244444432 3345555555555 23334443335555566666
Q ss_pred Eeec
Q 023528 167 RIRG 170 (281)
Q Consensus 167 ~l~~ 170 (281)
++++
T Consensus 111 ~L~~ 114 (174)
T 2r9u_A 111 YLYN 114 (174)
T ss_dssp ECCS
T ss_pred EeCC
Confidence 6555
No 142
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.40 E-value=3.4e-07 Score=70.18 Aligned_cols=87 Identities=9% Similarity=0.084 Sum_probs=57.8
Q ss_pred CCccEEEeccCcccccc-cccCcCCCCccEEeecCCcCCcccCCC--CC----CCCcCeEEecCCCCccccchhhhccCC
Q 023528 89 TKLTRLTIWKCKNLKAL-PNCIHNLTSLLHLEIRECRSLVSFPED--GF----PTNLQSLVVDDLKISKPLFEWGLDRFA 161 (281)
Q Consensus 89 ~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~--~~----~~~L~~L~l~~~~~~~~~~~~~~~~l~ 161 (281)
.+|+.|++++|. ++.. -..+..+++|++|++++|..++..... .. .++|++|++++|..+++.....+.+++
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 378888888876 4322 134567888888888888666532211 11 246888888888877665555567777
Q ss_pred CcceEEeecCCCCCcc
Q 023528 162 CLRELRIRGGCPDLVS 177 (281)
Q Consensus 162 ~L~~L~l~~~~~~~~~ 177 (281)
+|++|++++ |..+++
T Consensus 140 ~L~~L~L~~-c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSD-LPGVKE 154 (176)
T ss_dssp TCCEEEEES-CTTCCC
T ss_pred CCCEEECCC-CCCCCc
Confidence 888888887 766654
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.38 E-value=6e-09 Score=82.13 Aligned_cols=10 Identities=40% Similarity=0.684 Sum_probs=6.0
Q ss_pred CCCCCcCEEe
Q 023528 204 ENLTSLETLD 213 (281)
Q Consensus 204 ~~l~~L~~L~ 213 (281)
..+++|++|+
T Consensus 171 ~~l~~L~~Ld 180 (198)
T 1ds9_A 171 KRLPNLKKLD 180 (198)
T ss_dssp HHCSSCSEEC
T ss_pred HhCCCcEEEC
Confidence 4556666665
No 144
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.31 E-value=2.3e-07 Score=71.13 Aligned_cols=84 Identities=14% Similarity=0.154 Sum_probs=36.3
Q ss_pred CcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC----C----CCCccEEeccCCCCCccccccC-CCCC
Q 023528 137 NLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR----F----PASLTQLGISDMPTLKCLSSVG-ENLT 207 (281)
Q Consensus 137 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~----~~~L~~L~l~~c~~l~~l~~~~-~~l~ 207 (281)
.|+.|++++|. +++..-..+..+++|++|++++ |..+++... . .++|++|++++|..+++-.... ..++
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~-C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCK-CHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEES-CTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCC-CCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 34455555543 3222222344555555555555 554443110 0 1134444444444444321111 3445
Q ss_pred CcCEEeccCCCCccc
Q 023528 208 SLETLDLSNCPKLKY 222 (281)
Q Consensus 208 ~L~~L~l~~c~~l~~ 222 (281)
+|++|++++|+++++
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 555555555555543
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.25 E-value=5.2e-06 Score=70.90 Aligned_cols=88 Identities=18% Similarity=0.064 Sum_probs=40.1
Q ss_pred ccccccccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccC
Q 023528 101 NLKALPNCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSS 178 (281)
Q Consensus 101 ~l~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 178 (281)
.+..+|. +..+++|++|++++.+.+..++.. ..+++|+.|++++| .++.++...|.++++|+.|++++ +.+..+
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~--N~l~~~ 95 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF--NALESL 95 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS--SCCSCC
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC--Ccccee
Confidence 3444444 444444555555432334443321 33445555555542 33333333455555666666655 344444
Q ss_pred CC---CCCCccEEeccC
Q 023528 179 PR---FPASLTQLGISD 192 (281)
Q Consensus 179 ~~---~~~~L~~L~l~~ 192 (281)
|. ...+|+.|++.+
T Consensus 96 ~~~~~~~~~L~~l~l~~ 112 (347)
T 2ifg_A 96 SWKTVQGLSLQELVLSG 112 (347)
T ss_dssp CSTTTCSCCCCEEECCS
T ss_pred CHHHcccCCceEEEeeC
Confidence 43 111256666665
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.25 E-value=4.8e-06 Score=71.12 Aligned_cols=104 Identities=23% Similarity=0.208 Sum_probs=71.1
Q ss_pred ceeeccCCcCccccccCCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCccccccc-c
Q 023528 29 EHLEVTHCSNLAFLSWNGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALP-N 107 (281)
Q Consensus 29 ~~L~l~~~~~l~~l~~~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp-~ 107 (281)
..++.++...+..+|.++.+++ |++|+|+++..++.++. ..+..+++|++|++++| .++.++ .
