Query 023529
Match_columns 281
No_of_seqs 121 out of 1289
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 04:44:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023529.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023529hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2971 Predicted N-acetylgluc 100.0 9.5E-29 2E-33 219.3 25.0 233 19-279 2-295 (301)
2 KOG1794 N-Acetylglucosamine ki 100.0 5.4E-29 1.2E-33 217.6 22.8 246 20-277 1-318 (336)
3 PF01869 BcrAD_BadFG: BadF/Bad 99.9 1.6E-25 3.4E-30 200.8 16.3 211 25-273 1-271 (271)
4 TIGR00744 ROK_glcA_fam ROK fam 99.9 1.1E-21 2.4E-26 179.5 18.7 223 25-278 1-313 (318)
5 PRK13310 N-acetyl-D-glucosamin 99.8 9.3E-20 2E-24 165.9 19.2 215 23-275 1-302 (303)
6 COG1940 NagC Transcriptional r 99.8 7.3E-20 1.6E-24 167.3 17.9 233 19-278 3-310 (314)
7 PRK09557 fructokinase; Reviewe 99.8 2.2E-19 4.8E-24 163.3 16.5 213 23-273 1-299 (301)
8 PRK09698 D-allose kinase; Prov 99.8 8.1E-19 1.8E-23 159.6 18.9 218 19-278 1-299 (302)
9 PRK05082 N-acetylmannosamine k 99.8 1.5E-18 3.3E-23 157.0 17.8 216 24-275 3-288 (291)
10 PRK00292 glk glucokinase; Prov 99.7 2.7E-17 5.9E-22 150.7 13.3 88 177-274 215-314 (316)
11 PRK14101 bifunctional glucokin 99.7 2.6E-16 5.6E-21 156.9 10.9 95 177-279 231-334 (638)
12 PRK12408 glucokinase; Provisio 99.7 1.2E-15 2.5E-20 141.2 12.9 90 177-276 233-334 (336)
13 PRK13311 N-acetyl-D-glucosamin 99.5 1.3E-13 2.8E-18 122.8 13.5 165 23-214 1-245 (256)
14 TIGR00749 glk glucokinase, pro 99.4 3.1E-13 6.6E-18 124.0 6.8 84 177-270 221-316 (316)
15 TIGR02707 butyr_kinase butyrat 99.3 5.9E-11 1.3E-15 110.2 15.6 68 176-254 253-322 (351)
16 TIGR03192 benz_CoA_bzdQ benzoy 99.2 2.5E-09 5.5E-14 96.2 18.6 225 22-279 32-292 (293)
17 TIGR00241 CoA_E_activ CoA-subs 99.1 9.2E-10 2E-14 97.6 13.7 209 23-271 1-247 (248)
18 PTZ00288 glucokinase 1; Provis 99.1 7.2E-10 1.6E-14 104.5 13.6 94 177-279 285-394 (405)
19 PRK03011 butyrate kinase; Prov 99.1 2.2E-09 4.7E-14 100.0 13.8 86 176-273 255-345 (358)
20 PRK00976 hypothetical protein; 99.0 2.3E-09 5E-14 97.5 10.5 90 177-280 226-316 (326)
21 PF02685 Glucokinase: Glucokin 98.9 3.7E-08 8E-13 90.3 14.1 91 176-275 214-315 (316)
22 TIGR02261 benz_CoA_red_D benzo 98.9 2.2E-08 4.8E-13 88.9 12.1 222 23-273 2-262 (262)
23 TIGR03286 methan_mark_15 putat 98.9 6.6E-08 1.4E-12 90.4 15.1 218 22-274 144-402 (404)
24 COG1924 Activator of 2-hydroxy 98.8 2.3E-07 4.9E-12 85.2 16.5 217 22-277 135-392 (396)
25 TIGR02259 benz_CoA_red_A benzo 98.8 1.4E-07 3E-12 87.7 13.7 119 144-273 306-432 (432)
26 PLN02914 hexokinase 98.5 6.5E-05 1.4E-09 72.6 24.2 84 189-274 395-485 (490)
27 PRK00047 glpK glycerol kinase; 98.4 1.2E-06 2.6E-11 85.3 9.2 77 20-105 3-85 (498)
28 COG0837 Glk Glucokinase [Carbo 98.3 4.1E-05 9E-10 68.6 17.0 91 178-275 220-319 (320)
29 PF00370 FGGY_N: FGGY family o 98.3 2.6E-06 5.7E-11 75.0 8.8 74 23-105 1-80 (245)
30 PTZ00107 hexokinase; Provision 98.3 0.00031 6.8E-09 67.6 23.4 80 190-275 376-459 (464)
31 PRK10939 autoinducer-2 (AI-2) 98.2 5.1E-06 1.1E-10 81.4 9.7 76 20-104 1-84 (520)
32 TIGR01311 glycerol_kin glycero 98.2 5E-06 1.1E-10 80.9 9.1 75 22-105 1-81 (493)
33 smart00732 YqgFc Likely ribonu 98.2 4.4E-06 9.4E-11 63.1 6.4 63 23-107 2-64 (99)
34 PRK04123 ribulokinase; Provisi 98.2 6.4E-06 1.4E-10 81.1 9.2 77 20-104 1-89 (548)
35 PLN02405 hexokinase 98.2 0.00015 3.3E-09 70.2 18.4 85 190-276 398-489 (497)
36 COG1070 XylB Sugar (pentulose 98.2 9.6E-06 2.1E-10 79.1 9.6 77 20-105 2-85 (502)
37 PLN02362 hexokinase 98.2 0.00031 6.7E-09 68.3 19.7 84 190-275 397-497 (509)
38 PLN02596 hexokinase-like 98.1 0.00079 1.7E-08 65.2 22.2 80 190-274 398-482 (490)
39 TIGR01315 5C_CHO_kinase FGGY-f 98.1 1E-05 2.2E-10 79.6 9.0 72 23-103 1-78 (541)
40 PF00480 ROK: ROK family; Int 98.1 4.9E-06 1.1E-10 69.6 5.4 66 26-109 1-66 (179)
41 PTZ00294 glycerol kinase-like 98.1 1.8E-05 3.9E-10 77.2 9.3 75 22-105 2-84 (504)
42 COG1069 AraB Ribulose kinase [ 98.0 1.5E-05 3.2E-10 76.6 7.4 76 20-103 1-82 (544)
43 TIGR01234 L-ribulokinase L-rib 98.0 2.3E-05 5E-10 77.1 8.9 73 23-104 2-92 (536)
44 TIGR01314 gntK_FGGY gluconate 98.0 2.5E-05 5.4E-10 76.2 9.0 73 23-105 1-79 (505)
45 TIGR01312 XylB D-xylulose kina 98.0 1.6E-05 3.4E-10 76.9 7.5 73 25-106 1-81 (481)
46 PLN02295 glycerol kinase 98.0 3E-05 6.5E-10 75.8 8.8 73 23-104 1-83 (512)
47 PRK13317 pantothenate kinase; 97.9 0.00071 1.5E-08 61.1 15.3 75 189-276 197-275 (277)
48 PRK10331 L-fuculokinase; Provi 97.8 8.6E-05 1.9E-09 71.8 9.4 72 22-104 2-81 (470)
49 COG0554 GlpK Glycerol kinase [ 97.8 5.2E-05 1.1E-09 71.9 7.5 72 21-101 4-81 (499)
50 TIGR02628 fuculo_kin_coli L-fu 97.8 0.00011 2.3E-09 71.1 9.0 72 22-104 1-80 (465)
51 PRK15027 xylulokinase; Provisi 97.8 0.0001 2.2E-09 71.5 8.6 70 23-103 1-76 (484)
52 PRK15080 ethanolamine utilizat 97.7 0.0009 1.9E-08 60.0 13.9 78 17-106 19-99 (267)
53 COG3426 Butyrate kinase [Energ 97.6 0.0019 4.1E-08 57.7 13.5 88 156-252 234-323 (358)
54 PF05378 Hydant_A_N: Hydantoin 97.6 0.00017 3.8E-09 60.7 6.2 65 25-104 2-66 (176)
55 PF00871 Acetate_kinase: Aceto 97.4 0.026 5.7E-07 53.4 19.3 86 156-249 257-345 (388)
56 PRK13318 pantothenate kinase; 97.4 0.00066 1.4E-08 60.6 8.1 63 24-102 2-64 (258)
57 PLN02669 xylulokinase 97.2 0.001 2.2E-08 65.8 8.0 71 21-101 7-96 (556)
58 PRK13321 pantothenate kinase; 97.2 0.0011 2.3E-08 59.2 7.4 65 24-104 2-66 (256)
59 TIGR00555 panK_eukar pantothen 96.9 0.033 7.1E-07 50.3 14.1 72 188-271 204-278 (279)
60 TIGR02529 EutJ ethanolamine ut 96.9 0.012 2.7E-07 51.8 10.7 74 26-111 1-77 (239)
61 COG5026 Hexokinase [Carbohydra 96.8 0.043 9.3E-07 51.9 14.0 80 190-276 376-459 (466)
62 KOG2517 Ribulose kinase and re 96.6 0.0074 1.6E-07 58.5 8.2 77 21-105 5-88 (516)
63 PRK09605 bifunctional UGMP fam 96.4 0.89 1.9E-05 44.8 21.1 73 23-104 2-80 (535)
64 PF03727 Hexokinase_2: Hexokin 96.3 0.013 2.8E-07 51.8 7.3 83 190-274 153-239 (243)
65 PF00349 Hexokinase_1: Hexokin 96.3 0.013 2.9E-07 50.5 6.9 82 19-107 60-144 (206)
66 PF14574 DUF4445: Domain of un 95.9 0.02 4.3E-07 54.5 6.7 78 192-275 300-377 (412)
67 PTZ00340 O-sialoglycoprotein e 95.9 1.5 3.2E-05 40.9 23.4 73 23-105 2-82 (345)
68 COG4020 Uncharacterized protei 95.6 0.11 2.4E-06 45.8 9.5 92 178-281 232-323 (332)
69 PRK12440 acetate kinase; Revie 95.6 0.096 2.1E-06 49.4 9.7 87 156-251 258-347 (397)
70 TIGR00329 gcp_kae1 metallohydr 95.6 1.8 3.9E-05 39.5 18.1 71 25-105 1-81 (305)
71 PLN02666 5-oxoprolinase 95.5 0.052 1.1E-06 58.4 8.6 76 20-105 7-87 (1275)
72 smart00842 FtsA Cell division 95.5 0.087 1.9E-06 44.5 8.4 73 24-106 1-78 (187)
73 PRK14878 UGMP family protein; 95.4 2.1 4.7E-05 39.4 21.0 61 180-251 204-267 (323)
74 PRK00180 acetate kinase A/prop 95.3 0.18 3.9E-06 47.8 10.6 88 156-251 260-350 (402)
75 TIGR00016 ackA acetate kinase. 95.2 0.18 4E-06 47.7 10.2 88 156-251 264-354 (404)
76 PRK09604 UGMP family protein; 95.2 2.6 5.7E-05 39.0 21.0 73 23-105 2-84 (332)
77 PRK12379 propionate/acetate ki 94.7 0.29 6.2E-06 46.3 10.1 87 156-251 255-344 (396)
78 PRK07157 acetate kinase; Provi 94.4 0.33 7.2E-06 45.9 9.7 87 156-250 257-346 (400)
79 PRK12397 propionate kinase; Re 94.4 0.34 7.3E-06 45.9 9.7 87 156-251 259-348 (404)
80 COG0145 HyuA N-methylhydantoin 94.3 0.14 3E-06 51.8 7.5 67 22-105 2-68 (674)
81 TIGR02627 rhamnulo_kin rhamnul 94.0 0.04 8.8E-07 53.1 3.0 67 25-104 1-77 (454)
82 PRK09472 ftsA cell division pr 93.8 0.46 1E-05 45.4 9.7 76 22-105 8-86 (420)
83 PRK07058 acetate kinase; Provi 93.5 0.46 9.9E-06 44.9 8.8 84 156-251 259-345 (396)
84 TIGR01174 ftsA cell division p 93.4 0.45 9.8E-06 44.5 8.9 72 24-105 2-78 (371)
85 COG0282 ackA Acetate kinase [E 93.4 0.8 1.7E-05 42.9 10.0 93 148-251 251-346 (396)
86 KOG2707 Predicted metalloprote 93.3 4.7 0.0001 37.5 14.6 69 24-102 34-111 (405)
87 KOG1369 Hexokinase [Carbohydra 92.4 0.62 1.3E-05 45.0 8.2 80 190-274 383-465 (474)
88 COG0533 QRI7 Metal-dependent p 91.9 11 0.00023 35.1 19.2 51 190-251 237-287 (342)
89 PF13941 MutL: MutL protein 91.3 0.68 1.5E-05 44.7 7.2 57 24-90 2-58 (457)
90 PF02782 FGGY_C: FGGY family o 91.2 1.1 2.4E-05 37.6 7.7 73 190-274 123-195 (198)
91 PF07318 DUF1464: Protein of u 90.8 1.4 3E-05 40.9 8.4 72 194-276 239-316 (343)
92 COG0849 ftsA Cell division ATP 89.9 2.4 5.1E-05 40.6 9.4 73 23-105 7-84 (418)
93 TIGR03281 methan_mark_12 putat 89.6 2.1 4.5E-05 39.1 8.3 89 178-280 226-316 (326)
94 TIGR03725 bact_YeaZ universal 89.5 1.5 3.3E-05 37.4 7.3 66 24-107 1-66 (202)
95 TIGR00143 hypF [NiFe] hydrogen 86.8 3.9 8.5E-05 41.9 9.3 63 178-251 619-684 (711)
96 PRK13324 pantothenate kinase; 86.8 2.5 5.5E-05 37.7 7.1 67 24-105 2-68 (258)
97 PF14450 FtsA: Cell division p 86.0 2.6 5.7E-05 32.8 6.0 17 24-40 1-17 (120)
98 TIGR01175 pilM type IV pilus a 85.5 3.1 6.8E-05 38.3 7.3 73 22-105 3-78 (348)
99 TIGR03123 one_C_unchar_1 proba 85.0 1.4 3E-05 40.6 4.6 61 25-104 1-61 (318)
100 PRK13320 pantothenate kinase; 84.8 4.6 0.0001 35.7 7.7 59 23-107 3-61 (244)
101 TIGR03723 bact_gcp putative gl 83.7 5.7 0.00012 36.4 8.1 71 24-104 1-81 (314)
102 TIGR03722 arch_KAE1 universal 83.0 6.2 0.00014 36.3 8.1 72 25-105 1-78 (322)
103 COG3894 Uncharacterized metal- 82.5 4.5 9.7E-05 39.4 6.9 67 20-96 162-249 (614)
104 PRK13331 pantothenate kinase; 82.4 6.3 0.00014 35.1 7.5 61 22-105 7-67 (251)
105 PRK13326 pantothenate kinase; 82.1 7.3 0.00016 34.9 7.9 63 21-105 5-67 (262)
106 TIGR03723 bact_gcp putative gl 81.4 6.5 0.00014 36.1 7.5 52 190-252 235-286 (314)
107 TIGR00671 baf pantothenate kin 80.5 7.3 0.00016 34.4 7.3 47 24-82 1-47 (243)
108 TIGR01314 gntK_FGGY gluconate 79.8 8.8 0.00019 37.5 8.3 76 190-277 375-450 (505)
109 COG1214 Inactive homolog of me 78.9 5.8 0.00013 34.5 6.0 69 23-107 2-70 (220)
110 COG5146 PanK Pantothenate kina 78.7 48 0.001 29.5 14.9 75 189-273 252-330 (342)
111 COG4972 PilM Tfp pilus assembl 77.8 5.2 0.00011 36.9 5.5 71 23-105 11-85 (354)
112 PTZ00294 glycerol kinase-like 76.7 12 0.00026 36.6 8.2 75 190-276 380-454 (504)
113 COG2441 Predicted butyrate kin 76.3 8.3 0.00018 34.9 6.2 83 179-274 240-331 (374)
114 TIGR01312 XylB D-xylulose kina 74.5 17 0.00036 35.0 8.5 76 190-277 364-439 (481)
115 PRK00047 glpK glycerol kinase; 73.1 16 0.00034 35.6 8.0 75 190-276 377-451 (498)
116 PTZ00186 heat shock 70 kDa pre 73.0 3.6 7.9E-05 41.7 3.6 48 223-275 354-401 (657)
117 PRK00039 ruvC Holliday junctio 72.2 27 0.00058 28.9 8.1 56 23-89 3-61 (164)
118 PF04312 DUF460: Protein of un 72.2 18 0.00039 29.1 6.6 41 11-61 21-61 (138)
119 COG3734 DgoK 2-keto-3-deoxy-ga 70.9 15 0.00033 33.3 6.5 32 22-62 5-36 (306)
120 PRK11678 putative chaperone; P 70.6 25 0.00055 34.0 8.7 48 223-277 400-449 (450)
121 PLN02669 xylulokinase 70.1 18 0.00038 36.0 7.6 73 190-276 421-493 (556)
122 PRK00109 Holliday junction res 70.0 19 0.00041 28.9 6.5 20 22-41 4-23 (138)
123 TIGR01311 glycerol_kin glycero 69.9 20 0.00044 34.8 7.9 75 190-276 373-447 (493)
124 TIGR01319 glmL_fam conserved h 69.7 14 0.00031 35.7 6.6 52 27-90 1-53 (463)
125 PRK10331 L-fuculokinase; Provi 69.7 20 0.00044 34.6 7.9 74 190-275 363-436 (470)
126 PRK10939 autoinducer-2 (AI-2) 69.4 25 0.00053 34.5 8.5 75 190-276 383-457 (520)
127 KOG1369 Hexokinase [Carbohydra 68.0 16 0.00035 35.5 6.6 63 19-91 83-151 (474)
128 COG0816 Predicted endonuclease 67.5 13 0.00029 30.0 5.1 61 22-104 2-63 (141)
129 TIGR02628 fuculo_kin_coli L-fu 67.5 23 0.0005 34.1 7.8 75 190-276 367-441 (465)
130 COG1548 Predicted transcriptio 65.3 12 0.00027 33.5 4.8 26 190-215 254-279 (330)
131 cd00529 RuvC_resolvase Hollida 65.2 33 0.00072 27.8 7.2 56 24-89 2-59 (154)
132 COG4820 EutJ Ethanolamine util 64.8 28 0.00062 30.1 6.7 62 21-92 28-93 (277)
133 PF02075 RuvC: Crossover junct 63.4 22 0.00048 28.8 5.8 56 24-90 1-59 (149)
134 PHA03033 hypothetical protein; 63.3 2.4 5.1E-05 33.4 -0.0 27 3-29 4-30 (142)
135 PF03652 UPF0081: Uncharacteri 63.3 41 0.00089 26.8 7.2 19 23-41 2-20 (135)
136 PF00814 Peptidase_M22: Glycop 63.1 22 0.00048 31.7 6.3 53 188-251 195-247 (268)
137 PF01548 DEDD_Tnp_IS110: Trans 62.2 17 0.00037 28.7 4.9 29 24-61 1-29 (144)
138 TIGR00904 mreB cell shape dete 61.3 31 0.00067 31.6 7.1 78 191-275 248-327 (333)
139 CHL00094 dnaK heat shock prote 61.2 7 0.00015 39.3 2.9 48 223-275 329-376 (621)
140 PRK13410 molecular chaperone D 60.9 8 0.00017 39.4 3.3 48 223-275 329-376 (668)
141 TIGR01234 L-ribulokinase L-rib 60.7 39 0.00085 33.2 8.1 74 194-276 410-484 (536)
142 PF02543 CmcH_NodU: Carbamoylt 60.5 39 0.00084 31.7 7.6 69 192-278 143-216 (360)
143 PRK13930 rod shape-determining 60.4 20 0.00042 32.8 5.6 76 193-275 251-328 (335)
144 PRK13928 rod shape-determining 60.0 25 0.00055 32.2 6.2 76 193-275 246-323 (336)
145 PRK04123 ribulokinase; Provisi 59.5 38 0.00082 33.4 7.7 73 194-275 413-486 (548)
146 PRK15027 xylulokinase; Provisi 58.7 45 0.00098 32.3 8.0 74 190-276 361-435 (484)
147 PRK13927 rod shape-determining 58.6 24 0.00052 32.2 5.8 76 193-275 247-324 (334)
148 TIGR01129 secD protein-export 58.6 32 0.00069 32.7 6.7 73 25-110 1-79 (397)
149 PRK13411 molecular chaperone D 58.4 9.2 0.0002 38.8 3.2 49 223-275 328-376 (653)
150 PF01968 Hydantoinase_A: Hydan 58.0 8.5 0.00019 34.9 2.7 53 189-250 211-263 (290)
151 COG1521 Pantothenate kinase ty 57.9 30 0.00065 30.8 6.0 63 24-104 2-64 (251)
152 PRK00290 dnaK molecular chaper 57.0 9.3 0.0002 38.5 3.0 48 223-275 327-374 (627)
153 PF07318 DUF1464: Protein of u 56.5 18 0.00039 33.7 4.5 41 26-76 1-41 (343)
154 KOG2708 Predicted metalloprote 56.5 43 0.00093 29.6 6.5 76 23-108 3-85 (336)
155 TIGR03722 arch_KAE1 universal 56.1 43 0.00093 30.7 7.0 52 189-251 217-268 (322)
156 COG1070 XylB Sugar (pentulose 55.7 53 0.0011 32.1 8.0 74 189-274 374-447 (502)
157 PLN02295 glycerol kinase 54.4 48 0.001 32.4 7.5 78 190-274 381-458 (512)
158 PF11104 PilM_2: Type IV pilus 54.3 20 0.00043 33.1 4.5 69 26-105 1-72 (340)
159 cd00012 ACTIN Actin; An ubiqui 53.2 23 0.0005 32.9 4.8 47 224-273 291-345 (371)
160 TIGR03123 one_C_unchar_1 proba 53.1 14 0.0003 34.1 3.2 26 189-214 252-277 (318)
161 PF07736 CM_1: Chorismate muta 51.1 35 0.00076 26.7 4.6 37 68-104 13-49 (118)
162 TIGR00228 ruvC crossover junct 50.9 63 0.0014 26.6 6.4 54 24-89 1-57 (156)
163 PF00022 Actin: Actin; InterP 50.4 67 0.0015 29.9 7.5 47 224-273 312-365 (393)
164 PF03630 Fumble: Fumble ; Int 50.4 1.1E+02 0.0024 28.5 8.7 75 188-272 261-339 (341)
165 COG1069 AraB Ribulose kinase [ 49.7 49 0.0011 32.6 6.4 73 193-274 405-477 (544)
166 TIGR01315 5C_CHO_kinase FGGY-f 49.3 54 0.0012 32.3 6.9 73 194-275 418-490 (541)
167 TIGR02627 rhamnulo_kin rhamnul 49.2 63 0.0014 31.0 7.2 74 190-276 361-434 (454)
168 PRK10640 rhaB rhamnulokinase; 47.9 68 0.0015 31.1 7.3 73 190-276 349-422 (471)
169 PF03309 Pan_kinase: Type III 47.4 58 0.0013 27.7 6.1 17 24-40 1-17 (206)
170 PF03702 UPF0075: Uncharacteri 47.0 1.5E+02 0.0032 27.9 9.1 76 191-279 259-341 (364)
171 TIGR02350 prok_dnaK chaperone 46.9 16 0.00035 36.5 2.9 48 223-275 325-372 (595)
172 PRK05183 hscA chaperone protei 46.8 17 0.00037 36.6 3.0 48 223-275 329-376 (616)
173 PTZ00452 actin; Provisional 46.5 27 0.00059 32.8 4.1 46 225-273 296-347 (375)
174 PRK11678 putative chaperone; P 46.4 16 0.00035 35.3 2.7 17 24-40 2-18 (450)
175 PF06277 EutA: Ethanolamine ut 46.2 34 0.00074 33.3 4.7 82 23-105 4-93 (473)
176 PF00012 HSP70: Hsp70 protein; 45.9 16 0.00034 36.2 2.6 46 223-275 329-376 (602)
177 PF00012 HSP70: Hsp70 protein; 44.2 20 0.00043 35.5 3.0 15 95-109 135-149 (602)
178 COG0554 GlpK Glycerol kinase [ 43.6 1.6E+02 0.0034 28.9 8.7 71 190-274 376-448 (499)
179 PRK10719 eutA reactivating fac 43.0 53 0.0011 32.0 5.5 89 184-273 207-320 (475)
180 PTZ00186 heat shock 70 kDa pre 42.7 48 0.001 33.7 5.5 30 11-40 16-45 (657)
181 PRK01433 hscA chaperone protei 42.2 52 0.0011 33.1 5.6 48 223-275 309-356 (595)
182 TIGR00250 RNAse_H_YqgF RNAse H 42.2 31 0.00067 27.3 3.3 17 25-41 1-17 (130)
183 PF05035 DGOK: 2-keto-3-deoxy- 42.1 13 0.00028 33.8 1.2 63 28-105 1-63 (287)
184 COG0068 HypF Hydrogenase matur 41.5 68 0.0015 32.8 6.1 52 190-252 669-720 (750)
185 TIGR01796 CM_mono_aroH monofun 41.4 49 0.0011 25.9 4.1 37 68-104 13-49 (117)
186 COG0145 HyuA N-methylhydantoin 41.4 26 0.00055 35.8 3.3 17 24-40 280-296 (674)
187 TIGR01991 HscA Fe-S protein as 40.7 1.1E+02 0.0023 30.8 7.6 49 223-276 313-361 (599)
188 cd02185 AroH Chorismate mutase 40.6 52 0.0011 25.7 4.1 37 68-104 13-49 (117)
189 PF06406 StbA: StbA protein; 39.5 43 0.00093 30.6 4.2 20 21-40 163-182 (318)
190 COG0443 DnaK Molecular chapero 38.9 26 0.00057 35.0 2.9 48 222-276 309-358 (579)
191 PRK05183 hscA chaperone protei 38.7 1E+02 0.0023 31.0 7.2 20 21-40 18-37 (616)
192 PRK13411 molecular chaperone D 37.3 51 0.0011 33.5 4.7 19 22-40 2-20 (653)
193 PRK01433 hscA chaperone protei 36.7 33 0.00071 34.5 3.2 19 22-40 19-37 (595)
194 PRK00290 dnaK molecular chaper 36.3 1.3E+02 0.0027 30.4 7.3 19 22-40 2-20 (627)
195 CHL00094 dnaK heat shock prote 36.0 96 0.0021 31.3 6.4 19 22-40 2-20 (621)
196 PRK13929 rod-share determining 35.8 78 0.0017 29.1 5.4 43 225-273 281-324 (335)
197 KOG2531 Sugar (pentulose and h 35.3 1.1E+02 0.0024 29.8 6.2 67 23-98 10-93 (545)
198 COG2441 Predicted butyrate kin 35.2 60 0.0013 29.6 4.2 66 25-108 1-66 (374)
199 TIGR03706 exo_poly_only exopol 34.7 1.2E+02 0.0026 27.4 6.3 18 24-41 2-19 (300)
200 TIGR03739 PRTRC_D PRTRC system 34.3 59 0.0013 29.7 4.3 20 21-40 166-185 (320)
201 TIGR02350 prok_dnaK chaperone 34.2 95 0.0021 31.0 6.1 18 23-40 1-18 (595)
202 PRK10854 exopolyphosphatase; P 32.9 1.9E+02 0.0041 28.4 7.8 21 21-41 10-30 (513)
203 KOG2531 Sugar (pentulose and h 32.8 1.5E+02 0.0032 28.9 6.6 75 188-275 415-489 (545)
204 PTZ00281 actin; Provisional 31.5 45 0.00097 31.3 3.0 46 225-273 297-348 (376)
205 KOG2517 Ribulose kinase and re 31.4 1.8E+02 0.0038 28.8 7.1 68 197-274 391-460 (516)
206 PRK10719 eutA reactivating fac 30.6 26 0.00057 34.0 1.3 31 21-61 145-175 (475)
207 PRK13410 molecular chaperone D 30.5 1.2E+02 0.0027 30.9 6.2 19 22-40 2-20 (668)
208 PRK00976 hypothetical protein; 30.2 1.5E+02 0.0032 27.6 6.0 18 23-40 2-19 (326)
209 PLN02920 pantothenate kinase 1 30.0 3.1E+02 0.0068 26.1 8.3 75 188-272 271-349 (398)
210 KOG0104 Molecular chaperones G 30.0 99 0.0021 32.0 5.2 79 190-279 339-417 (902)
211 PTZ00009 heat shock 70 kDa pro 29.2 84 0.0018 31.9 4.8 49 223-275 333-381 (653)
212 PRK11031 guanosine pentaphosph 28.8 2.6E+02 0.0056 27.4 7.9 21 21-41 5-25 (496)
213 COG2183 Tex Transcriptional ac 28.0 1.5E+02 0.0033 30.7 6.2 70 21-107 329-399 (780)
214 smart00268 ACTIN Actin. ACTIN 28.0 69 0.0015 29.6 3.7 61 202-273 272-345 (373)
215 PLN03184 chloroplast Hsp70; Pr 27.6 2.2E+02 0.0047 29.2 7.4 48 223-275 366-413 (673)
216 PF14639 YqgF: Holliday-juncti 27.1 3.4E+02 0.0074 22.0 8.0 30 22-60 5-38 (150)
217 PF00814 Peptidase_M22: Glycop 26.1 85 0.0018 28.0 3.8 34 73-107 29-62 (268)
218 PF06723 MreB_Mbl: MreB/Mbl pr 26.0 1.9E+02 0.0042 26.7 6.2 43 225-273 276-319 (326)
219 PTZ00280 Actin-related protein 26.0 1.1E+02 0.0024 29.0 4.7 26 225-253 315-340 (414)
220 PRK13322 pantothenate kinase; 25.5 1.5E+02 0.0033 26.1 5.2 17 24-40 2-18 (246)
221 PTZ00466 actin-like protein; P 25.1 57 0.0012 30.7 2.5 47 224-273 300-352 (380)
222 PF04848 Pox_A22: Poxvirus A22 25.1 2.8E+02 0.006 22.5 6.2 19 23-41 2-20 (143)
223 PRK15080 ethanolamine utilizat 25.0 1.8E+02 0.004 25.7 5.7 45 223-272 222-266 (267)
224 PTZ00400 DnaK-type molecular c 25.0 1.6E+02 0.0035 30.0 5.9 48 223-275 368-415 (663)
225 PF08735 DUF1786: Putative pyr 24.9 2.4E+02 0.0053 25.1 6.3 47 22-81 167-213 (254)
226 PF14639 YqgF: Holliday-juncti 24.5 1.5E+02 0.0032 24.1 4.6 36 206-252 55-90 (150)
227 TIGR00904 mreB cell shape dete 24.2 59 0.0013 29.7 2.4 15 25-39 5-19 (333)
228 PRK09585 anmK anhydro-N-acetyl 23.7 2.6E+02 0.0056 26.4 6.6 29 75-105 71-99 (365)
229 PRK09472 ftsA cell division pr 23.6 3.3E+02 0.0071 25.9 7.5 51 222-275 328-388 (420)
230 PRK11031 guanosine pentaphosph 23.3 2.5E+02 0.0055 27.5 6.7 29 23-61 133-161 (496)
231 TIGR03706 exo_poly_only exopol 23.3 2.7E+02 0.0058 25.1 6.5 28 24-61 127-154 (300)
232 COG4012 Uncharacterized protei 22.5 3E+02 0.0065 25.0 6.3 50 23-85 228-277 (342)
233 COG0817 RuvC Holliday junction 22.5 2.2E+02 0.0048 23.5 5.2 54 25-89 1-57 (160)
234 PRK15128 23S rRNA m(5)C1962 me 22.0 3.7E+02 0.008 25.5 7.4 71 2-82 13-88 (396)
235 KOG0679 Actin-related protein 21.2 2.5E+02 0.0053 26.8 5.7 46 225-273 344-397 (426)
236 PTZ00004 actin-2; Provisional 21.2 59 0.0013 30.5 1.8 46 225-273 299-350 (378)
237 PF11104 PilM_2: Type IV pilus 21.1 3.6E+02 0.0079 24.6 7.1 51 193-251 250-300 (340)
238 cd08166 MPP_Cdc1_like_1 unchar 20.8 2.3E+02 0.005 24.2 5.2 43 200-251 28-70 (195)
239 PRK13917 plasmid segregation p 20.6 4.4E+02 0.0096 24.3 7.5 69 189-273 265-334 (344)
240 KOG1385 Nucleoside phosphatase 20.5 2.4E+02 0.0051 27.2 5.5 82 20-105 65-152 (453)
241 KOG0679 Actin-related protein 20.4 1.4E+02 0.003 28.4 3.9 48 21-82 153-200 (426)
242 PF12645 HTH_16: Helix-turn-he 20.2 1.1E+02 0.0023 21.2 2.5 25 180-204 3-28 (65)
243 KOG0100 Molecular chaperones G 20.2 1E+02 0.0022 29.7 3.0 21 20-40 34-54 (663)
No 1
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=9.5e-29 Score=219.33 Aligned_cols=233 Identities=28% Similarity=0.397 Sum_probs=197.1
Q ss_pred CCCcEEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccccee
Q 023529 19 GGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAV 98 (281)
Q Consensus 19 ~~~~~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~I 98 (281)
.++.|+||||+|||+|++++.|. +|+++.+.+.++.|....+.+.++.+|.++|.+++.++|.++++|-.+
T Consensus 2 ~~~~~~lGVDGGGTkt~a~l~~~---------~g~vlg~g~sGpAN~~~~~~e~A~~ni~~ai~~A~~~aG~~~~~i~~~ 72 (301)
T COG2971 2 EPMPYFLGVDGGGTKTRAVLADE---------DGNVLGRGKSGPANIQLVGKEEAVRNIKDAIREALDEAGLKPDEIAAI 72 (301)
T ss_pred CCccEEEEEccCCcceEEEEEcC---------CCcEEEEeccCCceecccchHHHHHHHHHHHHHHHHhcCCCHHHhCce
Confidence 35789999999999999999996 999999999999998766669999999999999999999999998887
Q ss_pred EEcccCCCChh--hHHHHHHhh----------------------------------------------------------
Q 023529 99 CLAVSGVNHPT--DQQRILNWL---------------------------------------------------------- 118 (281)
Q Consensus 99 gig~~G~~~~~--~~~~l~~~~---------------------------------------------------------- 118 (281)
+.|+++.+... ....+...+
T Consensus 73 ~agla~ag~~~~~~~~~~~~~l~~a~~v~v~~Dg~iAl~ga~~~~~Gii~i~GTGSi~~~~~gg~~~r~GG~Gf~IgDeg 152 (301)
T COG2971 73 VAGLALAGANVEEAREELERLLPFAGKVDVENDGLIALRGALGDDDGIIVIAGTGSIGYGRKGGRRERVGGWGFPIGDEG 152 (301)
T ss_pred eeeeeccCcchhHHHHHHHHhcCccceEEEecChHHHHhhccCCCCCEEEEecCCeEEEEEeCCeeEEecCcCccccccc
Confidence 77777665432 222111100
Q ss_pred cHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHhcCCCChhhHHHHhccCCC-hHHhhcchHHHHHHHHhCCHHHHHHHHH
Q 023529 119 SGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPS-WARIAALVPVVVSCAEAGDEVANKILQD 197 (281)
Q Consensus 119 sg~~iG~~~l~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~-~~~~a~~a~~v~~~A~~GD~~A~~il~~ 197 (281)
||+|||+++++++++.+||+.+.+++...++.+|+. +++.++.+.|+... ...++++++.|+++|++||+.|++|+++
T Consensus 153 Sga~ig~~~L~~~lra~DG~~~~t~L~d~v~~~f~~-d~edlv~~~y~a~~~~~~ia~lap~V~~~A~~GD~~A~~Il~~ 231 (301)
T COG2971 153 SGAWIGREALQEALRAFDGRREATPLTDAVMAEFNL-DPEDLVAFIYKAGPGDKKIAALAPAVFEAARKGDPVAIRILKE 231 (301)
T ss_pred hHHHHHHHHHHHHHHHhcCCccCChHHHHHHHHhCC-CHHHHHHHHHhcCCchHHHHHhhHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999999986 89999999998753 3459999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeCCCCChhHHHHHHHHhhh
Q 023529 198 SVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGAALLAWNSF 277 (281)
Q Consensus 198 aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~~~~~~~~GAa~la~~~~ 277 (281)
++.++...+..+. .++ .+.++.+-||++...++ +.+.+++.+.. ++..+++.||..+|...+
T Consensus 232 aa~~i~~~~~~l~-~~~-------g~~~l~l~GG~~~~~~~--~~~~~~~~l~~--------~~~~D~~~GA~~~A~~~~ 293 (301)
T COG2971 232 AAAYIATLLEALS-IFN-------GSEKLSLLGGLAPSYPY--YLSLFRRALLV--------PPIGDALSGAVLLALGRF 293 (301)
T ss_pred HHHHHHHHHHHHh-ccc-------CCceEEEeccccccchh--hHHHHHHHhcC--------CccccHHHHHHHHHHHhh
Confidence 9999988887775 333 38899999999999874 67777776654 347789999999998776
Q ss_pred hc
Q 023529 278 MN 279 (281)
Q Consensus 278 ~~ 279 (281)
..
T Consensus 294 ~~ 295 (301)
T COG2971 294 GE 295 (301)
T ss_pred hh
Confidence 54
No 2
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=5.4e-29 Score=217.59 Aligned_cols=246 Identities=26% Similarity=0.395 Sum_probs=217.6
Q ss_pred CCcEEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCccc-ccee
Q 023529 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSA-VRAV 98 (281)
Q Consensus 20 ~~~~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~-i~~I 98 (281)
|+.++.|||+|.|.++++++| ++++++++....++|+...+.+.+.+.|.++|.++..+.|.+.+. ++++
T Consensus 1 ~~~~y~GvEGgaT~s~~Vivd---------~~~~~~~~a~~~~Tnh~~ig~~~~~~rie~~i~~A~~k~g~d~~~~lr~l 71 (336)
T KOG1794|consen 1 LKDFYGGVEGGATCSRLVIVD---------EDGTILGRAVGGGTNHWLIGSTTCASRIEDMIREAKEKAGWDKKGPLRSL 71 (336)
T ss_pred CCceeEeecCCcceeEEEEEC---------CCCCEeeEeeccccccccCCchHHHHHHHHHHHHHHhhcCCCccCcccee
Confidence 467999999999999999999 499999999999999887888999999999999999999999988 8999
Q ss_pred EEcccCCCChhhHHHHHHhh------------------------------------------------------------
Q 023529 99 CLAVSGVNHPTDQQRILNWL------------------------------------------------------------ 118 (281)
Q Consensus 99 gig~~G~~~~~~~~~l~~~~------------------------------------------------------------ 118 (281)
|+|++|.++++....+.+|+
T Consensus 72 gL~lSg~d~e~~~~~lv~~~R~~fps~ae~~~v~sDa~~sl~a~t~g~~~GiVLiaGTgs~crl~~~DGs~~~~ggwg~~ 151 (336)
T KOG1794|consen 72 GLGLSGTDQEDKNRKLVTEFRDKFPSVAENFYVTSDADGSLAAATPGGEGGIVLIAGTGSNCRLVNPDGSEKGAGGWGHM 151 (336)
T ss_pred eeecccCCchhHHHHHHHHHHHhccchhheeeeehhHHHHHhhcCCCCCCcEEEEecCCceeEEECCCCCccCCCCCCCc
Confidence 99999999887655554443
Q ss_pred -----cHHHHHHHHHHHHHHhhcCCCCC----chhHHHHHHhcCCCChhhHHHHhccCCChHHhhcchHHHHHHHHhCCH
Q 023529 119 -----SGYGIAAQALTAVIRAYDGRGPD----TMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDE 189 (281)
Q Consensus 119 -----sg~~iG~~~l~~~~~~~dg~~~~----~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~a~~a~~v~~~A~~GD~ 189 (281)
|+|||++++++.++...||..+. ..+.+.+..++++.++..++.+.|.++++..+|.+++.+.+.|+.|||
T Consensus 152 iGd~GSaywia~~Avq~vfda~dg~e~~~~~i~~v~~tif~~~~l~d~l~ml~~~Ys~f~k~riA~f~~kla~~ae~Gd~ 231 (336)
T KOG1794|consen 152 IGDGGSAYWIARQAVQMVFDAEDGFENMMDKIKDVKQTIFKHFNLRDRLQMLEHLYSDFDKHRIALFTEKLAEHAEIGDP 231 (336)
T ss_pred cCCCcchhhhhhhhhhheeehhcCcccccchHHHHHHHHHHHcCCCCHHHHHHHHHhcchHHHHHHHHHHHHhhhhccCH
Confidence 79999999999888888887554 556678889999999999999999988888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhh--CCCceeeCCCCChhH
Q 023529 190 VANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRD--YPGAVPIRPKVEPAV 267 (281)
Q Consensus 190 ~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~--~p~~~i~~~~~~~~~ 267 (281)
.+.+|+++|+..||+.|.+++..+..++..+ ...+|++-|||+.+++. +.+.|...+... +|.+++..+...+++
T Consensus 232 ~~~~ifr~Ag~~Lg~~V~aVl~~l~~~~k~g-~~l~Iv~vG~V~~Sw~~--l~~Gfl~sls~~~~f~~~~l~~~k~ssAv 308 (336)
T KOG1794|consen 232 LSAEIFRNAGETLGRHVVAVLPQLPPTLKKG-KTLPIVCVGGVFDSWDL--LQEGFLDSLSDTRGFERVELYRPKESSAV 308 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCchhccc-CcceEEEEcchhhHHHH--HHHHHHHHhhcccCccceEEEeecccchH
Confidence 9999999999999999999999998544322 37899999999999994 789999988775 488899999999999
Q ss_pred HHHHHHHhhh
Q 023529 268 GAALLAWNSF 277 (281)
Q Consensus 268 GAa~la~~~~ 277 (281)
||+++|.+..
