BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023529
(281 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54PM7|NAGK_DICDI N-acetyl-D-glucosamine kinase OS=Dictyostelium discoideum GN=nagk
PE=3 SV=2
Length = 319
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 93/164 (56%), Gaps = 9/164 (5%)
Query: 116 NWLSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDP---SWAR 172
++ SGY I L V++A D GP T LT +L L+L+ ++LI W Y DP SW +
Sbjct: 160 DYGSGYQIGYDILRHVLKAKDQVGPKTSLTQVLLEKLQLTKEEDLISWAY-DPKTQSWQK 218
Query: 173 IAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGV 232
A L P+ A+ GDE++N IL D+ L + +V+++L L D + FPLV GG
Sbjct: 219 FAQLSPLAFEQAQLGDEISNLILVDAANALYDLINSVIKKLGL---DKEEKFPLVYTGGN 275
Query: 233 LEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGAALLAWNS 276
+E R+ + + K I+ +YP A + +P++GAALLA NS
Sbjct: 276 IE--RKGILSDLLSKKIMENYPNAEILNTTCDPSMGAALLALNS 317
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 23/132 (17%)
Query: 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIE-- 78
+E+ +G+DGG T T + + LAR + CSN++SVGED A+ I
Sbjct: 3 KEIFIGIDGGGTKTSTVAVDSNGQE---------LARHTSPCSNYHSVGEDLAKAAINEG 53
Query: 79 -----KVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLS-------GYGIAAQ 126
+ + + + + V ++CL +SGV+ D+ + +W++ Y I
Sbjct: 54 IKYVIRKVKETITDDDNKEVTVGSICLGMSGVDREKDKLLVKSWVTELLGESINYSIHND 113
Query: 127 ALTAVIRAYDGR 138
A+ A+ G+
Sbjct: 114 AIVALSSGTQGK 125
>sp|Q06164|MMS22_YEAST Methyl methanesulfonate-sensitivity protein 22 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MMS22 PE=1
SV=1
Length = 1454
Score = 34.3 bits (77), Expect = 1.1, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 11/75 (14%)
Query: 178 PVVVSCAEAGDEVANKILQ-----------DSVEELALSVKAVVQRLSLSGEDGKHSFPL 226
P+V+S +EA DE + I + ++V+E + S K V +RLSL G+ P
Sbjct: 8 PIVISDSEATDEEISIIYEPEFNENYLWAEENVQEASRSQKIVTERLSLDSTAGESCTPS 67
Query: 227 VMVGGVLEANRRWDI 241
V+ + RW +
Sbjct: 68 VVTDTQVTTGLRWSL 82
>sp|P22983|PPDK_CLOSY Pyruvate, phosphate dikinase OS=Clostridium symbiosum GN=ppdK PE=1
SV=5
Length = 874
Score = 31.2 bits (69), Expect = 8.6, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 185 EAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGRE 244
E G + D ++ELA KAV + +++GE+ ++G V R WD R
Sbjct: 162 EKGVHFDTDLTADDLKELAEKFKAVYKE-AMNGEEFPQEPKDQLMGAVKAVFRSWDNPRA 220
Query: 245 VVKCILRDYPG 255
+V + D PG
Sbjct: 221 IVYRRMNDIPG 231
>sp|P57163|RPOD_BUCAI RNA polymerase sigma factor RpoD OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=rpoD PE=3 SV=1
Length = 612
Score = 31.2 bits (69), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 17/115 (14%)
Query: 157 PDELIGWTYVDPSWARIAAL-VPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRL-S 214
P+++I +D I + +PVV +A D + N+I D+ E+ +V+A Q L S
Sbjct: 32 PEDIIDSEQIDDIIQMINDMGIPVVEEAPDADDLILNEINTDTDED---AVEAATQVLSS 88
Query: 215 LSGEDGKHSFPLVMV------------GGVLEANRRWDIGREVVKCILRDYPGAV 257
+ E G+ + P+ M G ++ +R + G V+C + +YP A+
Sbjct: 89 VESELGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEEGINQVQCSVSEYPEAI 143
>sp|A0JC77|GRII_STRGR 2-amino-4,5-dihydroxy-6-one-heptanoic acid-7-phosphate synthase
OS=Streptomyces griseus GN=griI PE=1 SV=1
Length = 274
Score = 31.2 bits (69), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 165 YVDPSWA-RIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHS 223
+VDP W R + +V + S A D A ++ E L + AV ++L E +H
Sbjct: 68 HVDPEWFTRTSLIVHLSASTVHAPDPNAKYLVSSVEESLRMGADAVSVHVNLGSEGERHQ 127
Query: 224 FPLVMVGGVLEANRRWDI 241
+ + V EA RW++
Sbjct: 128 --IADMAAVAEACDRWNV 143
>sp|B1VTI8|GRII_STRGG 2-amino-4,5-dihydroxy-6-one-heptanoic acid-7-phosphate synthase
OS=Streptomyces griseus subsp. griseus (strain JCM 4626
/ NBRC 13350) GN=griI PE=3 SV=1
Length = 274
Score = 31.2 bits (69), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 165 YVDPSWA-RIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHS 223
+VDP W R + +V + S A D A ++ E L + AV ++L E +H
Sbjct: 68 HVDPEWFTRTSLIVHLSASTVHAPDPNAKYLVSSVEESLRMGADAVSVHVNLGSEGERHQ 127
Query: 224 FPLVMVGGVLEANRRWDI 241
+ + V EA RW++
Sbjct: 128 --IADMAAVAEACDRWNV 143
>sp|A6TQC4|NADE_ALKMQ NH(3)-dependent NAD(+) synthetase OS=Alkaliphilus metalliredigens
(strain QYMF) GN=nadE PE=3 SV=1
Length = 247
Score = 31.2 bits (69), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 17/92 (18%)
Query: 10 WDFETAEESGGREVILGLDGGTTSTVC--------------ICMPVISMSDSLPDPLPVL 55
W E EESG +++G+ GG S V + +P+ S D + D L V
Sbjct: 13 WLREQVEESGTTGLVVGISGGIDSAVVANLIYRAFPNQSLGVILPIRSHQDDIDDGLAV- 71
Query: 56 ARAAAGCSNHNSVGEDAARETIEKVMADALLK 87
A A H +V D E + +AL K
Sbjct: 72 --AIACGIKHTTVNLDNEHENVLSKAINALQK 101
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,042,975
Number of Sequences: 539616
Number of extensions: 4220490
Number of successful extensions: 12232
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 12225
Number of HSP's gapped (non-prelim): 11
length of query: 281
length of database: 191,569,459
effective HSP length: 116
effective length of query: 165
effective length of database: 128,974,003
effective search space: 21280710495
effective search space used: 21280710495
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)