T Consensus 11 ~~v~~~~~n~l~~ip~l~~~~~-L~~L~l~~~n~l~~~~~--------------~~~~~l~~L~~L~l~~N-~l~~~~~~ 74 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHHLPGAEN-LTELYIENQQHLQHLEL--------------RDLRGLGELRNLTIVKS-GLRFVAPD 74 (347)
T ss_dssp SCEECCSSCCCTTTTTSCSCSC-CSEEECCSCSSCCEECG--------------GGSCSCCCCSEEECCSS-CCCEECTT
T ss_pred CEEEcCCCCCCCccCCCCCCCC-eeEEEccCCCCCCCcCh--------------hHhccccCCCEEECCCC-ccceeCHH
Confidence 4567776535788888777888 99988876333443321 23445679999999996 455554 5
Q ss_pred cCcCCCCccEEeecCCcCCcccCCCC-CCCCcCeEEecCCCCc
Q 023528 108 CIHNLTSLLHLEIRECRSLVSFPEDG-FPTNLQSLVVDDLKIS 149 (281)
Q Consensus 108 ~~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~~ 149 (281)
.+..+++|++|++++ +.+..+|... ....|+.|++.+|...
T Consensus 75 ~~~~l~~L~~L~l~~-N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 75 AFHFTPRLSRLNLSF-NALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp GGGSCSCCCEEECCS-SCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred HhcCCcCCCEEeCCC-CccceeCHHHcccCCceEEEeeCCCcc
Confidence 678899999999988 4666776542 2223899999886543
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.00 E-value=1.1e-05 Score=69.33 Aligned_cols=12 Identities=17% Similarity=0.008 Sum_probs=6.6
Q ss_pred CCCcEEecCCCc
Q 023528 230 KSLLRLGIDDCP 241 (281)
Q Consensus 230 ~~L~~L~l~~c~ 241 (281)
++|+.|++.+|.
T Consensus 307 ~~L~~L~L~~n~ 318 (362)
T 2ra8_A 307 KHLKFINMKYNY 318 (362)
T ss_dssp TTCSEEECCSBB
T ss_pred CcceEEECCCCc
Confidence 455555555554
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.81 E-value=1.2e-05 Score=69.18 Aligned_cols=164 Identities=19% Similarity=0.095 Sum_probs=91.7
Q ss_pred CCCcCCcCcEEEecCCcchhccccceeecCCCCCccCCCCCCCCCCccEEEeccCcccccccccCcCCCCccEEeecCCc
Q 023528 45 NGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESFPEGGLPSTKLTRLTIWKCKNLKALPNCIHNLTSLLHLEIRECR 124 (281)
Q Consensus 45 ~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 124 (281)
...+++ |+.|.+.+.. ... ..++++. ...+......+|+|+.|.+++|..+. ++. + .+++|++|.+..|.