T Consensus 309 gAA~laa~~~ 318 (336)
T KOG1794|consen 309 GAAILAASLD 318 (336)
T ss_pred HHHHHhhhhc
Confidence 9999997653
No 3
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=99.93 E-value=1.6e-25 Score=200.81 Aligned_cols=211 Identities=36% Similarity=0.592 Sum_probs=170.2
Q ss_pred EEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCccccceeEEcccC
Q 023529 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (281)
Q Consensus 25 iGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~Igig~~G 104 (281)
||||+|||||+++++|. +|+++.+...++.|+...+.+.++++|.+++++++.+.+.+..++..+++|++|
T Consensus 1 lGIDgGgTkt~~vl~d~---------~g~il~~~~~~~~n~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~~~g~aG 71 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDE---------NGNILGRGKGGGANYNSVGFEEAMENIKEAIEEALSQAGLSPDDIAAICIGAAG 71 (271)
T ss_dssp EEEEECSSEEEEEEEET---------TSEEEEEEEES-TTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCEEEEEEEE
T ss_pred CEEeeChheeeeEEEeC---------CCCEEEEEEeCCCCCCCCCcchhhhHHHHHHHHHHHHcCCCccccceeeeeEee
Confidence 79999999999999995 999999999998888656788999999999999999999998889999999999
Q ss_pred CCChhhH-----HHHHH-hh---------------------------------------------------cHHHHHHHH
Q 023529 105 VNHPTDQ-----QRILN-WL---------------------------------------------------SGYGIAAQA 127 (281)
Q Consensus 105 ~~~~~~~-----~~l~~-~~---------------------------------------------------sg~~iG~~~ 127 (281)
+..+... ..+.. +. ||||+|+++
T Consensus 72 ~~~~~~~~~~~~~~~~~~v~~~~Da~~al~~~~~~~giv~I~GTGS~~~~~~~~g~~~r~gG~G~~~gD~GSg~~ig~~~ 151 (271)
T PF01869_consen 72 YGRAGDEQEFQEEIVRSEVIVVNDAAIALYGATAEDGIVVIAGTGSIAYGRDRDGRVIRFGGWGHCLGDEGSGYWIGRRA 151 (271)
T ss_dssp EEETTTTTHHHHHHHHHEEEEEEHHHHHHHHHSTSSEEEEEESSSEEEEEEETTSEEEEEEESCTTTTTTTSHHHHHHHH
T ss_pred ecCcccccchhhcceEEEEEEEHHHHHHhCCCCCCcEEEEEcCCCceEEEEEcCCcEEEeCCCCCCcCCCCcHHHHHHHH
Confidence 8543221 11111 00 999999999
Q ss_pred HHHHHHhhcCCCCCchhHHHHHHhcCCCChhhHHHHhccCCChHHhhcchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Q 023529 128 LTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVK 207 (281)
Q Consensus 128 l~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~a~~a~~v~~~A~~GD~~A~~il~~aa~~l~~~i~ 207 (281)
++.++...|++.+.+. +.. ...+..++.+++.+++++++||+.|.+|+++++++|++.+.
T Consensus 152 L~~~~~~~d~~~~~~~-------------------~~~-~~~~~~~A~fa~~v~~~a~~gd~~a~~Il~~a~~~la~~i~ 211 (271)
T PF01869_consen 152 LRAVLRELDGRAEPTP-------------------YAK-PASNARIAVFAPTVFEAAQQGDEVARDILAEAADELAELIK 211 (271)
T ss_dssp HHHHHHHHTTSSTTSH-------------------HHH-TT-HHHHHCTHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHhcCccccCc-------------------ccC-CCChhheehhhHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 9999999999876555 111 12346788999999999999999999999999999999999
Q ss_pred HHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhCCCc---eeeCCCCChhHHHHHHH
Q 023529 208 AVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGA---VPIRPKVEPAVGAALLA 273 (281)
Q Consensus 208 ~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~---~i~~~~~~~~~GAa~la 273 (281)
.++..++.. +.+|+|.||++.+.+ +.+.|++.|++..+.. .+..|...|++||+++|
T Consensus 212 ~~~~~~~~~------~~~v~l~GGv~~~~~---~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 212 AVLKRLGPE------KEPVVLSGGVFKNSP---LVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHTCTCC------CCSEEEESGGGGCHH---HHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHhcCCC------CCeEEEECCccCchH---HHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 999999832 334999999998865 5677877777765443 44557888999999987
No 4
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=99.88 E-value=1.1e-21 Score=179.53 Aligned_cols=223 Identities=16% Similarity=0.113 Sum_probs=165.5
Q ss_pred EEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCccccceeEEcccC
Q 023529 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (281)
Q Consensus 25 iGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~Igig~~G 104 (281)
+|||+|+|+++++++|+ +|+++.+.+.+.. .+++++++.+.+.+++++++.+.+..++.+||+|+||
T Consensus 1 lgidig~t~~~~~l~d~---------~g~i~~~~~~~~~----~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~pG 67 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDE---------EGNILSKWKVPTD----TTPETIVDAIASAVDSFIQHIAKVGHEIVAIGIGAPG 67 (318)
T ss_pred CEEEeCCCEEEEEEECC---------CCCEEEEEEeCCC----CCHHHHHHHHHHHHHHHHHhcCCCccceEEEEEeccc
Confidence 69999999999999997 8999988877642 2578889999999999999988887889999999999
Q ss_pred CCChhh----------H------HHHHHhh--------------------------------------------------
Q 023529 105 VNHPTD----------Q------QRILNWL-------------------------------------------------- 118 (281)
Q Consensus 105 ~~~~~~----------~------~~l~~~~-------------------------------------------------- 118 (281)
+++++. | +.+++.+
T Consensus 68 ~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~pv~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGiG~giv~~G~~~~ 147 (318)
T TIGR00744 68 PVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLPVVVENDANAAALGEYKKGAGKGARDVICITLGTGLGGGIIINGEIRH 147 (318)
T ss_pred cccCCCCEEEecCCCCCCCCCHHHHHHHHHCCCEEEechHHHHHHHHHHhcccCCCCcEEEEEeCCccEEEEEECCEEee
Confidence 876421 1 1222211
Q ss_pred ----cHHHHHHHHHHHHHHhhcC-CCCCchhHHHHHHhcCCCChhhHHHHhccCCC----hHH-------hhcchHHHHH
Q 023529 119 ----SGYGIAAQALTAVIRAYDG-RGPDTMLTSNILSTLELSSPDELIGWTYVDPS----WAR-------IAALVPVVVS 182 (281)
Q Consensus 119 ----sg~~iG~~~l~~~~~~~dg-~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~----~~~-------~a~~a~~v~~ 182 (281)
++.++| |+...++| ..|.|+- .+|++.+ .|..++.+....... .+. -....+++++
T Consensus 148 G~~g~agEiG-----h~~v~~~g~~~C~cG~-~gclE~~--~s~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 219 (318)
T TIGR00744 148 GHNGVGAEIG-----HIRMVPDGRLLCNCGK-QGCIETY--ASATGLVRYAKRANAKPERAEVLLALGDGDGISAKHVFV 219 (318)
T ss_pred cCCCCCcccC-----ceEeCCCCCcccCCCC-cchHHHH--hCHHHHHHHHHHHhccccccchhhcccccCCCCHHHHHH
Confidence 122334 35555666 5566654 4566666 477777654321100 000 0123588999
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhC-C----Cce
Q 023529 183 CAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDY-P----GAV 257 (281)
Q Consensus 183 ~A~~GD~~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~-p----~~~ 257 (281)
++++||+.|.+++++++++|+.+++++++.|| |+.|||+|++....+ + |.+.+++.++++. | .++
T Consensus 220 ~~~~gD~~a~~i~~~~~~~L~~~i~~~~~~~d--------P~~IvlgG~~~~~~~-~-~~~~i~~~~~~~~~~~~~~~~~ 289 (318)
T TIGR00744 220 AARQGDPVAVDSYREVARWAGAGLADLASLFN--------PSAIVLGGGLSDAGD-L-LLDPIRKSYKRWLFGGARQVAD 289 (318)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCEEEECChhhhCcH-H-HHHHHHHHHHHHhhhcccCCcE
Confidence 99999999999999999999999999999999 999999999998766 3 8999999998764 2 234
Q ss_pred eeC---CCCChhHHHHHHHHhhhh
Q 023529 258 PIR---PKVEPAVGAALLAWNSFM 278 (281)
Q Consensus 258 i~~---~~~~~~~GAa~la~~~~~ 278 (281)
|.. ..+++++||+.++++.+.
T Consensus 290 i~~s~~~~~~~~~Gaa~~~~~~~~ 313 (318)
T TIGR00744 290 IIAAQLGNDAGLVGAADLARTYII 313 (318)
T ss_pred EEEcccCCchhhHHHHHHHHHhcc
Confidence 443 245689999999987764
No 5
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=99.85 E-value=9.3e-20 Score=165.89 Aligned_cols=215 Identities=16% Similarity=0.130 Sum_probs=151.6
Q ss_pred EEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCccccceeEEcc
Q 023529 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (281)
Q Consensus 23 ~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~Igig~ 102 (281)
+++|||+|+|+++++++|+ +|+++.+.+.+.. . .+++++++.+.+.++++..+.+ .+.+|||++
T Consensus 1 ~~lgidig~t~i~~~l~d~---------~g~i~~~~~~~~~-~--~~~~~~~~~i~~~i~~~~~~~~----~~~~igia~ 64 (303)
T PRK13310 1 MYYGFDIGGTKIELGVFNE---------KLELQWEERVPTP-R--DSYDAFLDAVCELVAEADQRFG----CKGSVGIGI 64 (303)
T ss_pred CeEEEEeCCCcEEEEEECC---------CCcEEEEEEecCC-C--cCHHHHHHHHHHHHHHHHhhcC----CcceEEEeC
Confidence 3699999999999999997 8999988877643 2 4678888999888888765433 245899999
Q ss_pred cCCCChhh----------H------HHHHHhh------------------------------------------------
Q 023529 103 SGVNHPTD----------Q------QRILNWL------------------------------------------------ 118 (281)
Q Consensus 103 ~G~~~~~~----------~------~~l~~~~------------------------------------------------ 118 (281)
||+++++. | +.+++.+
T Consensus 65 pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~pV~ieNDa~aaalaE~~~g~~~~~~~~~~l~~gtGiG~giv~~G~l 144 (303)
T PRK13310 65 PGMPETEDGTLYAANVPAASGKPLRADLSARLGRDVRLDNDANCFALSEAWDDEFTQYPLVMGLILGTGVGGGLVFNGKP 144 (303)
T ss_pred CCcccCCCCEEeccCcccccCCcHHHHHHHHHCCCeEEeccHhHHHHHHhhhccccCCCcEEEEEecCceEEEEEECCEE
Confidence 99986431 1 1122211
Q ss_pred ------cHHHHHHHHHHHHHHhhcC----------CCCCchhHHHHHHhcCCCChhhHHHHhccCCChHHhhcchHHHHH
Q 023529 119 ------SGYGIAAQALTAVIRAYDG----------RGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVS 182 (281)
Q Consensus 119 ------sg~~iG~~~l~~~~~~~dg----------~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~a~~a~~v~~ 182 (281)
.+.++|| +...+++ ..|.|+- .+|++.+ .|..++.+.+..... ..+ ..+.+++
T Consensus 145 ~~G~~g~aGEiGH-----~~v~~~~~~~~g~~~~~~~C~CG~-~gclE~~--~S~~al~~~~~~~~~-~~~--~~~~l~~ 213 (303)
T PRK13310 145 ISGRSYITGEFGH-----MRLPVDALTLLGWDAPLRRCGCGQ-KGCIENY--LSGRGFEWLYQHYYG-EPL--QAPEIIA 213 (303)
T ss_pred eeCCCCccccccc-----eeecccccccccccCCCccCCCCC-cchHHHh--hcHHHHHHHHHHhcc-CCC--CHHHHHH
Confidence 1112333 4333332 2444543 4566666 466666654332111 011 2578999
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhC-C---Ccee
Q 023529 183 CAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDY-P---GAVP 258 (281)
Q Consensus 183 ~A~~GD~~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~-p---~~~i 258 (281)
++++||+.|.+++++++++|+.+++++++.|| |+.|||||++.. .+. |.+.+++.++++. | .++|
T Consensus 214 ~~~~gd~~a~~~~~~~~~~la~~l~n~~~~ld--------P~~IvlgG~~~~-~~~--~~~~l~~~~~~~~~~~~~~~~i 282 (303)
T PRK13310 214 LYYQGDEQAVAHVERYLDLLAICLGNILTIVD--------PHLVVLGGGLSN-FDA--IYEQLPKRLPRHLLPVARVPRI 282 (303)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHcC--------CCEEEECCcccC-hHH--HHHHHHHHHHHHhcccccCceE
Confidence 99999999999999999999999999999999 999999999987 452 7799999998764 2 3344
Q ss_pred eC---CCCChhHHHHHHHHh
Q 023529 259 IR---PKVEPAVGAALLAWN 275 (281)
Q Consensus 259 ~~---~~~~~~~GAa~la~~ 275 (281)
.. ..+++++||+.+++.
T Consensus 283 ~~s~~~~~a~~~GAa~~~l~ 302 (303)
T PRK13310 283 EKARHGDAGGVRGAAFLHLT 302 (303)
T ss_pred EEcccCchHHHHhHHHHhhc
Confidence 43 245689999998864
No 6
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=99.84 E-value=7.3e-20 Score=167.34 Aligned_cols=233 Identities=18% Similarity=0.170 Sum_probs=162.7
Q ss_pred CCCcEEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccccee
Q 023529 19 GGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAV 98 (281)
Q Consensus 19 ~~~~~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~I 98 (281)
.++.|++|||+|+|+++++++|+ +|+++.+.+.++... .+.+.+++.|.+.+++++++.+ ...++.+|
T Consensus 3 ~~~~~~lgidIggt~i~~~l~d~---------~g~~l~~~~~~~~~~--~~~~~~~~~i~~~i~~~~~~~~-~~~~~iGI 70 (314)
T COG1940 3 PEAMTVLGIDIGGTKIKVALVDL---------DGEILLRERIPTPTP--DPEEAILEAILALVAELLKQAQ-GRVAIIGI 70 (314)
T ss_pred ccCcEEEEEEecCCEEEEEEECC---------CCcEEEEEEEecCCC--CchhHHHHHHHHHHHHHHHhcC-CcCceEEE
Confidence 35679999999999999999997 999998888775443 3446889999999999999876 33445566
Q ss_pred EEcccCCCChhh----------------HHHHHHhh--------------------------------------------
Q 023529 99 CLAVSGVNHPTD----------------QQRILNWL-------------------------------------------- 118 (281)
Q Consensus 99 gig~~G~~~~~~----------------~~~l~~~~-------------------------------------------- 118 (281)
|++.||..+... .+.|++.+
T Consensus 71 gi~~pg~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~Pv~veNDan~aalaE~~~g~~~~~~~~~~i~~gtGIG~giv~ 150 (314)
T COG1940 71 GIPGPGDVDNGTVIVPAPNLGWWNGVDLAEELEARLGLPVFVENDANAAALAEAWFGAGRGIDDVVYITLGTGIGGGIIV 150 (314)
T ss_pred EeccceeccCCcEEeecCCCCccccccHHHHHHHHHCCCEEEecHHHHHHHHHHHhCCCCCCCCEEEEEEccceeEEEEE
Confidence 555555544321 11222211
Q ss_pred ------cHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHhcCCCChhhHHHHhccCCChHHhhcchHHHHHHHHhCCHHHH
Q 023529 119 ------SGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVAN 192 (281)
Q Consensus 119 ------sg~~iG~~~l~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~a~~a~~v~~~A~~GD~~A~ 192 (281)
+..+.+++ ++|+....++. |.|+.. +|++.+ .|..++..+.++...........+.+++++.+||+.|+
T Consensus 151 ~g~l~~G~~g~age-~Gh~~v~~~g~-c~cG~~-GclE~~--as~~al~~~~~~~~~~~~~~~~~~~i~~~a~~gd~~a~ 225 (314)
T COG1940 151 NGKLLRGANGNAGE-IGHMVVDPDGE-CGCGRR-GCLETY--ASGRAILRRAAEALESEAGELTAKDIFELAAAGDPLAK 225 (314)
T ss_pred CCEEeecCCCcccc-ccceEECCCCc-cCCCCC-CchHHh--ccHHHHHHHHHhhccccccCcCHHHHHHHHHcCCHHHH
Confidence 10111122 44566667776 656654 556666 47888887642211101000236899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEc-CcccCcchhhhHHHHHHHHHhhCCC----ceeeC---C-CC
Q 023529 193 KILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVG-GVLEANRRWDIGREVVKCILRDYPG----AVPIR---P-KV 263 (281)
Q Consensus 193 ~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgG-gv~~~~~~~~l~~~i~~~l~~~~p~----~~i~~---~-~~ 263 (281)
+++++++.+|+.+++++++.|| |+.||++| ++....+ .+.+.+++.+..+... ..+.. . ..
T Consensus 226 ~~~~~~~~~la~~ianl~~~~~--------P~~IvigG~g~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (314)
T COG1940 226 EVIERAADYLARGLANLINLLD--------PEVIVIGGGGVSALGD--LLLPRLRKLLAKYLFPPVLRPRIVEAALGGND 295 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--------CCeEEEECcccccchh--HHHHHHHHHHHHhhcchhcccchhhhhccccc
Confidence 9999999999999999999999 99999999 8887776 3889999888876521 11221 2 46
Q ss_pred ChhHHHHHHHHhhhh
Q 023529 264 EPAVGAALLAWNSFM 278 (281)
Q Consensus 264 ~~~~GAa~la~~~~~ 278 (281)
++++||++++.+...
T Consensus 296 a~~~ga~~~~~~~~~ 310 (314)
T COG1940 296 AGLIGAALLALLLLL 310 (314)
T ss_pred ccchhHHHHHHHhhh
Confidence 789999999976543
No 7
>PRK09557 fructokinase; Reviewed
Probab=99.82 E-value=2.2e-19 Score=163.32 Aligned_cols=213 Identities=16% Similarity=0.081 Sum_probs=150.4
Q ss_pred EEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCccccceeEEcc
Q 023529 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (281)
Q Consensus 23 ~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~Igig~ 102 (281)
++||||+|+|+++++++|+ +|+++.+.+.++. . .+++++++.+.+.++++..+.+ .+.+|||++
T Consensus 1 ~~lgidig~t~~~~~l~d~---------~g~i~~~~~~~~~-~--~~~~~~~~~i~~~i~~~~~~~~----~~~gIgi~~ 64 (301)
T PRK09557 1 MRIGIDLGGTKIEVIALDD---------AGEELFRKRLPTP-R--DDYQQTIEAIATLVDMAEQATG----QRGTVGVGI 64 (301)
T ss_pred CEEEEEECCCcEEEEEECC---------CCCEEEEEEecCC-C--CCHHHHHHHHHHHHHHHHhhcC----CceEEEecC
Confidence 4799999999999999997 8999988887643 2 3678888888888888876432 467999999
Q ss_pred cCCCChhh---------H-------HHHHHhh------------------------------------------------
Q 023529 103 SGVNHPTD---------Q-------QRILNWL------------------------------------------------ 118 (281)
Q Consensus 103 ~G~~~~~~---------~-------~~l~~~~------------------------------------------------ 118 (281)
||+++++. | +.+++.+
T Consensus 65 pG~vd~~~g~i~~~~~~~~~~~~l~~~l~~~~~~pv~~~NDa~aaA~aE~~~g~~~~~~~~~~l~igtGiG~giv~~G~l 144 (301)
T PRK09557 65 PGSISPYTGLVKNANSTWLNGQPLDKDLSARLNREVRLANDANCLAVSEAVDGAAAGKQTVFAVIIGTGCGAGVAINGRV 144 (301)
T ss_pred cccCcCCCCeEEecCCccccCCCHHHHHHHHHCCCEEEccchhHHHHHHHHhcccCCCCcEEEEEEccceEEEEEECCEE
Confidence 99976321 1 1122211
Q ss_pred ------cHHHHHHHHHHHHHHhh---------cCCCCCchhHHHHHHhcCCCChhhHHHHhccCCChHHhhcchHHHHHH
Q 023529 119 ------SGYGIAAQALTAVIRAY---------DGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSC 183 (281)
Q Consensus 119 ------sg~~iG~~~l~~~~~~~---------dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~a~~a~~v~~~ 183 (281)
.+.++|| +...+ +|..|.|+. .+|+|.+ .|..++.+.+..... .. ...+.++++
T Consensus 145 ~~G~~g~aGEiGH-----~~v~~~~~~~~~~~~g~~c~cG~-~GclE~~--~S~~al~~~~~~~~~-~~--~~~~~l~~~ 213 (301)
T PRK09557 145 HIGGNGIAGEWGH-----NPLPWMDEDELRYRNEVPCYCGK-QGCIETF--ISGTGFATDYRRLSG-KA--LKGSEIIRL 213 (301)
T ss_pred EecCCCCCcccCc-----eecccccccccccCCCCcCCCCC-CCEEeEE--EcHHHHHHHHHHhcc-CC--CCHHHHHHH
Confidence 1122333 32221 444455544 3455555 466777665432211 11 125789999
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhC-C---Cceee
Q 023529 184 AEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDY-P---GAVPI 259 (281)
Q Consensus 184 A~~GD~~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~-p---~~~i~ 259 (281)
+++||+.|.+++++++++|+.++.++++.|| |+.|||+|+++.. +. +.+.+++.++++. + .++|+
T Consensus 214 ~~~gd~~a~~~l~~~~~~La~~l~~l~~~ld--------P~~IvlgG~~~~~-~~--~~~~l~~~~~~~~~~~~~~~~i~ 282 (301)
T PRK09557 214 VEEGDPVAELAFRRYEDRLAKSLAHVINILD--------PDVIVLGGGMSNV-DR--LYPTLPALLKQYVFGGECETPVR 282 (301)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCEEEEcCcccch-HH--HHHHHHHHHHHHhcccccCCeEE
Confidence 9999999999999999999999999999999 9999999999875 42 7788999998764 2 33444
Q ss_pred C---CCCChhHHHHHHH
Q 023529 260 R---PKVEPAVGAALLA 273 (281)
Q Consensus 260 ~---~~~~~~~GAa~la 273 (281)
. ..+++++||+++.
T Consensus 283 ~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 283 KALHGDSSGVRGAAWLW 299 (301)
T ss_pred EcccCCchhhhhhhHhh
Confidence 3 2456899999864
No 8
>PRK09698 D-allose kinase; Provisional
Probab=99.82 E-value=8.1e-19 Score=159.60 Aligned_cols=218 Identities=17% Similarity=0.210 Sum_probs=152.4
Q ss_pred CCCcEEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccccee
Q 023529 19 GGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAV 98 (281)
Q Consensus 19 ~~~~~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~I 98 (281)
+|..|++|||+|+|+++++++|+ +|+++.+.+.++... .+++. ++.+.+.+++++++.+ .++.+|
T Consensus 1 ~~~~~~lgidig~t~i~~~l~d~---------~g~i~~~~~~~~~~~--~~~~~-~~~l~~~i~~~~~~~~---~~i~gi 65 (302)
T PRK09698 1 KQKNVVLGIDMGGTHIRFCLVDA---------EGEILHCEKKRTAEV--IAPDL-VSGLGEMIDEYLRRFN---ARCHGI 65 (302)
T ss_pred CCccEEEEEEcCCcEEEEEEEcC---------CCCEEEEEEeCCccc--cchHH-HHHHHHHHHHHHHHcC---CCeeEE
Confidence 47789999999999999999997 999999888775432 34454 8999999999998764 479999
Q ss_pred EEcccCCCChhh-------------H------HHHHHhh-----------------------------------------
Q 023529 99 CLAVSGVNHPTD-------------Q------QRILNWL----------------------------------------- 118 (281)
Q Consensus 99 gig~~G~~~~~~-------------~------~~l~~~~----------------------------------------- 118 (281)
||++||+++++. + +.+++.+
T Consensus 66 gia~pG~vd~~~g~i~~~~~~~~~~~~~~~l~~~l~~~~~~pv~v~NDa~aaa~~E~~~~~~~~~~~~~v~lgtGIG~gi 145 (302)
T PRK09698 66 VMGFPALVSKDRRTVISTPNLPLTALDLYDLADKLENTLNCPVFFSRDVNLQLLWDVKENNLTQQLVLGAYLGTGMGFAV 145 (302)
T ss_pred EEeCCcceeCCCCEEEecCCCCccccccCCHHHHHHHHhCCCEEEcchHhHHHHHHHHhcCCCCceEEEEEecCceEEEE
Confidence 999999875321 1 1122211
Q ss_pred ------------cHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHhcCCCChhhHHHHhccCCChHHhhcchHHHHHHHHh
Q 023529 119 ------------SGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEA 186 (281)
Q Consensus 119 ------------sg~~iG~~~l~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~a~~a~~v~~~A~~ 186 (281)
.+.++| |+...+++..|.|+-. +|++.+ .|..++.+++..... . ....++++. .
T Consensus 146 v~~G~~~~G~~g~agEiG-----h~~v~~~~~~C~CG~~-gclE~~--~S~~al~~~~~~~~~--~--~~~~~l~~~--~ 211 (302)
T PRK09698 146 WMNGAPWTGAHGVAGELG-----HIPLGDMTQHCGCGNP-GCLETN--CSGMALRRWYEQQPR--D--YPLSDLFVH--A 211 (302)
T ss_pred EECCEEeeCCCCCccccC-----ceEeeCCCcccCCCCc-cchHhh--cCHHHHHHHHHHhcC--C--CCHHHHHHH--c
Confidence 011222 3333345555555543 556655 477777765432211 1 113556654 3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhC--C----CceeeC
Q 023529 187 GDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDY--P----GAVPIR 260 (281)
Q Consensus 187 GD~~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~--p----~~~i~~ 260 (281)
+|+ .++++++++|+.+++++++.|| |+.|||||+++...+ + +.+.+++.++++. | .++|..
T Consensus 212 ~~~---~~~~~~~~~la~~l~~li~~ld--------P~~IvlgG~~~~~~~-~-~~~~l~~~~~~~~~~~~~~~~~~i~~ 278 (302)
T PRK09698 212 GDH---PFIQSLLENLARAIATSINLFD--------PDAIILGGGVMDMPA-F-PRETLIAMIQKYLRKPLPYEVVRFIY 278 (302)
T ss_pred CCH---HHHHHHHHHHHHHHHHHHHHhC--------CCEEEEcCccccCch-h-HHHHHHHHHHHHccCccccCCcEEEE
Confidence 665 4789999999999999999999 999999999998765 3 7889999998864 2 234443
Q ss_pred C---CCChhHHHHHHHHhhhh
Q 023529 261 P---KVEPAVGAALLAWNSFM 278 (281)
Q Consensus 261 ~---~~~~~~GAa~la~~~~~ 278 (281)
+ .+++++||++++++.+.
T Consensus 279 ~~~~~~a~~~GAa~~~~~~~~ 299 (302)
T PRK09698 279 ASSSDFNGAQGAAILAHQRFL 299 (302)
T ss_pred CCcCCcccHHhHHHHHHHhhc
Confidence 2 46689999999987754
No 9
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=99.81 E-value=1.5e-18 Score=157.05 Aligned_cols=216 Identities=15% Similarity=0.089 Sum_probs=149.2
Q ss_pred EEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCccccceeEEccc
Q 023529 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (281)
Q Consensus 24 viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~Igig~~ 103 (281)
++|||+|+|+++++++|+ +|+++.+.+.+.... .+++++++.+.+.++++.. ++.+||+++|
T Consensus 3 ~lgvdig~~~i~~~l~dl---------~g~i~~~~~~~~~~~--~~~~~~~~~i~~~i~~~~~-------~~~~igi~~p 64 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGE---------DGQIRQRRQIPTPAS--QTPEALRQALSALVSPLQA-------QADRVAVAST 64 (291)
T ss_pred EEEEEECCCEEEEEEEcC---------CCcEEEEEEecCCCC--CCHHHHHHHHHHHHHHhhh-------cCcEEEEeCc
Confidence 799999999999999997 899998877764321 3567777777777776643 3568999999
Q ss_pred CCCChhh-----------H------HHHHHhh---------------cHHHHH-----------------H---------
Q 023529 104 GVNHPTD-----------Q------QRILNWL---------------SGYGIA-----------------A--------- 125 (281)
Q Consensus 104 G~~~~~~-----------~------~~l~~~~---------------sg~~iG-----------------~--------- 125 (281)
|+++... | +.+++.+ ..+|.| .
T Consensus 65 G~vd~~~~~~~~~~~~~~w~~~~l~~~l~~~~~~pv~v~NDa~a~a~aE~~~g~~~~~~~~~l~ig~GiG~giv~~G~~~ 144 (291)
T PRK05082 65 GIINDGILTALNPHNLGGLLHFPLVQTLEQLTDLPTIALNDAQAAAWAEYQALPDDIRNMVFITVSTGVGGGIVLNGKLL 144 (291)
T ss_pred ccccCCeeEEecCCCCccccCCChHHHHHHHhCCCEEEECcHHHHHHHHHHhcCCCCCCEEEEEECCCcceEEEECCEEe
Confidence 9875211 1 1122211 001111 0
Q ss_pred -------HHHHHHHHhhcCCCCCchhHHHHHHhcCCCChhhHHHHhccCCChHHhhcchHHHHHHHHhCCHHHHHHHHHH
Q 023529 126 -------QALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDS 198 (281)
Q Consensus 126 -------~~l~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~a~~a~~v~~~A~~GD~~A~~il~~a 198 (281)
.-++|+...++|..|.|+. .+|++.+ .|..++.+...... .. .....+++++++||+.|.++++++
T Consensus 145 ~G~~g~AGEiGh~~v~~~g~~c~CG~-~GclE~~--~S~~al~~~~~~~~--~~--~~~~~i~~~~~~gd~~a~~~~~~~ 217 (291)
T PRK05082 145 TGPGGLAGHIGHTLADPHGPVCGCGR-RGCVEAI--ASGRAIAAAAQGWL--AG--CDAKTIFERAGQGDEQAQALINRS 217 (291)
T ss_pred eCCCCccccccceEecCCCCCCCCCC-cCchhhh--cCHHHHHHHHHHhh--cC--CCHHHHHHHHHcCCHHHHHHHHHH
Confidence 0012444455666666655 4566666 47777765432211 01 124689999999999999999999
Q ss_pred HHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhC--CCceeeCC---CCChhHHHHHHH
Q 023529 199 VEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDY--PGAVPIRP---KVEPAVGAALLA 273 (281)
Q Consensus 199 a~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~--p~~~i~~~---~~~~~~GAa~la 273 (281)
+++|+.+++++++.|| |+.|||+|++... +. |.+.+++.+++.. ..++|..+ .+++++||++++
T Consensus 218 ~~~la~~l~~l~~~~d--------pe~IvlgG~~~~~-~~--~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~ 286 (291)
T PRK05082 218 AQAIARLIADLKATLD--------CQCVVLGGSVGLA-EG--YLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWA 286 (291)
T ss_pred HHHHHHHHHHHHHHhC--------CCEEEEcCccccH-HH--HHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHh
Confidence 9999999999999999 9999999998764 32 6788999998752 13444433 466899999998
Q ss_pred Hh
Q 023529 274 WN 275 (281)
Q Consensus 274 ~~ 275 (281)
++
T Consensus 287 ~~ 288 (291)
T PRK05082 287 QG 288 (291)
T ss_pred cc
Confidence 75
No 10
>PRK00292 glk glucokinase; Provisional
Probab=99.73 E-value=2.7e-17 Score=150.66 Aligned_cols=88 Identities=13% Similarity=0.059 Sum_probs=71.7
Q ss_pred hHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCc-cEEEEcCccc-CcchhhhHH-HHHHHHHhh
Q 023529 177 VPVVVSCAEAGD-EVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSF-PLVMVGGVLE-ANRRWDIGR-EVVKCILRD 252 (281)
Q Consensus 177 a~~v~~~A~~GD-~~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~-~IvLgGgv~~-~~~~~~l~~-~i~~~l~~~ 252 (281)
.+.|++++++|| +.|++++++++++|+.++.++++.|| |+ .|+|+||++. ..+ + +.+ .|.+.+.++
T Consensus 215 ~~~i~~~a~~gdd~~A~~~~~~~~~~lg~~i~~l~~~~~--------P~~~vvi~Gg~~~~~~~-~-~~~~~~~~~~~~~ 284 (316)
T PRK00292 215 PADITERALAGSCPLCRRTLSLFCVILGRVAGNLALTLG--------ARGGVYIAGGIVPRFLE-F-FKASGFRAAFEDK 284 (316)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHhc--------CCceEEEeCchHHhHHh-h-hccHHHHHHHhcC
Confidence 678999999998 99999999999999999999999999 99 9999999985 544 3 555 678888764
Q ss_pred C--C------CceeeCCCCChhHHHHHHHH
Q 023529 253 Y--P------GAVPIRPKVEPAVGAALLAW 274 (281)
Q Consensus 253 ~--p------~~~i~~~~~~~~~GAa~la~ 274 (281)
. + .+.+....+++++||++++.
T Consensus 285 ~~~~~~~~~~~i~~~~~~~agl~GAa~~~~ 314 (316)
T PRK00292 285 GRFSAYLADIPVYVITHPQPGLLGAGAYLR 314 (316)
T ss_pred CChhhHHhcCCEEEEcCCChHHHHHHHHHh
Confidence 3 2 12333456789999998874
No 11
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=99.67 E-value=2.6e-16 Score=156.89 Aligned_cols=95 Identities=15% Similarity=0.078 Sum_probs=78.2
Q ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhH-HHHHHHHHhhCC-
Q 023529 177 VPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIG-REVVKCILRDYP- 254 (281)
Q Consensus 177 a~~v~~~A~~GD~~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~-~~i~~~l~~~~p- 254 (281)
+++|++++++||+.|++++++++++||.++.++++.+| .|+.|+||||+.....++ +. +.|++++..+-|
T Consensus 231 ~~~i~~~a~~gd~~A~~~~~~~~~~lg~~~~nl~~~~~-------~p~~vvigGGIs~~~~~~-l~~~~f~~~f~~kg~~ 302 (638)
T PRK14101 231 TAEIVERAHAGDALALEAVECFCAILGTFAGNLALTLG-------ALGGIYIGGGVVPKLGEL-FTRSSFRARFEAKGRF 302 (638)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCCcEEEeCcHHHHHHHH-cChHHHHHHHHhCCCh
Confidence 68899999999999999999999999999999999996 279999999998654333 44 478888876521
Q ss_pred -------CceeeCCCCChhHHHHHHHHhhhhc
Q 023529 255 -------GAVPIRPKVEPAVGAALLAWNSFMN 279 (281)
Q Consensus 255 -------~~~i~~~~~~~~~GAa~la~~~~~~ 279 (281)
++.++....+++.||+..+++++.+
T Consensus 303 ~~~~~~ipv~~i~~~~~~l~Gaa~~~~~~~~~ 334 (638)
T PRK14101 303 EAYLANIPTYLITAEYPAFLGVSAILAEQLSN 334 (638)
T ss_pred HHHHhcCCEEEEeCCChhHHHHHHHHHHHhcc
Confidence 3455566788999999999888764
No 12
>PRK12408 glucokinase; Provisional
Probab=99.65 E-value=1.2e-15 Score=141.16 Aligned_cols=90 Identities=19% Similarity=0.201 Sum_probs=70.4
Q ss_pred hHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCcc-EEEEcCcccC-cchhhhHHH--HHHHHHh
Q 023529 177 VPVVVSCAEAG-DEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFP-LVMVGGVLEA-NRRWDIGRE--VVKCILR 251 (281)
Q Consensus 177 a~~v~~~A~~G-D~~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~-IvLgGgv~~~-~~~~~l~~~--i~~~l~~ 251 (281)
++.|++++.+| |+.|.+++++++++|+..+.++++.|| |+. |+|+||++.. .+ + +.+. +++.+++
T Consensus 233 ~~~v~~~a~~ggD~~A~~~~~~~~~~La~~i~nl~~~ld--------Pe~GIvIGGGIs~~~~~-~-l~~~~f~~~~~~~ 302 (336)
T PRK12408 233 PAAITAAALAGDDALAHEALQVFCGFLGSVVGDMALAYG--------ARGGVYLAGGILPQIAD-F-LARSDFVERFLNK 302 (336)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCceEEEECchhHhHHh-h-hcCHHHHHHHhcc
Confidence 67899988876 999999999999999999999999999 999 9999999866 44 2 5554 6665555
Q ss_pred hC-----CC--ceeeCCCCChhHHHHHHHHhh
Q 023529 252 DY-----PG--AVPIRPKVEPAVGAALLAWNS 276 (281)
Q Consensus 252 ~~-----p~--~~i~~~~~~~~~GAa~la~~~ 276 (281)
.. .. +.+....+++++||+.+++++
T Consensus 303 ~~~~~~~~~~~I~~~~~~~agl~GAa~~~~~~ 334 (336)
T PRK12408 303 GPMRPALEQVPVKLVEHGQLGVLGAASWYLQH 334 (336)
T ss_pred CchhhHhcCCCEEEEeCCChHHHHHHHHHHhh
Confidence 31 12 333333478999999887764
No 13
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=99.53 E-value=1.3e-13 Score=122.75 Aligned_cols=165 Identities=10% Similarity=0.008 Sum_probs=112.0
Q ss_pred EEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCccccceeEEcc
Q 023529 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (281)
Q Consensus 23 ~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~Igig~ 102 (281)
+++|||+|+|+++++++|+ +|+++.+.+.++. . .+++++++.+.+.++++.... ..+.+|||++
T Consensus 1 ~~lgidiggt~i~~~l~d~---------~g~i~~~~~~~~~-~--~~~~~~~~~i~~~i~~~~~~~----~~~~gIgv~~ 64 (256)
T PRK13311 1 MYYGFDMGGTKIELGVFDE---------NLQRIWHKRVPTP-R--EDYPQLLQILRDLTEEADTYC----GVQGSVGIGI 64 (256)
T ss_pred CEEEEEECCCcEEEEEECC---------CCCEEEEEEecCC-C--cCHHHHHHHHHHHHHHHHhhc----CCCceEEEEe
Confidence 4799999999999999997 9999988887753 2 467778888887777665432 2345999999
Q ss_pred cCCCChhh----------H------HHHHHhh------------------------------------------------
Q 023529 103 SGVNHPTD----------Q------QRILNWL------------------------------------------------ 118 (281)
Q Consensus 103 ~G~~~~~~----------~------~~l~~~~------------------------------------------------ 118 (281)
||+++++. + +.+++.+
T Consensus 65 pG~vd~~~g~i~~~~~~~w~~~~l~~~l~~~~~~pV~leNDanaaAlaE~~~g~~~~~~~~v~i~lgtGiG~giv~~G~l 144 (256)
T PRK13311 65 PGLPNADDGTVFTANVPSAMGQPLQADLSRLIQREVRIDNDANCFALSEAWDPEFRTYPTVLGLILGTGVGGGLIVNGSI 144 (256)
T ss_pred cCcEECCCCEEEccCCCcccCCChHHHHHHHHCCCEEEEchhhHHHHHHHHhcCCCCCCcEEEEEECcCeEEEEEECCEE
Confidence 99864321 1 1222211
Q ss_pred ------cHHHHHHHHHHHHHHhh----------cCCCCCchhHHHHHHhcCCCChhhHHHHhccCCChHHhhcchHHHHH
Q 023529 119 ------SGYGIAAQALTAVIRAY----------DGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVS 182 (281)
Q Consensus 119 ------sg~~iG~~~l~~~~~~~----------dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~a~~a~~v~~ 182 (281)
.+.++|| +.... ++..|.|+.. .|++.+ .|..+|......... .. ...+.|++
T Consensus 145 ~~G~~g~AGEiGh-----~~v~~~~~~~~~~~~~~~~c~cG~~-GclE~~--~S~~ai~~~~~~~~~-~~--~~~~~l~~ 213 (256)
T PRK13311 145 VSGRNHITGEFGH-----FRLPVDALDILGADIPRVPCGCGHR-GCIENY--ISGRGFEWMYSHFYQ-HT--LPATDIIA 213 (256)
T ss_pred ecCCCCCCcccee-----EEeccCcccccccCCCCCcCCCCCc-cchhhe--ecHHHHHHHHHHhcc-CC--CCHHHHHH
Confidence 1122344 32211 2444555543 456666 477777553322110 11 13588999
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 023529 183 CAEAGDEVANKILQDSVEELALSVKAVVQRLS 214 (281)
Q Consensus 183 ~A~~GD~~A~~il~~aa~~l~~~i~~lv~~l~ 214 (281)
++++||+.|++++++++++||.++++++++|+
T Consensus 214 ~~~~gd~~a~~~~~~~~~~la~~i~nl~~~~~ 245 (256)
T PRK13311 214 HYAAGEPKAVAHVERFMDVLAVCLGNLLTMLG 245 (256)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999
No 14
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=99.41 E-value=3.1e-13 Score=123.98 Aligned_cols=84 Identities=11% Similarity=0.022 Sum_probs=65.7
Q ss_pred hHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCc-cEEEEcCcc-cCcchhhhHH-HHHHHHHhh
Q 023529 177 VPVVVSCAEAGD-EVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSF-PLVMVGGVL-EANRRWDIGR-EVVKCILRD 252 (281)
Q Consensus 177 a~~v~~~A~~GD-~~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~-~IvLgGgv~-~~~~~~~l~~-~i~~~l~~~ 252 (281)
++.|++++++|| +.|+++++++.++||..+.++++.|| |+ .+++.||++ +..+ + +.+ .|.++++++
T Consensus 221 ~~~I~~aa~~Gdd~~A~~~~~~~~~~lg~~i~nl~~~ld--------peggv~v~GG~~~~~~~-~-~~~~~f~~~~~~~ 290 (316)
T TIGR00749 221 PKDISERALAGSCTDCRRALSLFCVIYGRFAGNLALNLG--------TRGGVYIAGGIVPRFIE-F-FKASGFRAAFEDK 290 (316)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCCcEEEECcHHHhHHh-h-hCchHHHHHHhcc
Confidence 688999999997 99999999999999999999999999 98 677777776 4444 2 343 788888664
Q ss_pred CC--------CceeeCCCCChhHHHH
Q 023529 253 YP--------GAVPIRPKVEPAVGAA 270 (281)
Q Consensus 253 ~p--------~~~i~~~~~~~~~GAa 270 (281)
-| ++.++...+.+++||+
T Consensus 291 ~~~~~~~~~~pv~~i~~~~~~l~G~~ 316 (316)
T TIGR00749 291 GRMKEYVHDIPVYVVLHDNPGLLGAG 316 (316)
T ss_pred CChhHHHhhCCEEEEcCCCccccCCC
Confidence 21 3455556677888873
No 15
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=99.31 E-value=5.9e-11 Score=110.16 Aligned_cols=68 Identities=25% Similarity=0.248 Sum_probs=60.3
Q ss_pred chHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHc--ccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhC
Q 023529 176 LVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRL--SLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDY 253 (281)
Q Consensus 176 ~a~~v~~~A~~GD~~A~~il~~aa~~l~~~i~~lv~~l--~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~ 253 (281)
..++|++++++||+.|+.++++.+++|++.+.++++.| | |+.||++||+.++ +. +++.+.+.+....
