BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023529
(281 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E2N|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In The
Apo Form
pdb|2E2N|B Chain B, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In The
Apo Form
pdb|2E2O|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In
Complex With Glucose
pdb|2E2P|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In
Complex With Adp
pdb|2E2P|B Chain B, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In
Complex With Adp
pdb|2E2Q|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In
Complex With Xylose, Mg2+, And Adp
pdb|2E2Q|B Chain B, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In
Complex With Xylose, Mg2+, And Adp
Length = 299
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 14/158 (8%)
Query: 119 SGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWAR-IAALV 177
S Y + +AL V++ DG T+L + +L T+ + DEL+ W+Y +A++
Sbjct: 143 SAYWVGRKALRKVLKMMDGLENKTILYNKVLKTINVKDLDELVMWSYTSSCQIDLVASIA 202
Query: 178 PVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANR 237
V A GD VA IL+ E LA + +++ + + + GG+ +N
Sbjct: 203 KAVDEAANEGDTVAMDILKQGAELLASQAVYLARKIGTN--------KVYLKGGMFRSN- 253
Query: 238 RWDIGREVVKCILRDYPGAVPIRPKVEPAVGAALLAWN 275
I + L G + K P +GA +LA+
Sbjct: 254 ---IYHKFFTLYLEK-EGIISDLGKRSPEIGAVILAYK 287
>pdb|2CH5|A Chain A, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With N-Acetylglucosamine
pdb|2CH5|B Chain B, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With N-Acetylglucosamine
pdb|2CH5|C Chain C, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With N-Acetylglucosamine
pdb|2CH5|D Chain D, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With N-Acetylglucosamine
Length = 347
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 7/130 (5%)
Query: 119 SGYGIAAQALTAVIRAYDG--RGPDTMLTSNILSTLELSSPDEL--IGWTYVDPSWARIA 174
S Y IA QA+ V + D P + PD L + Y D R A
Sbjct: 158 SAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILTHLYRDFDKCRFA 217
Query: 175 ALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLE 234
+ A+ GD ++ I + + E L + AV+ + GK P++ VG V +
Sbjct: 218 GFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGKIGLPILCVGSVWK 277
Query: 235 ANRRWDIGRE 244
+ W++ +E
Sbjct: 278 S---WELLKE 284
>pdb|2CH6|A Chain A, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With Adp And Glucose
pdb|2CH6|B Chain B, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With Adp And Glucose
pdb|2CH6|C Chain C, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With Adp And Glucose
pdb|2CH6|D Chain D, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With Adp And Glucose
Length = 344
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 7/130 (5%)
Query: 119 SGYGIAAQALTAVIRAYDG--RGPDTMLTSNILSTLELSSPDEL--IGWTYVDPSWARIA 174
S Y IA QA+ V + D P + PD L + Y D R A
Sbjct: 155 SAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILTHLYRDFDKCRFA 214
Query: 175 ALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLE 234
+ A+ GD ++ I + + E L + AV+ + GK P++ VG V +
Sbjct: 215 GFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGKIGLPILCVGSVWK 274
Query: 235 ANRRWDIGRE 244
+ W++ +E
Sbjct: 275 S---WELLKE 281
>pdb|1DIK|A Chain A, Pyruvate Phosphate Dikinase
Length = 874
Score = 31.2 bits (69), Expect = 0.65, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 185 EAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGRE 244
E G + D ++ELA KAV + +++GE+ ++G V R WD R
Sbjct: 162 EKGVHFDTDLTADDLKELAEKFKAVYKE-AMNGEEFPQEPKDQLMGAVKAVFRSWDNPRA 220
Query: 245 VVKCILRDYPG 255
+V + D PG
Sbjct: 221 IVYRRMNDIPG 231
>pdb|1KBL|A Chain A, Pyruvate Phosphate Dikinase
pdb|1KC7|A Chain A, Pyruvate Phosphate Dikinase With Bound
Mg-Phosphonopyruvate
Length = 873