T Consensus 135 ~~~l~~-L~~L~l~~~~-~e~----~~is~~~-~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~ 204 (362)
T 2ra8_A 135 KEKFAH-FEGLFWGDID-FEE----QEISWIE-QVDLSPVLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGG 204 (362)
T ss_dssp HHHHTT-CSEEEECCCC-TTT----CCGGGCB-CCBCHHHHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSB
T ss_pred hhhcch-hhheeecCcc-hhh----ccccccc-ccCHHHHHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCC
Confidence 345778 9998886532 111 1111110 01122222346789999998874443 333 3 37889999987653
Q ss_pred CCcccC--C--CCCCCCcCeEEecCCCC-------ccccchh-hhccCCCcceEEeecCCCCCccCCC------CCCCcc
Q 023528 125 SLVSFP--E--DGFPTNLQSLVVDDLKI-------SKPLFEW-GLDRFACLRELRIRGGCPDLVSSPR------FPASLT 186 (281)
Q Consensus 125 ~l~~l~--~--~~~~~~L~~L~l~~~~~-------~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~------~~~~L~ 186 (281)
+..-. . ...+++|++|+++.+.. ...+... ....+++|++|++.+ |........ ..++|+
T Consensus 205 -l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~-~~i~~~~~~~la~a~~~~~L~ 282 (362)
T 2ra8_A 205 -LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVD-AEEQNVVVEMFLESDILPQLE 282 (362)
T ss_dssp -CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEES-CTTHHHHHHHHHHCSSGGGCS
T ss_pred -CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCC-CCCchHHHHHHHhCccCCCCC
Confidence 22111 0 12568899998853211 1111110 113578999999987 543221111 345899
Q ss_pred EEeccCCCCCcc-----ccccCCCCCCcCEEeccCCCCccc
Q 023528 187 QLGISDMPTLKC-----LSSVGENLTSLETLDLSNCPKLKY 222 (281)
Q Consensus 187 ~L~l~~c~~l~~-----l~~~~~~l~~L~~L~l~~c~~l~~ 222 (281)
+|+++. +.++. ++.....+++|+.|++++| .+++
T Consensus 283 ~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d 321 (362)
T 2ra8_A 283 TMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSD 321 (362)
T ss_dssp EEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCH
T ss_pred EEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC-cCCH
Confidence 999987 56664 3311146789999999986 4543
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.70 E-value=2.9e-06 Score=73.47 Aligned_cols=128 Identities=15% Similarity=0.035 Sum_probs=75.8
Q ss_pred CCccEEEeccCcccccccccC-cCCCCccEEeecCCcCCcccCCC-------CCCCCcCeEEecCCCCccccc----hhh
Q 023528 89 TKLTRLTIWKCKNLKALPNCI-HNLTSLLHLEIRECRSLVSFPED-------GFPTNLQSLVVDDLKISKPLF----EWG 156 (281)
Q Consensus 89 ~~L~~L~l~~c~~l~~lp~~~-~~l~~L~~L~l~~~~~l~~l~~~-------~~~~~L~~L~l~~~~~~~~~~----~~~ 156 (281)
++|++|++++|..-..-...+ ..+++|++|++++| .++..... ...++|++|++++|. +++.. ...
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~ 178 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEG 178 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHH
Confidence 589999999874321111122 34567889999886 33321110 234688999998865 32211 123
Q ss_pred hccCCCcceEEeecCCCCCccCC-----C---CCCCccEEeccCCCCCccc-----cccCCCCCCcCEEeccCCCCccc
Q 023528 157 LDRFACLRELRIRGGCPDLVSSP-----R---FPASLTQLGISDMPTLKCL-----SSVGENLTSLETLDLSNCPKLKY 222 (281)
Q Consensus 157 ~~~l~~L~~L~l~~~~~~~~~~~-----~---~~~~L~~L~l~~c~~l~~l-----~~~~~~l~~L~~L~l~~c~~l~~ 222 (281)
+...++|++|++++ | .+++.. . ..++|++|++++| .++.. .......++|++|++++| .++.
T Consensus 179 L~~~~~L~~L~Ls~-N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~ 253 (372)
T 3un9_A 179 LAGNTSVTHLSLLH-T-GLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFN-ELSS 253 (372)
T ss_dssp HHTCSSCCEEECTT-S-SCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTS-SCCH
T ss_pred HhcCCCcCEEeCCC-C-CCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCC-CCCH
Confidence 46678889999887 4 344321 1 3457888888884 56542 211135578888888885 4543
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.51 E-value=5.5e-06 Score=71.69 Aligned_cols=104 Identities=18% Similarity=0.098 Sum_probs=53.3
Q ss_pred CCccEEEeccCccccc-----ccccC-cCCCCccEEeecCCcCCcc-----cCCC-CCCCCcCeEEecCCCCccccc---
Q 023528 89 TKLTRLTIWKCKNLKA-----LPNCI-HNLTSLLHLEIRECRSLVS-----FPED-GFPTNLQSLVVDDLKISKPLF--- 153 (281)
Q Consensus 89 ~~L~~L~l~~c~~l~~-----lp~~~-~~l~~L~~L~l~~~~~l~~-----l~~~-~~~~~L~~L~l~~~~~~~~~~--- 153 (281)
++|++|++++|. ++. +...+ ...++|++|++++|. ++. +... ...++|++|++++|. +++..