T Consensus 253 d~reI~~~a~~GD~~A~~a~d~~~~~la~~Ia~l~~~l~g~--------pD~IV~gGGI~e~-~~--l~~~I~~~l~~~a 321 (351)
T TIGR02707 253 DAREVEKRIEAGDEKAKLILDAMAYQIAKEIGKMAVVLKGK--------VDAIVLTGGLAYS-KY--FVSEIIKRVSFIA 321 (351)
T ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------CCEEEEcchhhcC-HH--HHHHHHHHHHhhC
Confidence 36889999999999999999999999999999999999 6 9999999999975 42 6788988888753
Q ss_pred C
Q 023529 254 P 254 (281)
Q Consensus 254 p 254 (281)
|
T Consensus 322 ~ 322 (351)
T TIGR02707 322 P 322 (351)
T ss_pred C
Confidence 3
No 16
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=99.18 E-value=2.5e-09 Score=96.19 Aligned_cols=225 Identities=12% Similarity=0.165 Sum_probs=135.0
Q ss_pred cEEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCccccceeEEc
Q 023529 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (281)
Q Consensus 22 ~~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~Igig 101 (281)
.+++|||+|.|.++++++| +++++.....++.. ++ .+...+.+++++++.|....++.++ +
T Consensus 32 m~~~GIDiGStt~K~Vlld----------~~~i~~~~~~~tg~----~~---~~~a~~~l~~~l~~~g~~~~~v~~~--~ 92 (293)
T TIGR03192 32 IITCGIDVGSVSSQAVLVC----------DGELYGYNSMRTGN----NS---PDSAKNALQGIMDKIGMKLEDINYV--V 92 (293)
T ss_pred cEEEEEEeCchhEEEEEEe----------CCEEEEEEeecCCC----CH---HHHHHHHHHHHHHHcCCcccceEEE--E
Confidence 3899999999999999999 56777666655322 22 2345677788888888876677775 4
Q ss_pred ccCCCChhhH---HHHHHhhcHHH----------------HHHHHHHHHHHhhcCCC--------C---CchhHHHHHHh
Q 023529 102 VSGVNHPTDQ---QRILNWLSGYG----------------IAAQALTAVIRAYDGRG--------P---DTMLTSNILST 151 (281)
Q Consensus 102 ~~G~~~~~~~---~~l~~~~sg~~----------------iG~~~l~~~~~~~dg~~--------~---~~~l~~~~~~~ 151 (281)
..|+...... ..+.+. +... ||.+-...+..+.+|.. | .+.+...+.+.
T Consensus 93 ~TGyGr~~~~~a~~~v~EI-taha~Ga~~~~pp~v~tIIDIGGQDsK~I~~d~~G~v~dF~MNdkCAAGTGrFLE~~A~~ 171 (293)
T TIGR03192 93 GTGYGRVNVPFAHKAITEI-ACHARGANYMGGNAVRTILDMGGQDCKAIHCDEKGKVTNFLMNDKCAAGTGRGMEVISDL 171 (293)
T ss_pred EECcchhhcchhhcceeeH-HHHHHHHHHhcCCCCCEEEEeCCCceEEEEEcCCCcEeeeeecCcccccccHHHHHHHHH
Confidence 5787532211 111111 1111 22211110111123322 1 23455666777
Q ss_pred cCCCChhhHHHHhccC-CChHHhhc----ch-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCcc
Q 023529 152 LELSSPDELIGWTYVD-PSWARIAA----LV-PVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFP 225 (281)
Q Consensus 152 ~~~~s~~~l~~~~~~~-~~~~~~a~----~a-~~v~~~A~~GD~~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~ 225 (281)
+++ +.+++-....+. ..+..++. ++ .+|..+..+|-+.. +|+.-..+-+++.+..+++.+.+ ..+
T Consensus 172 Lgi-~leel~~~a~~~~~~p~~Iss~CtVFAeSevi~l~~~G~~~e-dI~aGl~~sia~rv~~~~~~~~i-------~~~ 242 (293)
T TIGR03192 172 MQI-PIADLGPRSFDVETEPEAVSSICVVFAKSEALGLLKAGYTKN-MVIAAYCQAMAERVVSLLERIGV-------EEG 242 (293)
T ss_pred cCC-CHHHHHHHHHhcCCCCCCcCCcceEeccHhHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHhcccCC-------CCC
Confidence 775 667776544221 11123332 22 35777778887654 67777777788888888777664 457
Q ss_pred EEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeCCCCChhHHHHHHHHhhhhc
Q 023529 226 LVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGAALLAWNSFMN 279 (281)
Q Consensus 226 IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~~~~~~~~GAa~la~~~~~~ 279 (281)
|++.||+..+.. +...+++.|......+ ...|+..+++||+++|.+.++.
T Consensus 243 v~~~GGva~N~~---l~~al~~~Lg~~v~~~-p~~p~~~GAlGAAL~A~~~~~~ 292 (293)
T TIGR03192 243 FFITGGIAKNPG---VVKRIERILGIKAVDT-KIDSQIAGALGAALFGYTLMQK 292 (293)
T ss_pred EEEECcccccHH---HHHHHHHHhCCCceeC-CCCccHHHHHHHHHHHHHHhhc
Confidence 899999997753 7788888775421100 1125667899999999887653
No 17
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=99.14 E-value=9.2e-10 Score=97.62 Aligned_cols=209 Identities=25% Similarity=0.292 Sum_probs=124.7
Q ss_pred EEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCccccceeEEcc
Q 023529 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (281)
Q Consensus 23 ~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~Igig~ 102 (281)
|++|||+|+|+++++++| +|+++.+...++.. . ++.+.+.+.+++++.+.+..++.+| ++
T Consensus 1 ~~lGIDiGtts~K~vl~d----------~g~il~~~~~~~~~----~----~~~~~~~l~~~~~~~~~~~~~i~~i--~~ 60 (248)
T TIGR00241 1 ISLGIDSGSTTTKMVLME----------DGKVIGYKWLDTTP----V----IEETARAILEALKEAGIGLEPIDKI--VA 60 (248)
T ss_pred CEEEEEcChhheEEEEEc----------CCEEEEEEEecCCC----C----HHHHHHHHHHHHHHcCCChhheeEE--EE
Confidence 589999999999999999 78999888764322 2 3444567777788888777777775 44
Q ss_pred cCCCChhhH---HHHHHhhcHHH---------------HHHHHHHHHHHhhcCCC--------C---CchhHHHHHHhcC
Q 023529 103 SGVNHPTDQ---QRILNWLSGYG---------------IAAQALTAVIRAYDGRG--------P---DTMLTSNILSTLE 153 (281)
Q Consensus 103 ~G~~~~~~~---~~l~~~~sg~~---------------iG~~~l~~~~~~~dg~~--------~---~~~l~~~~~~~~~ 153 (281)
+|....... ..+.+. .... ||.+-.. ++...+|.. | ...+...+.+.++
T Consensus 61 Tg~~~~~v~~~~~~~~ei-~~~~~g~~~~~~~~~~vidiGgqd~k-~i~~~~g~~~~~~~n~~ca~Gtg~f~e~~a~~l~ 138 (248)
T TIGR00241 61 TGYGRHKVGFADKIVTEI-SCHGKGANYLAPEARGVIDIGGQDSK-VIKIDDGKVDDFTMNDKCAAGTGRFLEVTARRLG 138 (248)
T ss_pred ECCCcccccccCCceEEh-hHHHHHHHHHCCCCCEEEEecCCeeE-EEEECCCcEeeeeecCcccccccHHHHHHHHHcC
Confidence 665321110 001000 1111 2221110 000012211 1 2235566777787
Q ss_pred CCChhhHHHHhccCCChHHhhc----ch-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCc-cEE
Q 023529 154 LSSPDELIGWTYVDPSWARIAA----LV-PVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSF-PLV 227 (281)
Q Consensus 154 ~~s~~~l~~~~~~~~~~~~~a~----~a-~~v~~~A~~GD~~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~-~Iv 227 (281)
+ +++++-....+...+..++. ++ .++.....+|.+. .+++....+.++..+..+++.++ +. +|+
T Consensus 139 ~-~~~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~~l~~g~~~-~di~~~~~~~va~~i~~~~~~~~--------~~~~Vv 208 (248)
T TIGR00241 139 V-SVEELGSLAEKADRKAKISSMCTVFAESELISLLAAGVKK-EDILAGVYESIAERVAEMLQRLK--------IEAPIV 208 (248)
T ss_pred C-CHHHHHHHHhcCCCCCCcCCEeEEEechhHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHhhcC--------CCCCEE
Confidence 5 66666554433211122211 11 4577777788754 48889999999999999888877 66 899
Q ss_pred EEcCcccCcchhhhHHHHHHHHHhhCCCceeeCC---CCChhHHHHH
Q 023529 228 MVGGVLEANRRWDIGREVVKCILRDYPGAVPIRP---KVEPAVGAAL 271 (281)
Q Consensus 228 LgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~~---~~~~~~GAa~ 271 (281)
+.||++.+.. +.+.+.+.+.. .+..+ ...+++||++
T Consensus 209 l~GGva~n~~---l~~~l~~~lg~-----~v~~~~~~~~~~AlGaAl 247 (248)
T TIGR00241 209 FTGGVSKNKG---LVKALEKKLGM-----KVITPPEPQIVGAVGAAL 247 (248)
T ss_pred EECccccCHH---HHHHHHHHhCC-----cEEcCCCccHHHHHHHHh
Confidence 9999997643 67777777642 23333 3457888886
No 18
>PTZ00288 glucokinase 1; Provisional
Probab=99.14 E-value=7.2e-10 Score=104.49 Aligned_cols=94 Identities=12% Similarity=0.077 Sum_probs=67.1
Q ss_pred hHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhH-HH---HHHHH-H
Q 023529 177 VPVVVSCAE-AGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIG-RE---VVKCI-L 250 (281)
Q Consensus 177 a~~v~~~A~-~GD~~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~-~~---i~~~l-~ 250 (281)
...++++|. +||+.|.+++++.++++|..+.+++..++ |+.|+|+||+.....++ +. +. +.+.. .
T Consensus 285 ~a~ia~~A~~~gD~~A~~al~~f~~~LG~~~~nlal~l~--------P~~VvIgGGi~~~~~~~-l~~~~~~~f~~~f~~ 355 (405)
T PTZ00288 285 AAEVAKLAKYGSDVAAVKAMKRHYKYLMRLAAEISMQFL--------PLTVVLMGDNIVYNSFF-FDNPENVKQLQARIT 355 (405)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCEEEEECccHHhhHHH-HhccchHHHHHHHHh
Confidence 467888887 58999999999999999999999999999 99999999776554433 33 12 22222 1
Q ss_pred -------hhCCCce--e-eCCCCChhHHHHHHHHhhhhc
Q 023529 251 -------RDYPGAV--P-IRPKVEPAVGAALLAWNSFMN 279 (281)
Q Consensus 251 -------~~~p~~~--i-~~~~~~~~~GAa~la~~~~~~ 279 (281)
+....+. + +...+.+++||++++.+.+..
T Consensus 356 ~~k~~r~~~l~~ipv~~qv~~~~~gL~Gaa~~a~~~~~~ 394 (405)
T PTZ00288 356 EHKMERLKFLSRTTFLRQKKSVNLNLLGCLQFGSQLSHL 394 (405)
T ss_pred cCccChHHHHhcCceEEEEeCCCccHHHHHHHHHHhhcc
Confidence 1111222 2 345678999999999876543
No 19
>PRK03011 butyrate kinase; Provisional
Probab=99.08 E-value=2.2e-09 Score=99.99 Aligned_cols=86 Identities=17% Similarity=0.130 Sum_probs=71.4
Q ss_pred chHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHc--ccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhC
Q 023529 176 LVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRL--SLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDY 253 (281)
Q Consensus 176 ~a~~v~~~A~~GD~~A~~il~~aa~~l~~~i~~lv~~l--~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~ 253 (281)
..++|++++++||+.|+.++++.+..+++.|.++++.| | |+.|||+||+.. .+ + +++.+++.+....
T Consensus 255 d~reV~~~a~~GD~~A~~ald~~~~~lak~I~~l~~~L~gd--------pD~IVlgGGI~~-~~-~-l~~~I~~~l~~~~ 323 (358)
T PRK03011 255 DAREVEKRIEEGDEKAKLVYEAMAYQIAKEIGAMAAVLKGK--------VDAIVLTGGLAY-SK-R-LVERIKERVSFIA 323 (358)
T ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------CCEEEEeCcccc-CH-H-HHHHHHHHHHhhC
Confidence 36889999999999999999999999999999999999 6 999999999998 45 2 8899999998653
Q ss_pred CCceeeCCC---CChhHHHHHHH
Q 023529 254 PGAVPIRPK---VEPAVGAALLA 273 (281)
Q Consensus 254 p~~~i~~~~---~~~~~GAa~la 273 (281)
.+.+.++. .+.+.||+.+.
T Consensus 324 -pv~i~p~~~e~~A~a~GA~rvl 345 (358)
T PRK03011 324 -PVIVYPGEDEMEALAEGALRVL 345 (358)
T ss_pred -CeEEEeCCCHHHHHHHHHHHHH
Confidence 45555543 34678877654
No 20
>PRK00976 hypothetical protein; Provisional
Probab=99.01 E-value=2.3e-09 Score=97.52 Aligned_cols=90 Identities=22% Similarity=0.219 Sum_probs=73.0
Q ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhC-CC
Q 023529 177 VPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDY-PG 255 (281)
Q Consensus 177 a~~v~~~A~~GD~~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~-p~ 255 (281)
.++++++|++||+.|++++++++++++..++++++.+| |+.|+||||+.+..+ + .+.+.+++++ +.
T Consensus 226 ~~eIfeaA~~GD~~A~~aid~~~~~LA~~IAnLi~llD--------Pe~IVLGGGVS~~~e---~--~L~~~I~e~l~~~ 292 (326)
T PRK00976 226 KEELLEAYEKGDEKAKLAIDTLALFVAMEIASLLLLNP--------EDNVVLAGSVGEMDE---P--DVSERIKELLDKK 292 (326)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCEEEEcCccccCch---h--HHHHHHHHHhccc
Confidence 57899999999999999999999999999999999999 999999999998875 2 3444444443 22
Q ss_pred ceeeCCCCChhHHHHHHHHhhhhcc
Q 023529 256 AVPIRPKVEPAVGAALLAWNSFMNA 280 (281)
Q Consensus 256 ~~i~~~~~~~~~GAa~la~~~~~~~ 280 (281)
.-...+.++++||+++|.+.+...
T Consensus 293 -~a~LG~dAGaiGAA~iA~~i~~G~ 316 (326)
T PRK00976 293 -VLVLGKESAAIGLALIARDIFNGK 316 (326)
T ss_pred -ccccCCchHHHHHHHHHHHHhCCC
Confidence 122356889999999998876543
No 21
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=98.89 E-value=3.7e-08 Score=90.31 Aligned_cols=91 Identities=14% Similarity=0.091 Sum_probs=63.3
Q ss_pred chHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCc-cEEEEcCcccCcchhhhH-HHHHHHHHhh
Q 023529 176 LVPVVVSCAE-AGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSF-PLVMVGGVLEANRRWDIG-REVVKCILRD 252 (281)
Q Consensus 176 ~a~~v~~~A~-~GD~~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~-~IvLgGgv~~~~~~~~l~-~~i~~~l~~~ 252 (281)
.+.+|.++|. .+|+.|++.++....++|..+.+++..+. |. -|+|+||++....++ +. +.|.++...+
T Consensus 214 ~~~~I~~~A~~~~d~~a~~al~~f~~~lg~~agdlaL~~~--------a~gGvyiaGGI~~~~~~~-l~~~~F~~~F~~k 284 (316)
T PF02685_consen 214 SAAEISAAALEGGDPLAREALDLFARILGRVAGDLALTFL--------ARGGVYIAGGIAPRLLPL-LDESAFREAFEDK 284 (316)
T ss_dssp -HHHHHHHHHCT--HHHHHHHHHHHHHHHHHHHHHHHHHT---------TCEEEEE-TTGGGGHHH-HHCSSHHHHHH--
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCeeEEEecchhhHHHHH-cChhHHHHHHhcc
Confidence 3678998886 56899999999999999999999999998 65 499999999776543 33 3566655443
Q ss_pred --C----C--CceeeCCCCChhHHHHHHHHh
Q 023529 253 --Y----P--GAVPIRPKVEPAVGAALLAWN 275 (281)
Q Consensus 253 --~----p--~~~i~~~~~~~~~GAa~la~~ 275 (281)
+ . ++.++...+.++.||+..+.+
T Consensus 285 g~~~~~l~~iPv~li~~~~~gL~Gaa~~a~~ 315 (316)
T PF02685_consen 285 GRMSDLLEDIPVYLITDPDAGLLGAAAYARQ 315 (316)
T ss_dssp GGGHHHHTT--EEEE--S-HHHHHHHHHHHH
T ss_pred CCcHHHHhcCcEEEEeCCCHHHHHHHHHHhc
Confidence 1 1 345555667899999999875
No 22
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=98.89 E-value=2.2e-08 Score=88.91 Aligned_cols=222 Identities=18% Similarity=0.163 Sum_probs=128.3
Q ss_pred EEEEEecCccceeeeeeecccCCCCCCCCCC---eEEEEecCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCccccceeE
Q 023529 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLP---VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVC 99 (281)
Q Consensus 23 ~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~---il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~Ig 99 (281)
+++|||+|.|.++++++|. +++ ++.....++ +. .++ .+...+.+++++++.+++..++.++
T Consensus 2 ~~~GIDiGStttK~Vlid~---------~~~~~~~~~~~~~~~-~~--~~~---~~~~~~~l~~~~~~~g~~~~~i~~i- 65 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEV---------DGDKEECLAKRNDRI-RQ--RDP---FKLAEDAYDDLLEEAGLAAADVAYC- 65 (262)
T ss_pred eEEEEEcCcccEEEEEEec---------CCCeeEEEEEEEecC-CC--CCH---HHHHHHHHHHHHHHcCCChhheEEE-
Confidence 6899999999999999993 443 333333332 22 122 2345677888888999877777775
Q ss_pred EcccCCCChhhH--HHHHHhhcHHH---------------HHHHHHHHHHHhhcCCC--------C---CchhHHHHHHh
Q 023529 100 LAVSGVNHPTDQ--QRILNWLSGYG---------------IAAQALTAVIRAYDGRG--------P---DTMLTSNILST 151 (281)
Q Consensus 100 ig~~G~~~~~~~--~~l~~~~sg~~---------------iG~~~l~~~~~~~dg~~--------~---~~~l~~~~~~~ 151 (281)
+..|+...... ..+.+. +... ||.+=...+..+.+|.. | .+.+...+...
T Consensus 66 -~~TGYGR~~~~a~~~vtEI-t~ha~GA~~~~p~~~tIiDIGGQD~K~I~~~~~G~v~~f~MNdkCAAGTG~FLe~~A~~ 143 (262)
T TIGR02261 66 -ATTGEGESLAFHTGHFYSM-TTHARGAIYLNPEARAVLDIGALHGRAIRMDERGKVEAYKMTSQCASGSGQFLENIARY 143 (262)
T ss_pred -EEECCchhhhhhcCCeeEE-eHHHHHHHHHCCCCCEEEEeCCCceEEEEEcCCCcEeeEEecCcccccccHHHHHHHHH
Confidence 55888543210 001110 1111 22221111111123322 1 23455666677
Q ss_pred cCCCChhhHHHHhccCCChHHhhc----ch-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccE
Q 023529 152 LELSSPDELIGWTYVDPSWARIAA----LV-PVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPL 226 (281)
Q Consensus 152 ~~~~s~~~l~~~~~~~~~~~~~a~----~a-~~v~~~A~~GD~~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~I 226 (281)
+++ +++++-+...+...+..++. ++ .+|..+..+|-+.. +|+.-..+-+++.+.++++.++. .+.+|
T Consensus 144 L~i-~leel~~~a~~~~~~~~iss~CtVFaeSevi~~~~~G~~~e-dI~aGl~~sia~r~~~~~~~~~~------~~~~v 215 (262)
T TIGR02261 144 LGI-AQDEIGSLSQQADNPEKVSGICAVLAETDVINMVSRGISAP-NILKGIHESMADRLAKLLKSLGA------LDGTV 215 (262)
T ss_pred hCC-CHHHHHHHHhcCCCCCCcCCCceEEchhhHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHhccCC------CCCcE
Confidence 775 67777765543322223332 22 35666777887654 77778888888888888888752 14469
Q ss_pred EEEcCcccCcchhhhHHHHHHHHHhhCCCceeeC---CCCChhHHHHHHH
Q 023529 227 VMVGGVLEANRRWDIGREVVKCILRDYPGAVPIR---PKVEPAVGAALLA 273 (281)
Q Consensus 227 vLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~---~~~~~~~GAa~la 273 (281)
++.||+..+.. +...+++.|......+.+.. ++..+++||++++
T Consensus 216 ~~~GGva~n~~---~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 216 LCTGGLALDAG---LLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred EEECcccccHH---HHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 99999887753 78888887743211222222 3455788988763
No 23
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=98.87 E-value=6.6e-08 Score=90.36 Aligned_cols=218 Identities=21% Similarity=0.224 Sum_probs=129.2
Q ss_pred cEEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCccccceeEEc
Q 023529 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (281)
Q Consensus 22 ~~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~Igig 101 (281)
.+++|||+|+|.++++++| +++++...-.++. .+ .+.+.+++++++++.|++..++.++ +
T Consensus 144 g~~lGIDiGSTttK~Vl~d----------d~~Ii~~~~~~t~-----~~---~~~a~~~l~~~l~~~Gl~~~di~~i--~ 203 (404)
T TIGR03286 144 GLTLGIDSGSTTTKAVVME----------DNEVIGTGWVPTT-----KV---IESAEEAVERALEEAGVSLEDVEAI--G 203 (404)
T ss_pred CEEEEEEcChhheeeEEEc----------CCeEEEEEEeecc-----cH---HHHHHHHHHHHHHHcCCCccceeEE--E
Confidence 3899999999999999998 6688877665532 11 4567788888999999877777764 6
Q ss_pred ccCCCChhhHHHHH-----HhhcHHHHHHHHHH-----------------HHHHhhcCCC--------C---CchhHHHH
Q 023529 102 VSGVNHPTDQQRIL-----NWLSGYGIAAQALT-----------------AVIRAYDGRG--------P---DTMLTSNI 148 (281)
Q Consensus 102 ~~G~~~~~~~~~l~-----~~~sg~~iG~~~l~-----------------~~~~~~dg~~--------~---~~~l~~~~ 148 (281)
+.|+........+. ..++....|...+. +++...+|.. | .+.+...+
T Consensus 204 ~TGyGR~~i~~~~~ad~iv~EItaha~GA~~L~p~~~~v~TIIDIGGQDsK~I~l~~G~v~dF~MNdkCAAGTGrFLE~~ 283 (404)
T TIGR03286 204 TTGYGRFTIGEHFGADLIQEELTVNSKGAVYLADKQEGPATVIDIGGMDNKAISVWDGIPDNFTMGGICAGASGRFLEMT 283 (404)
T ss_pred eeeecHHHHhhhcCCCceEEEEhhHHHHHHHhcccCCCCcEEEEeCCCceEEEEEcCCceeeEEEcCcccccCcHHHHHH
Confidence 68875433221110 00122222221110 0111123321 1 23455566
Q ss_pred HHhcCCCChhhHHHHhccC-CChHHhhc----ch-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-HHHHHcccCCCCCC
Q 023529 149 LSTLELSSPDELIGWTYVD-PSWARIAA----LV-PVVVSCAEAGDEVANKILQDSVEELALSVK-AVVQRLSLSGEDGK 221 (281)
Q Consensus 149 ~~~~~~~s~~~l~~~~~~~-~~~~~~a~----~a-~~v~~~A~~GD~~A~~il~~aa~~l~~~i~-~lv~~l~~~~~~~~ 221 (281)
...+++ +.+++.+...+. ..+.+++. ++ .++..+..+|-+. .+|+.-..+-+++.+. .+++..+.
T Consensus 284 A~~Lgi-~ieEl~~lA~~~~~~pv~IsS~CtVFaeSevIsll~~G~~~-eDIaAGl~~SIa~rv~~~l~~~~~i------ 355 (404)
T TIGR03286 284 AKRLGV-DITELGKLALKGMPEKVRMNSYCIVFGIQDLVTALAEGASP-EDVAAAACHSVAEQVYEQQLQEIDV------ 355 (404)
T ss_pred HHHhCC-CHHHHHHHHHhCCCCCCCccCcccccccHhHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHhhcCCC------
Confidence 667774 677777655432 11122222 11 4566677778654 3777777777777776 46777774
Q ss_pred CCccEEEEcCcccCcchhhhHHHHHHHHHhhCCCcee-eCCCCChhHHHHHHHH
Q 023529 222 HSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVP-IRPKVEPAVGAALLAW 274 (281)
Q Consensus 222 ~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i-~~~~~~~~~GAa~la~ 274 (281)
..+|++.||+..+.. +...+.+.+... +.+ ..++..+++||+++|.
T Consensus 356 -~~~VvftGGva~N~g---vv~ale~~Lg~~---iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 356 -REPVILVGGTSLIEG---LVKALGDLLGIE---VVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred -CCcEEEECChhhhHH---HHHHHHHHhCCc---EEECCcccHHHHHHHHHHhc
Confidence 346999999876533 677777766532 111 1245568999999874
No 24
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=98.82 E-value=2.3e-07 Score=85.22 Aligned_cols=217 Identities=23% Similarity=0.235 Sum_probs=125.1
Q ss_pred cEEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCccccceeEEc
Q 023529 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (281)
Q Consensus 22 ~~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~Igig 101 (281)
.+++|||.|.|+|+++|.+ +++++...-..++.- .+. ..+.+++++++.+.+..+|.+ +|
T Consensus 135 ~~~LGID~GSTtTK~VLm~----------d~~~I~~~~~~~t~g---~p~-----~~~~l~~~le~l~~~~~~I~~--~~ 194 (396)
T COG1924 135 MYTLGIDSGSTTTKAVLME----------DGKEILYGFYVSTKG---RPI-----AEKALKEALEELGEKLEEILG--LG 194 (396)
T ss_pred cEEEEEecCCcceeEEEEe----------CCCeEEEEEEEcCCC---Chh-----HHHHHHHHHHHcccChheeee--ee
Confidence 3999999999999999998 566554544443321 222 256677777787776555554 68
Q ss_pred ccCCCChhhHHHHH-----HhhcHHH---------------HHHHHHHHHHHhhcCCCC-----------CchhHHHHHH
Q 023529 102 VSGVNHPTDQQRIL-----NWLSGYG---------------IAAQALTAVIRAYDGRGP-----------DTMLTSNILS 150 (281)
Q Consensus 102 ~~G~~~~~~~~~l~-----~~~sg~~---------------iG~~~l~~~~~~~dg~~~-----------~~~l~~~~~~ 150 (281)
+.|+........+. ...++.. ||.+=.. ++...||... ++.+...+.+
T Consensus 195 ~TGYGR~~v~~~~~aD~~~~Ei~ah~kgA~~f~p~~dtIiDIGGQD~K-~i~i~dG~v~df~mN~~CAAGtGrFLE~~A~ 273 (396)
T COG1924 195 VTGYGRNLVGAALGADKVVVEISAHAKGARYFAPDVDTVIDIGGQDSK-VIKLEDGKVDDFTMNDKCAAGTGRFLEVIAR 273 (396)
T ss_pred eecccHHHhhhhhcCCcceeeeehhHHHHHHhCCCCcEEEEecCccee-EEEEeCCeeeeeEeccccccccchHHHHHHH
Confidence 89986543221110 0001211 3332211 1122344331 2234455556
Q ss_pred hcCCCChhhHHHHhccCCChHHhhcch-----HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHHHcccCCCCCCCCc
Q 023529 151 TLELSSPDELIGWTYVDPSWARIAALV-----PVVVSCAEAGDEVANKILQDSVEELALSVKA-VVQRLSLSGEDGKHSF 224 (281)
Q Consensus 151 ~~~~~s~~~l~~~~~~~~~~~~~a~~a-----~~v~~~A~~GD~~A~~il~~aa~~l~~~i~~-lv~~l~~~~~~~~~p~ 224 (281)
.+++ +.+++-..+.+...+..+...+ .+|..+-.+|-+ ..+|+.-..+-+++.+.. +++.++ |.
T Consensus 274 ~Lgv-~v~E~~~~A~~~~~~v~i~S~CaVF~eSevi~~~~~G~~-~EdI~AGl~~Sv~~~v~~~~~~~~~--------i~ 343 (396)
T COG1924 274 RLGV-DVEELGKLALKATPPVKINSRCAVFAESEVISALAEGAS-PEDILAGLAYSVAENVAEKVIKRVD--------IE 343 (396)
T ss_pred HhCC-CHHHHHHHHhcCCCCcccCCeeEEEehHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHHHhhccC--------CC
Confidence 6664 5666655444332212232221 345555555643 346777778888888777 888888 33
Q ss_pred c-EEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeC---CCCChhHHHHHHHHhhh
Q 023529 225 P-LVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIR---PKVEPAVGAALLAWNSF 277 (281)
Q Consensus 225 ~-IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~---~~~~~~~GAa~la~~~~ 277 (281)
. ||+-||+..+.. +...+...+.. ++.. ++..+++||++++.+..
T Consensus 344 ~~iv~~GGva~n~a---v~~ale~~lg~-----~V~vP~~~ql~GAiGAAL~a~~~~ 392 (396)
T COG1924 344 EPIVLQGGVALNKA---VVRALEDLLGR-----KVIVPPYAQLMGAIGAALIAKEVY 392 (396)
T ss_pred CCEEEECcchhhHH---HHHHHHHHhCC-----eeecCCccchhhHHHHHHHHhhhh
Confidence 3 999999997643 55566555553 2333 34568999999998765
No 25
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=98.78 E-value=1.4e-07 Score=87.69 Aligned_cols=119 Identities=19% Similarity=0.182 Sum_probs=76.6
Q ss_pred hHHHHHHhcCCCChhhHHHHhccCCChHHhhcc----h-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcccCCC
Q 023529 144 LTSNILSTLELSSPDELIGWTYVDPSWARIAAL----V-PVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGE 218 (281)
Q Consensus 144 l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~a~~----a-~~v~~~A~~GD~~A~~il~~aa~~l~~~i~~lv~~l~~~~~ 218 (281)
+...+...+++ +.+++-....+...+..++.. + .+|..+..+|-+.. +|+.-..+.++.-+.+++..+.
T Consensus 306 FLE~mA~~Lgi-~leEl~~lA~~a~~pv~ISS~CtVFAESEVIslla~G~~re-DIaAGL~~SIA~Rv~s~l~r~~---- 379 (432)
T TIGR02259 306 YLGYIADEMNM-GLHELGPLAMKSSKPARINSTCTVFAGAELRDRLALGDKRE-DILAGLHRAIILRAISIISRSG---- 379 (432)
T ss_pred HHHHHHHHcCC-CHHHHHHHHhcCCCCCCcCCcceEEehHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHhccc----
Confidence 44455566664 666666654433222233322 2 35777788887654 7777777888888888877763
Q ss_pred CCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeCC---CCChhHHHHHHH
Q 023529 219 DGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRP---KVEPAVGAALLA 273 (281)
Q Consensus 219 ~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~~---~~~~~~GAa~la 273 (281)
+...+|++.||+..+.. +...+.+.|....+..++..| +..+++||++.|
T Consensus 380 --~i~~~VvftGGvA~N~g---vv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 380 --GITDQFTFTGGVAKNEA---AVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred --CCCCCEEEECCccccHH---HHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 11357999999997754 788898888765554555444 455788888753
No 26
>PLN02914 hexokinase
Probab=98.51 E-value=6.5e-05 Score=72.60 Aligned_cols=84 Identities=18% Similarity=0.179 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCCC--CCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhC-C----CceeeCC
Q 023529 189 EVANKILQDSVEELALSVKAVVQRLSLSGE--DGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDY-P----GAVPIRP 261 (281)
Q Consensus 189 ~~A~~il~~aa~~l~~~i~~lv~~l~~~~~--~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~-p----~~~i~~~ 261 (281)
..|..|.+++|+..|-+++.+++..+..+. ...++..|-+-||++++.+. |.+.+++.+++.. + .+.+...
T Consensus 395 ~i~~~V~~RAArL~Aa~iaail~k~~~~~~~~~~~~~~~VavDGSv~~~~p~--f~~~l~~~l~ellg~~~~~~i~i~~a 472 (490)
T PLN02914 395 EVCDTIVKRGGRLAGAGIVGILEKMEEDSKGMIFGKRTVVAMDGGLYEKYPQ--YRRYMQDAVTELLGLELSKNIAIEHT 472 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCceEEEEEeCchhhcCcc--HHHHHHHHHHHHhCcccCCcEEEEEc
Confidence 367788899999999999999998773210 01135789999999999873 8999999998875 2 3566677
Q ss_pred CCChhHHHHHHHH
Q 023529 262 KVEPAVGAALLAW 274 (281)
Q Consensus 262 ~~~~~~GAa~la~ 274 (281)
.+..-+|||++|.
T Consensus 473 ~DGSGvGAAl~AA 485 (490)
T PLN02914 473 KDGSGIGAALLAA 485 (490)
T ss_pred cCchHHHHHHHHH
Confidence 8889999999985
No 27
>PRK00047 glpK glycerol kinase; Provisional
Probab=98.39 E-value=1.2e-06 Score=85.26 Aligned_cols=77 Identities=22% Similarity=0.219 Sum_probs=63.2
Q ss_pred CCcEEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecC------CCCCccCCHHHHHHHHHHHHHHHHHHcCCCcc
Q 023529 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG------CSNHNSVGEDAARETIEKVMADALLKSGSNRS 93 (281)
Q Consensus 20 ~~~~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~------~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~ 93 (281)
|..|+||||+|+|++|++++|. +|+++.....+ ...+.+.+++.+++.+.+.+++++++++.++.
T Consensus 3 m~~~~lgiD~GTts~Ka~l~d~---------~g~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~ 73 (498)
T PRK00047 3 MKKYILALDQGTTSSRAIIFDH---------DGNIVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAKAGISPD 73 (498)
T ss_pred ccCEEEEEecCCCceEEEEECC---------CCCEEEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcCCChh
Confidence 5579999999999999999995 99999886532 22333468999999999999999999888878
Q ss_pred ccceeEEcccCC
Q 023529 94 AVRAVCLAVSGV 105 (281)
Q Consensus 94 ~i~~Igig~~G~ 105 (281)
+|.+||+..-|.
T Consensus 74 ~I~~Igis~~~~ 85 (498)
T PRK00047 74 QIAAIGITNQRE 85 (498)
T ss_pred HeeEEEEecCcc
Confidence 899987776654
No 28
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=98.35 E-value=4.1e-05 Score=68.64 Aligned_cols=91 Identities=15% Similarity=0.021 Sum_probs=66.3
Q ss_pred HHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhCC--
Q 023529 178 PVVVSCAEA-GDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYP-- 254 (281)
Q Consensus 178 ~~v~~~A~~-GD~~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p-- 254 (281)
.+|.++|.+ +|+.|++.++-...+||....+++..|.= -.-|.|.||++..--+++-...|+++...+-|
T Consensus 220 ~~It~~al~g~d~~a~~tl~lF~~~lG~~AGdlAL~lga-------rGGVyiaGGI~pril~~l~~s~Fr~~FedKGr~s 292 (320)
T COG0837 220 AAITERALAGGDALARETLSLFCAILGRVAGDLALTLGA-------RGGVYIAGGIVPRILEALKASGFRARFEDKGRMS 292 (320)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhHHhHHHHhhc-------cCcEEEcCCchHhHHHHHhcchHHHHhhhcCchH
Confidence 578888888 79999999999999999999999999883 23688999988543222133555555554421
Q ss_pred ------CceeeCCCCChhHHHHHHHHh
Q 023529 255 ------GAVPIRPKVEPAVGAALLAWN 275 (281)
Q Consensus 255 ------~~~i~~~~~~~~~GAa~la~~ 275 (281)
.+.++....+++.||+..+.+
T Consensus 293 a~l~~IPV~vi~~~~~gL~Gaa~~~~~ 319 (320)
T COG0837 293 AYLADIPVYVILHPQPGLLGAAAALRQ 319 (320)
T ss_pred HHHhhCCEEEEecCCchHHHHHHHhcC
Confidence 244555678899999987643
No 29
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=98.32 E-value=2.6e-06 Score=75.05 Aligned_cols=74 Identities=22% Similarity=0.286 Sum_probs=61.1
Q ss_pred EEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCC------CCccCCHHHHHHHHHHHHHHHHHHcCCCccccc
Q 023529 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSAVR 96 (281)
Q Consensus 23 ~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~ 96 (281)
|+||||+|.|++|++++|. +|+++.....+.. ...+.+++++++.+.+.+++++++.+.+..+|.
T Consensus 1 y~lgiDiGTts~K~~l~d~---------~g~iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~I~ 71 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDE---------DGKIVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQAGIDPEQIK 71 (245)
T ss_dssp EEEEEEECSSEEEEEEEET---------TSCEEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHHCTSCGGGEE
T ss_pred CEEEEEEcccceEEEEEeC---------CCCEEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhhcCcccceeE
Confidence 7999999999999999995 9999988765421 222468999999999999999999988889999
Q ss_pred eeEEcccCC
Q 023529 97 AVCLAVSGV 105 (281)
Q Consensus 97 ~Igig~~G~ 105 (281)
+|++..-|.
T Consensus 72 aI~is~~~~ 80 (245)
T PF00370_consen 72 AIGISGQGH 80 (245)
T ss_dssp EEEEEE-SS
T ss_pred EEEeccccC
Confidence 988877664
No 30
>PTZ00107 hexokinase; Provisional
Probab=98.31 E-value=0.00031 Score=67.65 Aligned_cols=80 Identities=16% Similarity=0.103 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhC-C---CceeeCCCCCh
Q 023529 190 VANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDY-P---GAVPIRPKVEP 265 (281)
Q Consensus 190 ~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~-p---~~~i~~~~~~~ 265 (281)
.|..|.+++|+..|-+++.+++..+. ...+..|.+-||++++.+. |.+.+++.+++.. | .+.+....+..
T Consensus 376 i~~~V~~RAA~L~Aa~iaail~k~~~----~~~~~~VgvDGSv~~~~p~--f~~~~~~~l~~ll~~~~~~v~l~~a~DGS 449 (464)
T PTZ00107 376 ICELVRGRAAQLAAAFIAAPAKKTRT----VQGKATVAIDGSVYVKNPW--FRRLLQEYINSILGPDAGNVVFYLADDGS 449 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC----CCCceEEEEeCcceecCcc--HHHHHHHHHHHHhCCCCCcEEEEEccCch
Confidence 67789999999999999999998873 1236889999999999873 9999999999865 3 35666678889
Q ss_pred hHHHHHHHHh
Q 023529 266 AVGAALLAWN 275 (281)
Q Consensus 266 ~~GAa~la~~ 275 (281)
.+|||..|.-
T Consensus 450 g~GAAl~AA~ 459 (464)
T PTZ00107 450 GKGAAIIAAM 459 (464)
T ss_pred HHHHHHHHHH
Confidence 9999998864
No 31
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=98.24 E-value=5.1e-06 Score=81.35 Aligned_cols=76 Identities=18% Similarity=0.170 Sum_probs=62.1
Q ss_pred CCcEEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCC--------CCCccCCHHHHHHHHHHHHHHHHHHcCCC
Q 023529 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGC--------SNHNSVGEDAARETIEKVMADALLKSGSN 91 (281)
Q Consensus 20 ~~~~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~--------~~~~~~~~~~~~~~i~~~i~~~l~~~g~~ 91 (281)
||.|+||||+|+|.+|++++|. +|+++.....+. ....+.+++++++.+.+.+++++++++.+
T Consensus 1 ~m~~~lgID~GTts~Ka~l~d~---------~G~~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~~~~~ 71 (520)
T PRK10939 1 SMSYLMALDAGTGSIRAVIFDL---------NGNQIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQKAGIP 71 (520)
T ss_pred CCcEEEEEecCCCceEEEEECC---------CCCEEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHHcCCC
Confidence 4579999999999999999996 899998774431 12334688999999999999999988877
Q ss_pred ccccceeEEcccC
Q 023529 92 RSAVRAVCLAVSG 104 (281)
Q Consensus 92 ~~~i~~Igig~~G 104 (281)
..+|.+|++...+
T Consensus 72 ~~~I~aI~~s~~~ 84 (520)
T PRK10939 72 ASDIAAVSATSMR 84 (520)
T ss_pred ccceEEEEEECCc
Confidence 7789998877554
No 32
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=98.22 E-value=5e-06 Score=80.88 Aligned_cols=75 Identities=21% Similarity=0.222 Sum_probs=61.9
Q ss_pred cEEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCC------CCccCCHHHHHHHHHHHHHHHHHHcCCCcccc
Q 023529 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSAV 95 (281)
Q Consensus 22 ~~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i 95 (281)
.|+||||+|+|++|++++|. +|+++...+.+.. ...+.+++.+++.+.+.+++++.+.++++.+|
T Consensus 1 ~~~lgiDiGtt~iKa~l~d~---------~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~i 71 (493)
T TIGR01311 1 PYILAIDQGTTSSRAIVFDK---------DGNIVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAKAGIKPDDI 71 (493)
T ss_pred CeEEEEecCCCceEEEEECC---------CCCEEEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCCChhhe
Confidence 48999999999999999995 9999988776422 22235789999999999999999998887889
Q ss_pred ceeEEcccCC
Q 023529 96 RAVCLAVSGV 105 (281)
Q Consensus 96 ~~Igig~~G~ 105 (281)
.+||++.-|.