Score = 31.2 bits (69), Expect = 0.65, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 185 EAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGRE 244
E G + D ++ELA KAV + +++GE+ ++G V R WD R
Sbjct: 161 EKGVHFDTDLTADDLKELAEKFKAVYKE-AMNGEEFPQEPKDQLMGAVKAVFRSWDNPRA 219
Query: 245 VVKCILRDYPG 255
+V + D PG
Sbjct: 220 IVYRRMNDIPG 230
>pdb|1GGO|A Chain A, T453a Mutant Of Pyruvate, Phosphate Dikinase
Length = 873
Score = 31.2 bits (69), Expect = 0.65, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 185 EAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGRE 244
E G + D ++ELA KAV + +++GE+ ++G V R WD R
Sbjct: 161 EKGVHFDTDLTADDLKELAEKFKAVYKE-AMNGEEFPQEPKDQLMGAVKAVFRSWDNPRA 219
Query: 245 VVKCILRDYPG 255
+V + D PG
Sbjct: 220 IVYRRMNDIPG 230
>pdb|2DIK|A Chain A, R337a Mutant Of Pyruvate Phosphate Dikinase
Length = 873
Score = 31.2 bits (69), Expect = 0.66, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 185 EAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGRE 244
E G + D ++ELA KAV + +++GE+ ++G V R WD R
Sbjct: 161 EKGVHFDTDLTADDLKELAEKFKAVYKE-AMNGEEFPQEPKDQLMGAVKAVFRSWDNPRA 219
Query: 245 VVKCILRDYPG 255
+V + D PG
Sbjct: 220 IVYRRMNDIPG 230
>pdb|1JDE|A Chain A, K22a Mutant Of Pyruvate, Phosphate Dikinase
Length = 873
Score = 31.2 bits (69), Expect = 0.66, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 185 EAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGRE 244
E G + D ++ELA KAV + +++GE+ ++G V R WD R
Sbjct: 161 EKGVHFDTDLTADDLKELAEKFKAVYKE-AMNGEEFPQEPKDQLMGAVKAVFRSWDNPRA 219
Query: 245 VVKCILRDYPG 255
+V + D PG
Sbjct: 220 IVYRRMNDIPG 230
>pdb|2R82|A Chain A, Pyruvate Phosphate Dikinase (Ppdk) Triple Mutant
R219eE271RS262D Adapts A Second Conformational State
Length = 874
Score = 28.9 bits (63), Expect = 3.3, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 185 EAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGRE 244
E G + D ++ELA KAV + +++GE+ ++G V R WD
Sbjct: 162 EKGVHFDTDLTADDLKELAEKFKAVYKE-AMNGEEFPQEPKDQLMGAVKAVFRSWDNPEA 220
Query: 245 VVKCILRDYPG 255
+V + D PG
Sbjct: 221 IVYRRMNDIPG 231
>pdb|3IM9|A Chain A, Crystal Structure Of Mcat From Staphylococcus Aureus
Length = 316
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 16/103 (15%)
Query: 19 GGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIE 78
G +LGLD +C + S D + +P + S H
Sbjct: 135 GSMAAVLGLDFDKVDEICKSL---SSDDKIIEPANINCPGQIVVSGH------------- 178
Query: 79 KVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLSGY 121
K + D L++ G + A R + LAVSG H + + I S Y
Sbjct: 179 KALIDELVEKGKSLGAKRVMPLAVSGPFHSSLMKVIEEDFSSY 221
>pdb|2FIQ|A Chain A, Crystal Structure Of Putative Tagatose 6-Phosphate Kinase
pdb|2FIQ|B Chain B, Crystal Structure Of Putative Tagatose 6-Phosphate Kinase
pdb|2FIQ|C Chain C, Crystal Structure Of Putative Tagatose 6-Phosphate Kinase
pdb|2FIQ|D Chain D, Crystal Structure Of Putative Tagatose 6-Phosphate Kinase
Length = 420
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 13/91 (14%)
Query: 50 DPLP-----VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104
DP+P V RAA C SV D RE + V+ + G SA+++V
Sbjct: 132 DPIPLAPETVAERAAVLCFAAESVATDCQREQLSYVIGTEVPVPGGEASAIQSV-----H 186
Query: 105 VNHPTDQQRILNWLSGYGIA---AQALTAVI 132
+ H D L IA +ALT VI
Sbjct: 187 ITHVEDAANTLRTHQKAFIARGLTEALTRVI 217
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,470,712
Number of Sequences: 62578
Number of extensions: 328883
Number of successful extensions: 731
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 721
Number of HSP's gapped (non-prelim): 24
length of query: 281
length of database: 14,973,337
effective HSP length: 98
effective length of query: 183
effective length of database: 8,840,693
effective search space: 1617846819
effective search space used: 1617846819
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)