T Consensus 126 ~~L~~L~Ls~n~-l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~ 202 (372)
T 3un9_A 126 LRARKLGLQLNS-LGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLEL 202 (372)
T ss_dssp HTEEEEECCSSC-CCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHH
T ss_pred HhccHhhcCCCC-CCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHH
Confidence 367777777753 321 11112 235667777777752 322 1110 234567777777754 32211
Q ss_pred -hhhhccCCCcceEEeecCCCCCccCCC--------CCCCccEEeccCCCCCcc
Q 023528 154 -EWGLDRFACLRELRIRGGCPDLVSSPR--------FPASLTQLGISDMPTLKC 198 (281)
Q Consensus 154 -~~~~~~l~~L~~L~l~~~~~~~~~~~~--------~~~~L~~L~l~~c~~l~~ 198 (281)
...+...++|++|++++ | .+++... ..++|++|++++| .++.
T Consensus 203 L~~~L~~~~~L~~L~Ls~-N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~ 253 (372)
T 3un9_A 203 LAAQLDRNRQLQELNVAY-N-GAGDTAALALARAAREHPSLELLHLYFN-ELSS 253 (372)
T ss_dssp HHHHGGGCSCCCEEECCS-S-CCCHHHHHHHHHHHHHCSSCCEEECTTS-SCCH
T ss_pred HHHHHhcCCCcCeEECCC-C-CCCHHHHHHHHHHHHhCCCCCEEeccCC-CCCH
Confidence 12345566777777776 3 3332211 2346777777773 4543
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.49 E-value=0.0095 Score=51.49 Aligned_cols=193 Identities=14% Similarity=0.156 Sum_probs=106.6
Q ss_pred CcCceeeccCCcCcccccc--CCCcCCcCcEEEecCCcchhccccceeecCCCCCccC---------CCCCCCCCCccEE
Q 023528 26 ATLEHLEVTHCSNLAFLSW--NGNLPRALKYLYVKDCSKLESLAERIWIFGCPNLESF---------PEGGLPSTKLTRL 94 (281)
Q Consensus 26 ~~L~~L~l~~~~~l~~l~~--~~~l~~~L~~L~l~~~~~l~~~p~~L~l~~~~~l~~l---------~~~~~~~~~L~~L 94 (281)
++|+.+.+.+. +..++. +....+ |+.+.+... ++.++. -...+|..++.+ ........+|+.+
T Consensus 162 ~~L~~i~l~~~--~~~I~~~~F~~c~~-L~~i~l~~~--~~~I~~-~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i 235 (394)
T 4fs7_A 162 ESLEYVSLPDS--METLHNGLFSGCGK-LKSIKLPRN--LKIIRD-YCFAECILLENMEFPNSLYYLGDFALSKTGVKNI 235 (394)
T ss_dssp TTCCEEECCTT--CCEECTTTTTTCTT-CCBCCCCTT--CCEECT-TTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEE
T ss_pred CCCcEEecCCc--cceeccccccCCCC-ceEEEcCCC--ceEeCc-hhhccccccceeecCCCceEeehhhcccCCCceE
Confidence 56777766532 233332 445556 666666432 222221 112233333222 1222334567777
Q ss_pred EeccCccccccc-ccCcCCCCccEEeecCCcCCcccCCC--CCCCCcCeEEecCCCCccccchhhhccCCCcceEEeecC
Q 023528 95 TIWKCKNLKALP-NCIHNLTSLLHLEIRECRSLVSFPED--GFPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGG 171 (281)
Q Consensus 95 ~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 171 (281)
.+... +..+. ..+..+..++.+.+... ...+... .....++.+..... .++...+..+.+|+.+.+..