T Consensus 72 ~aIgis~~~~ 81 (493)
T TIGR01311 72 AAIGITNQRE 81 (493)
T ss_pred eEEEEecCcc
Confidence 9988877654
No 33
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=98.19 E-value=4.4e-06 Score=63.05 Aligned_cols=63 Identities=13% Similarity=0.107 Sum_probs=45.4
Q ss_pred EEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCccccceeEEcc
Q 023529 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (281)
Q Consensus 23 ~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~Igig~ 102 (281)
.++|||+|||+++++++|. +|+++...+.++.. +.++.++.+.+.+ .+. ++.+|+||+
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~---------~g~~~~~~~~~~~~----~~~~~~~~l~~~i----~~~-----~~~~i~Ig~ 59 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDE---------TGKLADPLEVIPRT----NKEADAARLKKLI----KKY-----QPDLIVIGL 59 (99)
T ss_pred cEEEEccCCCeEEEEEECC---------CCCEecCEEEEEec----CcchHHHHHHHHH----HHh-----CCCEEEEeC
Confidence 4799999999999999994 89988776665421 2244444544444 432 467999999
Q ss_pred cCCCC
Q 023529 103 SGVNH 107 (281)
Q Consensus 103 ~G~~~ 107 (281)
||+++
T Consensus 60 pg~v~ 64 (99)
T smart00732 60 PLNMN 64 (99)
T ss_pred CcCCC
Confidence 99975
No 34
>PRK04123 ribulokinase; Provisional
Probab=98.19 E-value=6.4e-06 Score=81.14 Aligned_cols=77 Identities=22% Similarity=0.236 Sum_probs=62.4
Q ss_pred CCcEEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCC------------CCccCCHHHHHHHHHHHHHHHHHH
Q 023529 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------------NHNSVGEDAARETIEKVMADALLK 87 (281)
Q Consensus 20 ~~~~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~------------~~~~~~~~~~~~~i~~~i~~~l~~ 87 (281)
|+.|+||||+|.|++|++++|. .+|+++.+...+.. .+.+++++++++.+.+.+++++++
T Consensus 1 ~~~~~lgiD~GTts~Ka~l~d~--------~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~~ 72 (548)
T PRK04123 1 MMAYVIGLDFGTDSVRALLVDC--------ATGEELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLKE 72 (548)
T ss_pred CCcEEEEEecCCCceEEEEEEC--------CCCcEeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999993 28999887755422 123467889999999999999999
Q ss_pred cCCCccccceeEEcccC
Q 023529 88 SGSNRSAVRAVCLAVSG 104 (281)
Q Consensus 88 ~g~~~~~i~~Igig~~G 104 (281)
++.+..+|.+||+..-|
T Consensus 73 ~~~~~~~I~aIgis~~~ 89 (548)
T PRK04123 73 AGVDPAAVVGIGVDFTG 89 (548)
T ss_pred cCCChhhEEEEEEeccc
Confidence 88877789998777654
No 35
>PLN02405 hexokinase
Probab=98.19 E-value=0.00015 Score=70.20 Aligned_cols=85 Identities=16% Similarity=0.183 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCC--CCCCccEEEEcCcccCcchhhhHHHHHHHHHhhCC-----CceeeCCC
Q 023529 190 VANKILQDSVEELALSVKAVVQRLSLSGED--GKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYP-----GAVPIRPK 262 (281)
Q Consensus 190 ~A~~il~~aa~~l~~~i~~lv~~l~~~~~~--~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p-----~~~i~~~~ 262 (281)
.|..|.+++|+..|-+++.+++..+..... ..++..|-+-||+.++++. |.+.+++.+++..+ .+.+....
T Consensus 398 i~~~V~~RAArL~Aa~iaail~k~~~~~~~~~~~~~~~VavDGsvye~yp~--f~~~~~~~l~ell~~~~~~~v~l~~a~ 475 (497)
T PLN02405 398 LCNIVATRGARLSAAGIYGILKKLGRDTVKDGEKQKSVIAMDGGLFEHYTE--FSKCMESTLKELLGEEVSESIEVEHSN 475 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcceEEEEeCchhhcCcC--HHHHHHHHHHHHhCcccCceEEEEEec
Confidence 566789999999999999999998742100 0124679999999999883 89999999998752 35666678
Q ss_pred CChhHHHHHHHHhh
Q 023529 263 VEPAVGAALLAWNS 276 (281)
Q Consensus 263 ~~~~~GAa~la~~~ 276 (281)
+...+|||++|.-.
T Consensus 476 DGSGvGAAl~AA~~ 489 (497)
T PLN02405 476 DGSGIGAALLAASH 489 (497)
T ss_pred CchHHHHHHHHHHH
Confidence 88999999998643
No 36
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=98.16 E-value=9.6e-06 Score=79.13 Aligned_cols=77 Identities=22% Similarity=0.207 Sum_probs=64.5
Q ss_pred CCcEEEEEecCccceeeeeeecccCCCCCCCC-CCeEEEEecCCC------CCccCCHHHHHHHHHHHHHHHHHHcCCCc
Q 023529 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDP-LPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNR 92 (281)
Q Consensus 20 ~~~~viGVD~GgT~~~~~l~d~~~~~~~~~~~-g~il~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~l~~~g~~~ 92 (281)
|+.|+||||+|+|.+|++++|. + |+++...+.... .+.+.+++++++.+.+++++++++..++.
T Consensus 2 ~~~~~lgIDiGTt~~Kavl~d~---------~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~~~~~~ 72 (502)
T COG1070 2 MMKYVLGIDIGTTSVKAVLFDE---------DGGEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEESKIDP 72 (502)
T ss_pred CccEEEEEEcCCCcEEEEEEeC---------CCCeEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHhcccCh
Confidence 6789999999999999999996 6 888887766522 12246899999999999999999998888
Q ss_pred cccceeEEcccCC
Q 023529 93 SAVRAVCLAVSGV 105 (281)
Q Consensus 93 ~~i~~Igig~~G~ 105 (281)
.+|.+|+++.-|.
T Consensus 73 ~~I~aI~is~~~~ 85 (502)
T COG1070 73 DAIAAIGISGQGH 85 (502)
T ss_pred hhceEEEEecccc
Confidence 8899988777665
No 37
>PLN02362 hexokinase
Probab=98.15 E-value=0.00031 Score=68.32 Aligned_cols=84 Identities=11% Similarity=0.158 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCC------------CCCCccEEEEcCcccCcchhhhHHHHHHHHHhhCC---
Q 023529 190 VANKILQDSVEELALSVKAVVQRLSLSGED------------GKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYP--- 254 (281)
Q Consensus 190 ~A~~il~~aa~~l~~~i~~lv~~l~~~~~~------------~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p--- 254 (281)
.|..|.+++|+..|-+++.+++..+..... +.++..|-+-||+.++++. |.+.+++.+++..+
T Consensus 397 i~~~V~~RaArL~Aa~iaail~k~~~~~~~~~~~~~~~~~~~~~~~~~VavDGsvye~yp~--f~~~~~~~l~ell~~~~ 474 (509)
T PLN02362 397 ICDVVTRRAARLAAAGIVGILKKIGRDGSGGITSGRSRSDIQIMRRTVVAVEGGLYTNYTM--FREYLHEALNEILGEDV 474 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccCCCceEEEEEeCchhhcCcC--HHHHHHHHHHHHhCccc
Confidence 677889999999999999999987622110 0124689999999999873 89999999998752
Q ss_pred --CceeeCCCCChhHHHHHHHHh
Q 023529 255 --GAVPIRPKVEPAVGAALLAWN 275 (281)
Q Consensus 255 --~~~i~~~~~~~~~GAa~la~~ 275 (281)
.+.+....+...+|||++|.-
T Consensus 475 ~~~v~i~~a~DGSgvGAAl~AA~ 497 (509)
T PLN02362 475 AQHVILKATEDGSGIGSALLAAS 497 (509)
T ss_pred CceEEEEEccCchHHHHHHHHHH
Confidence 345666788899999999864
No 38
>PLN02596 hexokinase-like
Probab=98.15 E-value=0.00079 Score=65.18 Aligned_cols=80 Identities=14% Similarity=0.164 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhCC-----CceeeCCCCC
Q 023529 190 VANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYP-----GAVPIRPKVE 264 (281)
Q Consensus 190 ~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p-----~~~i~~~~~~ 264 (281)
.|..|..++|+..|-+++.+++..+.. ..++..|-+-||+.++.+. |.+.+++.+++..+ .+.+...++.
T Consensus 398 i~~~V~~RAArL~Aa~iaail~k~g~~---~~~~~~VavDGSvye~~p~--f~~~l~~al~ellg~~~~~~i~~~~s~DG 472 (490)
T PLN02596 398 VCDIVAERGARLAGAGIVGIIKKLGRI---ENKKSVVTVEGGLYEHYRV--FRNYLHSSVWEMLGSELSDNVVIEHSHGG 472 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC---CCCceEEEEeCcceeeCcC--HHHHHHHHHHHHhCcccCCcEEEEEccCc
Confidence 577889999999999999999997621 1235789999999999873 89999999998752 3555567888
Q ss_pred hhHHHHHHHH
Q 023529 265 PAVGAALLAW 274 (281)
Q Consensus 265 ~~~GAa~la~ 274 (281)
.-.|||++|.
T Consensus 473 SG~GAAl~AA 482 (490)
T PLN02596 473 SGAGALFLAA 482 (490)
T ss_pred hhHHHHHHHH
Confidence 8999999885
No 39
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=98.12 E-value=1e-05 Score=79.59 Aligned_cols=72 Identities=19% Similarity=0.203 Sum_probs=59.9
Q ss_pred EEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecC------CCCCccCCHHHHHHHHHHHHHHHHHHcCCCccccc
Q 023529 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG------CSNHNSVGEDAARETIEKVMADALLKSGSNRSAVR 96 (281)
Q Consensus 23 ~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~------~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~ 96 (281)
++||||+|+|++|++++|. +|+++.+...+ ...+.+.+++++++.+.+.+++++++.+.+..+|.
T Consensus 1 ~~lgID~GTts~Ka~l~d~---------~G~i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~~~~~~~~I~ 71 (541)
T TIGR01315 1 HYIGVDVGTGSARACIIDS---------TGDILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAESKVDPNSVK 71 (541)
T ss_pred CEEEEEecCcCEEEEEEcC---------CCCEEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHHcCCChhheE
Confidence 4799999999999999995 99999876532 12334568999999999999999999888877899
Q ss_pred eeEEccc
Q 023529 97 AVCLAVS 103 (281)
Q Consensus 97 ~Igig~~ 103 (281)
+||++..
T Consensus 72 ~Igis~~ 78 (541)
T TIGR01315 72 GIGFDAT 78 (541)
T ss_pred EEEeccc
Confidence 9888764
No 40
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=98.09 E-value=4.9e-06 Score=69.58 Aligned_cols=66 Identities=14% Similarity=0.247 Sum_probs=57.3
Q ss_pred EEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCccccceeEEcccCC
Q 023529 26 GLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGV 105 (281)
Q Consensus 26 GVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~Igig~~G~ 105 (281)
|||+|+|+++++++|+ +|+++.+.+.+.. .+++++++.+.+.+++++.+.+.. +|||++||+
T Consensus 1 gidig~~~i~~~l~d~---------~g~ii~~~~~~~~----~~~~~~~~~l~~~i~~~~~~~~~~-----gIgi~~pG~ 62 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDL---------DGEIIYSESIPTP----TSPEELLDALAELIERLLADYGRS-----GIGISVPGI 62 (179)
T ss_dssp EEEEESSEEEEEEEET---------TSCEEEEEEEEHH----SSHHHHHHHHHHHHHHHHHHHTCE-----EEEEEESSE
T ss_pred CEEECCCEEEEEEECC---------CCCEEEEEEEECC----CCHHHHHHHHHHHHHHHHhhcccc-----cEEEecccc
Confidence 7999999999999998 9999999888753 377999999999999999887543 999999999
Q ss_pred CChh
Q 023529 106 NHPT 109 (281)
Q Consensus 106 ~~~~ 109 (281)
++++
T Consensus 63 v~~~ 66 (179)
T PF00480_consen 63 VDSE 66 (179)
T ss_dssp EETT
T ss_pred CcCC
Confidence 7544
No 41
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=98.06 E-value=1.8e-05 Score=77.21 Aligned_cols=75 Identities=19% Similarity=0.154 Sum_probs=60.4
Q ss_pred cEEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCC------CCCccCCHHHHHHHHHHHHHHHHHHcCCCcc--
Q 023529 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGC------SNHNSVGEDAARETIEKVMADALLKSGSNRS-- 93 (281)
Q Consensus 22 ~~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~------~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~-- 93 (281)
.|+||||+|+|++|++++|. +|++++....+. .+..+.+++++++.+.+++++++++.+.++.
T Consensus 2 ~~~lgiDiGTts~Ka~l~d~---------~G~~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~~ 72 (504)
T PTZ00294 2 KYIGSIDQGTTSTRFIIFDE---------KGNVVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKKLREKGPSF 72 (504)
T ss_pred cEEEEEecCCCceEEEEECC---------CCCEEEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcCCCCccC
Confidence 48999999999999999995 899987765542 2233467899999999999999998876665
Q ss_pred ccceeEEcccCC
Q 023529 94 AVRAVCLAVSGV 105 (281)
Q Consensus 94 ~i~~Igig~~G~ 105 (281)
+|.+||+..-|.
T Consensus 73 ~I~aIgis~q~~ 84 (504)
T PTZ00294 73 KIKAIGITNQRE 84 (504)
T ss_pred ceEEEEeecCcc
Confidence 788887776553
No 42
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=98.01 E-value=1.5e-05 Score=76.55 Aligned_cols=76 Identities=21% Similarity=0.214 Sum_probs=66.2
Q ss_pred CCcEEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecC------CCCCccCCHHHHHHHHHHHHHHHHHHcCCCcc
Q 023529 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG------CSNHNSVGEDAARETIEKVMADALLKSGSNRS 93 (281)
Q Consensus 20 ~~~~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~------~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~ 93 (281)
|+.|+||||+|.-+-|++++|. .+|+.+++...| ..++.+..+.+.++.+..+++++++++++++.
T Consensus 1 ~~~~~iGvDvGTgSaRA~v~D~--------~~G~~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~agv~~~ 72 (544)
T COG1069 1 MMAYVIGVDVGTGSARAGVFDC--------QTGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAKAGVDPA 72 (544)
T ss_pred CccEEEEEeecCCceeEEEEEc--------CCCcchhhcccceeccccCccccccCHHHHHHHHHHHHHHHHHHcCCChh
Confidence 6789999999999999999998 469998887665 34555578899999999999999999999999
Q ss_pred ccceeEEccc
Q 023529 94 AVRAVCLAVS 103 (281)
Q Consensus 94 ~i~~Igig~~ 103 (281)
+|++||+-..
T Consensus 73 ~V~gIGvDaT 82 (544)
T COG1069 73 DVVGIGVDAT 82 (544)
T ss_pred HeeEEEEcce
Confidence 9999988765
No 43
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=98.00 E-value=2.3e-05 Score=77.06 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=60.4
Q ss_pred EEEEEecCccceeeeeee-cccCCCCCCCCCCeEEEEecCC-----------------CCCccCCHHHHHHHHHHHHHHH
Q 023529 23 VILGLDGGTTSTVCICMP-VISMSDSLPDPLPVLARAAAGC-----------------SNHNSVGEDAARETIEKVMADA 84 (281)
Q Consensus 23 ~viGVD~GgT~~~~~l~d-~~~~~~~~~~~g~il~~~~~~~-----------------~~~~~~~~~~~~~~i~~~i~~~ 84 (281)
|+||||+|+|.+|++++| . +|++++....+. ....+++++++++.+.++++++
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~---------~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~ 72 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVA---------TGEEIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTV 72 (536)
T ss_pred eEEEEecCCCceEEEEEECC---------CCcEeeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHH
Confidence 799999999999999999 7 899997765432 1234567999999999999999
Q ss_pred HHHcCCCccccceeEEcccC
Q 023529 85 LLKSGSNRSAVRAVCLAVSG 104 (281)
Q Consensus 85 l~~~g~~~~~i~~Igig~~G 104 (281)
+++.+.+..+|.+|++...+
T Consensus 73 ~~~~~~~~~~I~aI~~s~q~ 92 (536)
T TIGR01234 73 LAELGVDPADVVGIGVDFTA 92 (536)
T ss_pred HHHcCCCHHHEEEEEEecCc
Confidence 99988887789998776653
No 44
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=98.00 E-value=2.5e-05 Score=76.23 Aligned_cols=73 Identities=15% Similarity=0.204 Sum_probs=59.1
Q ss_pred EEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCC------CCccCCHHHHHHHHHHHHHHHHHHcCCCccccc
Q 023529 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSAVR 96 (281)
Q Consensus 23 ~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~ 96 (281)
|+||||+|+|++|++++|. +|+++.+...+.. ...+.+++++++.+.+.+++++++.+.+ .+|.
T Consensus 1 ~~lgiDiGtt~~K~~l~d~---------~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~-~~I~ 70 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEE---------NGKIVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSINLEDE-DEIL 70 (505)
T ss_pred CEEEEeccccceEEEEEcC---------CCCEEEEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHhCCCc-CceE
Confidence 6899999999999999995 9999988876321 1234578999999999999999887665 6788
Q ss_pred eeEEcccCC
Q 023529 97 AVCLAVSGV 105 (281)
Q Consensus 97 ~Igig~~G~ 105 (281)
+||++.-|.
T Consensus 71 ~Igis~~~~ 79 (505)
T TIGR01314 71 FVSFSTQMH 79 (505)
T ss_pred EEEEecccc
Confidence 988877653
No 45
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=97.99 E-value=1.6e-05 Score=76.85 Aligned_cols=73 Identities=15% Similarity=0.250 Sum_probs=62.2
Q ss_pred EEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCC------CccCCHHHHHHHHHHHHHHHHHHcCCCcccccee
Q 023529 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN------HNSVGEDAARETIEKVMADALLKSGSNRSAVRAV 98 (281)
Q Consensus 25 iGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~------~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~I 98 (281)
||||+|.|+++++++|+ +|+++.+...+... ..+.+++++++.+.+.+++++++.+.++.+|.+|
T Consensus 1 lgIDiGtt~ik~~l~d~---------~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~l~~~i~~~~~~~~~~~~~I~gI 71 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDE---------QGEVIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQASEMGQDIKGI 71 (481)
T ss_pred CceeecCcceEEEEECC---------CCCEEEEEeecccccCCCCCCeeeCHHHHHHHHHHHHHHHHHhcCCCcccEEEE
Confidence 68999999999999996 99999888766321 1135788999999999999999998888889999
Q ss_pred EEc--ccCCC
Q 023529 99 CLA--VSGVN 106 (281)
Q Consensus 99 gig--~~G~~ 106 (281)
|++ .+|++
T Consensus 72 gvs~~~~g~v 81 (481)
T TIGR01312 72 GISGQMHGLV 81 (481)
T ss_pred EEecCCceeE
Confidence 999 88876
No 46
>PLN02295 glycerol kinase
Probab=97.96 E-value=3e-05 Score=75.83 Aligned_cols=73 Identities=19% Similarity=0.162 Sum_probs=58.5
Q ss_pred EEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCC------CCccCCHHHHHHHHHHHHHHHHHHcCCCccc--
Q 023529 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSA-- 94 (281)
Q Consensus 23 ~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~-- 94 (281)
|+||||+|+|++|++++|. +|++++....+.. .+.+.+++++++.+.+++++++++.+.++.+
T Consensus 1 ~vlgID~GTts~Ka~l~d~---------~G~~~~~~~~~~~~~~~~~G~~Eqdp~~~w~~~~~~i~~~~~~~~~~~~~i~ 71 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDR---------DARPVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEKAAAKGHNVD 71 (512)
T ss_pred CEEEEecCCCceEEEEECC---------CCCEEEEEeecccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 6899999999999999996 9999977655421 3345689999999999999999998877766
Q ss_pred --cceeEEcccC
Q 023529 95 --VRAVCLAVSG 104 (281)
Q Consensus 95 --i~~Igig~~G 104 (281)
|.+||+.-.+
T Consensus 72 ~~i~aIg~s~q~ 83 (512)
T PLN02295 72 SGLKAIGITNQR 83 (512)
T ss_pred cceEEEEEecCc
Confidence 5776655543
No 47
>PRK13317 pantothenate kinase; Provisional
Probab=97.87 E-value=0.00071 Score=61.05 Aligned_cols=75 Identities=16% Similarity=0.120 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEc-CcccCcchhhhHHHHHHHHHhhCCCceeeC---CCCC
Q 023529 189 EVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVG-GVLEANRRWDIGREVVKCILRDYPGAVPIR---PKVE 264 (281)
Q Consensus 189 ~~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgG-gv~~~~~~~~l~~~i~~~l~~~~p~~~i~~---~~~~ 264 (281)
..|..++...++.++.....+.+..+ -..|++.| ++..+ + .+.+.+.+.++.. ..++.. +++.
T Consensus 197 DIaasl~~~v~~~I~~lA~~~ar~~~--------~~~Ivf~G~gla~n-~--~l~~~l~~~l~~~--~~~~~~p~~~~~~ 263 (277)
T PRK13317 197 DILAGVIGLVGEVITTLSIQAAREKN--------IENIVYIGSTLTNN-P--LLQEIIESYTKLR--NCTPIFLENGGYS 263 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC--------CCeEEEECcccccC-H--HHHHHHHHHHhcC--CceEEecCCCchh
Confidence 47788888887777777666666666 34788888 56654 4 2777787776532 223333 4567
Q ss_pred hhHHHHHHHHhh
Q 023529 265 PAVGAALLAWNS 276 (281)
Q Consensus 265 ~~~GAa~la~~~ 276 (281)
+++||++++.+.
T Consensus 264 gAlGAaL~a~~~ 275 (277)
T PRK13317 264 GAIGALLLATNK 275 (277)
T ss_pred HHHHHHHHhhhc
Confidence 899999988753
No 48
>PRK10331 L-fuculokinase; Provisional
Probab=97.83 E-value=8.6e-05 Score=71.81 Aligned_cols=72 Identities=21% Similarity=0.249 Sum_probs=56.6
Q ss_pred cEEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCC--------CCccCCHHHHHHHHHHHHHHHHHHcCCCcc
Q 023529 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS--------NHNSVGEDAARETIEKVMADALLKSGSNRS 93 (281)
Q Consensus 22 ~~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~--------~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~ 93 (281)
.|+||||+|+|++|++++|. +|+++.....+.. ++.+.+++++++.+.+.+++++++. ...
T Consensus 2 ~~~lgID~GTt~~Ka~l~d~---------~G~~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~~--~~~ 70 (470)
T PRK10331 2 DVILVLDCGATNVRAIAVDR---------QGKIVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSEL--TEC 70 (470)
T ss_pred ceEEEEecCCCceEEEEEcC---------CCcEEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHhC--Ccc
Confidence 38999999999999999996 9999988866521 1335688999999999999999865 234
Q ss_pred ccceeEEcccC
Q 023529 94 AVRAVCLAVSG 104 (281)
Q Consensus 94 ~i~~Igig~~G 104 (281)
+|.+|++..-+
T Consensus 71 ~I~~I~is~~~ 81 (470)
T PRK10331 71 HIRGITVTTFG 81 (470)
T ss_pred ceEEEEEeccc
Confidence 68887766543
No 49
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=97.83 E-value=5.2e-05 Score=71.94 Aligned_cols=72 Identities=22% Similarity=0.260 Sum_probs=63.1
Q ss_pred CcEEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecC------CCCCccCCHHHHHHHHHHHHHHHHHHcCCCccc
Q 023529 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG------CSNHNSVGEDAARETIEKVMADALLKSGSNRSA 94 (281)
Q Consensus 21 ~~~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~------~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~ 94 (281)
+.|++.+|-|.|++|+.+||. +|++++....+ .+.+.+++|.++++.+..++.+++.++++++.+
T Consensus 4 ~~yIlAiDqGTTssRaivfd~---------~g~iva~~q~e~~Q~yP~~GWVEhDp~eIw~~~~~~l~~a~~~~~i~~~~ 74 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDE---------DGNIVAIAQREFTQIYPQPGWVEHDPLEIWASVRSVLKEALAKAGIKPGE 74 (499)
T ss_pred ccEEEEEecCCcceeEEEECC---------CCCchhhhhhhhhhhCCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 579999999999999999995 99999776544 345667899999999999999999999999999
Q ss_pred cceeEEc
Q 023529 95 VRAVCLA 101 (281)
Q Consensus 95 i~~Igig 101 (281)
|.+|||.
T Consensus 75 iaaIGIT 81 (499)
T COG0554 75 IAAIGIT 81 (499)
T ss_pred eEEEEee
Confidence 9998764
No 50
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=97.77 E-value=0.00011 Score=71.12 Aligned_cols=72 Identities=19% Similarity=0.219 Sum_probs=56.6
Q ss_pred cEEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCC--------CCCccCCHHHHHHHHHHHHHHHHHHcCCCcc
Q 023529 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGC--------SNHNSVGEDAARETIEKVMADALLKSGSNRS 93 (281)
Q Consensus 22 ~~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~--------~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~ 93 (281)
+|++|||+|+|++|++++|. +|++++....+- ..+.+.+++++++.+.+.+++++.+ .++.
T Consensus 1 ~~ilgiD~GTss~K~~l~d~---------~g~~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~--~~~~ 69 (465)
T TIGR02628 1 EVILVLDCGATNLRAIAINR---------QGKIVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINSE--LTEK 69 (465)
T ss_pred CeEEEEecCCCcEEEEEEcC---------CCCEEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHhh--cChh
Confidence 37999999999999999995 999998776441 2233468899999999999999864 4455
Q ss_pred ccceeEEcccC
Q 023529 94 AVRAVCLAVSG 104 (281)
Q Consensus 94 ~i~~Igig~~G 104 (281)
+|.+|++..-|
T Consensus 70 ~I~aI~~s~~~ 80 (465)
T TIGR02628 70 HIRGIAVTTFG 80 (465)
T ss_pred ceEEEEEeccc
Confidence 68888776544
No 51
>PRK15027 xylulokinase; Provisional
Probab=97.75 E-value=0.0001 Score=71.51 Aligned_cols=70 Identities=16% Similarity=0.144 Sum_probs=55.3
Q ss_pred EEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCC------CCCccCCHHHHHHHHHHHHHHHHHHcCCCccccc
Q 023529 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGC------SNHNSVGEDAARETIEKVMADALLKSGSNRSAVR 96 (281)
Q Consensus 23 ~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~------~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~ 96 (281)
++||||+|+|++|++++|. +|++++....+. .+..+.+++.+++.+.+.+++++++. +..+|.
T Consensus 1 ~~lgID~GTts~Ka~l~d~---------~G~vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~--~~~~I~ 69 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNE---------QGEVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQH--SLQDVK 69 (484)
T ss_pred CEEEEEecccceEEEEEcC---------CCCEEEEEeecccccCCCCCccccCHHHHHHHHHHHHHHHHHhC--Ccccee
Confidence 5899999999999999995 899998774432 23335678899999999999999875 345788
Q ss_pred eeEEccc
Q 023529 97 AVCLAVS 103 (281)
Q Consensus 97 ~Igig~~ 103 (281)
+||+...
T Consensus 70 aI~is~q 76 (484)
T PRK15027 70 ALGIAGQ 76 (484)
T ss_pred EEEEecC
Confidence 8877543
No 52
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=97.74 E-value=0.0009 Score=60.05 Aligned_cols=78 Identities=17% Similarity=0.069 Sum_probs=51.1
Q ss_pred hcCCCcEEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCc---cCCHHHHHHHHHHHHHHHHHHcCCCcc
Q 023529 17 ESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHN---SVGEDAARETIEKVMADALLKSGSNRS 93 (281)
Q Consensus 17 ~~~~~~~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~---~~~~~~~~~~i~~~i~~~l~~~g~~~~ 93 (281)
+.+...+++|+|+|.|++++++.+. ++++++....++.... -.+.+.+...|.++++.+-...+.+
T Consensus 19 ~~~~~~~~~~iDiGSssi~~vv~~~---------~~~~~~~~~~~~~~vr~G~i~di~~a~~~i~~~~~~ae~~~g~~-- 87 (267)
T PRK15080 19 VATESPLKVGVDLGTANIVLAVLDE---------DGQPVAGALEWADVVRDGIVVDFIGAVTIVRRLKATLEEKLGRE-- 87 (267)
T ss_pred CCCCCCEEEEEEccCceEEEEEEcC---------CCCEEEEEeccccccCCCEEeeHHHHHHHHHHHHHHHHHHhCCC--
Confidence 3445779999999999999999884 6667777666543221 1245555555555555544444543
Q ss_pred ccceeEEcccCCC
Q 023529 94 AVRAVCLAVSGVN 106 (281)
Q Consensus 94 ~i~~Igig~~G~~ 106 (281)
+..+.+++|..-
T Consensus 88 -i~~v~~~vp~~~ 99 (267)
T PRK15080 88 -LTHAATAIPPGT 99 (267)
T ss_pred -cCeEEEEeCCCC
Confidence 667778888764
No 53
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=97.62 E-value=0.0019 Score=57.66 Aligned_cols=88 Identities=17% Similarity=0.116 Sum_probs=64.9
Q ss_pred ChhhHHHHhccCCCh-HHh-hcchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcc
Q 023529 156 SPDELIGWTYVDPSW-ARI-AALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVL 233 (281)
Q Consensus 156 s~~~l~~~~~~~~~~-~~~-a~~a~~v~~~A~~GD~~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~ 233 (281)
|.+++...+...... +-. ..-++.|...+++||..|+.+++..+..+++-|..+.-.|. .+|+.|+|.||++
T Consensus 234 t~~El~k~i~g~gG~~aylGT~d~~~v~~~~~~Gd~~a~~~~~AmayQVaKeIG~~savL~------G~vDaIvLTGGiA 307 (358)
T COG3426 234 TEEELLKKITGKGGLVAYLGTNDAKEVERRIEQGDEKAKLAYEAMAYQVAKEIGAMSAVLK------GKVDAIVLTGGIA 307 (358)
T ss_pred cHHHHHHHhhcCCceEEEeccchHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhhhhhcC------CCCCEEEEecchh
Confidence 566666655432210 000 11257888899999999999999999999999999999988 4599999999998
Q ss_pred cCcchhhhHHHHHHHHHhh
Q 023529 234 EANRRWDIGREVVKCILRD 252 (281)
Q Consensus 234 ~~~~~~~l~~~i~~~l~~~ 252 (281)
.... |.+.|.+++.--
T Consensus 308 ~~~~---f~~~I~~~v~~i 323 (358)
T COG3426 308 YEKL---FVDAIEDRVSWI 323 (358)
T ss_pred hHHH---HHHHHHHHHhhh
Confidence 5532 677777776653
No 54
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=97.56 E-value=0.00017 Score=60.68 Aligned_cols=65 Identities=25% Similarity=0.248 Sum_probs=52.2
Q ss_pred EEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCccccceeEEcccC
Q 023529 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (281)
Q Consensus 25 iGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~Igig~~G 104 (281)
||||.|||+|.++++|. +..++...+.+++. +....-+.+++++++.+.+.++++|..|-+|..-
T Consensus 2 igIDvGGT~TD~v~~d~---------~~~~~~~~K~~Tt~------~d~~~gi~~al~~l~~~~~~~~~~i~~v~~gTT~ 66 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDE---------DTGVVATAKVPTTP------DDPAEGILEALDALLEESGIDPSDIDRVRHGTTV 66 (176)
T ss_pred eeEecCCCcEEEEEEeC---------CCCEEEEEEeCCCC------cCHHHHHHHHHHhhhcccCCChhhCcEEEeccHH
Confidence 79999999999999994 44788898888642 3344567788888888888888889998888763
No 55
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=97.41 E-value=0.026 Score=53.35 Aligned_cols=86 Identities=20% Similarity=0.192 Sum_probs=61.6
Q ss_pred ChhhHHHHhccCCChHHh---hcchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCc
Q 023529 156 SPDELIGWTYVDPSWARI---AALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGV 232 (281)
Q Consensus 156 s~~~l~~~~~~~~~~~~~---a~~a~~v~~~A~~GD~~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv 232 (281)
+.+++...+++.+..-.+ ..-.++|.+.+++||+.|+..++-.+..+++-|..+...++ .+.+.||+.||+
T Consensus 257 s~~e~~~~l~~~sGL~g~sG~s~D~r~i~~~~~~gd~~A~la~d~~~y~i~k~Ig~~~a~l~------G~vDaivfTGGi 330 (388)
T PF00871_consen 257 SADELERLLNKESGLLGLSGISNDMREIEARIEEGDERAKLALDAFAYQIAKYIGAYAAVLE------GGVDAIVFTGGI 330 (388)
T ss_dssp -HHHHHHHHHHSSHHHHHHSSSS-HHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHT------SS-SEEEEEHHH
T ss_pred CHHHHHHHHHhccCcEeccCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhc------cCCCEEEEcccc
Confidence 566777767665421111 22358899999999999999999999999999999999995 138899999999
Q ss_pred ccCcchhhhHHHHHHHH
Q 023529 233 LEANRRWDIGREVVKCI 249 (281)
Q Consensus 233 ~~~~~~~~l~~~i~~~l 249 (281)
.++.. .+++.+.+.+
T Consensus 331 ge~~~--~vr~~~~~~l 345 (388)
T PF00871_consen 331 GENSA--LVRERICRKL 345 (388)
T ss_dssp HHHTH--HHHHHHHCTG
T ss_pred ccchH--HHHHHHHhhc
Confidence 98865 2555554443
No 56
>PRK13318 pantothenate kinase; Reviewed
Probab=97.40 E-value=0.00066 Score=60.55 Aligned_cols=63 Identities=17% Similarity=0.146 Sum_probs=47.0
Q ss_pred EEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCccccceeEEcc
Q 023529 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (281)
Q Consensus 24 viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~Igig~ 102 (281)
+++||+|+|+++++++| +|+++.+.+.++... .+++++. +.++++++..+.+..++.+|+++.
T Consensus 2 iL~IDIGnT~iK~al~d----------~g~i~~~~~~~t~~~--~~~~~~~----~~l~~l~~~~~~~~~~i~~I~iss 64 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYE----------GGKLVAHWRISTDSR--RTADEYG----VWLKQLLGLSGLDPEDITGIIISS 64 (258)
T ss_pred EEEEEECCCcEEEEEEE----------CCEEEEEEEEeCCCC--CCHHHHH----HHHHHHHHHcCCCcccCceEEEEE
Confidence 78999999999999999 688888877765433 3455544 445566666666556788999998
No 57
>PLN02669 xylulokinase
Probab=97.23 E-value=0.001 Score=65.82 Aligned_cols=71 Identities=15% Similarity=0.131 Sum_probs=54.6
Q ss_pred CcEEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCC---------CCccCCHH----------HHHHHHHHHH
Q 023529 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS---------NHNSVGED----------AARETIEKVM 81 (281)
Q Consensus 21 ~~~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~---------~~~~~~~~----------~~~~~i~~~i 81 (281)
..|+||||+|+|.+|++++|. +|++++....+.. +..+.+++ .+++.+..++
T Consensus 7 ~~~~LGiD~GT~s~Ka~l~d~---------~g~vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~l 77 (556)
T PLN02669 7 DSLFLGFDSSTQSLKATVLDS---------NLRIVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLLL 77 (556)
T ss_pred CCeEEEEecccCCeEEEEEcC---------CCCEEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHHH
Confidence 469999999999999999995 9999988776521 01123444 5669999999
Q ss_pred HHHHHHcCCCccccceeEEc
Q 023529 82 ADALLKSGSNRSAVRAVCLA 101 (281)
Q Consensus 82 ~~~l~~~g~~~~~i~~Igig 101 (281)
+++. +.+.+.++|.+|++.
T Consensus 78 ~~l~-~~~~~~~~I~aIs~s 96 (556)
T PLN02669 78 QKLA-KEKFPFHKVVAISGS 96 (556)
T ss_pred HHHH-HcCCChhhEEEEEec
Confidence 9987 567777789888766
No 58
>PRK13321 pantothenate kinase; Reviewed
Probab=97.23 E-value=0.0011 Score=59.17 Aligned_cols=65 Identities=15% Similarity=0.089 Sum_probs=45.9
Q ss_pred EEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCccccceeEEccc
Q 023529 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (281)
Q Consensus 24 viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~Igig~~ 103 (281)
+++||+|+|+++++++| +++++.+.+.++... .+.+++.+.+.+ ++++.+.+.+++.+|+++..
T Consensus 2 iL~IDIGnT~ik~gl~~----------~~~i~~~~~~~T~~~--~~~~~~~~~l~~----l~~~~~~~~~~i~~i~vssV 65 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFD----------GDRLLRSFRLPTDKS--RTSDELGILLLS----LFRHAGLDPEDIRAVVISSV 65 (256)
T ss_pred EEEEEECCCeEEEEEEE----------CCEEEEEEEEecCCC--CCHHHHHHHHHH----HHHHcCCChhhCCeEEEEee
Confidence 68999999999999999 457777777765433 355565555444 55555555567889888874
Q ss_pred C
Q 023529 104 G 104 (281)
Q Consensus 104 G 104 (281)
-
T Consensus 66 v 66 (256)
T PRK13321 66 V 66 (256)
T ss_pred c
Confidence 4
No 59
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=96.93 E-value=0.033 Score=50.32 Aligned_cols=72 Identities=15% Similarity=0.128 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeCCC---CC
Q 023529 188 DEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPK---VE 264 (281)
Q Consensus 188 D~~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~~~---~~ 264 (281)
+..|..+++..+..++..........+ -..|++.||.+...+. +++.+...+.-. ..++..|+ +.
T Consensus 204 eDiAaSLl~mV~~nIg~lA~~~a~~~~--------~~~IvF~Gg~L~~~~~--l~~~~~~~~~~~--~~~~ifp~h~~y~ 271 (279)
T TIGR00555 204 EDIAASLLGLIGNNIGQIAYLCALRYN--------IDRIVFIGSFLRNNQL--LMKVLSYATNFW--SKKALFLEHEGYS 271 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC--------CCeEEEECCcccCCHH--HHHHHHHHHhhc--CceEEEECCcchH
Confidence 347888998888888777776666666 4579999997766652 788888776643 24444454 44
Q ss_pred hhHHHHH
Q 023529 265 PAVGAAL 271 (281)
Q Consensus 265 ~~~GAa~ 271 (281)
+++||++
T Consensus 272 gAlGAaL 278 (279)
T TIGR00555 272 GAIGALL 278 (279)
T ss_pred HHhhhcc
Confidence 6777764
No 60
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=96.86 E-value=0.012 Score=51.80 Aligned_cols=74 Identities=18% Similarity=0.087 Sum_probs=45.8
Q ss_pred EEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCc---cCCHHHHHHHHHHHHHHHHHHcCCCccccceeEEcc
Q 023529 26 GLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHN---SVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (281)
Q Consensus 26 GVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~---~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~Igig~ 102 (281)
|+|+|.|++++++.+- +++.++....+..... -.+.+.+...+..+++.+-...+. ++..+.+++
T Consensus 1 g~dig~~~ik~v~~~~---------~~~~~~~~~~~~~~~~~g~I~d~~~~~~~l~~l~~~a~~~~g~---~~~~vvisV 68 (239)
T TIGR02529 1 GVDLGTANIVIVVLDE---------DGQPVAGVMQFADVVRDGIVVDFLGAVEIVRRLKDTLEQKLGI---ELTHAATAI 68 (239)
T ss_pred CCCcccceEEEEEEec---------CCCEEEEEecccccccCCeEEEhHHHHHHHHHHHHHHHHHhCC---CcCcEEEEE
Confidence 7999999999999884 5556777766543221 124555554555555443333332 466788999
Q ss_pred cCCCChhhH
Q 023529 103 SGVNHPTDQ 111 (281)
Q Consensus 103 ~G~~~~~~~ 111 (281)
|...+...+
T Consensus 69 P~~~~~~~r 77 (239)
T TIGR02529 69 PPGTIEGDP 77 (239)
T ss_pred CCCCCcccH
Confidence 987554433
No 61
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=96.79 E-value=0.043 Score=51.93 Aligned_cols=80 Identities=15% Similarity=0.103 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhCC----CceeeCCCCCh
Q 023529 190 VANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYP----GAVPIRPKVEP 265 (281)
Q Consensus 190 ~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p----~~~i~~~~~~~ 265 (281)
.++.|.+++|+.-+-.++.++..-+. .++-.|.--|.+.+..+. |++..++.++..+. .+.+....+..
T Consensus 376 l~~~i~~RAArlaa~~iaAi~~ktG~-----~k~~~v~~dGsv~e~yp~--f~~~~~~~l~~~~g~~~~~i~i~~a~dgs 448 (466)
T COG5026 376 LVELIGRRAARLAAVPIAAIVIKTGA-----YKAYHVGADGSVIERYPG--FRSMLREALKALLGEEGEKIKIKPAEDGS 448 (466)
T ss_pred HHHHHHHhhHHHHhhhHHHhhhhcCC-----Cccceeeeecchhhhchh--HHHHHHHHHHHhhcccCceeeEEecccCc
Confidence 56677888888888888888776662 237789999999999874 78999998886542 34555667888
Q ss_pred hHHHHHHHHhh
Q 023529 266 AVGAALLAWNS 276 (281)
Q Consensus 266 ~~GAa~la~~~ 276 (281)
-+||+..++-.
T Consensus 449 glGAAl~a~~~ 459 (466)
T COG5026 449 GLGAALCALLA 459 (466)
T ss_pred chHHHHHHHHh
Confidence 89999988643
No 62
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=96.65 E-value=0.0074 Score=58.49 Aligned_cols=77 Identities=21% Similarity=0.249 Sum_probs=60.0
Q ss_pred CcEEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCC------CCCccCCHHHHHHHHHHHHHHHHHHcCCCccc
Q 023529 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGC------SNHNSVGEDAARETIEKVMADALLKSGSNRSA 94 (281)
Q Consensus 21 ~~~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~------~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~ 94 (281)
..+++|||+|.|+.|++++|- .+|+++.....+- ..+.+.+|.++++++.+.|+.+.+..+....+
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~--------~~~e~l~~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~~~~ 76 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNA--------KNGELLSLAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVLNIK 76 (516)
T ss_pred cceEEEEEcCCCceEEEEEec--------CCCccceeeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhcccccc
Confidence 468999999999999999994 4788887776552 23345689999999999999998887766655
Q ss_pred cce-eEEcccCC
Q 023529 95 VRA-VCLAVSGV 105 (281)
Q Consensus 95 i~~-Igig~~G~ 105 (281)
+.+ +++|+.+.
T Consensus 77 ~~~~~~igv~~q 88 (516)
T KOG2517|consen 77 VVGATCIGVVNQ 88 (516)
T ss_pred ccccEEEEEEec
Confidence 554 56777764
No 63
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=96.37 E-value=0.89 Score=44.76 Aligned_cols=73 Identities=21% Similarity=0.286 Sum_probs=52.0
Q ss_pred EEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCC-CccCCHHH----HHHHHHHHHHHHHHHcCCCccccce
Q 023529 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN-HNSVGEDA----ARETIEKVMADALLKSGSNRSAVRA 97 (281)
Q Consensus 23 ~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~-~~~~~~~~----~~~~i~~~i~~~l~~~g~~~~~i~~ 97 (281)
+++|||--...+.+++++. +|+++...+..... ..-.-|+. =.++|..++++++++++++..+|.+
T Consensus 2 ~il~iets~~~~s~a~~~~---------~~~~~~~~~~~~~~~~gg~~p~~~~~~H~~~l~~~i~~~l~~~~~~~~~id~ 72 (535)
T PRK09605 2 IVLGIEGTAWKTSAGIVDS---------DGDVLFNESDPYKPPSGGIHPREAAEHHAEAIPKVIKEALEEAGLKPEDIDL 72 (535)
T ss_pred EEEEEEccccceEEEEEeC---------CCcEEEEEEeeccCCcCCCChHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCE
Confidence 7999999999999999982 56788776542110 00011233 2467889999999999999999999
Q ss_pred eEEcc-cC
Q 023529 98 VCLAV-SG 104 (281)
Q Consensus 98 Igig~-~G 104 (281)
|+++. ||
T Consensus 73 iav~~gPg 80 (535)
T PRK09605 73 VAFSQGPG 80 (535)
T ss_pred EEECCCCC
Confidence 87765 44
No 64
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=96.33 E-value=0.013 Score=51.83 Aligned_cols=83 Identities=13% Similarity=0.195 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhCCC----ceeeCCCCCh
Q 023529 190 VANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPG----AVPIRPKVEP 265 (281)
Q Consensus 190 ~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~----~~i~~~~~~~ 265 (281)
.|..|.+++|+..|-+++.+++.+......+.++..|.+-|++.++.+. |.+.+++.+++..+. +.+....+.+
T Consensus 153 I~~aV~~RAA~L~Aa~iaail~~~~~~~~~~~~~v~VavDGSv~~~~p~--f~~~l~~~l~~L~~~~~~~v~~~~~~dgs 230 (243)
T PF03727_consen 153 ICEAVSTRAARLVAAAIAAILNKIRENKGRPRREVTVAVDGSVYEKYPN--FRERLQEALDELLPEEGCKVEFVLSEDGS 230 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTCSSEEEEEEEESHHHHHSTT--HHHHHHHHHHHHSTT-CEEEEEEE-SSTH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhccccccCCceEEEEeCcceeeCHH--HHHHHHHHHHHhcccccceEEEEEecCch
Confidence 6778999999999999999999853211222347789999999999873 899999999998753 4555678899
Q ss_pred hHHHHHHHH
Q 023529 266 AVGAALLAW 274 (281)
Q Consensus 266 ~~GAa~la~ 274 (281)
.+|||..|.
T Consensus 231 g~GAAi~AA 239 (243)
T PF03727_consen 231 GVGAAIAAA 239 (243)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999885
No 65
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=96.29 E-value=0.013 Score=50.49 Aligned_cols=82 Identities=13% Similarity=0.022 Sum_probs=53.5
Q ss_pred CCCcEEEEEecCccceeeeeeecccCCCCCCCCCCeE-EEEecC-CCCCccCCHHHHHHHHHHHHHHHHHHcCC-Ccccc
Q 023529 19 GGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVL-ARAAAG-CSNHNSVGEDAARETIEKVMADALLKSGS-NRSAV 95 (281)
Q Consensus 19 ~~~~~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il-~~~~~~-~~~~~~~~~~~~~~~i~~~i~~~l~~~g~-~~~~i 95 (281)
...+.++++|+|||++|++++.+. +++... .+...+ +........+++.+.|.+.|.+++.+.+. +..+.
T Consensus 60 ~E~G~~LalDlGGTnlRv~~V~L~-------g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~~~~~~~ 132 (206)
T PF00349_consen 60 NEKGDFLALDLGGTNLRVALVELS-------GNGKVEIEQEKYKIPEELMNGSGEELFDFIADCIAEFLKEHNLESRDEK 132 (206)
T ss_dssp TTEEEEEEEEESSSSEEEEEEEEE-------SSSEEEEEEEEEE--HHHHTSBHHHHHHHHHHHHHHHHHHTTTTSTTSE
T ss_pred CCCceEEEEeecCcEEEEEEEEEc-------CCCCceeeeccccCChHHhcCCcccHHHHHHHHHHHHHHHhcccccccc
Confidence 355689999999999999999981 122121 112111 11221233588999999999999998766 33455
Q ss_pred ceeEEcccCCCC
Q 023529 96 RAVCLAVSGVNH 107 (281)
Q Consensus 96 ~~Igig~~G~~~ 107 (281)
.-+|+-.+=|.+
T Consensus 133 l~lGfTFSFP~~ 144 (206)
T PF00349_consen 133 LPLGFTFSFPVE 144 (206)
T ss_dssp EEEEEEEESSEE
T ss_pred cceEEEEEEEEE
Confidence 567777776643
No 66
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=95.93 E-value=0.02 Score=54.47 Aligned_cols=78 Identities=12% Similarity=0.078 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeCCCCChhHHHHH
Q 023529 192 NKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGAAL 271 (281)
Q Consensus 192 ~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~~~~~~~~GAa~ 271 (281)
++-++.+=..+.-++..++...+++ ..+.+.|+|.|+...+-+ ..+.+.=-|-...|.-++....+.++.||.+
T Consensus 300 Ir~~qlAKaAi~aGi~~Ll~~agi~---~~di~~v~lAG~FG~~l~---~~~a~~iGLlP~~~~~kv~~~GN~al~GA~~ 373 (412)
T PF14574_consen 300 IREFQLAKAAIRAGIEILLEEAGIS---PEDIDRVYLAGGFGNYLD---PESAIRIGLLPDVPAEKVRFVGNAALAGARM 373 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-----GGG--EEEEECSS-SEEE---HHHHHHTTSS--S-GGGEEEEC-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC---HHHccEEEEeCcccccCC---HHHHhhcCCCCCccccCEEEECcHHHHHHHH
Confidence 3456777777888888888887754 233589999999998865 2333332222111223455567788999998
Q ss_pred HHHh
Q 023529 272 LAWN 275 (281)
Q Consensus 272 la~~ 275 (281)
+.++
T Consensus 374 ~Ll~ 377 (412)
T PF14574_consen 374 ALLS 377 (412)
T ss_dssp HHHB
T ss_pred HhCC
Confidence 8764
No 67
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=95.92 E-value=1.5 Score=40.94 Aligned_cols=73 Identities=16% Similarity=0.233 Sum_probs=52.7
Q ss_pred EEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCC-------CCccCCHHHHHHHHHHHHHHHHHHcCCCcccc
Q 023529 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS-------NHNSVGEDAARETIEKVMADALLKSGSNRSAV 95 (281)
Q Consensus 23 ~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~-------~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i 95 (281)
.++|||--...+.++++|. +|+++...+.... .+. .-...=.++|..++++++++++++..+|
T Consensus 2 ~iLgIETScd~tsvAl~~~---------~~~il~~~~~sq~~~~G~GvvP~-~a~r~H~~~l~~~i~~~l~~a~~~~~di 71 (345)
T PTZ00340 2 LALGIEGSANKLGVGIVTS---------DGEILSNVRETYITPPGTGFLPR-ETAQHHREHILSLVKEALEEAKITPSDI 71 (345)
T ss_pred eEEEEEccchhhEEEEEEC---------CCcEEEEEEeeccccCCCCcCch-HHHHHHHHHHHHHHHHHHHHcCCCHHHC
Confidence 6899999999999999983 5778876543111 110 1123335789999999999999999999
Q ss_pred ceeEEcc-cCC
Q 023529 96 RAVCLAV-SGV 105 (281)
Q Consensus 96 ~~Igig~-~G~ 105 (281)
.+|+++. ||.
T Consensus 72 d~Iavt~GPGl 82 (345)
T PTZ00340 72 SLICYTKGPGM 82 (345)
T ss_pred CEEEEecCCCc
Confidence 9987765 443
No 68
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=95.62 E-value=0.11 Score=45.84 Aligned_cols=92 Identities=17% Similarity=0.232 Sum_probs=63.8
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhCCCce
Q 023529 178 PVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAV 257 (281)
Q Consensus 178 ~~v~~~A~~GD~~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~ 257 (281)
+.+.+.+.+|+. |+=.++-.+..++.-|..+.-... ...-|+|+|++..--+|..+...+++.+.+. .
T Consensus 232 EEli~~~~k~ek-arlaldtlal~vamEIagL~~~~~-------~~d~v~laGsvg~~~ep~dv~~ri~~~v~~k----~ 299 (332)
T COG4020 232 EELIQRYGKGEK-ARLALDTLALLVAMEIAGLLMVVY-------GCDGVVLAGSVGGDREPMDVLKRIKSKVFNK----V 299 (332)
T ss_pred HHHHHHhcCChh-hhHHHHHHHHHHHHHHhhhhceec-------CCceEEEecccccccchhhHHHHHHHHHHHH----H
Confidence 567787877665 887888888888888888764433 1455999999987654433556666666553 2
Q ss_pred eeCCCCChhHHHHHHHHhhhhccC
Q 023529 258 PIRPKVEPAVGAALLAWNSFMNAR 281 (281)
Q Consensus 258 i~~~~~~~~~GAa~la~~~~~~~~ 281 (281)
.+.+...+.+|.+..|.+-....|
T Consensus 300 ~~l~~esaaiG~a~IA~DI~~Gkr 323 (332)
T COG4020 300 AVLPPESAAIGLALIARDIASGKR 323 (332)
T ss_pred hhcCchhhhhhhHHHHHHHHcCcc
Confidence 234556689999999987665543
No 69
>PRK12440 acetate kinase; Reviewed
Probab=95.59 E-value=0.096 Score=49.45 Aligned_cols=87 Identities=16% Similarity=0.198 Sum_probs=68.0
Q ss_pred ChhhHHHHhccCCCh---HHhhcchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCc
Q 023529 156 SPDELIGWTYVDPSW---ARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGV 232 (281)
Q Consensus 156 s~~~l~~~~~~~~~~---~~~a~~a~~v~~~A~~GD~~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv 232 (281)
+.+++...+++.+.. ..+..-.++|.+++++||+.|+-.++-.+..+++-|..+...++ +.+.||+.||+
T Consensus 258 s~~e~~~~Ln~~SGLlg~sG~s~D~R~l~~~~~~gd~~A~lA~d~f~yri~k~Ig~~~a~l~-------gvDaiVFTgGI 330 (397)
T PRK12440 258 SQEKVFNSLNKKSGFLGVSGLTSDARGILEAMEEGHEGATLAFEVFTYRVAKYIASYLAALD-------SLDGIIFTGGI 330 (397)
T ss_pred CHHHHHHHHhccccceEecCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCCEEEECCcc
Confidence 677777777665321 11122358888888899999999999999999999999999887 38899999999
Q ss_pred ccCcchhhhHHHHHHHHHh
Q 023529 233 LEANRRWDIGREVVKCILR 251 (281)
Q Consensus 233 ~~~~~~~~l~~~i~~~l~~ 251 (281)
.++.. .+++.+.+.|.-
T Consensus 331 Gen~~--~vr~~i~~~l~~ 347 (397)
T PRK12440 331 GENSL--PIRREILKNLKL 347 (397)
T ss_pred ccCcH--HHHHHHHhhhhh
Confidence 99976 378888887764
No 70
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=95.59 E-value=1.8 Score=39.55 Aligned_cols=71 Identities=18% Similarity=0.229 Sum_probs=50.7
Q ss_pred EEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCC---------CCCccCCHHHHHHHHHHHHHHHHHHcCCCcccc
Q 023529 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGC---------SNHNSVGEDAARETIEKVMADALLKSGSNRSAV 95 (281)
Q Consensus 25 iGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~---------~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i 95 (281)
+|||--...+.++++|- +++++....... -.+. .....=.++|..+++++++++++++.++
T Consensus 1 LaidTs~~~~sval~~~---------~~~il~~~~~~~~~~~~~~gGi~p~-~~~~~H~~~l~~~i~~~l~~~~~~~~di 70 (305)
T TIGR00329 1 LGIETSCDDTGVAIVDE---------EGNVLANIKISQIPLHAKYGGVVPE-EASRHHAENIPPLLERALIESNVDKSEI 70 (305)
T ss_pred CEEecCccceEEEEEEC---------CCcEEEEEEecccccccccCCcCcc-hhHHHHHHHHHHHHHHHHHHcCCCHHHC
Confidence 47888888888888882 377887654321 1111 1233345789999999999999999999
Q ss_pred ceeEEcc-cCC
Q 023529 96 RAVCLAV-SGV 105 (281)
Q Consensus 96 ~~Igig~-~G~ 105 (281)
.+|+++. ||.
T Consensus 71 d~iav~~GPG~ 81 (305)
T TIGR00329 71 DLIAYTQGPGL 81 (305)
T ss_pred CEEEEecCCCc
Confidence 9998876 564
No 71
>PLN02666 5-oxoprolinase
Probab=95.51 E-value=0.052 Score=58.44 Aligned_cols=76 Identities=13% Similarity=0.071 Sum_probs=50.7
Q ss_pred CCcEEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHHHHHHHHHHHHHHHH-----HHcCCCccc
Q 023529 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADAL-----LKSGSNRSA 94 (281)
Q Consensus 20 ~~~~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l-----~~~g~~~~~ 94 (281)
.+.|.+|||+|||-|.++++|. ++.-+...+.+++.+. ...+.+++-|.++++.++ ...+++.++
T Consensus 7 ~~~~rigIDvGGTFTD~v~~~~---------~~~~~~~~K~~sttp~-d~~~gv~~Gi~~~l~~~~~~~~~~~~~~~~~~ 76 (1275)
T PLN02666 7 SRKFRFCIDRGGTFTDVYAEVP---------GGSDFRVLKLLSVDPA-NYDDAPREGIRRILEEVTGKKIPRSAKIPTER 76 (1275)
T ss_pred CCCEEEEEECCcCCEeEEEEec---------CCCeEEEEEeCCCCCC-ChhHHHHHHHHHHHHHHhcCCcccccCCChHH
Confidence 4579999999999999999984 5553555566653332 233556666766666654 234566667
Q ss_pred cceeEEcccCC
Q 023529 95 VRAVCLAVSGV 105 (281)
Q Consensus 95 i~~Igig~~G~ 105 (281)
+..|..|..-.
T Consensus 77 i~~v~hGTT~a 87 (1275)
T PLN02666 77 IEWIRMGTTVA 87 (1275)
T ss_pred ccEEEEechHH
Confidence 77777776643
No 72
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=95.47 E-value=0.087 Score=44.47 Aligned_cols=73 Identities=23% Similarity=0.303 Sum_probs=51.4
Q ss_pred EEEEecCccceeeeeeecccCCCCCCCCC--CeEEEEecCCCCCc---cCCHHHHHHHHHHHHHHHHHHcCCCcccccee
Q 023529 24 ILGLDGGTTSTVCICMPVISMSDSLPDPL--PVLARAAAGCSNHN---SVGEDAARETIEKVMADALLKSGSNRSAVRAV 98 (281)
Q Consensus 24 viGVD~GgT~~~~~l~d~~~~~~~~~~~g--~il~~~~~~~~~~~---~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~I 98 (281)
++|+|+|.|++++++.... ++| ++++....|+.... -.+.+.+.+.|.++++++-+.++.+ +..+
T Consensus 1 ~~~lDIGs~~ik~vv~~~~-------~~~~~~i~g~~~~~s~gi~~G~I~d~~~~~~~I~~ai~~ae~~~~~~---i~~V 70 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVD-------EDGEINVIGVGEVPSRGIRKGVIVDIEAAARAIREAVEEAERMAGVK---IDSV 70 (187)
T ss_pred CEEEEeccceEEEEEEEEc-------CCCCEEEEEEEEecCCCccCcEEECHHHHHHHHHHHHHHHHHHhCCc---ccEE
Confidence 4799999999999998741 134 66777766643221 1356777777888888777766754 6688
Q ss_pred EEcccCCC
Q 023529 99 CLAVSGVN 106 (281)
Q Consensus 99 gig~~G~~ 106 (281)
.+++||..
T Consensus 71 ~v~i~g~~ 78 (187)
T smart00842 71 YVGISGRH 78 (187)
T ss_pred EEEEcCCc
Confidence 88999873
No 73
>PRK14878 UGMP family protein; Provisional
Probab=95.42 E-value=2.1 Score=39.39 Aligned_cols=61 Identities=11% Similarity=0.182 Sum_probs=43.3
Q ss_pred HHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHh
Q 023529 180 VVSCAEAGD---EVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILR 251 (281)
Q Consensus 180 v~~~A~~GD---~~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~ 251 (281)
+.....+++ ..|..+.+...+.|.+.+.......+ ...|+|+|||+.+.. +.+.+.+.+++
T Consensus 204 v~~~i~~~~~~~diAa~fq~~l~~~l~~~~~~~~~~~g--------~~~vvlsGGVa~N~~---L~~~l~~~~~~ 267 (323)
T PRK14878 204 ALRLYKGKERLEDVCYSLRETAFAMLVEVTERALAHTG--------KKEVLLVGGVAANRR---LREKLEIMAED 267 (323)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCeEEEeccHHHHHH---HHHHHHHHHHH
Confidence 344444444 35667777777777777777776666 567999999998853 78888888765
No 74
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=95.30 E-value=0.18 Score=47.84 Aligned_cols=88 Identities=20% Similarity=0.172 Sum_probs=67.2
Q ss_pred ChhhHHHHhccCCCh---HHhhcchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCc
Q 023529 156 SPDELIGWTYVDPSW---ARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGV 232 (281)
Q Consensus 156 s~~~l~~~~~~~~~~---~~~a~~a~~v~~~A~~GD~~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv 232 (281)
+.+++...+++.+.. ..+..-.++|.+.+.+||+.|+-.++-.+..+++-|..+...+. .+-+.||+.||+
T Consensus 260 s~~el~~~L~~~sGLlg~sG~s~D~Rel~~~~~~gd~~A~lA~d~f~yri~k~Iga~~a~L~------g~vDaiVfTGGI 333 (402)
T PRK00180 260 SVDEIDNLLNKKSGLLGLSGVSSDMRDIEAAAEEGDERAKLALDVFVYRLAKYIGSYAAALN------GRLDAIVFTAGI 333 (402)
T ss_pred CHHHHHHHHhccccceEecCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCCEEEEcCcc
Confidence 667777777765321 11122357887777889999999999999999999999999984 137899999999
Q ss_pred ccCcchhhhHHHHHHHHHh
Q 023529 233 LEANRRWDIGREVVKCILR 251 (281)
Q Consensus 233 ~~~~~~~~l~~~i~~~l~~ 251 (281)
.++.+ .+++.+.+.+.-
T Consensus 334 gE~s~--~lr~~I~~~l~~ 350 (402)
T PRK00180 334 GENSA--LVREKVLEGLEF 350 (402)
T ss_pred ccCCH--HHHHHHHhhhhh
Confidence 98876 378888877754
No 75
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=95.18 E-value=0.18 Score=47.73 Aligned_cols=88 Identities=15% Similarity=0.177 Sum_probs=67.9
Q ss_pred ChhhHHHHhccCCCh---HHhhcchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCc
Q 023529 156 SPDELIGWTYVDPSW---ARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGV 232 (281)
Q Consensus 156 s~~~l~~~~~~~~~~---~~~a~~a~~v~~~A~~GD~~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv 232 (281)
+++++...+++.+.. ..+..-.++|.+++++||+.|+-.++-.+..+++-|..+...++ .+.+.||+.||+
T Consensus 264 s~~e~~~~Ln~~SGLlg~sG~s~D~Rel~~~~~~gd~~A~lA~~~f~yri~k~Iga~~a~L~------G~vDaiVFTGGI 337 (404)
T TIGR00016 264 SADDIENTLNKKSGLLGISGLSSDLRDIEDAYAEGNEQAQLAIKMYVHRIAKYIGSYIASLE------GNLDAIVFTGGI 337 (404)
T ss_pred CHHHHHHHHhhcccceEecCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhC------CCCCEEEEcCcc
Confidence 667777777664321 11122358888888899999999999999999999999999988 125899999999
Q ss_pred ccCcchhhhHHHHHHHHHh
Q 023529 233 LEANRRWDIGREVVKCILR 251 (281)
Q Consensus 233 ~~~~~~~~l~~~i~~~l~~ 251 (281)
.++.+ .+++.+.+.+.-
T Consensus 338 GEns~--~vr~~i~~~l~~ 354 (404)
T TIGR00016 338 GENAA--TVRELVLEALEF 354 (404)
T ss_pred ccCCH--HHHHHHHhhhhh
Confidence 98876 388888887763
No 76
>PRK09604 UGMP family protein; Validated
Probab=95.17 E-value=2.6 Score=38.96 Aligned_cols=73 Identities=19% Similarity=0.283 Sum_probs=52.9
Q ss_pred EEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCC---------CCccCCHHHHHHHHHHHHHHHHHHcCCCcc
Q 023529 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS---------NHNSVGEDAARETIEKVMADALLKSGSNRS 93 (281)
Q Consensus 23 ~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~---------~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~ 93 (281)
+++|||--...+.++++|. +++++........ .+. .....=.++|..++++++++.++++.
T Consensus 2 ~iLgIdTS~~~~sval~~~---------~~~il~~~~~~~~~~~~~~~Gi~P~-~a~~~H~~~l~~~i~~~L~~~~~~~~ 71 (332)
T PRK09604 2 LILGIETSCDETSVAVVDD---------GRGLLSNVVASQIDLHARYGGVVPE-LASRAHVENIVPLIEEALKEAGLTLE 71 (332)
T ss_pred eEEEEEccccceEEEEEEC---------CCcEEEEEEecchhcccccCCcCcc-hhHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 6899999777789999982 4478866543211 010 11233467899999999999999999
Q ss_pred ccceeEEcc-cCC
Q 023529 94 AVRAVCLAV-SGV 105 (281)
Q Consensus 94 ~i~~Igig~-~G~ 105 (281)
++.+|+++. ||.
T Consensus 72 did~iavt~GPG~ 84 (332)
T PRK09604 72 DIDAIAVTAGPGL 84 (332)
T ss_pred HCCEEEEecCCCc
Confidence 999998887 565
No 77
>PRK12379 propionate/acetate kinase; Provisional
Probab=94.71 E-value=0.29 Score=46.33 Aligned_cols=87 Identities=16% Similarity=0.176 Sum_probs=68.0
Q ss_pred ChhhHHHHhccCCCh---HHhhcchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCc
Q 023529 156 SPDELIGWTYVDPSW---ARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGV 232 (281)
Q Consensus 156 s~~~l~~~~~~~~~~---~~~a~~a~~v~~~A~~GD~~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv 232 (281)
+.+++...+++.+.. ..+..-.++|.+++++||+.|+-.++-.+..+++-|..+...++ +.+.||+.||+
T Consensus 255 s~~el~~~Lnk~SGLlg~sG~s~D~R~v~~~~~~gd~~A~lA~d~f~yri~k~IGa~~a~L~-------~vDaIVFTGGI 327 (396)
T PRK12379 255 TLGDLERVVNKESGLLGISGLSSDLRVLEKAWHEGHERAQLAIKTFVHRIARHIAGHAASLH-------RLDGIIFTGGI 327 (396)
T ss_pred CHHHHHHHHhccccceEecCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCCEEEECCcc
Confidence 677777777765321 11122358888888899999999999999999999999998887 28899999999
Q ss_pred ccCcchhhhHHHHHHHHHh
Q 023529 233 LEANRRWDIGREVVKCILR 251 (281)
Q Consensus 233 ~~~~~~~~l~~~i~~~l~~ 251 (281)
.++.. .+++.+-+.|.-
T Consensus 328 Gen~~--~vR~~i~~~L~~ 344 (396)
T PRK12379 328 GENSS--LIRRLVMEHLAV 344 (396)
T ss_pred ccCcH--HHHHHHHhhhhh
Confidence 99976 378888887764
No 78
>PRK07157 acetate kinase; Provisional
Probab=94.38 E-value=0.33 Score=45.91 Aligned_cols=87 Identities=18% Similarity=0.182 Sum_probs=66.7
Q ss_pred ChhhHHHHhccCCCh---HHhhcchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCc
Q 023529 156 SPDELIGWTYVDPSW---ARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGV 232 (281)
Q Consensus 156 s~~~l~~~~~~~~~~---~~~a~~a~~v~~~A~~GD~~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv 232 (281)
+.+++...+++.+.. ..+..-.++|.+++++||+.|+-.++-.+..+++-|..+...++ .+.+.||+.||+
T Consensus 257 s~~e~~~~Ln~~SGLlg~sG~s~D~R~l~~~~~~gd~~A~lA~d~f~yri~k~Ig~~~a~L~------G~vDaiVFTgGI 330 (400)
T PRK07157 257 SISEFTDLLNKKSGLLGVSGISSDLRDVIKAAESGNKRAKFALDLYAQKIVDYLANYINKIG------KKIDAIVFTAGV 330 (400)
T ss_pred CHHHHHHHHhhccCceEecCCCCcHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhC------CCCCEEEECCcc
Confidence 666777777664321 11122358888888899999999999999999999999999987 126899999999
Q ss_pred ccCcchhhhHHHHHHHHH
Q 023529 233 LEANRRWDIGREVVKCIL 250 (281)
Q Consensus 233 ~~~~~~~~l~~~i~~~l~ 250 (281)
.++.. .+++.+.+.+.
T Consensus 331 Gen~~--~vr~~i~~~l~ 346 (400)
T PRK07157 331 GENSA--FVRELVINKIN 346 (400)
T ss_pred ccCcH--HHHHHHHhhcc
Confidence 99976 27788777665
No 79
>PRK12397 propionate kinase; Reviewed
Probab=94.36 E-value=0.34 Score=45.94 Aligned_cols=87 Identities=16% Similarity=0.182 Sum_probs=67.7
Q ss_pred ChhhHHHHhccCCCh---HHhhcchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCc
Q 023529 156 SPDELIGWTYVDPSW---ARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGV 232 (281)
Q Consensus 156 s~~~l~~~~~~~~~~---~~~a~~a~~v~~~A~~GD~~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv 232 (281)
+.+++...+++.+.. ..+..-.++|.+++.+||+.|+-.++-.+..+++-|..+...++ +-+.||+.||+
T Consensus 259 s~~e~~~~Lnk~SGLlg~sG~s~D~R~l~~~~~~gd~~A~lA~d~f~yri~k~IGa~~a~lg-------gvDaiVFTGGI 331 (404)
T PRK12397 259 TPQQLNQLLNNESGLLGVSGVSSDYRDVEQAANTGNRQAKLALTLFAERIRATIGSYIMQMG-------GLDALVFTGGI 331 (404)
T ss_pred CHHHHHHHHhccccceEecCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCCEEEECCch
Confidence 677777777765321 12122358888888899999999999999999999999888866 37899999999
Q ss_pred ccCcchhhhHHHHHHHHHh
Q 023529 233 LEANRRWDIGREVVKCILR 251 (281)
Q Consensus 233 ~~~~~~~~l~~~i~~~l~~ 251 (281)
.++.. .+++.+-+.|.-
T Consensus 332 GEns~--~vR~~ic~~L~~ 348 (404)
T PRK12397 332 GENSA--RARSAVCHNLQF 348 (404)
T ss_pred hhCCH--HHHHHHHhhhhh
Confidence 99977 388888887764
No 80
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.31 E-value=0.14 Score=51.76 Aligned_cols=67 Identities=18% Similarity=0.040 Sum_probs=44.5
Q ss_pred cEEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCccccceeEEc
Q 023529 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (281)
Q Consensus 22 ~~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~Igig 101 (281)
.+.+|||.|||.|.++++|. ++.++...+..++ + ..+..+...+.+.+...+.. +.|..|-+|
T Consensus 2 ~~~iGID~GGTfTDaV~~~~---------~~g~~~~~K~lTt-P--~~~~~~~~~~~~~~~~~~~~-----~~i~~v~~g 64 (674)
T COG0145 2 MLRIGIDVGGTFTDAVLLDE---------DGGVLATIKVLTT-P--DLPSGIVNAGIRLALELLEG-----SEVDLVVHG 64 (674)
T ss_pred ceEEEEEcCCCcEeEEEEeC---------CCCEEEEEEccCC-C--CchhhHHHHHHHHHhhcccc-----ccccEEEEe
Confidence 58999999999999999994 4448888888866 5 34455544444444433321 356666666
Q ss_pred ccCC
Q 023529 102 VSGV 105 (281)
Q Consensus 102 ~~G~ 105 (281)
..-.
T Consensus 65 TT~a 68 (674)
T COG0145 65 TTLA 68 (674)
T ss_pred ccHH
Confidence 6543
No 81
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=94.03 E-value=0.04 Score=53.05 Aligned_cols=67 Identities=13% Similarity=0.074 Sum_probs=44.6
Q ss_pred EEEecCccceeeeeeecccCCCCCCCC---CCeE-EEEecCCC------CCccCCHHHHHHHHHHHHHHHHHHcCCCccc
Q 023529 25 LGLDGGTTSTVCICMPVISMSDSLPDP---LPVL-ARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSA 94 (281)
Q Consensus 25 iGVD~GgT~~~~~l~d~~~~~~~~~~~---g~il-~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~ 94 (281)
++||+|.|.+|++++|. + |+++ .....+.. +....+++.+++.+.+.++++... ..+
T Consensus 1 ~aiD~Gtt~~k~~l~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~----~~~ 67 (454)
T TIGR02627 1 VAVDLGASSGRVMLASY---------ENECQKLTLEEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDAE----GIA 67 (454)
T ss_pred CcEeccCCchheEEEEE---------cCCCceEEEEEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhcc----CCC
Confidence 58999999999999996 4 4665 33332211 122346678888888888887652 235
Q ss_pred cceeEEcccC
Q 023529 95 VRAVCLAVSG 104 (281)
Q Consensus 95 i~~Igig~~G 104 (281)
|.+|++..-|
T Consensus 68 i~~Igis~q~ 77 (454)
T TIGR02627 68 PDSIGIDTWG 77 (454)
T ss_pred ceEEEEeccc
Confidence 7777666554
No 82
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=93.77 E-value=0.46 Score=45.38 Aligned_cols=76 Identities=16% Similarity=0.306 Sum_probs=51.8
Q ss_pred cEEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCc---cCCHHHHHHHHHHHHHHHHHHcCCCcccccee
Q 023529 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHN---SVGEDAARETIEKVMADALLKSGSNRSAVRAV 98 (281)
Q Consensus 22 ~~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~---~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~I 98 (281)
.+++|+|+|.|++++++....+ +..-++++....|+.... -.+.+++.+.|.++++++-..+|. ++..|
T Consensus 8 ~~i~~lDIGsskv~~vv~~~~~-----~~~~~i~g~~~~~s~gi~~G~I~d~~~~~~aI~~av~~ae~~~g~---~i~~v 79 (420)
T PRK09472 8 KLVVGLEIGTAKVAALVGEVLP-----DGMVNIIGVGSCPSRGMDKGGVNDLESVVKCVQRAIDQAELMADC---QISSV 79 (420)
T ss_pred CEEEEEEcccceEEEEEEEEcC-----CCCEEEEEEEEccCCCccCCEEEcHHHHHHHHHHHHHHHHHHhCC---cccEE
Confidence 4799999999999998876310 012356677776653221 125667777777777777666654 46788
Q ss_pred EEcccCC
Q 023529 99 CLAVSGV 105 (281)
Q Consensus 99 gig~~G~ 105 (281)
.+++||.
T Consensus 80 ~v~i~g~ 86 (420)
T PRK09472 80 YLALSGK 86 (420)
T ss_pred EEEecCc
Confidence 8899987
No 83
>PRK07058 acetate kinase; Provisional
Probab=93.50 E-value=0.46 Score=44.92 Aligned_cols=84 Identities=17% Similarity=0.125 Sum_probs=61.1
Q ss_pred ChhhHHHHhccCCCh---HHhhcchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCc
Q 023529 156 SPDELIGWTYVDPSW---ARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGV 232 (281)
Q Consensus 156 s~~~l~~~~~~~~~~---~~~a~~a~~v~~~A~~GD~~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv 232 (281)
+.+++...+++.+.. ..+..-.++|. +++|+.|+-.++-.+..+++.|..+...++ +-+.||+.||+
T Consensus 259 s~~el~~~Ln~~SGLlg~sG~s~D~R~l~---~~~d~~A~lA~d~f~yri~k~IGa~~a~Lg-------~vDaiVfTGGI 328 (396)
T PRK07058 259 SLDEVEDLLYHRSGLLGVSGISGDTRDLL---ASDAPEAREALDLFALRIAGEIARLAATLG-------GLDAVVFTAGI 328 (396)
T ss_pred CHHHHHHHHhcccCcEEecCCCCCHHHHh---hcCCHhHHHHHHHHHHHHHHHHHHHHHHhC-------CCCEEEECCcc
Confidence 566666666654321 11112235562 347999999999999999999999988886 37899999999
Q ss_pred ccCcchhhhHHHHHHHHHh
Q 023529 233 LEANRRWDIGREVVKCILR 251 (281)
Q Consensus 233 ~~~~~~~~l~~~i~~~l~~ 251 (281)
.++.. .+++.+.+.+.-
T Consensus 329 gEns~--~vr~~i~~~l~~ 345 (396)
T PRK07058 329 GEHQP--AIRAAVCERLAW 345 (396)
T ss_pred ccCcH--HHHHHHHhhhhh
Confidence 98876 388888888764
No 84
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=93.43 E-value=0.45 Score=44.50 Aligned_cols=72 Identities=25% Similarity=0.382 Sum_probs=48.6
Q ss_pred EEEEecCccceeeeeeecccCCCCCCCCC--CeEEEEecCCCCCc---cCCHHHHHHHHHHHHHHHHHHcCCCcccccee
Q 023529 24 ILGLDGGTTSTVCICMPVISMSDSLPDPL--PVLARAAAGCSNHN---SVGEDAARETIEKVMADALLKSGSNRSAVRAV 98 (281)
Q Consensus 24 viGVD~GgT~~~~~l~d~~~~~~~~~~~g--~il~~~~~~~~~~~---~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~I 98 (281)
++|+|+|.|++++++.... .++ ++++....|+.... -.+.+.+.+.|.++++++-++++.+ +..+
T Consensus 2 ~~~lDIGs~~ik~vv~~~~-------~~~~~~i~~~~~~~~~gi~~G~I~d~~~~~~~i~~al~~~e~~~~~~---i~~v 71 (371)
T TIGR01174 2 IVGLDIGTSKICAIVAEVL-------EDGELNIIGVGTHPSRGIKKGVINDIEAAVGSIQRAIEAAELMAGCE---IRSV 71 (371)
T ss_pred EEEEEeccceEEEEEEEEc-------CCCCEEEEEEEEecCCCccCcEEEcHHHHHHHHHHHHHHHHHHhCCc---ccEE
Confidence 6899999999999998641 134 56666666643221 1245677777777777776666654 5577
Q ss_pred EEcccCC
Q 023529 99 CLAVSGV 105 (281)
Q Consensus 99 gig~~G~ 105 (281)
.+++||.
T Consensus 72 ~~~v~g~ 78 (371)
T TIGR01174 72 IVSISGA 78 (371)
T ss_pred EEEEccc
Confidence 7888885
No 85
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=93.36 E-value=0.8 Score=42.93 Aligned_cols=93 Identities=16% Similarity=0.124 Sum_probs=67.4
Q ss_pred HHHhcCCCChhhHHHHhccCCC---hHHhhcchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCc
Q 023529 148 ILSTLELSSPDELIGWTYVDPS---WARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSF 224 (281)
Q Consensus 148 ~~~~~~~~s~~~l~~~~~~~~~---~~~~a~~a~~v~~~A~~GD~~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~ 224 (281)
+.+..+ -|.+++...+++.+. .+.+..-.|+|.+++.+|++ |+-.++-..+-|++-+......++ ..+
T Consensus 251 l~~~~~-~s~~~i~~~LNkkSGllGlSg~ssD~R~l~~~~~~g~~-A~lA~~~f~~Ri~kyIg~y~a~L~-------glD 321 (396)
T COG0282 251 LMEQEG-MSAEEIDTLLNKKSGLLGLSGLSSDMRDLEEAAAEGNE-AKLALDMFVYRIAKYIGSYAAALG-------GLD 321 (396)
T ss_pred HHHhcC-CCHHHHHHHHhhhccccccccccchHHHHHHHhccCch-HHHHHHHHHHHHHHHHHHHHHHhC-------CCC
Confidence 344444 266677766665432 12223346899999999976 877788888888888888888887 378
Q ss_pred cEEEEcCcccCcchhhhHHHHHHHHHh
Q 023529 225 PLVMVGGVLEANRRWDIGREVVKCILR 251 (281)
Q Consensus 225 ~IvLgGgv~~~~~~~~l~~~i~~~l~~ 251 (281)
.||+.||+.++... +++.+.+.|.-
T Consensus 322 aiVFTaGIGENs~~--iR~~v~~~L~~ 346 (396)
T COG0282 322 ALVFTAGIGENSAL--VRELVCEGLAF 346 (396)
T ss_pred EEEEeCccccCcHH--HHHHHHhhhhh
Confidence 99999999999873 88888887764
No 86
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=93.26 E-value=4.7 Score=37.54 Aligned_cols=69 Identities=20% Similarity=0.247 Sum_probs=48.9
Q ss_pred EEEEecCccceeeeeeecccCCCCCCCCCCeEEEEe---------cCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCccc
Q 023529 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAA---------AGCSNHNSVGEDAARETIEKVMADALLKSGSNRSA 94 (281)
Q Consensus 24 viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~---------~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~ 94 (281)
++||+-.=.-|.++++|. .++++.... .+.-.|. .-...=.++|..++++++..++.++.|
T Consensus 34 VLgIETSCDDTavaVVd~---------~~~~~~~~i~~~t~~~~~yGGI~P~-~a~~~Hr~ni~~~iqral~aa~~~p~d 103 (405)
T KOG2707|consen 34 VLGIETSCDDTAVAVVDE---------FSHVLSSEIYSRTEIHRQYGGIIPT-VAQLLHRENIPRLIQRALDAAGLSPKD 103 (405)
T ss_pred eeeEecccCcceeeeecc---------cccccchhhhhhhHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 999998888888889995 566555421 1222221 122334578999999999999999999
Q ss_pred cceeEEcc
Q 023529 95 VRAVCLAV 102 (281)
Q Consensus 95 i~~Igig~ 102 (281)
+.+|++-.