T Consensus 236 ~ip~~--~~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~----~i~~~~F~~~~~L~~i~l~~- 306 (394)
T 4fs7_A 236 IIPDS--FTELGKSVFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKVIYGSV----IVPEKTFYGCSSLTEVKLLD- 306 (394)
T ss_dssp EECTT--CCEECSSTTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEEEECSS----EECTTTTTTCTTCCEEEECT-
T ss_pred EECCC--ceecccccccccccceeEEcCCC--cceeeccccccccccceeccCce----eecccccccccccccccccc-
Confidence 66542 23332 34566777777777642 3333332 34566666655432 23333567788888888865
Q ss_pred CCCCccCCC----CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCCCC--CCCCcEEecCC
Q 023528 172 CPDLVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQGL--PKSLLRLGIDD 239 (281)
Q Consensus 172 ~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~~~--~~~L~~L~l~~ 239 (281)
.++.++. ...+|+.+++.. .++.++... .++.+|+.+.+.. .+..+...++ +.+|+.+++..
T Consensus 307 --~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 307 --SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp --TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred --ccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence 2444443 456788888864 477777555 7888888888865 3666766544 57788887753
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.32 E-value=0.038 Score=47.62 Aligned_cols=97 Identities=11% Similarity=0.159 Sum_probs=57.9
Q ss_pred CCcCeEEecCCCCccccchhhhccCCCcceEEeecCCCCCccCCC----CCCCccEEeccCCCCCccccccC-CCCCCcC
Q 023528 136 TNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENLTSLE 210 (281)
Q Consensus 136 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~ 210 (281)
.+|+.+.+.+ ....+....+.++++|+.+.+.. .+..++. ...+|+.+.+.. .++.+.... .++.+|+
T Consensus 265 ~~L~~i~lp~--~~~~I~~~aF~~c~~L~~i~l~~---~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 265 AYLASVKMPD--SVVSIGTGAFMNCPALQDIEFSS---RITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLE 337 (394)
T ss_dssp SSCCEEECCT--TCCEECTTTTTTCTTCCEEECCT---TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCC
T ss_pred ccccEEeccc--ccceecCcccccccccccccCCC---cccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCC
Confidence 4455555432 12233333455666666666653 3344443 345777877764 467776444 7778888
Q ss_pred EEeccCCCCcccccCCCC--CCCCcEEecCCCc
Q 023528 211 TLDLSNCPKLKYFSKQGL--PKSLLRLGIDDCP 241 (281)
Q Consensus 211 ~L~l~~c~~l~~i~~~~~--~~~L~~L~l~~c~ 241 (281)
.+.+.. .++.+...++ +.+|+.+++.+..
T Consensus 338 ~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 338 RIAIPS--SVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp EEEECT--TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred EEEECc--ccCEEhHhHhhCCCCCCEEEECCce
Confidence 888853 3566665444 6788888887754
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.10 E-value=0.048 Score=46.98 Aligned_cols=76 Identities=18% Similarity=0.267 Sum_probs=46.7
Q ss_pred hhccCCCcceEEeecCCCCCccCCC----CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCCCC--
Q 023528 156 GLDRFACLRELRIRGGCPDLVSSPR----FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQGL-- 228 (281)
Q Consensus 156 ~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~~~-- 228 (281)
.|..+..|+.+.+.. ....+.. ...+|+.+.+. +.++.++... .++.+|+.+.+.. .++.+...++
T Consensus 260 aF~~c~~L~~i~lp~---~~~~I~~~aF~~c~~L~~i~l~--~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~ 332 (394)
T 4gt6_A 260 AFDSCAYLASVKMPD---SVVSIGTGAFMNCPALQDIEFS--SRITELPESVFAGCISLKSIDIPE--GITQILDDAFAG 332 (394)
T ss_dssp TTTTCSSCCEEECCT---TCCEECTTTTTTCTTCCEEECC--TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTT
T ss_pred eeeecccccEEeccc---ccceecCcccccccccccccCC--CcccccCceeecCCCCcCEEEeCC--cccEehHhHhhC
Confidence 455666677666654 1122222 34567777775 3577777555 7788888888864 4666665444
Q ss_pred CCCCcEEecC
Q 023528 229 PKSLLRLGID 238 (281)
Q Consensus 229 ~~~L~~L~l~ 238 (281)
+.+|+.+.+.