T Consensus 104 ldaIAVT~ 111 (405)
T KOG2707|consen 104 LDAIAVTR 111 (405)
T ss_pred ceeEEEec
Confidence 99887644
No 87
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=92.42 E-value=0.62 Score=45.04 Aligned_cols=80 Identities=13% Similarity=0.141 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhC-C--CceeeCCCCChh
Q 023529 190 VANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDY-P--GAVPIRPKVEPA 266 (281)
Q Consensus 190 ~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~-p--~~~i~~~~~~~~ 266 (281)
.|.-|.+++|+.-|.+|+.+++..+.. ...-..|.+.|++.+++| .|.+.+.+.+.+.. | .+.+...++..-
T Consensus 383 vc~~v~~RaA~L~aagIaail~k~~~~---~~~~~~VgvdGsly~~yP--~f~~~m~~~l~eLlg~~~~v~i~~s~dgSg 457 (474)
T KOG1369|consen 383 VCDVVSRRAARLAAAGIAAILNKTGEL---SRKRVTVGVDGSLYKNHP--FFREYLKEALRELLGPSIHVKLVLSEDGSG 457 (474)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhccc---ccCceEEEeccchhHcCc--hHHHHHHHHHHHHhCCCceEEEEECCCCcc
Confidence 677888999999999999999997721 112456889999999987 38999999999776 3 355666788889
Q ss_pred HHHHHHHH
Q 023529 267 VGAALLAW 274 (281)
Q Consensus 267 ~GAa~la~ 274 (281)
.|||++|.
T Consensus 458 ~GAAL~Aa 465 (474)
T KOG1369|consen 458 RGAALIAA 465 (474)
T ss_pred ccHHHHHH
Confidence 99999885
No 88
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=91.90 E-value=11 Score=35.11 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHh
Q 023529 190 VANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILR 251 (281)
Q Consensus 190 ~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~ 251 (281)
.|..+=+.+.+.|.+-+...+..+. ...++++|||..+.. |++.+++....
T Consensus 237 ia~sfQ~av~~~L~~kt~rAl~~~~--------~~~lvi~GGVaaN~~---LR~~l~~~~~~ 287 (342)
T COG0533 237 IAASFQEAVFDMLVEKTERALKHTG--------KKELVIAGGVAANSR---LREMLEEMCKE 287 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC--------CCEEEEeccHHHhHH---HHHHHHHHHHh
Confidence 5666666778888888888888888 778999999998864 78888777754
No 89
>PF13941 MutL: MutL protein
Probab=91.30 E-value=0.68 Score=44.69 Aligned_cols=57 Identities=12% Similarity=0.131 Sum_probs=40.4
Q ss_pred EEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHHHHHHHHHHHHHHHHHHcCC
Q 023529 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGS 90 (281)
Q Consensus 24 viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g~ 90 (281)
++.+|+|.|.|++.++|.. +++.+++++.+.|++-. + ..+..=+.++++++-++.+.
T Consensus 2 ~L~~DiGST~Tk~~l~d~~------~~~~~~ig~a~apTTv~---~-~Dv~~G~~~A~~~l~~~~~~ 58 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLV------DGEPRLIGQAEAPTTVE---P-GDVTIGLNNALEQLEEQTPA 58 (457)
T ss_pred EEEEEeCCcceEEeEEecc------CCccEEEEEEeCCCCcC---c-ccHHHHHHHHHHHHHHhcCC
Confidence 6899999999999999921 15788999999887542 1 34555556666666555543
No 90
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=91.16 E-value=1.1 Score=37.60 Aligned_cols=73 Identities=19% Similarity=0.150 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeCCCCChhHHH
Q 023529 190 VANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGA 269 (281)
Q Consensus 190 ~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~~~~~~~~GA 269 (281)
.++.+++-.+-.+-..+..+-...+. .+..|++.||..++ + + +.+.+...+.+ ++.+......+++||
T Consensus 123 ~~rAv~Egia~~~~~~~~~l~~~~~~------~~~~i~~~GG~~~n-~-~-~~q~~Advl~~---~V~~~~~~e~~a~Ga 190 (198)
T PF02782_consen 123 LARAVLEGIAFSLRQILEELEELTGI------PIRRIRVSGGGAKN-P-L-WMQILADVLGR---PVVRPEVEEASALGA 190 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTS------CESEEEEESGGGGS-H-H-HHHHHHHHHTS---EEEEESSSTHHHHHH
T ss_pred HHHHHHHhHHHHHHHhhhhccccccc------cceeeEeccccccC-h-H-HHHHHHHHhCC---ceEeCCCCchHHHHH
Confidence 34455555555555555555444342 38899999999955 4 2 56666666653 333333456789999
Q ss_pred HHHHH
Q 023529 270 ALLAW 274 (281)
Q Consensus 270 a~la~ 274 (281)
+++|.
T Consensus 191 A~~A~ 195 (198)
T PF02782_consen 191 ALLAA 195 (198)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99985
No 91
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=90.82 E-value=1.4 Score=40.93 Aligned_cols=72 Identities=14% Similarity=0.219 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeC--C----CCChhH
Q 023529 194 ILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIR--P----KVEPAV 267 (281)
Q Consensus 194 il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~--~----~~~~~~ 267 (281)
-++...+.+.+.++.+..... +|+.|+|+|.++...+ |.+.+++.+.+.+| +++.. + ...++.
T Consensus 239 a~ea~~E~i~k~V~~l~~~~~-------~~~~IilSGr~~~~~~---~~~~l~~~l~~~~~-~~v~~l~~~~~~aKeaA~ 307 (343)
T PF07318_consen 239 AWEAMIESIVKAVASLLASVP-------DPDEIILSGRFSRIPE---FRKKLEDRLEDYFP-VKVRKLEGLARKAKEAAQ 307 (343)
T ss_pred HHHHHHHHHHHHHHHHhcccC-------CCCEEEEeccccccHH---HHHHHHHHHHhhcc-cceeecccccccchhhhh
Confidence 567777778888887766552 3888999999998865 89999999988775 22221 1 245899
Q ss_pred HHHHHHHhh
Q 023529 268 GAALLAWNS 276 (281)
Q Consensus 268 GAa~la~~~ 276 (281)
|||+.|-..
T Consensus 308 GaAiIA~gl 316 (343)
T PF07318_consen 308 GAAIIANGL 316 (343)
T ss_pred hHHHHhhhh
Confidence 999998543
No 92
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=89.85 E-value=2.4 Score=40.61 Aligned_cols=73 Identities=23% Similarity=0.312 Sum_probs=52.4
Q ss_pred EEEEEecCccceeeeeeecccCCCCCCCCC--CeEEEEecCCCCCc---cCCHHHHHHHHHHHHHHHHHHcCCCccccce
Q 023529 23 VILGLDGGTTSTVCICMPVISMSDSLPDPL--PVLARAAAGCSNHN---SVGEDAARETIEKVMADALLKSGSNRSAVRA 97 (281)
Q Consensus 23 ~viGVD~GgT~~~~~l~d~~~~~~~~~~~g--~il~~~~~~~~~~~---~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~ 97 (281)
+++|+|+|.+|+.+.+.-+. ++| ++++....++.... -.+.+.+.+.|.++++++-..+|.+ +..
T Consensus 7 ~iv~LDIGTskV~~lVge~~-------~~g~i~iig~g~~~SrGik~G~I~di~~~~~sI~~av~~AE~mag~~---i~~ 76 (418)
T COG0849 7 LIVGLDIGTSKVKALVGELR-------PDGRLNIIGVGSHPSRGIKKGVIVDLDAAAQSIKKAVEAAERMAGCE---IKS 76 (418)
T ss_pred eEEEEEccCcEEEEEEEEEc-------CCCeEEEEeeecccCcccccceEEcHHHHHHHHHHHHHHHHHhcCCC---cce
Confidence 89999999999999998752 233 34454444433221 1356788888889999888888765 568
Q ss_pred eEEcccCC
Q 023529 98 VCLAVSGV 105 (281)
Q Consensus 98 Igig~~G~ 105 (281)
|.++++|-
T Consensus 77 v~vs~sG~ 84 (418)
T COG0849 77 VIVSLSGN 84 (418)
T ss_pred EEEEeccc
Confidence 88999994
No 93
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=89.64 E-value=2.1 Score=39.08 Aligned_cols=89 Identities=15% Similarity=0.206 Sum_probs=59.6
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcC--cccCcchhhhHHHHHHHHHhhCCC
Q 023529 178 PVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGG--VLEANRRWDIGREVVKCILRDYPG 255 (281)
Q Consensus 178 ~~v~~~A~~GD~~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGg--v~~~~~~~~l~~~i~~~l~~~~p~ 255 (281)
.++.+.+.. |+.+..-++..+..+++.++.|.-. +.+ +..|+|+|+ .+.... .+.+.+++.|.. .
T Consensus 226 eE~~~~~~~-~e~~~lA~dal~~~vameIasLl~l-~~~------~~~IvLSGs~g~~r~~~--~v~~~I~~~L~~---~ 292 (326)
T TIGR03281 226 EEILNNYNG-DEPGRLALDSLAMSVAMEIASLGLL-DCK------EAGVVLAGSGGTLREPI--NFSGKIKRVLSC---K 292 (326)
T ss_pred HHHHHHhcc-ChhHHHHHHHHHHHHHHHHHhheec-cCC------CCcEEEeCcchhccCch--HHHHHHHHHhCC---C
Confidence 456666655 4556677788899999999998776 421 447999999 444431 156666666652 2
Q ss_pred ceeeCCCCChhHHHHHHHHhhhhcc
Q 023529 256 AVPIRPKVEPAVGAALLAWNSFMNA 280 (281)
Q Consensus 256 ~~i~~~~~~~~~GAa~la~~~~~~~ 280 (281)
+... ....++.|+|..|...+...
T Consensus 293 V~~L-~~ksAA~G~AiIA~dI~gGk 316 (326)
T TIGR03281 293 VLVL-DSESAAIGLALIAEDIFSGK 316 (326)
T ss_pred eEEe-cchhhhhhHHHHHHHHhCCc
Confidence 3322 34779999999998766543
No 94
>TIGR03725 bact_YeaZ universal bacterial protein YeaZ. This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.
Probab=89.54 E-value=1.5 Score=37.44 Aligned_cols=66 Identities=18% Similarity=0.268 Sum_probs=49.9
Q ss_pred EEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCccccceeEEccc
Q 023529 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (281)
Q Consensus 24 viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~Igig~~ 103 (281)
++++|--+..+.+++++ +++++.+..... ...-.+.|..+|++++++++++..++..|.++.
T Consensus 1 iLaidTs~~~~sval~~----------~~~~~~~~~~~~-------~~~h~~~l~~~i~~~l~~~~~~~~~i~~iav~~- 62 (202)
T TIGR03725 1 ILAIDTSTEALSVALLD----------DGEILAERSEEA-------GRNHSEILLPMIEELLAEAGLSLQDLDAIAVGV- 62 (202)
T ss_pred CEEEECCCcceEEEEEE----------CCEEEEEEeehh-------hHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEec-
Confidence 47899999999999998 677877664331 122346788899999999999999999887664
Q ss_pred CCCC
Q 023529 104 GVNH 107 (281)
Q Consensus 104 G~~~ 107 (281)
||++
T Consensus 63 GPGS 66 (202)
T TIGR03725 63 GPGS 66 (202)
T ss_pred CCCh
Confidence 5544
No 95
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=86.84 E-value=3.9 Score=41.85 Aligned_cols=63 Identities=14% Similarity=0.160 Sum_probs=39.3
Q ss_pred HHHHHHHHhCCH---HHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHh
Q 023529 178 PVVVSCAEAGDE---VANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILR 251 (281)
Q Consensus 178 ~~v~~~A~~GD~---~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~ 251 (281)
..+.+...+|.+ .|..+....++.|...+..+....+ ...|+|+|||+.+.. +.+.+.+.+.+
T Consensus 619 ~~ii~~l~~g~~~~~IAa~fh~tla~~L~~~a~~~~~~~g--------~~~VvLSGGVfqN~~---L~~~L~~~L~~ 684 (711)
T TIGR00143 619 QRFLEDLLVGEDRSKIAHIAHKFVASGLVEIATAIAVPFG--------IHKIVISGGVFYNRL---LLERLAKYLKG 684 (711)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CCeEEEeccHHHHHH---HHHHHHHHHHh
Confidence 334444555652 3444444445555555555544444 557999999998854 78888888865
No 96
>PRK13324 pantothenate kinase; Reviewed
Probab=86.79 E-value=2.5 Score=37.71 Aligned_cols=67 Identities=10% Similarity=0.080 Sum_probs=43.5
Q ss_pred EEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCccccceeEEccc
Q 023529 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (281)
Q Consensus 24 viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~Igig~~ 103 (281)
++.||+|=|+++.+++| +++++...+.++.... ...|+. ...+..++.+.+....++..+.++.-
T Consensus 2 iL~iDiGNT~ik~gl~~----------~~~~~~~~r~~t~~~~-~t~de~----~~~l~~~~~~~~~~~~~i~~viisSV 66 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFD----------GDRIVSQIRYATSSVD-STSDQM----GVFLRQALRENSVDLGKIDGCGISSV 66 (258)
T ss_pred EEEEEeCCCceEEEEEE----------CCEEEEEEEEecCccc-cchHHH----HHHHHHHHHhcCCCccCCCeEEEEeC
Confidence 78999999999999999 4567666666542322 233444 34455566666666656777666654
Q ss_pred CC
Q 023529 104 GV 105 (281)
Q Consensus 104 G~ 105 (281)
-|
T Consensus 67 vP 68 (258)
T PRK13324 67 VP 68 (258)
T ss_pred cc
Confidence 43
No 97
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=86.00 E-value=2.6 Score=32.79 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=15.0
Q ss_pred EEEEecCccceeeeeee
Q 023529 24 ILGLDGGTTSTVCICMP 40 (281)
Q Consensus 24 viGVD~GgT~~~~~l~d 40 (281)
+++||+|++++.+.++.
T Consensus 1 i~~iDiGs~~~~~~i~~ 17 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAE 17 (120)
T ss_dssp EEEEEE-SSSEEEEEEE
T ss_pred CEEEEcCCCcEEEEEEE
Confidence 57999999999999998
No 98
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=85.47 E-value=3.1 Score=38.28 Aligned_cols=73 Identities=18% Similarity=0.206 Sum_probs=43.7
Q ss_pred cEEEEEecCccceeeeeeecccCCCCCCCCC--CeEEEEecCCC-CCccCCHHHHHHHHHHHHHHHHHHcCCCcccccee
Q 023529 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPL--PVLARAAAGCS-NHNSVGEDAARETIEKVMADALLKSGSNRSAVRAV 98 (281)
Q Consensus 22 ~~viGVD~GgT~~~~~l~d~~~~~~~~~~~g--~il~~~~~~~~-~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~I 98 (281)
..++|||+|.++++++.... ..+ ++......+.+ +....+.-.-.+.+.+.+++++++.+.+ ...+
T Consensus 3 ~~~vgiDIg~~~Ik~v~~~~--------~~~~~~v~~~~~~~~p~~~i~~g~i~d~~~~~~~l~~~~~~~~~~---~k~v 71 (348)
T TIGR01175 3 SLLVGIDIGSTSVKVAQLKR--------SGDRYKLEHYAVEPLPAGIFTEGHIVEYQAVAEALKELLSELGIN---TKKA 71 (348)
T ss_pred CcEEEEEeccCeEEEEEEEe--------cCCceEEEEEEEEECCCCcccCCCccCHHHHHHHHHHHHHHcCCC---cceE
Confidence 47999999999999999874 122 33443333321 1111121111345667777777777654 4567
Q ss_pred EEcccCC
Q 023529 99 CLAVSGV 105 (281)
Q Consensus 99 gig~~G~ 105 (281)
.+++||.
T Consensus 72 ~~alp~~ 78 (348)
T TIGR01175 72 ATAVPGS 78 (348)
T ss_pred EEEecCC
Confidence 7888885
No 99
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=84.98 E-value=1.4 Score=40.62 Aligned_cols=61 Identities=18% Similarity=0.223 Sum_probs=39.7
Q ss_pred EEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCccccceeEEcccC
Q 023529 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (281)
Q Consensus 25 iGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~Igig~~G 104 (281)
||+|+||-|++++++|- +|.+......+++-+ .+.+.+ .+++.+++++.+. ...+++-+.|
T Consensus 1 ~G~DiGGA~~K~a~~~~---------~g~~~~v~~~~~plW--~~~~~L----~~~l~~~~~~~~~----~~~~avtMTg 61 (318)
T TIGR03123 1 LGIDIGGANTKAAELDE---------DGRIKEVHQLYCPLW--KGNDKL----AETLKEISQDLSS----ADNVAVTMTG 61 (318)
T ss_pred CccccccceeeeEEecC---------CCceeEEEEecCccc--CCchHH----HHHHHHHHHhcCc----cceEEEEeeh
Confidence 68999999999999983 787776666665545 455544 3444444444321 1356677777
No 100
>PRK13320 pantothenate kinase; Reviewed
Probab=84.77 E-value=4.6 Score=35.70 Aligned_cols=59 Identities=19% Similarity=0.134 Sum_probs=37.8
Q ss_pred EEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCccccceeEEcc
Q 023529 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (281)
Q Consensus 23 ~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~Igig~ 102 (281)
+++.||+|-|+++.++++ +++++...+.+ .++....+ .+++++.+ ++..+.++.
T Consensus 3 M~L~iDiGNT~ik~~~~~----------~~~~~~~~~~~--------~~~~~~~l----~~~~~~~~----~i~~i~vsS 56 (244)
T PRK13320 3 MNLVIDIGNTTTKLAVFE----------GDELLEVFVVS--------TEGVEESL----EKLLAKYP----AIRDAIVSS 56 (244)
T ss_pred eEEEEEeCCCcEEEEEEE----------CCEEEEEEEEc--------cHHHHHHH----HHHHHHCC----CCCEEEEEe
Confidence 599999999999999999 56666655443 13332222 33444332 466777777
Q ss_pred cCCCC
Q 023529 103 SGVNH 107 (281)
Q Consensus 103 ~G~~~ 107 (281)
.++..
T Consensus 57 Vvp~~ 61 (244)
T PRK13320 57 VVPLA 61 (244)
T ss_pred cccch
Confidence 76644
No 101
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=83.66 E-value=5.7 Score=36.45 Aligned_cols=71 Identities=21% Similarity=0.290 Sum_probs=50.0
Q ss_pred EEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCC---------CCccCCHHHHHHHHHHHHHHHHHHcCCCccc
Q 023529 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS---------NHNSVGEDAARETIEKVMADALLKSGSNRSA 94 (281)
Q Consensus 24 viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~---------~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~ 94 (281)
+++||--...+.++++|- +++++........ .+. .....-.++|..+|++++++++++.++
T Consensus 1 iLaIdTs~~~~sval~~~---------~~~il~~~~~~~~~~~~~~gGi~p~-~~~~~H~~~l~~~i~~~l~~~~~~~~~ 70 (314)
T TIGR03723 1 ILGIETSCDETAVAIVDD---------GKGLLSNIVASQIELHARYGGVVPE-LASRAHLEAIPPLIEEALAEAGLTLSD 70 (314)
T ss_pred CEEEECcccceEEEEEEC---------CceEEEEEEeehhhhccCcCCcCcc-hhHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 578999999999999982 3347766543210 010 123444578999999999999999999
Q ss_pred cceeEEcc-cC
Q 023529 95 VRAVCLAV-SG 104 (281)
Q Consensus 95 i~~Igig~-~G 104 (281)
|.+|+++. ||
T Consensus 71 id~iav~~GPG 81 (314)
T TIGR03723 71 IDAIAVTAGPG 81 (314)
T ss_pred CCEEEEecCCC
Confidence 99987766 45
No 102
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=82.96 E-value=6.2 Score=36.26 Aligned_cols=72 Identities=18% Similarity=0.255 Sum_probs=46.4
Q ss_pred EEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCC-CccCCHH----HHHHHHHHHHHHHHHHcCCCccccceeE
Q 023529 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN-HNSVGED----AARETIEKVMADALLKSGSNRSAVRAVC 99 (281)
Q Consensus 25 iGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~-~~~~~~~----~~~~~i~~~i~~~l~~~g~~~~~i~~Ig 99 (281)
+|||--...+.+++++. +++++...+..... ..-.-++ .=.++|..++++++++++++..++.+|+
T Consensus 1 Lgiets~~~~s~al~~~---------~~~i~~~~~~~~~~~~gg~~p~~~~~~H~~~l~~~i~~~l~~~~~~~~did~Ia 71 (322)
T TIGR03722 1 LGIEGTAHTFGVGIVDE---------DGEILANVSDTYVPEKGGIHPREAAEHHAEVAPKLIKEALEEAGVSLEDIDAVA 71 (322)
T ss_pred CEEeccccceEEEEEEC---------CCeEEEEEEeecccCcCCcChhHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEE
Confidence 46777666677888873 56677644432110 0001122 2346788999999999999999999987
Q ss_pred Ecc-cCC
Q 023529 100 LAV-SGV 105 (281)
Q Consensus 100 ig~-~G~ 105 (281)
++. ||.
T Consensus 72 vt~gPg~ 78 (322)
T TIGR03722 72 FSQGPGL 78 (322)
T ss_pred EecCCch
Confidence 776 553
No 103
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=82.50 E-value=4.5 Score=39.37 Aligned_cols=67 Identities=16% Similarity=0.162 Sum_probs=45.0
Q ss_pred CCcEEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCc--------------cCCH-------HHHHHHHH
Q 023529 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHN--------------SVGE-------DAARETIE 78 (281)
Q Consensus 20 ~~~~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~--------------~~~~-------~~~~~~i~ 78 (281)
.+.|-+++|+|.|++++-++|| .+|+++...-. .|+. ..++ -++.++|.
T Consensus 162 ~~~YGvAvDlGTS~i~aqlVDL--------~sgevv~t~~T--~n~ql~~Ge~m~sr~~~i~~~~D~a~~l~~~vVe~i~ 231 (614)
T COG3894 162 NEAYGVAVDLGTSGIRAQLVDL--------KSGEVVATVIT--SNPQLPGGEVMDSRDFAIMMGPDGAEGLQIAVVEAIN 231 (614)
T ss_pred ceeeeeEEecccceeeeEEEec--------cCCcEEEeeec--cCCCCCCchhhHHHHHHHHhCcchhhhhHHHHHHHHH
Confidence 3569999999999999999999 58888876532 2211 0011 13456677
Q ss_pred HHHHHHHHHcCCCccccc
Q 023529 79 KVMADALLKSGSNRSAVR 96 (281)
Q Consensus 79 ~~i~~~l~~~g~~~~~i~ 96 (281)
+.++..+.+.++.+.+|.
T Consensus 232 ~~id~~~~e~~V~~n~I~ 249 (614)
T COG3894 232 QLIDKLCEEGEVCGNPIQ 249 (614)
T ss_pred HHHhhhchhccccccchh
Confidence 777777777666665544
No 104
>PRK13331 pantothenate kinase; Reviewed
Probab=82.38 E-value=6.3 Score=35.09 Aligned_cols=61 Identities=11% Similarity=-0.118 Sum_probs=40.8
Q ss_pred cEEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCccccceeEEc
Q 023529 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (281)
Q Consensus 22 ~~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~Igig 101 (281)
..++.||+|=|++++++++ +.+++...+ + +.. ...+ +..++...+....++..+.++
T Consensus 7 ~~~L~iDiGNT~~~~g~f~----------~~~~~~~~r--t-~~~-~t~d---------~~~~l~~~~~~~~~i~~~iis 63 (251)
T PRK13331 7 NEWLALMIGNSRLHWGYFS----------GETLVKTWD--T-PHL-DESI---------IQLLLPGQTLLIVAPNPLVIA 63 (251)
T ss_pred CcEEEEEeCCCcEEEEEEE----------CCEEEEEEE--c-CCc-chHH---------HHHHHHHcCCCccccCEEEEE
Confidence 4689999999999999999 556665444 2 221 2223 556666777766677777666
Q ss_pred ccCC
Q 023529 102 VSGV 105 (281)
Q Consensus 102 ~~G~ 105 (281)
..-|
T Consensus 64 SVVP 67 (251)
T PRK13331 64 SVVP 67 (251)
T ss_pred ecCc
Confidence 6544
No 105
>PRK13326 pantothenate kinase; Reviewed
Probab=82.15 E-value=7.3 Score=34.87 Aligned_cols=63 Identities=13% Similarity=-0.049 Sum_probs=40.2
Q ss_pred CcEEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCccccceeEE
Q 023529 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCL 100 (281)
Q Consensus 21 ~~~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~Igi 100 (281)
....+.||+|=|++++++++ +++++...+.++... ...++....+.. +.+. ++..+.+
T Consensus 5 ~~~~L~IDiGNT~ik~glf~----------~~~l~~~~r~~t~~~--~t~de~~~~l~~---------~~~~-~i~~vii 62 (262)
T PRK13326 5 LSSQLIIDIGNTSISFALYK----------DNKMQIFCKLKTKLD--LSFDELYSFLKE---------KFDF-KVNQVFV 62 (262)
T ss_pred ccEEEEEEeCCCeEEEEEEE----------CCEEEEEEEeccCCC--CCHHHHHHHHhc---------CCCC-CCCEEEE
Confidence 34689999999999999999 566776556554332 355665434433 3333 4666655
Q ss_pred cccCC
Q 023529 101 AVSGV 105 (281)
Q Consensus 101 g~~G~ 105 (281)
+.-.+
T Consensus 63 sSVvp 67 (262)
T PRK13326 63 SSVVP 67 (262)
T ss_pred EeCcc
Confidence 55544
No 106
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=81.41 E-value=6.5 Score=36.07 Aligned_cols=52 Identities=19% Similarity=0.272 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhh
Q 023529 190 VANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRD 252 (281)
Q Consensus 190 ~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~ 252 (281)
.|..+-...++.|.+.+.......+ ...|+++|||+.+.. +.+.+.+.++++
T Consensus 235 iA~~~q~~l~~~l~~~~~~~~~~~~--------~~~v~lsGGVa~N~~---l~~~l~~~~~~~ 286 (314)
T TIGR03723 235 IAASFQAAVVDVLVEKTKRALKKTG--------LKTLVVAGGVAANSR---LRERLEELAEKA 286 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC--------CCeEEEeccHHHHHH---HHHHHHHHHHHC
Confidence 5555556666666666666666555 557999999998854 788888888763
No 107
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=80.46 E-value=7.3 Score=34.37 Aligned_cols=47 Identities=17% Similarity=0.063 Sum_probs=31.8
Q ss_pred EEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHHHHHHHHHHHHH
Q 023529 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMA 82 (281)
Q Consensus 24 viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~ 82 (281)
++.||+|=|++++++++ +++++...+.++... ...++....+...+.
T Consensus 1 ~L~iDiGNT~i~~g~~~----------~~~~~~~~r~~t~~~--~t~de~~~~l~~~~~ 47 (243)
T TIGR00671 1 LLLIDVGNTRIVFALNS----------GNKVYQFWRLATNLM--KTYDEHSEFLKELFG 47 (243)
T ss_pred CEEEEECCCcEEEEEEE----------CCEEEEEEEecCCCc--cChHHHHHHHHHHHH
Confidence 37899999999999999 567766666664332 355665544444443
No 108
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=79.76 E-value=8.8 Score=37.47 Aligned_cols=76 Identities=13% Similarity=0.141 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeCCCCChhHHH
Q 023529 190 VANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGA 269 (281)
Q Consensus 190 ~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~~~~~~~~GA 269 (281)
.++.+++-.+..+...+..+....+ .....|+++||...+ +. +...+...+.+ .+.+.....++++||
T Consensus 375 l~rAvlEgia~~~~~~~~~~~~~~g------~~~~~i~~~GGga~s-~~--w~Qi~Adv~g~---pv~~~~~~e~~a~Ga 442 (505)
T TIGR01314 375 MIRAALEGVIYNLYTVALALVEVMG------DPLNMIQATGGFASS-EV--WRQMMSDIFEQ---EIVVPESYESSCLGA 442 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC------CCCcEEEEecCcccC-HH--HHHHHHHHcCC---eeEecCCCCcchHHH
Confidence 4666777777776666666655444 225689999997765 42 34444444432 233333445789999
Q ss_pred HHHHHhhh
Q 023529 270 ALLAWNSF 277 (281)
Q Consensus 270 a~la~~~~ 277 (281)
+++|.-.+
T Consensus 443 A~la~~~~ 450 (505)
T TIGR01314 443 CILGLKAL 450 (505)
T ss_pred HHHHHHhc
Confidence 99986443
No 109
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=78.93 E-value=5.8 Score=34.52 Aligned_cols=69 Identities=20% Similarity=0.246 Sum_probs=52.1
Q ss_pred EEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCccccceeEEcc
Q 023529 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (281)
Q Consensus 23 ~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~Igig~ 102 (281)
+++.||-.+..+-+++++- ++++++.+...+... +. -+++..++++++.+++.+..++.+|.++.
T Consensus 2 ~iLaiDTs~~~~s~ai~~~--------~~~~vl~~~~~~~~r------~h-se~l~~~i~~ll~~~~~~~~dld~iav~~ 66 (220)
T COG1214 2 KILAIDTSTSALSVALYLA--------DDGKVLAEHTEKLKR------NH-AERLMPMIDELLKEAGLSLQDLDAIAVAK 66 (220)
T ss_pred cEEEEEcChhhhhhheeec--------CCCcEEEEEEEeccc------cH-HHHHHHHHHHHHHHcCCCHHHCCEEEEcc
Confidence 6899999999998888872 258888887765321 11 35777889999999999999999987776
Q ss_pred cCCCC
Q 023529 103 SGVNH 107 (281)
Q Consensus 103 ~G~~~ 107 (281)
||++
T Consensus 67 -GPGS 70 (220)
T COG1214 67 -GPGS 70 (220)
T ss_pred -CCCc
Confidence 4433
No 110
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=78.68 E-value=48 Score=29.51 Aligned_cols=75 Identities=15% Similarity=0.092 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhC-CC---ceeeCCCCC
Q 023529 189 EVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDY-PG---AVPIRPKVE 264 (281)
Q Consensus 189 ~~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~-p~---~~i~~~~~~ 264 (281)
..++.++-.....++....-..+.+| .+.|+++|+.....-. -+..+.-.+..-. |. +-+....+-
T Consensus 252 di~~sll~aisnnigqiAyl~A~~~n--------~qNIyfgGSf~rnhl~--tm~tl~Yai~~ws~~t~~ayfl~hegyl 321 (342)
T COG5146 252 DILASLLGAISNNIGQIAYLVAREFN--------TQNIYFGGSFHRNHLL--TMVTLDYAILRWSKPTMNAYFLEHEGYL 321 (342)
T ss_pred HHHHHHHHHHhcchhhhHHHHHHhhc--------cceEEEeeeeccchhh--hhhhhHHHHHhhcCcccceeeeeccchh
Confidence 35667788888888888888888888 7899999987766420 1222222222222 21 223334567
Q ss_pred hhHHHHHHH
Q 023529 265 PAVGAALLA 273 (281)
Q Consensus 265 ~~~GAa~la 273 (281)
+++||.++.
T Consensus 322 Ga~GAf~~~ 330 (342)
T COG5146 322 GAIGAFYLG 330 (342)
T ss_pred hHHHHHhhc
Confidence 899999874
No 111
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=77.76 E-value=5.2 Score=36.91 Aligned_cols=71 Identities=20% Similarity=0.210 Sum_probs=44.4
Q ss_pred EEEEEecCccceeeeeeecccCCCCCCCCCCeE---EEEecC-CCCCccCCHHHHHHHHHHHHHHHHHHcCCCcccccee
Q 023529 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVL---ARAAAG-CSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAV 98 (281)
Q Consensus 23 ~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il---~~~~~~-~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~I 98 (281)
..+|||||.+.++++-... .|+.. .....+ +.|....+.-.=.+.+.+.+++++.++++.- +-+
T Consensus 11 ~~vGIdI~~~sVKvvqLs~---------~g~~~kLe~y~~~~lp~~iv~dg~ivd~~av~~~Lk~ala~~gi~~---k~a 78 (354)
T COG4972 11 AAVGIDIGSHSVKVVQLSR---------SGNRYKLEKYASEPLPENIVADGKIVDYDAVASALKRALAKLGIKS---KNA 78 (354)
T ss_pred ceeeEeeccceEEEEEEcc---------cCCceeeeeeeecccCccccccCCcccHHHHHHHHHHHHHhcCcch---hhh
Confidence 6899999999999998773 44333 222222 2222212211123566788888888888764 455
Q ss_pred EEcccCC
Q 023529 99 CLAVSGV 105 (281)
Q Consensus 99 gig~~G~ 105 (281)
.+++||-
T Consensus 79 a~AVP~s 85 (354)
T COG4972 79 ATAVPGS 85 (354)
T ss_pred hhhcCcc
Confidence 5688885
No 112
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=76.70 E-value=12 Score=36.58 Aligned_cols=75 Identities=16% Similarity=0.105 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeCCCCChhHHH
Q 023529 190 VANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGA 269 (281)
Q Consensus 190 ~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~~~~~~~~GA 269 (281)
.++.+++-.+-.+...+..+-...+ .++..|++.||.+++ +. +.+.+...+.. .+.+......+++||
T Consensus 380 i~rAvlEgia~~~r~~~~~l~~~~g------~~~~~i~~~GG~a~s-~~--w~Qi~Adv~g~---pV~~~~~~e~~alGa 447 (504)
T PTZ00294 380 IVRAALEAIALQTNDVIESMEKDAG------IELNSLRVDGGLTKN-KL--LMQFQADILGK---DIVVPEMAETTALGA 447 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC------CCcceEEEecccccC-HH--HHHHHHHHhCC---ceEecCcccchHHHH
Confidence 4566666666666555555543223 226788999998866 31 44444444443 233333445689999
Q ss_pred HHHHHhh
Q 023529 270 ALLAWNS 276 (281)
Q Consensus 270 a~la~~~ 276 (281)
+++|...
T Consensus 448 Al~aa~a 454 (504)
T PTZ00294 448 ALLAGLA 454 (504)
T ss_pred HHHHHhh
Confidence 9998643
No 113
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=76.25 E-value=8.3 Score=34.88 Aligned_cols=83 Identities=16% Similarity=0.167 Sum_probs=54.2
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhC-----
Q 023529 179 VVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDY----- 253 (281)
Q Consensus 179 ~v~~~A~~GD~~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~----- 253 (281)
.+.+.|..+..+.. +....+.+-+.+..+..... |+.|.|+|-....++ |.+.++++|+..+
T Consensus 240 ef~~~ake~enle~--~~~l~e~vvK~v~tllps~~--------pd~iylSGrf~~~~~---~~~dv~~~l~d~~s~~g~ 306 (374)
T COG2441 240 EFVKLAKEDENLET--YNALIEGVVKDVFTLLPSTY--------PDAIYLSGRFSRIPR---FFSDVKEKLRDAFSSYGF 306 (374)
T ss_pred HHHHHhhcccchHH--HHHHHHHHHHHHHHhccccC--------cceEEEeeecccccc---hhhHHHHHHHHHHhhcCc
Confidence 34445554443332 55566667777777766555 999999999998876 7888999998764
Q ss_pred -CCceeeCC---CCChhHHHHHHHH
Q 023529 254 -PGAVPIRP---KVEPAVGAALLAW 274 (281)
Q Consensus 254 -p~~~i~~~---~~~~~~GAa~la~ 274 (281)
+.++.... ...++.||+.+|-
T Consensus 307 ~~evr~le~~~K~KeaA~GaAiiAn 331 (374)
T COG2441 307 GIEVRKLESRAKAKEAAEGAAIIAN 331 (374)
T ss_pred cceeehhhhhhhhhhhccchhhhhh
Confidence 22322211 2457888888773
No 114
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=74.54 E-value=17 Score=35.04 Aligned_cols=76 Identities=16% Similarity=0.118 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeCCCCChhHHH
Q 023529 190 VANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGA 269 (281)
Q Consensus 190 ~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~~~~~~~~GA 269 (281)
.++.+++-.+-.+...+..+-...+ .++..|++.||..++ +. +...+...+.+ .+........+++||
T Consensus 364 l~railEgia~~~~~~~~~l~~~~~------~~~~~i~~~GG~s~s-~~--~~Q~~Adv~g~---pv~~~~~~e~~a~Ga 431 (481)
T TIGR01312 364 LTRAVLEGVTFALRDSLDILREAGG------IPIQSIRLIGGGAKS-PA--WRQMLADIFGT---PVDVPEGEEGPALGA 431 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC------CCcceEEEeccccCC-HH--HHHHHHHHhCC---ceeecCCCcchHHHH
Confidence 5566666666666666655543212 126789999998755 32 45555554432 233333456789999
Q ss_pred HHHHHhhh
Q 023529 270 ALLAWNSF 277 (281)
Q Consensus 270 a~la~~~~ 277 (281)
+++|...+
T Consensus 432 A~~a~~~~ 439 (481)
T TIGR01312 432 AILAAWAL 439 (481)
T ss_pred HHHHHHhc
Confidence 99986443
No 115
>PRK00047 glpK glycerol kinase; Provisional
Probab=73.08 E-value=16 Score=35.61 Aligned_cols=75 Identities=15% Similarity=0.004 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeCCCCChhHHH
Q 023529 190 VANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGA 269 (281)
Q Consensus 190 ~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~~~~~~~~GA 269 (281)
.++.+++-.+-.+...+..+-...+ ..+..|++.||..++ +. +.+.+...+.. .+........+++||
T Consensus 377 l~rAvlEgia~~~r~~~e~l~~~~g------~~~~~i~~~GGga~s-~~--w~Qi~ADvlg~---pV~~~~~~e~~a~Ga 444 (498)
T PRK00047 377 IIRATLESIAYQTRDVLDAMQADSG------IRLKELRVDGGAVAN-NF--LMQFQADILGV---PVERPVVAETTALGA 444 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC------CCCceEEEecCcccC-HH--HHHHHHHhhCC---eeEecCcccchHHHH
Confidence 4556666666655555555543222 236789999997655 42 44554444443 222223445689999
Q ss_pred HHHHHhh
Q 023529 270 ALLAWNS 276 (281)
Q Consensus 270 a~la~~~ 276 (281)
+++|...
T Consensus 445 A~~A~~~ 451 (498)
T PRK00047 445 AYLAGLA 451 (498)
T ss_pred HHHHhhh
Confidence 9998644
No 116
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=73.03 E-value=3.6 Score=41.74 Aligned_cols=48 Identities=27% Similarity=0.300 Sum_probs=30.6
Q ss_pred CccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeCCCCChhHHHHHHHHh
Q 023529 223 SFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGAALLAWN 275 (281)
Q Consensus 223 p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~~~~~~~~GAa~la~~ 275 (281)
-..|+|.||-..-+. +.+.+++.+.+ +......|..+.++||++.|.-
T Consensus 354 Id~VvLVGGssriP~---V~~~l~~~fg~--~~~~~~nPdeaVA~GAAi~a~~ 401 (657)
T PTZ00186 354 INDVVLVGGMTRMPK---VVEEVKKFFQK--DPFRGVNPDEAVALGAATLGGV 401 (657)
T ss_pred CCEEEEECCcccChH---HHHHHHHHhCC--CccccCCCchHHHHhHHHHHHH
Confidence 557999999886632 45555544432 1223344677788999999853
No 117
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=72.24 E-value=27 Score=28.91 Aligned_cols=56 Identities=16% Similarity=0.103 Sum_probs=38.3
Q ss_pred EEEEEecCccceeeeeeecccCCCCCCCCCCe---EEEEecCCCCCccCCHHHHHHHHHHHHHHHHHHcC
Q 023529 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPV---LARAAAGCSNHNSVGEDAARETIEKVMADALLKSG 89 (281)
Q Consensus 23 ~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~i---l~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g 89 (281)
.++|||=|-|++=.++++. +++. +......+... .+..+-+..|.+.+.+++++..
T Consensus 3 ~iLGIDPgl~~tG~avi~~---------~~~~~~~~~~G~i~t~~~--~~~~~Rl~~I~~~l~~~i~~~~ 61 (164)
T PRK00039 3 RILGIDPGLRRTGYGVIEV---------EGRRLSYVASGVIRTPSD--LDLPERLKQIYDGLSELIDEYQ 61 (164)
T ss_pred EEEEEccccCceeEEEEEe---------cCCeEEEEEeeEEECCCC--CCHHHHHHHHHHHHHHHHHHhC
Confidence 6999999999999999985 4542 33333332211 2444557788888888888753
No 118
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=72.22 E-value=18 Score=29.10 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=28.4
Q ss_pred ccccchhcCCCcEEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecC
Q 023529 11 DFETAEESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG 61 (281)
Q Consensus 11 ~~~~~~~~~~~~~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~ 61 (281)
.|.......-...++|||=|.| +-++++|+ +|+++......
T Consensus 21 ~F~pl~~~~~~~lIVGiDPG~t-tgiAildL---------~G~~l~l~S~R 61 (138)
T PF04312_consen 21 EFVPLSKRSRRYLIVGIDPGTT-TGIAILDL---------DGELLDLKSSR 61 (138)
T ss_pred eEccccccCCCCEEEEECCCce-eEEEEEec---------CCcEEEEEeec
Confidence 3444433334568889998755 56777898 99999887654
No 119
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=70.86 E-value=15 Score=33.27 Aligned_cols=32 Identities=22% Similarity=0.150 Sum_probs=28.2
Q ss_pred cEEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCC
Q 023529 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGC 62 (281)
Q Consensus 22 ~~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~ 62 (281)
.++|.+|=|+|++|+.+++ ++|+++.+.+...
T Consensus 5 ~~~i~iDWGTT~~R~wL~~---------~dg~~l~~r~~~~ 36 (306)
T COG3734 5 PAYIAIDWGTTNLRAWLVR---------GDGAVLAERRSED 36 (306)
T ss_pred ceEEEEecCCccEEEEEEc---------CCcceeeeecccc
Confidence 5899999999999999999 4999998887653
No 120
>PRK11678 putative chaperone; Provisional
Probab=70.64 E-value=25 Score=33.98 Aligned_cols=48 Identities=17% Similarity=0.168 Sum_probs=33.4
Q ss_pred CccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeC--CCCChhHHHHHHHHhhh
Q 023529 223 SFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIR--PKVEPAVGAALLAWNSF 277 (281)
Q Consensus 223 p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~--~~~~~~~GAa~la~~~~ 277 (281)
|+.|+|.||.... +.+++.+.+.+|..++.. +..+.+.|++..|-+.+
T Consensus 400 ~d~VvLvGGsSri-------P~V~~~l~~~fg~~~v~~g~~~~sVa~Gla~~a~~~~ 449 (450)
T PRK11678 400 PDVIYLTGGSARS-------PLIRAALAQQLPGIPIVGGDDFGSVTAGLARWAQVVF 449 (450)
T ss_pred CCEEEEcCcccch-------HHHHHHHHHHCCCCcEEeCCCcchHHHHHHHHHHhhc
Confidence 7899999998854 456677777776655543 33456789998886543
No 121
>PLN02669 xylulokinase
Probab=70.11 E-value=18 Score=36.03 Aligned_cols=73 Identities=12% Similarity=0.143 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeCCCCChhHHH
Q 023529 190 VANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGA 269 (281)
Q Consensus 190 ~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~~~~~~~~GA 269 (281)
.++.+++-.+-.+-..+..+ .. +..|..|++.||..++ +. +...+...+.. .+.......++++||
T Consensus 421 ~~RAvlEg~a~~~r~~~~~l----~~----~~~~~~i~~~GGgs~s-~~--w~Qi~ADVlg~---pV~~~~~~ea~alGA 486 (556)
T PLN02669 421 EVRAIIEGQFLSMRAHAERF----GM----PVPPKRIIATGGASAN-QS--ILKLIASIFGC---DVYTVQRPDSASLGA 486 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHH----hC----CCCCcEEEEEcChhcC-HH--HHHHHHHHcCC---CeEecCCCCchHHHH
Confidence 45555555555554444444 21 1237889999997754 42 45555554443 233333445789999
Q ss_pred HHHHHhh
Q 023529 270 ALLAWNS 276 (281)
Q Consensus 270 a~la~~~ 276 (281)
|++|.-.
T Consensus 487 A~~A~~~ 493 (556)
T PLN02669 487 ALRAAHG 493 (556)
T ss_pred HHHHHHH
Confidence 9999643
No 122
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=69.96 E-value=19 Score=28.88 Aligned_cols=20 Identities=35% Similarity=0.295 Sum_probs=17.8
Q ss_pred cEEEEEecCccceeeeeeec
Q 023529 22 EVILGLDGGTTSTVCICMPV 41 (281)
Q Consensus 22 ~~viGVD~GgT~~~~~l~d~ 41 (281)
..++|+|.|.-+|=+++.|.
T Consensus 4 ~~iLalD~G~kriGvAv~d~ 23 (138)
T PRK00109 4 GRILGLDVGTKRIGVAVSDP 23 (138)
T ss_pred CcEEEEEeCCCEEEEEEecC
Confidence 45999999999999999984
No 123
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=69.90 E-value=20 Score=34.82 Aligned_cols=75 Identities=16% Similarity=0.053 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeCCCCChhHHH
Q 023529 190 VANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGA 269 (281)
Q Consensus 190 ~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~~~~~~~~GA 269 (281)
.++.+++-.+-.+-..+..+-...+ ..+..|.+.||..++ +. +...+...+.+ .+.+......+++||
T Consensus 373 l~rAvlEgia~~~~~~~~~l~~~~g------~~~~~i~~~GGga~s-~~--w~Qi~ADv~g~---pv~~~~~~e~~alGa 440 (493)
T TIGR01311 373 IARAALEAIAFQTRDVLEAMEKDAG------VEITKLRVDGGMTNN-NL--LMQFQADILGV---PVVRPKVTETTALGA 440 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC------CCCceEEEecccccC-HH--HHHHHHHhcCC---eeEecCCCcchHHHH
Confidence 4555565555555555554433212 226789999998766 32 34444444332 233323456689999
Q ss_pred HHHHHhh
Q 023529 270 ALLAWNS 276 (281)
Q Consensus 270 a~la~~~ 276 (281)
+++|.-.
T Consensus 441 A~~a~~~ 447 (493)
T TIGR01311 441 AYAAGLA 447 (493)
T ss_pred HHHHHhh
Confidence 9998644
No 124
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=69.70 E-value=14 Score=35.68 Aligned_cols=52 Identities=19% Similarity=0.078 Sum_probs=32.6
Q ss_pred EecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHHHHHHH-HHHHHHHHHHHcCC
Q 023529 27 LDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARET-IEKVMADALLKSGS 90 (281)
Q Consensus 27 VD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~-i~~~i~~~l~~~g~ 90 (281)
+|+|.|.|++.+||+ ++++++...+..+. + ..+.+..= +.++++++.++.+.
T Consensus 1 ~DiGST~Tk~~a~~~--------~~~~~~~~~~~~tp--T--t~~dv~~G~~~~a~~~l~~~~~~ 53 (463)
T TIGR01319 1 LDFGSTWTKAAAFDI--------EGDAILATAHDITP--I--ESDHLAGGFFNKANEKLNEDLAG 53 (463)
T ss_pred CCccccceEEEEEec--------CCCcEEEEEeccCc--c--chhhhhcchHHHHHHHHHHhcCC
Confidence 599999999999997 46767766665431 1 11233333 55666666655543
No 125
>PRK10331 L-fuculokinase; Provisional
Probab=69.66 E-value=20 Score=34.56 Aligned_cols=74 Identities=14% Similarity=0.138 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeCCCCChhHHH
Q 023529 190 VANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGA 269 (281)
Q Consensus 190 ~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~~~~~~~~GA 269 (281)
.++.+++-.+-.+...+..+-..-. ..+..|++.||...+ +. +...+...+.. .+.+......+++||
T Consensus 363 l~rAvlEgia~~~~~~~~~l~~~~~------~~~~~i~~~GGga~s-~~--w~Qi~Advlg~---pV~~~~~~e~~a~Ga 430 (470)
T PRK10331 363 FYRAALEGLTAQLKRNLQVLEKIGH------FKASELLLVGGGSRN-AL--WNQIKANMLDI---PIKVLDDAETTVAGA 430 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC------CCCceEEEEcccccC-HH--HHHHHHHhcCC---eeEecCcccchHHHH
Confidence 4556666655555555555533211 126778888887655 42 34444443332 233333345689999
Q ss_pred HHHHHh
Q 023529 270 ALLAWN 275 (281)
Q Consensus 270 a~la~~ 275 (281)
+++|.-
T Consensus 431 A~la~~ 436 (470)
T PRK10331 431 AMFGWY 436 (470)
T ss_pred HHHHHH
Confidence 999864
No 126
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=69.40 E-value=25 Score=34.50 Aligned_cols=75 Identities=13% Similarity=0.049 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeCCCCChhHHH
Q 023529 190 VANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGA 269 (281)
Q Consensus 190 ~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~~~~~~~~GA 269 (281)
.++.+++-.+-.+...+..+-+..+ ..+..|++.||..++ +. +...+...+.+ .+........+++||
T Consensus 383 ~~RAvlEgia~~~~~~l~~l~~~~g------~~~~~i~~~GGga~s-~~--w~Qi~ADvlg~---pV~~~~~~e~~alGa 450 (520)
T PRK10939 383 LFRALEENAAIVSACNLQQIAAFSG------VFPSSLVFAGGGSKG-KL--WSQILADVTGL---PVKVPVVKEATALGC 450 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC------CCCcEEEEeCCcccC-HH--HHHHHHHhcCC---eeEEecccCchHHHH
Confidence 4455555555555444444433223 226789999997655 42 34444443332 233223345679999
Q ss_pred HHHHHhh
Q 023529 270 ALLAWNS 276 (281)
Q Consensus 270 a~la~~~ 276 (281)
+++|...
T Consensus 451 A~lA~~~ 457 (520)
T PRK10939 451 AIAAGVG 457 (520)
T ss_pred HHHHHHH
Confidence 9998643
No 127
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=67.97 E-value=16 Score=35.49 Aligned_cols=63 Identities=21% Similarity=0.085 Sum_probs=43.3
Q ss_pred CCCcEEEEEecCccceeeeeeecccCCCCCCCCCC---eE-E--EEecCCCCCccCCHHHHHHHHHHHHHHHHHHcCCC
Q 023529 19 GGREVILGLDGGTTSTVCICMPVISMSDSLPDPLP---VL-A--RAAAGCSNHNSVGEDAARETIEKVMADALLKSGSN 91 (281)
Q Consensus 19 ~~~~~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~---il-~--~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~ 91 (281)
+..+.++++|+|||+.|+.++-+ .|. .. . ....| ........+++.+.|.+.+..++.+.+..
T Consensus 83 ~E~G~~lalDLGGTn~Rv~~v~L---------~g~~~~~~~~~~~~~ip-~~~m~gt~~~Lfd~Ia~~l~~F~~~~~~~ 151 (474)
T KOG1369|consen 83 TEKGKFLALDLGGTNFRVLLVKL---------GGGRTSVRMYNKIYAIP-EEIMQGTGEELFDFIARCLADFLDKMGLK 151 (474)
T ss_pred CcCCCEEEEecCCCceEEEEEEe---------cCCcccceeeeeeEecC-HHHHcCchHHHHHHHHHHHHHHHHHhccc
Confidence 35568999999999999999987 333 22 2 12223 22222345788889999999998877654
No 128
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=67.51 E-value=13 Score=30.00 Aligned_cols=61 Identities=18% Similarity=0.078 Sum_probs=36.3
Q ss_pred cEEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHH-HHHHHHHHHHHHHHHHcCCCccccceeEE
Q 023529 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGED-AARETIEKVMADALLKSGSNRSAVRAVCL 100 (281)
Q Consensus 22 ~~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~-~~~~~i~~~i~~~l~~~g~~~~~i~~Igi 100 (281)
..++|+|.|.-+|=+++-|. .+ .+++ |..+....... ..++.+.+ ++++. ++..|-+
T Consensus 2 ~~ilalD~G~KrIGvA~sd~---------~~-~~A~---pl~~i~~~~~~~~~~~~l~~----li~~~-----~~~~vVV 59 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDI---------LG-SLAS---PLETIKRKNGKPQDFNALLK----LVKEY-----QVDTVVV 59 (141)
T ss_pred ceEEEEecCCceEEEEEecC---------CC-cccc---chhhheeccccHhhHHHHHH----HHHHh-----CCCEEEE
Confidence 47999999999999999884 22 2333 22222212222 24444444 44443 5678889
Q ss_pred cccC
Q 023529 101 AVSG 104 (281)
Q Consensus 101 g~~G 104 (281)
|+|=
T Consensus 60 GlP~ 63 (141)
T COG0816 60 GLPL 63 (141)
T ss_pred ecCc
Confidence 9984
No 129
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=67.49 E-value=23 Score=34.15 Aligned_cols=75 Identities=13% Similarity=0.117 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeCCCCChhHHH
Q 023529 190 VANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGA 269 (281)
Q Consensus 190 ~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~~~~~~~~GA 269 (281)
..+.+++-.+-.+...+..+-..-. ..+..|++.||..++ +. +...+...+.. .+.+......+++||
T Consensus 367 l~rAvlEgia~~~r~~~e~l~~~~~------~~~~~i~~~GGga~s-~~--w~Qi~Adv~g~---pV~~~~~~e~~~lGa 434 (465)
T TIGR02628 367 IYRAALEGLTAQLKRNLQMLEQIGQ------FKASELLLVGGGSKN-TL--WNQIRANMLDI---PVKVVDDAETTVAGA 434 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC------CCcceEEEecCccCC-HH--HHHHhhhhcCC---eeEeccCCcchHHHH
Confidence 3444444444444444444432111 126778888887755 32 34444333332 233333345678999
Q ss_pred HHHHHhh
Q 023529 270 ALLAWNS 276 (281)
Q Consensus 270 a~la~~~ 276 (281)
+++|.-.
T Consensus 435 A~~a~~a 441 (465)
T TIGR02628 435 AMFGFYG 441 (465)
T ss_pred HHHHHHh
Confidence 9999643
No 130
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=65.31 E-value=12 Score=33.49 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccc
Q 023529 190 VANKILQDSVEELALSVKAVVQRLSL 215 (281)
Q Consensus 190 ~A~~il~~aa~~l~~~i~~lv~~l~~ 215 (281)
.|.++..+....|++.|....+..++
T Consensus 254 ~A~~~~~~~l~~l~e~I~~~a~r~gL 279 (330)
T COG1548 254 LAEKAYNALLELLAENIEEKAKRYGL 279 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCh
Confidence 57778888888899999999999884
No 131
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=65.25 E-value=33 Score=27.85 Aligned_cols=56 Identities=20% Similarity=0.160 Sum_probs=37.1
Q ss_pred EEEEecCccceeeeeeecccCCCCCCCCCC--eEEEEecCCCCCccCCHHHHHHHHHHHHHHHHHHcC
Q 023529 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLP--VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSG 89 (281)
Q Consensus 24 viGVD~GgT~~~~~l~d~~~~~~~~~~~g~--il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g 89 (281)
++|||-|-+++=.++++. .+++ ++......+... .+..+-+..|.+.+.+++.+..
T Consensus 2 ILGIDPGl~~~G~av~~~--------~~~~~~~~~~g~i~t~~~--~~~~~rl~~I~~~l~~~i~~~~ 59 (154)
T cd00529 2 ILGIDPGSRNTGYGVIEQ--------EGRKLIYLASGVIRTSSD--APLPSRLKTIYDGLNEVIDQFQ 59 (154)
T ss_pred EEEEccCcCceEEEEEEe--------eCCeEEEEEeeEEECCCC--CCHHHHHHHHHHHHHHHHHHhC
Confidence 799999999999999985 1222 233333333211 2445556788888999988664
No 132
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=64.84 E-value=28 Score=30.14 Aligned_cols=62 Identities=16% Similarity=0.079 Sum_probs=41.4
Q ss_pred CcEEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCC----CCCccCCHHHHHHHHHHHHHHHHHHcCCCc
Q 023529 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGC----SNHNSVGEDAARETIEKVMADALLKSGSNR 92 (281)
Q Consensus 21 ~~~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~----~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~ 92 (281)
...++|||+|...+...+.|. +|+.++-..--. .... .++-+.++.++.+.+.+-++.|+..
T Consensus 28 sk~~vGVDLGT~~iV~~vlD~---------d~~Pvag~~~~advVRDGiV-vdf~eaveiVrrlkd~lEk~lGi~~ 93 (277)
T COG4820 28 SKLWVGVDLGTCDIVSMVLDR---------DGQPVAGCLDWADVVRDGIV-VDFFEAVEIVRRLKDTLEKQLGIRF 93 (277)
T ss_pred CceEEEeecccceEEEEEEcC---------CCCeEEEEehhhhhhccceE-EehhhHHHHHHHHHHHHHHhhCeEe
Confidence 468999999999999999995 998886542211 0111 2344556666666666666666654
No 133
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=63.41 E-value=22 Score=28.83 Aligned_cols=56 Identities=14% Similarity=0.135 Sum_probs=35.2
Q ss_pred EEEEecCccceeeeeeecccCCCCCCCCC---CeEEEEecCCCCCccCCHHHHHHHHHHHHHHHHHHcCC
Q 023529 24 ILGLDGGTTSTVCICMPVISMSDSLPDPL---PVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGS 90 (281)
Q Consensus 24 viGVD~GgT~~~~~l~d~~~~~~~~~~~g---~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g~ 90 (281)
++|||-|-+++-.++++. ++ +.+......+... .+..+-+..|.+.+.+++++...
T Consensus 1 ILGIDPgl~~tG~avi~~---------~~~~~~~i~~G~I~t~~~--~~~~~Rl~~I~~~l~~li~~~~P 59 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEE---------DGGKLRLIDYGTIKTSSK--DSLPERLKEIYEELEELIEEYNP 59 (149)
T ss_dssp EEEEE--SSEEEEEEEEE---------ETTEEEEEEEEEEE---S----HHHHHHHHHHHHHHHHHHH--
T ss_pred CEEECCCCCCeeEEEEEe---------eCCEEEEEEeCeEECCCC--CCHHHHHHHHHHHHHHHHHhhCC
Confidence 689999999999999985 33 3344444443221 34566678889999999988643
No 134
>PHA03033 hypothetical protein; Provisional
Probab=63.28 E-value=2.4 Score=33.41 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=20.4
Q ss_pred ccccCcccccccchhcCCCcEEEEEec
Q 023529 3 RYRNGEIWDFETAEESGGREVILGLDG 29 (281)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~viGVD~ 29 (281)
+|-||.||||-|+...-..-++++.|.
T Consensus 4 ~eIng~~~DLFS~p~~~sLaHCIsAD~ 30 (142)
T PHA03033 4 EYINENIWDFLSDDDNINIISFISADF 30 (142)
T ss_pred EEecCcchhhhcCCCcceEeeeehhhh
Confidence 688999999999877665555666654
No 135
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=63.27 E-value=41 Score=26.81 Aligned_cols=19 Identities=37% Similarity=0.293 Sum_probs=17.6
Q ss_pred EEEEEecCccceeeeeeec
Q 023529 23 VILGLDGGTTSTVCICMPV 41 (281)
Q Consensus 23 ~viGVD~GgT~~~~~l~d~ 41 (281)
.++|+|.|..+|=+++.|.
T Consensus 2 riL~lD~G~kriGiAvsd~ 20 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVSDP 20 (135)
T ss_dssp EEEEEEECSSEEEEEEEET
T ss_pred eEEEEEeCCCeEEEEEecC
Confidence 6899999999999999994
No 136
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=63.15 E-value=22 Score=31.75 Aligned_cols=53 Identities=17% Similarity=0.237 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHh
Q 023529 188 DEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILR 251 (281)
Q Consensus 188 D~~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~ 251 (281)
...|..+-+.++++|...+...++..+ +..++++|||+.+.. +++.+++...+
T Consensus 195 ~~iA~s~q~~~~~~l~~~~~~a~~~~~--------~~~lv~~GGVaaN~~---lr~~l~~~~~~ 247 (268)
T PF00814_consen 195 ADIAASFQEAIADHLAKKAPRALEKPR--------AKSLVVSGGVAANKY---LREGLRKLCSE 247 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT--------CSEEEEESGGGGHHH---HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhc--------ccccchHHHHHHHHH---HHHHHHHHHHc
Confidence 456777777779999999988888877 889999999997753 78888776665
No 137
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=62.24 E-value=17 Score=28.72 Aligned_cols=29 Identities=14% Similarity=0.072 Sum_probs=24.6
Q ss_pred EEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecC
Q 023529 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG 61 (281)
Q Consensus 24 viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~ 61 (281)
++|||++-.+..++++|. .|......+.+
T Consensus 1 ~vGiDv~k~~~~v~v~~~---------~~~~~~~~~~~ 29 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDP---------NGEKLRRFKFE 29 (144)
T ss_pred eEEEEcccCeEEEEEEcC---------CCcEEEEEEEe
Confidence 689999999999999994 77777777765
No 138
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=61.29 E-value=31 Score=31.56 Aligned_cols=78 Identities=15% Similarity=0.133 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCCCCC-CccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceee-CCCCChhHH
Q 023529 191 ANKILQDSVEELALSVKAVVQRLSLSGEDGKH-SFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPI-RPKVEPAVG 268 (281)
Q Consensus 191 A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~-p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~-~~~~~~~~G 268 (281)
..+++..-...+...+...+...+.+.- ... +..|+|.||-..-.. +.+.+++.+.. .+.+. .|....+.|
T Consensus 248 ~~e~i~~~~~~i~~~i~~~l~~~~~~~~-~~l~~~~IvL~GGss~ipg---l~e~l~~~~~~---~v~~~~~P~~~va~G 320 (333)
T TIGR00904 248 VREALQEPVNQIVEAVKRTLEKTPPELA-ADIVERGIVLTGGGALLRN---LDKLLSKETGL---PVIVADDPLLCVAKG 320 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchhh-hhhccCCEEEECcccchhh---HHHHHHHHHCC---CceecCChHHHHHHH
Confidence 4455555555566666666555441100 000 125999999775432 44444444421 22222 255567899
Q ss_pred HHHHHHh
Q 023529 269 AALLAWN 275 (281)
Q Consensus 269 Aa~la~~ 275 (281)
|+.++-+
T Consensus 321 a~~~~~~ 327 (333)
T TIGR00904 321 TGKALED 327 (333)
T ss_pred HHHHHhC
Confidence 9988543
No 139
>CHL00094 dnaK heat shock protein 70
Probab=61.25 E-value=7 Score=39.35 Aligned_cols=48 Identities=29% Similarity=0.311 Sum_probs=29.7
Q ss_pred CccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeCCCCChhHHHHHHHHh
Q 023529 223 SFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGAALLAWN 275 (281)
Q Consensus 223 p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~~~~~~~~GAa~la~~ 275 (281)
-..|+|.||-...+. +.+.+++.+.+. + ..-..|..+.+.||++.|..
T Consensus 329 i~~ViLvGGssriP~---v~~~l~~~fg~~-~-~~~~~pdeava~GAA~~aa~ 376 (621)
T CHL00094 329 IDEVVLVGGSTRIPA---IQELVKKLLGKK-P-NQSVNPDEVVAIGAAVQAGV 376 (621)
T ss_pred CcEEEEECCccCChH---HHHHHHHHhCCC-c-CcCCCchhHHHhhhHHHHHH
Confidence 458999999886632 555555544321 1 11223566788999998864
No 140
>PRK13410 molecular chaperone DnaK; Provisional
Probab=60.89 E-value=8 Score=39.36 Aligned_cols=48 Identities=29% Similarity=0.244 Sum_probs=28.9
Q ss_pred CccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeCCCCChhHHHHHHHHh
Q 023529 223 SFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGAALLAWN 275 (281)
Q Consensus 223 p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~~~~~~~~GAa~la~~ 275 (281)
...|+|.||-...+. +.+.+++.+.+ +...-..|..+.+.||++.|..
T Consensus 329 Id~VvLVGGssRiP~---V~~~l~~~fg~--~~~~~~npdeaVA~GAAi~aa~ 376 (668)
T PRK13410 329 IDEVVLVGGSTRMPM---VQQLVRTLIPR--EPNQNVNPDEVVAVGAAIQAGI 376 (668)
T ss_pred CcEEEEECCccccHH---HHHHHHHHcCC--CcccCCCCchHHHHhHHHHHHh
Confidence 558999999886632 44444443321 1112223566788999998854
No 141
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=60.65 E-value=39 Score=33.23 Aligned_cols=74 Identities=20% Similarity=0.263 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCc-ccCcchhhhHHHHHHHHHhhCCCceeeCCCCChhHHHHHH
Q 023529 194 ILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGV-LEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGAALL 272 (281)
Q Consensus 194 il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv-~~~~~~~~l~~~i~~~l~~~~p~~~i~~~~~~~~~GAa~l 272 (281)
+++..-+-++.....++..+... +.++..|++.||. +++ +. +...+...+.. .+.+......+++||+++
T Consensus 410 ~~RAvlEgia~~~~~~l~~l~~~---g~~~~~i~~~GGg~a~s-~~--w~Qi~Adv~g~---pV~~~~~~e~~a~GaA~l 480 (536)
T TIGR01234 410 LYRALIEATAFGTRMIMETFTDS---GVPVEELMAAGGIARKN-PV--IMQIYADVTNR---PLQIVASDQAPALGAAIF 480 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc---CCCcceEEEeCCccccC-HH--HHHHHHHhhCC---eeEeccCCcchhHHHHHH
Confidence 33333444444444444444311 1337789999998 555 42 34433333332 233333445689999999
Q ss_pred HHhh
Q 023529 273 AWNS 276 (281)
Q Consensus 273 a~~~ 276 (281)
|.-.
T Consensus 481 A~~~ 484 (536)
T TIGR01234 481 AAVA 484 (536)
T ss_pred HHHH
Confidence 8643
No 142
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=60.48 E-value=39 Score=31.71 Aligned_cols=69 Identities=26% Similarity=0.355 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCcc-EEEEcCcccCcchhhhHHHHHHHHHhhC--CCceeeC-CCCC-hh
Q 023529 192 NKILQDSVEELALSVKAVVQRLSLSGEDGKHSFP-LVMVGGVLEANRRWDIGREVVKCILRDY--PGAVPIR-PKVE-PA 266 (281)
Q Consensus 192 ~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~-IvLgGgv~~~~~~~~l~~~i~~~l~~~~--p~~~i~~-~~~~-~~ 266 (281)
+..++++.-.+ +..++.... ... |+|+|||+.+-. ...+|.+.. .++-|-+ +.++ ..
T Consensus 143 Q~~~E~~v~~~---~~~~~~~~g--------~~~~L~laGGvaLN~~-------~N~~l~~~~~~~~v~V~Pa~gD~G~a 204 (360)
T PF02543_consen 143 QKVLEEIVLHL---VRHLLERTG--------IDNNLCLAGGVALNCK-------ANGRLLEEPGFDNVFVPPAAGDAGLA 204 (360)
T ss_dssp HHHHHHHHHHH---HHHHHHHHT----------SEEEEESGGGG-HH-------HHHHHHTSTT-SEEE--TTTSGGGHH
T ss_pred HHHHHHHHHHH---HHHHHHHhC--------CCCeEEEechHHHHHH-------HHHHHHhcCCCCeEEECCCCCCcchH
Confidence 45555555444 344444444 345 999999997742 344455542 2233322 2444 46
Q ss_pred HHHHHHHHhhhh
Q 023529 267 VGAALLAWNSFM 278 (281)
Q Consensus 267 ~GAa~la~~~~~ 278 (281)
+||++.+.....
T Consensus 205 iGaA~~~~~~~~ 216 (360)
T PF02543_consen 205 IGAALYAWHELG 216 (360)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc
Confidence 999999986554
No 143
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=60.43 E-value=20 Score=32.76 Aligned_cols=76 Identities=16% Similarity=0.125 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCCCCCCc-cEEEEcCcccCcchhhhHHHHHHHHHhhCCCceee-CCCCChhHHHH
Q 023529 193 KILQDSVEELALSVKAVVQRLSLSGEDGKHSF-PLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPI-RPKVEPAVGAA 270 (281)
Q Consensus 193 ~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~-~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~-~~~~~~~~GAa 270 (281)
+++....+.+...+...+...+.+.- ..... .|+|.||...... +.+.+++.+.. | +.+. .|..+.+.||+
T Consensus 251 e~i~~~~~~i~~~i~~~l~~~~~~~~-~~~~~~~IvL~GG~s~ipg---~~~~l~~~~~~--~-v~~~~~p~~ava~Ga~ 323 (335)
T PRK13930 251 EALAEPLQQIVEAVKSVLEKTPPELA-ADIIDRGIVLTGGGALLRG---LDKLLSEETGL--P-VHIAEDPLTCVARGTG 323 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHh-hHHHhCCEEEECchhcchh---HHHHHHHHHCC--C-ceecCCHHHHHHHHHH
Confidence 44444445555555555554431000 00012 4999999876532 55555554431 2 2222 23455779999
Q ss_pred HHHHh
Q 023529 271 LLAWN 275 (281)
Q Consensus 271 ~la~~ 275 (281)
..+.+
T Consensus 324 ~~~~~ 328 (335)
T PRK13930 324 KALEN 328 (335)
T ss_pred HHHhC
Confidence 98754
No 144
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=60.03 E-value=25 Score=32.22 Aligned_cols=76 Identities=17% Similarity=0.168 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCCCCCC-ccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeC-CCCChhHHHH
Q 023529 193 KILQDSVEELALSVKAVVQRLSLSGEDGKHS-FPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIR-PKVEPAVGAA 270 (281)
Q Consensus 193 ~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p-~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~-~~~~~~~GAa 270 (281)
++++...+.+...+...+...+.+- ....- ..|+|.||.+.-.. +.+.+++.+.. .+.+.. |..+.+.||+
T Consensus 246 eii~~~~~~i~~~i~~~l~~~~~~~-~~~~i~~~IvL~GG~s~ipg---i~e~l~~~~~~---~v~~~~~P~~ava~Gaa 318 (336)
T PRK13928 246 EALKEPVSAIVQAVKSVLERTPPEL-SADIIDRGIIMTGGGALLHG---LDKLLAEETKV---PVYIAEDPISCVALGTG 318 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccc-cHhhcCCCEEEECcccchhh---HHHHHHHHHCC---CceecCCHHHHHHHHHH
Confidence 4455555555555555555544100 00001 26999999775532 44555544432 233332 5566789999
Q ss_pred HHHHh
Q 023529 271 LLAWN 275 (281)
Q Consensus 271 ~la~~ 275 (281)
..+-+
T Consensus 319 ~~~~~ 323 (336)
T PRK13928 319 KMLEN 323 (336)
T ss_pred HHHhc
Confidence 98644
No 145
>PRK04123 ribulokinase; Provisional
Probab=59.52 E-value=38 Score=33.42 Aligned_cols=73 Identities=19% Similarity=0.256 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCc-ccCcchhhhHHHHHHHHHhhCCCceeeCCCCChhHHHHHH
Q 023529 194 ILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGV-LEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGAALL 272 (281)
Q Consensus 194 il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv-~~~~~~~~l~~~i~~~l~~~~p~~~i~~~~~~~~~GAa~l 272 (281)
+++..-+-++..+..++..+... +..+..|++.||. .++ +. +...+...+.. .+.+......+++||+++
T Consensus 413 l~RAvlEgia~~~~~~~e~l~~~---g~~~~~i~~~GGg~s~s-~~--w~Qi~ADv~g~---pV~~~~~~e~~alGaA~l 483 (548)
T PRK04123 413 IYRALIEATAFGTRAIMECFEDQ---GVPVEEVIAAGGIARKN-PV--LMQIYADVLNR---PIQVVASDQCPALGAAIF 483 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc---CCCcceEEEeCCCcccC-HH--HHHHHHHhcCC---ceEecCccccchHHHHHH
Confidence 33333444444444444444311 1236789999998 655 42 34444443332 232333456789999999
Q ss_pred HHh
Q 023529 273 AWN 275 (281)
Q Consensus 273 a~~ 275 (281)
|.-
T Consensus 484 A~~ 486 (548)
T PRK04123 484 AAV 486 (548)
T ss_pred HHH
Confidence 864
No 146
>PRK15027 xylulokinase; Provisional
Probab=58.65 E-value=45 Score=32.29 Aligned_cols=74 Identities=22% Similarity=0.171 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeC-CCCChhHH
Q 023529 190 VANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIR-PKVEPAVG 268 (281)
Q Consensus 190 ~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~-~~~~~~~G 268 (281)
.++.+++-.+-.+...+..+-. . +..+..|++.||..++ +. +...+...+.+ .+.+.. ....+++|
T Consensus 361 l~rAvlEgia~~~~~~~~~l~~-~------g~~~~~i~~~GGga~s-~~--w~Qi~Adv~g~---pv~~~~~~~~~~a~G 427 (484)
T PRK15027 361 LARAVLEGVGYALADGMDVVHA-C------GIKPQSVTLIGGGARS-EY--WRQMLADISGQ---QLDYRTGGDVGPALG 427 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-c------CCCccEEEEeCcccCC-HH--HHHHHHHHhCC---eEEeecCCCcchHHH
Confidence 4555555555555555444422 1 2236789999996655 42 34444443332 222222 23467999
Q ss_pred HHHHHHhh
Q 023529 269 AALLAWNS 276 (281)
Q Consensus 269 Aa~la~~~ 276 (281)
|+++|...
T Consensus 428 aA~lA~~~ 435 (484)
T PRK15027 428 AARLAQIA 435 (484)
T ss_pred HHHHHHHh
Confidence 99999643
No 147
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=58.63 E-value=24 Score=32.20 Aligned_cols=76 Identities=14% Similarity=0.078 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCCCCC-CccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceee-CCCCChhHHHH
Q 023529 193 KILQDSVEELALSVKAVVQRLSLSGEDGKH-SFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPI-RPKVEPAVGAA 270 (281)
Q Consensus 193 ~il~~aa~~l~~~i~~lv~~l~~~~~~~~~-p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~-~~~~~~~~GAa 270 (281)
+++......+...+...+...+.+.. ... ...|+|.||...... +.+.+++.+.. .+.+. .|..+.+.||+
T Consensus 247 e~i~~~~~~i~~~i~~~l~~~~~~~~-~~~~~~~IvL~GG~s~ipg---l~~~l~~~~~~---~v~~~~~P~~ava~Ga~ 319 (334)
T PRK13927 247 EALQEPLSAIVEAVKVALEQTPPELA-ADIVDRGIVLTGGGALLRG---LDKLLSEETGL---PVHVAEDPLTCVARGTG 319 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCchhh-hhhhcCCEEEECchhhhhH---HHHHHHHHHCC---CcEecCCHHHHHHHHHH
Confidence 34444445555555555554431000 000 124999999886643 55555554431 23333 25566789999
Q ss_pred HHHHh
Q 023529 271 LLAWN 275 (281)
Q Consensus 271 ~la~~ 275 (281)
..+-+
T Consensus 320 ~~~~~ 324 (334)
T PRK13927 320 KALEN 324 (334)
T ss_pred HHHhh
Confidence 98754
No 148
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=58.55 E-value=32 Score=32.74 Aligned_cols=73 Identities=19% Similarity=0.266 Sum_probs=47.6
Q ss_pred EEEec-CccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCccccc-----ee
Q 023529 25 LGLDG-GTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVR-----AV 98 (281)
Q Consensus 25 iGVD~-GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~-----~I 98 (281)
+|+|+ |||.+..-+-+. +|-.+......... .. ++.+++..+.+++=+++.|+....|. .|
T Consensus 1 lGlDl~GG~~~~~~~~~~---------~~~~~~~~~~~~~~---~~-~~~~~~~~~ii~~Rv~~~Gv~e~~i~~~G~~~I 67 (397)
T TIGR01129 1 LGLDLRGGARVLLEVDMS---------TAVVLKLSEAEVNA---IR-KDALEQVITILRNRVNALGVSEPVVQRQGKDRI 67 (397)
T ss_pred CcccCCCCeEEEEEEcCC---------cccccccchhcccc---cc-HHHHHHHHHHHHHHHhhcCCCCcEEEEeCCceE
Confidence 48899 999987776542 32112111111111 22 56678888999999999998876664 46
Q ss_pred EEcccCCCChhh
Q 023529 99 CLAVSGVNHPTD 110 (281)
Q Consensus 99 gig~~G~~~~~~ 110 (281)
-+-+||..+++.
T Consensus 68 ~V~lPg~~d~~~ 79 (397)
T TIGR01129 68 VVELPGVTDTSR 79 (397)
T ss_pred EEECCCCCCHHH
Confidence 789999887664
No 149
>PRK13411 molecular chaperone DnaK; Provisional
Probab=58.42 E-value=9.2 Score=38.78 Aligned_cols=49 Identities=22% Similarity=0.276 Sum_probs=28.9
Q ss_pred CccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeCCCCChhHHHHHHHHh
Q 023529 223 SFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGAALLAWN 275 (281)
Q Consensus 223 p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~~~~~~~~GAa~la~~ 275 (281)
...|+|.||....+. +.+.+++.+...-+ ..-..|..+.+.||++.|..
T Consensus 328 id~ViLvGGssriP~---v~~~l~~~f~~~~~-~~~~npdeaVA~GAAi~aa~ 376 (653)
T PRK13411 328 IDRVILVGGSTRIPA---VQEAIQKFFGGKQP-DRSVNPDEAVALGAAIQAGV 376 (653)
T ss_pred CcEEEEECCCCCcch---HHHHHHHHcCCcCc-CCCCCchHHHHHHHHHHHHh
Confidence 457999999987642 45555444321101 11123556678999998853
No 150
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=57.97 E-value=8.5 Score=34.85 Aligned_cols=53 Identities=25% Similarity=0.313 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHH
Q 023529 189 EVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCIL 250 (281)
Q Consensus 189 ~~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~ 250 (281)
+.|..+++.+.+.+...|..+......+ +.+.+++..||.... +.+.+.+.+.
T Consensus 211 ~~A~~i~~~~~~~m~~~i~~~~~~~g~~----~~~~~lv~~GG~g~~-----~~~~la~~lg 263 (290)
T PF01968_consen 211 EAAEGIVRIANENMADAIREVSVERGYD----PRDFPLVAFGGAGPL-----HAPELAEELG 263 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT------EEEE--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCC----ccccccccccccccc-----cccccccccc
Confidence 4677888888888988888774333211 235666666665522 5566666654
No 151
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=57.90 E-value=30 Score=30.80 Aligned_cols=63 Identities=13% Similarity=0.079 Sum_probs=40.8
Q ss_pred EEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCccccceeEEccc
Q 023529 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (281)
Q Consensus 24 viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~Igig~~ 103 (281)
.+.+|+|=|++++++++ +++.....+..+... ...|+.- ..+.+++..+ +..++.++.|...
T Consensus 2 ~L~iDiGNT~~~~a~~~----------~~~~~~~~r~~t~~~--~~~del~----~~~~~l~~~~--~~~~~~~~~issv 63 (251)
T COG1521 2 LLLIDIGNTRIVFALYE----------GGKVVQTWRLATEDL--LTEDELG----LQLHNLFDGN--SVRDIDGIVISSV 63 (251)
T ss_pred eEEEEeCCCeEEEEEec----------CCeEEEEEeeccccc--ccHHHHH----HHHHHHhccc--cccccccceeecc
Confidence 68999999999999998 788888888765332 3344543 3344444433 3445666655544
Q ss_pred C
Q 023529 104 G 104 (281)
Q Consensus 104 G 104 (281)
=
T Consensus 64 v 64 (251)
T COG1521 64 V 64 (251)
T ss_pred C
Confidence 3
No 152
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=56.99 E-value=9.3 Score=38.50 Aligned_cols=48 Identities=19% Similarity=0.190 Sum_probs=30.7
Q ss_pred CccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeCCCCChhHHHHHHHHh
Q 023529 223 SFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGAALLAWN 275 (281)
Q Consensus 223 p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~~~~~~~~GAa~la~~ 275 (281)
...|+|.||....+. +.+.+++.+.+ +......|..+.+.||++.|..
T Consensus 327 id~ViLvGGssriP~---v~~~l~~~fg~--~~~~~~npdeava~GAa~~aa~ 374 (627)
T PRK00290 327 IDEVILVGGSTRMPA---VQELVKEFFGK--EPNKGVNPDEVVAIGAAIQGGV 374 (627)
T ss_pred CcEEEEECCcCCChH---HHHHHHHHhCC--CCCcCcCChHHHHHhHHHHHHH
Confidence 568999999987632 56666555432 1112223566788999998864
No 153
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=56.53 E-value=18 Score=33.67 Aligned_cols=41 Identities=20% Similarity=0.101 Sum_probs=30.1
Q ss_pred EEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHHHHHHH
Q 023529 26 GLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARET 76 (281)
Q Consensus 26 GVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~ 76 (281)
|||=|++.+.++.+| +.|++....+.|+.... .++..+++.
T Consensus 1 GIDpGT~s~dv~~~d---------d~g~v~~~~~ipt~~v~-~~p~~iv~~ 41 (343)
T PF07318_consen 1 GIDPGTKSFDVCGLD---------DDGKVIFYFSIPTEEVA-KNPSIIVEE 41 (343)
T ss_pred CCCCCCCcEEEEEEc---------cCCcEEEEeeccHHHhh-hCHHHHHHH
Confidence 789999999999999 25999999988864433 344444433
No 154
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=56.48 E-value=43 Score=29.62 Aligned_cols=76 Identities=18% Similarity=0.256 Sum_probs=53.5
Q ss_pred EEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEec----CCC-CCc-cCCHHHHHHHHHHHHHHHHHHcCCCccccc
Q 023529 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAA----GCS-NHN-SVGEDAARETIEKVMADALLKSGSNRSAVR 96 (281)
Q Consensus 23 ~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~----~~~-~~~-~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~ 96 (281)
..+|+++...|+-++++. +|++++-.+- |+. .+. ......-.+.+..++++++++++++..+|.
T Consensus 3 ialG~EGSANKlGvGiv~----------~~~iLaN~R~TYitPPG~GFlP~~TA~HHr~~il~Lv~~al~ea~v~~~diD 72 (336)
T KOG2708|consen 3 IALGLEGSANKLGVGIVR----------DGKILANPRHTYITPPGEGFLPRDTARHHRAWILGLVKQALEEAGVTSDDID 72 (336)
T ss_pred eEEecccccccceeeEEe----------cceeecCccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHcCCChhhCC
Confidence 568999999999999987 7888864432 221 111 123445567899999999999999999998
Q ss_pred eeEEcc-cCCCCh
Q 023529 97 AVCLAV-SGVNHP 108 (281)
Q Consensus 97 ~Igig~-~G~~~~ 108 (281)
.|+.-= ||...|
T Consensus 73 ~icyTKGPGmgaP 85 (336)
T KOG2708|consen 73 CICYTKGPGMGAP 85 (336)
T ss_pred EEEEcCCCCCCCc
Confidence 886432 455444
No 155
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=56.07 E-value=43 Score=30.70 Aligned_cols=52 Identities=13% Similarity=0.188 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHh
Q 023529 189 EVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILR 251 (281)
Q Consensus 189 ~~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~ 251 (281)
..|..+-+...+.|.+.+.......+ -..|+|+|||+.+.. +.+.+.+.+.+
T Consensus 217 diAasfq~~l~~~l~~~a~~~~~~~g--------~~~lvlsGGVa~N~~---L~~~l~~~l~~ 268 (322)
T TIGR03722 217 DVCYSLQETAFAMLVEVTERALAHTG--------KKEVLLVGGVAANRR---LREMLELMAED 268 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC--------CCeEEEeccHHHHHH---HHHHHHHHHHH
Confidence 35666666666666666666666555 457999999998854 78888887765
No 156
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=55.74 E-value=53 Score=32.11 Aligned_cols=74 Identities=19% Similarity=0.085 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeCCCCChhHH
Q 023529 189 EVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVG 268 (281)
Q Consensus 189 ~~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~~~~~~~~G 268 (281)
..++.+++-.+-.+...+..+....+. .+..|++.||-..+ +. +...+...+.. .+.+......+..|
T Consensus 374 ~l~ravlEgva~~l~~~~~~l~~~~g~------~~~~i~~~GGgars-~~--w~Qi~Ad~~g~---~v~~~~~~e~~a~g 441 (502)
T COG1070 374 HLARAVLEGVAFALADGLEALEELGGK------PPSRVRVVGGGARS-PL--WLQILADALGL---PVVVPEVEEAGALG 441 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC------CccEEEEECCcccC-HH--HHHHHHHHcCC---eeEecCcccchHHH
Confidence 578899999999999999988887563 36679999999877 32 34444443332 22222223455455
Q ss_pred HHHHHH
Q 023529 269 AALLAW 274 (281)
Q Consensus 269 Aa~la~ 274 (281)
+++++.