T Consensus 333 C~~L~~i~ip 342 (394)
T 4gt6_A 333 CEQLERIAIP 342 (394)
T ss_dssp CTTCCEEEEC
T ss_pred CCCCCEEEEC
Confidence 5677777663
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.90 E-value=0.0008 Score=55.12 Aligned_cols=78 Identities=19% Similarity=0.169 Sum_probs=42.8
Q ss_pred CCCccEEEeccCccccc---ccccCcCCCCccEEeecCCcCCcccCCCCCCC--CcCeEEecCCCCccccc------hhh
Q 023528 88 STKLTRLTIWKCKNLKA---LPNCIHNLTSLLHLEIRECRSLVSFPEDGFPT--NLQSLVVDDLKISKPLF------EWG 156 (281)
Q Consensus 88 ~~~L~~L~l~~c~~l~~---lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~--~L~~L~l~~~~~~~~~~------~~~ 156 (281)
+++|+.|++++|. +.. +|..+..+++|+.|++++ +.+..+.....+. +|++|++.+|+....++ ...
T Consensus 169 l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCC-CccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 5677777777753 333 333445677777777776 3444332222222 67777777765443332 123
Q ss_pred hccCCCcceEE
Q 023528 157 LDRFACLRELR 167 (281)
Q Consensus 157 ~~~l~~L~~L~ 167 (281)
+..+++|+.|+
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 45666666664
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.85 E-value=0.074 Score=45.80 Aligned_cols=54 Identities=26% Similarity=0.313 Sum_probs=35.8
Q ss_pred CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCCCcccccCCCC--CCCCcEEecC
Q 023528 181 FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCPKLKYFSKQGL--PKSLLRLGID 238 (281)
Q Consensus 181 ~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i~~~~~--~~~L~~L~l~ 238 (281)
...+|+.+.+.+ .++.++... .++.+|+.+++.. .++.+...++ +.+|+.+.+.
T Consensus 295 ~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 295 GCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFP 351 (394)
T ss_dssp TCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCC
T ss_pred cccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEEC
Confidence 345778887764 477777554 7888899998863 4666665444 4567766653
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.76 E-value=0.1 Score=44.55 Aligned_cols=21 Identities=14% Similarity=0.287 Sum_probs=10.2
Q ss_pred CCcccCCCCCcc-CcCceeeccC
Q 023528 14 SRTPFSSENELP-ATLEHLEVTH 35 (281)
Q Consensus 14 ~l~~~~~~~~~~-~~L~~L~l~~ 35 (281)
+++.+ ...+|. .+|+.+.+..
T Consensus 101 ~l~~I-~~~aF~~~~L~~i~lp~ 122 (379)
T 4h09_A 101 RVKKF-GDYVFQGTDLDDFEFPG 122 (379)
T ss_dssp TCCEE-CTTTTTTCCCSEEECCT
T ss_pred eeeEe-ccceeccCCcccccCCC
Confidence 34444 333333 4666666643
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.35 E-value=0.4 Score=40.75 Aligned_cols=32 Identities=16% Similarity=0.295 Sum_probs=15.5
Q ss_pred CCccEEeccCCCCCccccccC-CCCCCcCEEecc
Q 023528 183 ASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLS 215 (281)
Q Consensus 183 ~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~ 215 (281)
.+|+.+.+.+ +.++.++... .++.+|+.+.+.
T Consensus 286 ~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 286 SNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TTCCEEEECC-TTCCEECTTTTTTCTTCCEEECC
T ss_pred cccccccccc-cccceehhhhhcCCCCCCEEEcC
Confidence 3455555544 3444444333 455555555553
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.81 E-value=0.001 Score=51.36 Aligned_cols=14 Identities=21% Similarity=0.337 Sum_probs=7.5
Q ss_pred CCcCCcCcEEEecCC
Q 023528 46 GNLPRALKYLYVKDC 60 (281)
Q Consensus 46 ~~l~~~L~~L~l~~~ 60 (281)
...+. |++|++++|
T Consensus 33 ~~~~~-L~~L~L~~n 46 (185)
T 1io0_A 33 NNDPD-LEEVNLNNI 46 (185)
T ss_dssp TTCTT-CCEEECTTC
T ss_pred hcCCC-CCEEEecCC
Confidence 33445 666666555
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.59 E-value=0.0081 Score=46.15 Aligned_cols=37 Identities=22% Similarity=0.187 Sum_probs=20.1
Q ss_pred CCCCCcCEEec--cCCCCcccccC----CC--CCCCCcEEecCCCc
Q 023528 204 ENLTSLETLDL--SNCPKLKYFSK----QG--LPKSLLRLGIDDCP 241 (281)
Q Consensus 204 ~~l~~L~~L~l--~~c~~l~~i~~----~~--~~~~L~~L~l~~c~ 241 (281)
...++|++|++ ++ +.++.... .. ..++|++|++++|.
T Consensus 118 ~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 118 QSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp GGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 45566777777 44 34443211 00 13567777777775
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.34 E-value=0.014 Score=47.65 Aligned_cols=56 Identities=21% Similarity=0.178 Sum_probs=25.9
Q ss_pred cCCCcceEEeecCCCCCccCC---C---CCCCccEEeccCCCCCccccccCCCCC--CcCEEeccCCC
Q 023528 159 RFACLRELRIRGGCPDLVSSP---R---FPASLTQLGISDMPTLKCLSSVGENLT--SLETLDLSNCP 218 (281)
Q Consensus 159 ~l~~L~~L~l~~~~~~~~~~~---~---~~~~L~~L~l~~c~~l~~l~~~~~~l~--~L~~L~l~~c~ 218 (281)
++++|+.|++++ +.+..++ . ..++|+.|+|++ +.++.+. ....+. +|++|++++++
T Consensus 168 ~l~~L~~L~Ls~--N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~-~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSN--NRLYRLDDMSSIVQKAPNLKILNLSG-NELKSER-ELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTT--SCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGG-GGGGGTTSCCSEEECTTST
T ss_pred hCCCCCEEECCC--CCCCCCccchhHHhhCCCCCEEECCC-CccCCch-hhhhcccCCcceEEccCCc
Confidence 455566666665 3333322 1 234555555555 4444432 121122 56666666644
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.95 E-value=0.05 Score=39.12 Aligned_cols=45 Identities=31% Similarity=0.437 Sum_probs=33.4
Q ss_pred CCCc--cCCC-CCCCccEEeccCCCCCccccccC-CCCCCcCEEeccCCC
Q 023528 173 PDLV--SSPR-FPASLTQLGISDMPTLKCLSSVG-ENLTSLETLDLSNCP 218 (281)
Q Consensus 173 ~~~~--~~~~-~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~ 218 (281)
..++ .+|. .+.++++|+|++ |.++.++... ..+++|++|++.+++
T Consensus 18 ~~L~~~~vP~~lp~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 18 RGLTWASLPTAFPVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp SCCCTTTSCSCCCTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCccccCCCCCCcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 4455 6775 677888888888 6788887555 777888888888753
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.41 E-value=0.42 Score=34.13 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=21.3
Q ss_pred CCCCcCeEEecCCCCccccchhhhccCCCcceEEeec
Q 023528 134 FPTNLQSLVVDDLKISKPLFEWGLDRFACLRELRIRG 170 (281)
Q Consensus 134 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 170 (281)
.+++|+.|++++ +.++.++...|..+++|+.|++++
T Consensus 29 lp~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 29 FPVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGA 64 (130)
T ss_dssp CCTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCS
T ss_pred CCcCCCEEECCC-CcCCccChhhhhhccccCEEEecC
Confidence 445566666665 445555555566666666666665
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=66.21 E-value=5.3 Score=30.66 Aligned_cols=34 Identities=21% Similarity=0.104 Sum_probs=17.5
Q ss_pred CCccEEeccCCCCCcc-----ccccCCCCCCcCEEeccCC
Q 023528 183 ASLTQLGISDMPTLKC-----LSSVGENLTSLETLDLSNC 217 (281)
Q Consensus 183 ~~L~~L~l~~c~~l~~-----l~~~~~~l~~L~~L~l~~c 217 (281)
+.|++|+|+. +.++. +......-+.|++|+++++
T Consensus 98 ~tL~~L~L~~-N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 98 PSLRVLNVES-NFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp SSCCEEECCS-SBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CccCeEecCC-CcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 3566666665 34442 2211234456777777653
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=57.27 E-value=6.7 Score=30.08 Aligned_cols=9 Identities=11% Similarity=0.353 Sum_probs=4.8
Q ss_pred CccEEeccC
Q 023528 184 SLTQLGISD 192 (281)
Q Consensus 184 ~L~~L~l~~ 192 (281)
.|+.|++++
T Consensus 127 tL~~L~L~n 135 (197)
T 1pgv_A 127 SIVEFKADN 135 (197)
T ss_dssp CCSEEECCC
T ss_pred ceeEEECCC
Confidence 455555554
Done!