T Consensus 442 ~A~~~~ 447 (502)
T COG1070 442 GAALAA 447 (502)
T ss_pred HHHHHH
Confidence 554443
No 157
>PLN02295 glycerol kinase
Probab=54.37 E-value=48 Score=32.40 Aligned_cols=78 Identities=18% Similarity=0.103 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeCCCCChhHHH
Q 023529 190 VANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGA 269 (281)
Q Consensus 190 ~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~~~~~~~~GA 269 (281)
.++.+++-.+-.+...+..+-..... .+.+..+..|.+.||..++ +. +...+...+.. .+........+++||
T Consensus 381 l~RAvlEgia~~~r~~l~~l~~~~~~-~~~~~~~~~i~~~GGga~s-~~--w~Qi~ADv~g~---pV~~~~~~e~~alGa 453 (512)
T PLN02295 381 IARAVLESMCFQVKDVLDAMRKDAGE-EKSHKGLFLLRVDGGATAN-NL--LMQIQADLLGS---PVVRPADIETTALGA 453 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc-cccCCCcceEEEeccchhC-HH--HHHHHHHhcCC---ceEecCccccHHHHH
Confidence 44555555555555544444322000 0001126678888887765 32 44444444443 222223345689999
Q ss_pred HHHHH
Q 023529 270 ALLAW 274 (281)
Q Consensus 270 a~la~ 274 (281)
+++|.
T Consensus 454 A~~A~ 458 (512)
T PLN02295 454 AYAAG 458 (512)
T ss_pred HHHHH
Confidence 99985
No 158
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=54.32 E-value=20 Score=33.08 Aligned_cols=69 Identities=22% Similarity=0.247 Sum_probs=34.9
Q ss_pred EEecCccceeeeeeecccCCCCCCCCC--CeEEEEecCCC-CCccCCHHHHHHHHHHHHHHHHHHcCCCccccceeEEcc
Q 023529 26 GLDGGTTSTVCICMPVISMSDSLPDPL--PVLARAAAGCS-NHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (281)
Q Consensus 26 GVD~GgT~~~~~l~d~~~~~~~~~~~g--~il~~~~~~~~-~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~Igig~ 102 (281)
|||+|...++++.... ..+ .+......+.+ +....+.-.=.+.+.+.+++++++.+... +.+.+++
T Consensus 1 GiDiG~~siK~v~l~~--------~~~~~~l~~~~~~~~p~~~i~~g~i~d~~~l~~~L~~~~~~~~~~~---k~v~~ai 69 (340)
T PF11104_consen 1 GIDIGSSSIKAVELSK--------KGNRFQLEAFASIPLPPGAISDGEIVDPEALAEALKELLKENKIKG---KKVVLAI 69 (340)
T ss_dssp EEEE-SSEEEEEEEET--------TTT--EEEEEEEEE--TTSEETTEES-HHHHHHHHHHHHHHHT-------EEEEEE
T ss_pred CeecCCCeEEEEEEEE--------cCCccEEEEEEEEECCCCCccCCCcCCHHHHHHHHHHHHHHcCCCC---CeEEEEe
Confidence 8999999999999884 122 23333343322 11111211112456677777777777643 3455677
Q ss_pred cCC
Q 023529 103 SGV 105 (281)
Q Consensus 103 ~G~ 105 (281)
||.
T Consensus 70 p~~ 72 (340)
T PF11104_consen 70 PGS 72 (340)
T ss_dssp -GG
T ss_pred CCC
Confidence 775
No 159
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=53.16 E-value=23 Score=32.89 Aligned_cols=47 Identities=26% Similarity=0.297 Sum_probs=35.1
Q ss_pred ccEEEEcCcccCcchhhhHHHHHHHHHhhCCC-----ceeeC---CCCChhHHHHHHH
Q 023529 224 FPLVMVGGVLEANRRWDIGREVVKCILRDYPG-----AVPIR---PKVEPAVGAALLA 273 (281)
Q Consensus 224 ~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~-----~~i~~---~~~~~~~GAa~la 273 (281)
..|+|.||.+.-.. |.+.+++.+....|. +.+.. +...+-.||..+|
T Consensus 291 ~~Ivl~GG~s~~~g---l~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~a 345 (371)
T cd00012 291 SNIVLSGGSTLFPG---FGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILA 345 (371)
T ss_pred hCEEEeCCccCCcC---HHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhc
Confidence 46999999998765 899999999988765 23322 3455678888877
No 160
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=53.09 E-value=14 Score=34.11 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcc
Q 023529 189 EVANKILQDSVEELALSVKAVVQRLS 214 (281)
Q Consensus 189 ~~A~~il~~aa~~l~~~i~~lv~~l~ 214 (281)
..|..+++.+-+.++.++..+.....
T Consensus 252 ~~A~~i~~~~~~~m~~ai~~v~~~~G 277 (318)
T TIGR03123 252 NLAKYYYEAQLEQLTEAIEEVLERYG 277 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 36778888888889999988877666
No 161
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=51.10 E-value=35 Score=26.74 Aligned_cols=37 Identities=8% Similarity=0.178 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHcCCCccccceeEEcccC
Q 023529 68 VGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (281)
Q Consensus 68 ~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~Igig~~G 104 (281)
..++++.+...+++++++++.++++++|.+|-+.+..
T Consensus 13 n~~e~I~~at~eLl~~i~~~N~l~~~dIvSi~FT~T~ 49 (118)
T PF07736_consen 13 NTPEEILEATRELLEEILERNELSPEDIVSIIFTVTP 49 (118)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEE-T
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEeCC
Confidence 4679999999999999999999999999999888764
No 162
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=50.92 E-value=63 Score=26.59 Aligned_cols=54 Identities=15% Similarity=0.046 Sum_probs=37.7
Q ss_pred EEEEecCccceeeeeeecccCCCCCCCCCCe---EEEEecCCCCCccCCHHHHHHHHHHHHHHHHHHcC
Q 023529 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPV---LARAAAGCSNHNSVGEDAARETIEKVMADALLKSG 89 (281)
Q Consensus 24 viGVD~GgT~~~~~l~d~~~~~~~~~~~g~i---l~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g 89 (281)
++|||=|-+.|=.++++. .++. +......+. . .+..+-+..|.+.+.+++++..
T Consensus 1 ILGIDPGl~~tG~gvi~~---------~~~~~~~v~~G~I~t~-~--~~~~~RL~~I~~~l~~~i~~y~ 57 (156)
T TIGR00228 1 ILGIDPGSRVTGYGVIRQ---------VGRQLSYLGSGCIRTK-V--DDLPSRLKLIYAGVTEIITQFQ 57 (156)
T ss_pred CEeECcccccccEEEEEe---------cCCeEEEEEeeEEECC-C--CCHHHHHHHHHHHHHHHHHHhC
Confidence 589999999999999985 3333 333333332 2 3556667888899999998754
No 163
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=50.45 E-value=67 Score=29.87 Aligned_cols=47 Identities=19% Similarity=0.276 Sum_probs=34.3
Q ss_pred ccEEEEcCcccCcchhhhHHHHHHHHHhhCC---CceeeCC----CCChhHHHHHHH
Q 023529 224 FPLVMVGGVLEANRRWDIGREVVKCILRDYP---GAVPIRP----KVEPAVGAALLA 273 (281)
Q Consensus 224 ~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p---~~~i~~~----~~~~~~GAa~la 273 (281)
..|+|.||...... |.+.+++.|.+..| .+++..+ ..++-+||..+|
T Consensus 312 ~nIvl~GG~S~i~G---~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsila 365 (393)
T PF00022_consen 312 SNIVLTGGSSLIPG---FKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILA 365 (393)
T ss_dssp TTEEEESGGGGSTT---HHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHH
T ss_pred cceEEecccccccc---hHHHHHHHhhhhhhccccceeccCchhhhhcccccceeee
Confidence 37999999887765 89999999998753 3455443 334779999887
No 164
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=50.39 E-value=1.1e+02 Score=28.49 Aligned_cols=75 Identities=15% Similarity=0.035 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhC-CCceeeC---CCC
Q 023529 188 DEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDY-PGAVPIR---PKV 263 (281)
Q Consensus 188 D~~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~-p~~~i~~---~~~ 263 (281)
...|+.++.-.+..++..........+ -..|+++|+.+..++ ..++.+...+.-.. ..++... ..+
T Consensus 261 ~Dia~sll~mv~~nIg~la~l~A~~~~--------~~~I~f~G~~~~~~~--~~~~~l~~a~~~~s~~~~~~~fl~h~gy 330 (341)
T PF03630_consen 261 EDIAKSLLNMVSNNIGQLAYLHAKIHG--------VKRIVFGGSFIRNNP--ITMRTLSYAINFWSKGELKALFLRHEGY 330 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT----------EEEEESGGGTSSC--HHHHHHHHHHHHHTTTS-EEEEETTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC--------CCEEEEEeccccCCH--HHHHHHHHHHHHhccCCceEEEecCCch
Confidence 347889999999999999988888888 669999999998876 26777775554332 3444433 345
Q ss_pred ChhHHHHHH
Q 023529 264 EPAVGAALL 272 (281)
Q Consensus 264 ~~~~GAa~l 272 (281)
.+++||.+.
T Consensus 331 ~galGa~l~ 339 (341)
T PF03630_consen 331 LGALGAFLK 339 (341)
T ss_dssp HHHHHHHHT
T ss_pred hHHHHHHHh
Confidence 578888763
No 165
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=49.70 E-value=49 Score=32.65 Aligned_cols=73 Identities=19% Similarity=0.191 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeCCCCChhHHHHHH
Q 023529 193 KILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGAALL 272 (281)
Q Consensus 193 ~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~~~~~~~~GAa~l 272 (281)
.+.......++.+..+++..|+-.| -.-+.|+.+||. ..++ ++++.......+ .+.+....++.++|++++
T Consensus 405 ~lY~a~l~a~A~GtR~Iie~~~~~g---~~Id~l~~sGG~-~KN~--llmql~aDvtg~---~v~i~~s~~a~llGsAm~ 475 (544)
T COG1069 405 LLYRALLEATAFGTRAIIETFEDQG---IAIDTLFASGGI-RKNP--LLMQLYADVTGR---PVVIPASDQAVLLGAAMF 475 (544)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHcC---CeeeEEEecCCc-ccCH--HHHHHHHHhcCC---eEEeecccchhhhHHHHH
Confidence 6777888899999999999888433 346689999999 5555 266666665543 345555667788999887
Q ss_pred HH
Q 023529 273 AW 274 (281)
Q Consensus 273 a~ 274 (281)
+.
T Consensus 476 ~a 477 (544)
T COG1069 476 AA 477 (544)
T ss_pred HH
Confidence 63
No 166
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=49.26 E-value=54 Score=32.35 Aligned_cols=73 Identities=15% Similarity=0.168 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeCCCCChhHHHHHHH
Q 023529 194 ILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGAALLA 273 (281)
Q Consensus 194 il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~~~~~~~~GAa~la 273 (281)
+++..-+-++..+..++..+.-. +..+..|.+.||.+++ +. +...+...+.. .+........+++||+++|
T Consensus 418 ~~rAvlEgiaf~~r~~~e~l~~~---g~~~~~i~~~GGga~s-~~--w~Qi~ADvlg~---pV~~~~~~e~~alGaA~lA 488 (541)
T TIGR01315 418 LYYATMEFIAYGTRQIVEAMNTA---GHTIKSIFMSGGQCQN-PL--LMQLIADACDM---PVLIPYVNEAVLHGAAMLG 488 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc---CCCccEEEEecCcccC-HH--HHHHHHHHHCC---eeEecChhHHHHHHHHHHH
Confidence 33444444444444444444311 1236679999998766 32 34444444432 2222223345789999998
Q ss_pred Hh
Q 023529 274 WN 275 (281)
Q Consensus 274 ~~ 275 (281)
.-
T Consensus 489 ~~ 490 (541)
T TIGR01315 489 AK 490 (541)
T ss_pred HH
Confidence 53
No 167
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=49.15 E-value=63 Score=31.03 Aligned_cols=74 Identities=12% Similarity=0.054 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeCCCCChhHHH
Q 023529 190 VANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGA 269 (281)
Q Consensus 190 ~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~~~~~~~~GA 269 (281)
..+.+++-.+-.+...+..+-..-+ ..+..|.+.||...+ +. +...+...+.. .+. ......+++||
T Consensus 361 l~RAv~Egva~~~r~~~e~l~~~~~------~~~~~i~~~GGga~s-~~--w~Qi~ADvlg~---pV~-~~~~e~~a~Ga 427 (454)
T TIGR02627 361 LARCIFDSLALLYRQVLLELAELRG------KPISQLHIVGGGSQN-AF--LNQLCADACGI---RVI-AGPVEASTLGN 427 (454)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC------CCcCEEEEECChhhh-HH--HHHHHHHHhCC---ceE-cCCchHHHHHH
Confidence 4555666555555555555533212 126788888887655 42 44555544443 222 22334678999
Q ss_pred HHHHHhh
Q 023529 270 ALLAWNS 276 (281)
Q Consensus 270 a~la~~~ 276 (281)
+++|.-.
T Consensus 428 A~~a~~~ 434 (454)
T TIGR02627 428 IGVQLMA 434 (454)
T ss_pred HHHHHHh
Confidence 9998643
No 168
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=47.95 E-value=68 Score=31.06 Aligned_cols=73 Identities=14% Similarity=0.029 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeCC-CCChhHH
Q 023529 190 VANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRP-KVEPAVG 268 (281)
Q Consensus 190 ~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~~-~~~~~~G 268 (281)
.++.+++-.+-.+...+..+-...+ ..+..|.+.||..++ +. +.+.+...+.. .+..+ ...+.+|
T Consensus 349 l~RAvlEgva~~~r~~l~~l~~~~g------~~~~~i~~~GGga~s-~~--w~Qi~ADvlg~-----pV~~~~~ea~alG 414 (471)
T PRK10640 349 LARCIFDSLALLYADVLHELAQLRG------EPFSQLHIVGGGCQN-AL--LNQLCADACGI-----RVIAGPVEASTLG 414 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC------CCcceEEEECChhhh-HH--HHHHHHHHhCC-----CeeeCChhHHHHH
Confidence 5666666666666666666644322 225788888887766 31 44444444442 22222 3467899
Q ss_pred HHHHHHhh
Q 023529 269 AALLAWNS 276 (281)
Q Consensus 269 Aa~la~~~ 276 (281)
|+++|.-.
T Consensus 415 aa~~a~~a 422 (471)
T PRK10640 415 NIGIQLMT 422 (471)
T ss_pred HHHHHHHH
Confidence 99998643
No 169
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=47.42 E-value=58 Score=27.67 Aligned_cols=17 Identities=29% Similarity=0.223 Sum_probs=15.0
Q ss_pred EEEEecCccceeeeeee
Q 023529 24 ILGLDGGTTSTVCICMP 40 (281)
Q Consensus 24 viGVD~GgT~~~~~l~d 40 (281)
+|.||+|=|++++++++
T Consensus 1 ~L~iDiGNT~ik~~~~~ 17 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFD 17 (206)
T ss_dssp EEEEEE-SSEEEEEEEE
T ss_pred CEEEEECCCeEEEEEEE
Confidence 57899999999999998
No 170
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=47.00 E-value=1.5e+02 Score=27.94 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeCC-------CC
Q 023529 191 ANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRP-------KV 263 (281)
Q Consensus 191 A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~~-------~~ 263 (281)
...++.-..+.-+..|+.-++.+.. .|..|+++||=..+. .+++.+++.+. .+.+... +.
T Consensus 259 ~~D~~aTlt~~TA~sI~~~i~~~~~------~~~~v~v~GGGa~N~---~L~~~L~~~l~----~~~v~~~~~~gi~~~~ 325 (364)
T PF03702_consen 259 PEDILATLTEFTAQSIADAIRRFPP------QPDEVYVCGGGARNP---FLMERLQERLP----GIPVKTTDELGIPPDA 325 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-T------T-EEEEEESGGGG-H---HHHHHHHHH-T----TCEEEEGGGGTS-CCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCC------CCceEEEECCCcCCH---HHHHHHHhhCC----CCEEecHHHcCCCHHH
Confidence 4566677777777777777777661 256777777766553 26666666554 4444321 22
Q ss_pred ChhHHHHHHHHhhhhc
Q 023529 264 EPAVGAALLAWNSFMN 279 (281)
Q Consensus 264 ~~~~GAa~la~~~~~~ 279 (281)
--...=|+||++.+.+
T Consensus 326 ~EA~aFA~La~~~~~g 341 (364)
T PF03702_consen 326 KEAMAFAWLAYRRLNG 341 (364)
T ss_dssp HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcC
Confidence 2456667777766554
No 171
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=46.94 E-value=16 Score=36.47 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=29.9
Q ss_pred CccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeCCCCChhHHHHHHHHh
Q 023529 223 SFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGAALLAWN 275 (281)
Q Consensus 223 p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~~~~~~~~GAa~la~~ 275 (281)
...|+|.||....+. +.+.+++.+.. +......|..+.+.||++.|..
T Consensus 325 i~~V~LvGGssriP~---v~~~i~~~f~~--~~~~~~~pdeava~GAa~~aa~ 372 (595)
T TIGR02350 325 IDEVILVGGSTRIPA---VQELVKDFFGK--EPNKSVNPDEVVAIGAAIQGGV 372 (595)
T ss_pred CcEEEEECCcccChH---HHHHHHHHhCC--cccCCcCcHHHHHHHHHHHHHH
Confidence 457999999987632 55555554432 1112223556678999998864
No 172
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=46.81 E-value=17 Score=36.59 Aligned_cols=48 Identities=31% Similarity=0.324 Sum_probs=30.5
Q ss_pred CccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeCCCCChhHHHHHHHHh
Q 023529 223 SFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGAALLAWN 275 (281)
Q Consensus 223 p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~~~~~~~~GAa~la~~ 275 (281)
...|+|.||....+. +.+.+++.+... + ..-..|..+.+.||++.|..
T Consensus 329 i~~ViLvGGssriP~---v~~~l~~~fg~~-~-~~~~npdeaVA~GAAi~a~~ 376 (616)
T PRK05183 329 VKEVVMVGGSTRVPL---VREAVGEFFGRT-P-LTSIDPDKVVAIGAAIQADI 376 (616)
T ss_pred CCEEEEECCcccChH---HHHHHHHHhccC-c-CcCCCchHHHHHHHHHHHHH
Confidence 568999999987732 555555544321 1 11223566788999998854
No 173
>PTZ00452 actin; Provisional
Probab=46.50 E-value=27 Score=32.79 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=34.4
Q ss_pred cEEEEcCcccCcchhhhHHHHHHHHHhhCCC---ceeeCC---CCChhHHHHHHH
Q 023529 225 PLVMVGGVLEANRRWDIGREVVKCILRDYPG---AVPIRP---KVEPAVGAALLA 273 (281)
Q Consensus 225 ~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~---~~i~~~---~~~~~~GAa~la 273 (281)
.|||.||...... |.++++..|.+..|. +++..+ .+++-+||..+|
T Consensus 296 nIvL~GG~Sl~~G---f~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSila 347 (375)
T PTZ00452 296 NIVLSGGTTLFPG---IANRLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQC 347 (375)
T ss_pred cEEEecccccccC---HHHHHHHHHHHhCCCCceeEEecCCCcceeEEECchhhc
Confidence 6999999887765 899999999998753 344432 345678888876
No 174
>PRK11678 putative chaperone; Provisional
Probab=46.36 E-value=16 Score=35.30 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=15.7
Q ss_pred EEEEecCccceeeeeee
Q 023529 24 ILGLDGGTTSTVCICMP 40 (281)
Q Consensus 24 viGVD~GgT~~~~~l~d 40 (281)
++|||+|+|++.+++++
T Consensus 2 ~iGID~GTtNs~va~~~ 18 (450)
T PRK11678 2 FIGFDYGTANCSVAVMR 18 (450)
T ss_pred eEEEecCccceeeEEee
Confidence 68999999999999986
No 175
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=46.21 E-value=34 Score=33.25 Aligned_cols=82 Identities=18% Similarity=0.268 Sum_probs=44.8
Q ss_pred EEEEEecCccceeeeeeeccc--C-CC-CCCC----CCCeEEEEecCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCccc
Q 023529 23 VILGLDGGTTSTVCICMPVIS--M-SD-SLPD----PLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSA 94 (281)
Q Consensus 23 ~viGVD~GgT~~~~~l~d~~~--~-~~-~~~~----~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~ 94 (281)
.-+|||+|.|+|++++-.+.= + +. ++|. +-+++++...-.+.....+ .-=.+.+.+.|++-.+++|+.+++
T Consensus 4 ~SVGIDIGTSTTQlvfSrl~l~n~a~~~~vPri~I~dkeViYrS~I~fTPl~~~~-~ID~~al~~iv~~eY~~Agi~p~~ 82 (473)
T PF06277_consen 4 LSVGIDIGTSTTQLVFSRLTLENRASGFSVPRIEIVDKEVIYRSPIYFTPLLSQT-EIDAEALKEIVEEEYRKAGITPED 82 (473)
T ss_pred EEEEEeecCCceeEEEEEeEEEeccCCCccceEEEeccEEEecCCccccCCCCCC-ccCHHHHHHHHHHHHHHcCCCHHH
Confidence 468999999999887654200 0 00 1110 0123333322212111111 101256677788888899999999
Q ss_pred cceeEEcccCC
Q 023529 95 VRAVCLAVSGV 105 (281)
Q Consensus 95 i~~Igig~~G~ 105 (281)
|..=.+=+.|=
T Consensus 83 I~TGAVIITGE 93 (473)
T PF06277_consen 83 IDTGAVIITGE 93 (473)
T ss_pred CccccEEEecc
Confidence 88755666664
No 176
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=45.94 E-value=16 Score=36.23 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=28.0
Q ss_pred CccEEEEcCcccCcchhhhHHHHHHHHHhhCCCc--eeeCCCCChhHHHHHHHHh
Q 023529 223 SFPLVMVGGVLEANRRWDIGREVVKCILRDYPGA--VPIRPKVEPAVGAALLAWN 275 (281)
Q Consensus 223 p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~--~i~~~~~~~~~GAa~la~~ 275 (281)
...|+|.||....+. +.+.+++ .++.. ....|..+.+.||++.|..
T Consensus 329 i~~V~lvGG~sr~p~---v~~~l~~----~f~~~~~~~~~p~~aVA~GAa~~a~~ 376 (602)
T PF00012_consen 329 IDSVLLVGGSSRIPY---VQEALKE----LFGKKISKSVNPDEAVARGAALYAAI 376 (602)
T ss_dssp ESEEEEESGGGGSHH---HHHHHHH----HTTSEEB-SS-TTTHHHHHHHHHHHH
T ss_pred cceeEEecCcccchh---hhhhhhh----ccccccccccccccccccccccchhh
Confidence 568999999886631 4444444 44321 1113556678999999853
No 177
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=44.24 E-value=20 Score=35.55 Aligned_cols=15 Identities=20% Similarity=0.195 Sum_probs=6.8
Q ss_pred cceeEEcccCCCChh
Q 023529 95 VRAVCLAVSGVNHPT 109 (281)
Q Consensus 95 i~~Igig~~G~~~~~ 109 (281)
+..+.|.+|..-+..
T Consensus 135 ~~~~vitVPa~~~~~ 149 (602)
T PF00012_consen 135 VTDVVITVPAYFTDE 149 (602)
T ss_dssp EEEEEEEE-TT--HH
T ss_pred cccceeeechhhhhh
Confidence 455666666665443
No 178
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=43.59 E-value=1.6e+02 Score=28.86 Aligned_cols=71 Identities=21% Similarity=0.155 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeCCC--CChhH
Q 023529 190 VANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPK--VEPAV 267 (281)
Q Consensus 190 ~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~~~--~~~~~ 267 (281)
.|+..|+..+-..-..+..|-.... .+...+-+.||+..++ | +++.....+. +++.+|. .-.++
T Consensus 376 i~RA~LEsiayQ~~dv~~aM~~d~~------~~~~~LrvDGG~s~n~--~-lmQfqADilg-----~~V~Rp~~~EtTAl 441 (499)
T COG0554 376 IARATLESIAYQTRDVLEAMEKDSG------IKLTRLRVDGGASRNN--F-LMQFQADILG-----VPVERPVVLETTAL 441 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC------CCceeEEEcCccccch--h-HHHHHHHHhC-----CeeeccccchhhHH
Confidence 4444444444444444444443333 2477899999999874 2 4544444333 4555553 34789
Q ss_pred HHHHHHH
Q 023529 268 GAALLAW 274 (281)
Q Consensus 268 GAa~la~ 274 (281)
||+++|-
T Consensus 442 GaA~lAG 448 (499)
T COG0554 442 GAAYLAG 448 (499)
T ss_pred HHHHHHh
Confidence 9999984
No 179
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=43.05 E-value=53 Score=31.99 Aligned_cols=89 Identities=19% Similarity=0.204 Sum_probs=53.7
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHcccCC-----------CCCCCCccEEEEcCcccCc------chh---hhHH
Q 023529 184 AEAGDEVANKILQDSVEELALSVKAVVQRLSLSG-----------EDGKHSFPLVMVGGVLEAN------RRW---DIGR 243 (281)
Q Consensus 184 A~~GD~~A~~il~~aa~~l~~~i~~lv~~l~~~~-----------~~~~~p~~IvLgGgv~~~~------~~~---~l~~ 243 (281)
...||....+-+++.++.++..+..++. -+... ....+++.|.++|||..+- ++| ++-.
T Consensus 207 ~~~G~~~~~~~L~~i~~~Ma~~l~~~i~-~~~~~~~~~l~~~~~l~~~~~~~~i~fSGGVad~iy~~~~~~~f~yGDiG~ 285 (475)
T PRK10719 207 ITDGRSLTGEQLQQVTRRMAELLVEVIG-GALSPLAQALMTTKLLPAGVPPEIITFSGGVGDCIYRHQPADPFRYGDIGP 285 (475)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHhC-CCCChhHHhhccCCCCCCCCCCCEEEEecchHhheecCCcCCccccCcHHH
Confidence 3567777777788888888888877766 22111 1134578999999998762 111 2334
Q ss_pred HHHHHHHhhC--CCceeeCCC---CChhHHHHHHH
Q 023529 244 EVVKCILRDY--PGAVPIRPK---VEPAVGAALLA 273 (281)
Q Consensus 244 ~i~~~l~~~~--p~~~i~~~~---~~~~~GAa~la 273 (281)
.+-+.|+++. ...++..|. .+.++||....
T Consensus 286 lLg~ai~~~~~~~~~~v~~p~eTiRATViGAG~ht 320 (475)
T PRK10719 286 LLATALHEHPRLREMNVQFPAETVRATVIGAGAHT 320 (475)
T ss_pred HHHHHHhhChhcccCcEeCCCCcceeEEEecCcce
Confidence 5556665542 344454442 45777776543
No 180
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=42.74 E-value=48 Score=33.75 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=23.3
Q ss_pred ccccchhcCCCcEEEEEecCccceeeeeee
Q 023529 11 DFETAEESGGREVILGLDGGTTSTVCICMP 40 (281)
Q Consensus 11 ~~~~~~~~~~~~~viGVD~GgT~~~~~l~d 40 (281)
.|++.....+..+++|||+|.|++.+++++
T Consensus 16 ~~~~~~~~~~~~~viGIDLGTTnS~vA~~~ 45 (657)
T PTZ00186 16 RLARHESQKVQGDVIGVDLGTTYSCVATMD 45 (657)
T ss_pred cccccccCcccceEEEEEeCcCeEEEEEEe
Confidence 344445555667899999999999998886
No 181
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=42.23 E-value=52 Score=33.07 Aligned_cols=48 Identities=29% Similarity=0.228 Sum_probs=30.5
Q ss_pred CccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeCCCCChhHHHHHHHHh
Q 023529 223 SFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGAALLAWN 275 (281)
Q Consensus 223 p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~~~~~~~~GAa~la~~ 275 (281)
...|+|.||....+. +.+.+++.+.. +...-..|..+.+.||++.|..
T Consensus 309 Id~ViLvGGssriP~---v~~~l~~~f~~--~~~~~~npdeaVA~GAAi~a~~ 356 (595)
T PRK01433 309 IDGVILVGGATRIPL---IKDELYKAFKV--DILSDIDPDKAVVWGAALQAEN 356 (595)
T ss_pred CcEEEEECCcccChh---HHHHHHHHhCC--CceecCCchHHHHHHHHHHHHH
Confidence 578999999987632 55555544421 1112224566788999999865
No 182
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=42.16 E-value=31 Score=27.34 Aligned_cols=17 Identities=41% Similarity=0.397 Sum_probs=15.0
Q ss_pred EEEecCccceeeeeeec
Q 023529 25 LGLDGGTTSTVCICMPV 41 (281)
Q Consensus 25 iGVD~GgT~~~~~l~d~ 41 (281)
+|+|.|..+|=+++.|.
T Consensus 1 laiD~G~kriGvA~~d~ 17 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDI 17 (130)
T ss_pred CeEccCCCeEEEEEECC
Confidence 58999999999998883
No 183
>PF05035 DGOK: 2-keto-3-deoxy-galactonokinase; InterPro: IPR007729 2-keto-3-deoxy-galactonokinase 2.7.1.58 from EC is a bacterial transferase that catalyses the second step in D-galactonate degradation. ATP + 2-dehydro-3-deoxy-D-galactonate = ADP + 2-dehydro-3-deoxy-D-galactonate 6-phosphate D-Galactonate is catabolized in saprophytic mycobacteria to give pyruvate and glyceraldehyde-3-phosphate by a pathway that involves galactonate dehydratase, 2-keto-3-deoxy-galactonate kinase, and 6-phospho-2-keto-3-deoxy-galactonate aldolase [].; PDB: 3R1X_D 3T69_B.
Probab=42.13 E-value=13 Score=33.78 Aligned_cols=63 Identities=17% Similarity=0.192 Sum_probs=31.9
Q ss_pred ecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCccccceeEEcccCC
Q 023529 28 DGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGV 105 (281)
Q Consensus 28 D~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~Igig~~G~ 105 (281)
|-|+|++|+.++|- +|+++.+.+.+.. ......+..-+.+.+++.+.+.. .++--|.-|+.|.
T Consensus 1 DWGTSnlR~~l~~~---------~g~vl~~~~~~~G-i~~~~~~~f~~~l~~~~~~w~~~-----~~~pvi~~GMigS 63 (287)
T PF05035_consen 1 DWGTSNLRAWLMDE---------DGQVLAERSSPVG-ILNLAPDGFEAVLRELLGDWLAA-----PPLPVIASGMIGS 63 (287)
T ss_dssp EE-SS-EEEEEE-C---------TTEEEEEEEES---CCHHCCH-HCHHHHHHCCCTT-S-----TT--EEEECGGGS
T ss_pred CCchhhhhhheecC---------CCcEEeeecCCcC-hhhcCcccHHHHHHHHHHHHhhc-----CCCeEEEeCCccc
Confidence 77999999999984 8999998886532 11112233333334444433332 2334555677664
No 184
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=41.53 E-value=68 Score=32.79 Aligned_cols=52 Identities=17% Similarity=0.280 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhh
Q 023529 190 VANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRD 252 (281)
Q Consensus 190 ~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~ 252 (281)
.|.+.....++-+++.+..+.+... =.+|+|+|||+.+.. +...+.+.+++.
T Consensus 669 iA~~fh~~la~~~~e~~~~~a~~~g--------i~~V~lsGGVf~N~~---l~~~~~~~l~~~ 720 (750)
T COG0068 669 IATKFHNALAEGFAELAVELAKKYG--------INKVVLSGGVFQNRL---LLERLAKYLKKE 720 (750)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC--------ccEEEeeCCeeecHH---HHHHHHHHHHhc
Confidence 4545555555555555555555555 348999999998753 889999999874
No 185
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=41.42 E-value=49 Score=25.85 Aligned_cols=37 Identities=8% Similarity=0.207 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHcCCCccccceeEEcccC
Q 023529 68 VGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (281)
Q Consensus 68 ~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~Igig~~G 104 (281)
...+++.+...+++++++++.++++++|.+|-+.+.-
T Consensus 13 nt~e~I~~at~eLl~~ii~~N~l~~edivSv~FT~T~ 49 (117)
T TIGR01796 13 NEAEEIGEAVAELLTELMERNELTPEDLISVIFTVTE 49 (117)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEecC
Confidence 4679999999999999999999999999999887753
No 186
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=41.42 E-value=26 Score=35.81 Aligned_cols=17 Identities=29% Similarity=0.184 Sum_probs=16.3
Q ss_pred EEEEecCccceeeeeee
Q 023529 24 ILGLDGGTTSTVCICMP 40 (281)
Q Consensus 24 viGVD~GgT~~~~~l~d 40 (281)
+|++|+|||++.++++.
T Consensus 280 ~i~~DmGGTStDva~i~ 296 (674)
T COG0145 280 AIVFDMGGTSTDVALII 296 (674)
T ss_pred EEEEEcCCcceeeeeee
Confidence 99999999999999987
No 187
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=40.71 E-value=1.1e+02 Score=30.82 Aligned_cols=49 Identities=29% Similarity=0.302 Sum_probs=31.1
Q ss_pred CccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeCCCCChhHHHHHHHHhh
Q 023529 223 SFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGAALLAWNS 276 (281)
Q Consensus 223 p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~~~~~~~~GAa~la~~~ 276 (281)
...|+|.||....+. +.+.+++.+... + ..-..|..+.+.||++.|...
T Consensus 313 id~ViLvGGssriP~---V~~~l~~~f~~~-~-~~~~npdeaVA~GAai~a~~l 361 (599)
T TIGR01991 313 IKGVVLVGGSTRMPL---VRRAVAELFGQE-P-LTDIDPDQVVALGAAIQADLL 361 (599)
T ss_pred CCEEEEECCcCCChH---HHHHHHHHhCCC-C-CCCCCCcHHHHHHHHHHHHHh
Confidence 568999999987632 555555544321 1 112245667889999998643
No 188
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=40.56 E-value=52 Score=25.73 Aligned_cols=37 Identities=8% Similarity=0.183 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHcCCCccccceeEEcccC
Q 023529 68 VGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (281)
Q Consensus 68 ~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~Igig~~G 104 (281)
...+++.+...+++++++++.++++++|.+|-+.+.-
T Consensus 13 nt~e~I~~at~eLl~~i~~~N~l~~edivSv~FT~T~ 49 (117)
T cd02185 13 NTAEEILEATRELLEEIIERNNIKPEDIISVIFTVTP 49 (117)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEeCC
Confidence 4679999999999999999999999999999887753
No 189
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=39.49 E-value=43 Score=30.62 Aligned_cols=20 Identities=25% Similarity=0.242 Sum_probs=15.5
Q ss_pred CcEEEEEecCccceeeeeee
Q 023529 21 REVILGLDGGTTSTVCICMP 40 (281)
Q Consensus 21 ~~~viGVD~GgT~~~~~l~d 40 (281)
...++.||+||+++.++++.
T Consensus 163 ~~~~lVVDIGG~T~Dv~~v~ 182 (318)
T PF06406_consen 163 DESVLVVDIGGRTTDVAVVR 182 (318)
T ss_dssp TSEEEEEEE-SS-EEEEEEE
T ss_pred cCcEEEEEcCCCeEEeeeec
Confidence 35789999999999998887
No 190
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=38.95 E-value=26 Score=35.02 Aligned_cols=48 Identities=23% Similarity=0.221 Sum_probs=30.3
Q ss_pred CCccEEEEcCcccCcchhhhHHHHHHHHHhhCC--CceeeCCCCChhHHHHHHHHhh
Q 023529 222 HSFPLVMVGGVLEANRRWDIGREVVKCILRDYP--GAVPIRPKVEPAVGAALLAWNS 276 (281)
Q Consensus 222 ~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p--~~~i~~~~~~~~~GAa~la~~~ 276 (281)
+-..|++.||-..-+ .+++.+.+.++ ..+-+.|..+.++||+..|...
T Consensus 309 ~I~~VilvGGstriP-------~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l 358 (579)
T COG0443 309 DIDLVILVGGSTRIP-------AVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVL 358 (579)
T ss_pred hCceEEEccceeccH-------HHHHHHHHHhCccccccCCccHHHHHHHHHHHHhh
Confidence 366889999988652 44444444443 2222346677889999988643
No 191
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=38.71 E-value=1e+02 Score=31.00 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=17.3
Q ss_pred CcEEEEEecCccceeeeeee
Q 023529 21 REVILGLDGGTTSTVCICMP 40 (281)
Q Consensus 21 ~~~viGVD~GgT~~~~~l~d 40 (281)
..+++|||+|.|++.+++++
T Consensus 18 ~~~~iGIDlGTt~s~va~~~ 37 (616)
T PRK05183 18 RRLAVGIDLGTTNSLVATVR 37 (616)
T ss_pred CCeEEEEEeccccEEEEEEE
Confidence 34799999999999998875
No 192
>PRK13411 molecular chaperone DnaK; Provisional
Probab=37.30 E-value=51 Score=33.46 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=16.9
Q ss_pred cEEEEEecCccceeeeeee
Q 023529 22 EVILGLDGGTTSTVCICMP 40 (281)
Q Consensus 22 ~~viGVD~GgT~~~~~l~d 40 (281)
.+++|||+|.|++.+++++
T Consensus 2 ~~viGIDlGTt~s~va~~~ 20 (653)
T PRK13411 2 GKVIGIDLGTTNSCVAVLE 20 (653)
T ss_pred CcEEEEEeCcccEEEEEEE
Confidence 4799999999999998876
No 193
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=36.75 E-value=33 Score=34.46 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=16.5
Q ss_pred cEEEEEecCccceeeeeee
Q 023529 22 EVILGLDGGTTSTVCICMP 40 (281)
Q Consensus 22 ~~viGVD~GgT~~~~~l~d 40 (281)
..++|||+|.|+..++++.
T Consensus 19 ~~viGIDlGTT~S~va~~~ 37 (595)
T PRK01433 19 QIAVGIDFGTTNSLIAIAT 37 (595)
T ss_pred ceEEEEEcCcccEEEEEEe
Confidence 5799999999999888774
No 194
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=36.25 E-value=1.3e+02 Score=30.41 Aligned_cols=19 Identities=37% Similarity=0.545 Sum_probs=17.0
Q ss_pred cEEEEEecCccceeeeeee
Q 023529 22 EVILGLDGGTTSTVCICMP 40 (281)
Q Consensus 22 ~~viGVD~GgT~~~~~l~d 40 (281)
..++|||+|.|++.+++++
T Consensus 2 ~~viGIDlGTt~s~va~~~ 20 (627)
T PRK00290 2 GKIIGIDLGTTNSCVAVME 20 (627)
T ss_pred CcEEEEEeCcccEEEEEEE
Confidence 4689999999999999886
No 195
>CHL00094 dnaK heat shock protein 70
Probab=35.98 E-value=96 Score=31.25 Aligned_cols=19 Identities=37% Similarity=0.571 Sum_probs=17.1
Q ss_pred cEEEEEecCccceeeeeee
Q 023529 22 EVILGLDGGTTSTVCICMP 40 (281)
Q Consensus 22 ~~viGVD~GgT~~~~~l~d 40 (281)
.+++|||+|.|++.+++++
T Consensus 2 ~~viGIDlGTt~s~va~~~ 20 (621)
T CHL00094 2 GKVVGIDLGTTNSVVAVME 20 (621)
T ss_pred CceEEEEeCcccEEEEEEE
Confidence 4799999999999999886
No 196
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=35.80 E-value=78 Score=29.07 Aligned_cols=43 Identities=19% Similarity=0.152 Sum_probs=24.7
Q ss_pred cEEEEcCcccCcchhhhHHHHHHHHHhhCCCceee-CCCCChhHHHHHHH
Q 023529 225 PLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPI-RPKVEPAVGAALLA 273 (281)
Q Consensus 225 ~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~-~~~~~~~~GAa~la 273 (281)
.|+|.||-..-.. +.+.+++.+.. .+.+. .|....+.||+...
T Consensus 281 gIvLtGG~s~lpg---l~e~l~~~~~~---~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 281 GVILTGGGALLNG---IKEWLSEEIVV---PVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred CEEEEchhhhhhh---HHHHHHHHHCC---CceeCCCHHHHHHHHHHHHH
Confidence 4999998764422 44444444432 23332 35556788998874
No 197
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=35.29 E-value=1.1e+02 Score=29.83 Aligned_cols=67 Identities=21% Similarity=0.197 Sum_probs=42.7
Q ss_pred EEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecC---------CCC--------CccCCHHHHHHHHHHHHHHHH
Q 023529 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG---------CSN--------HNSVGEDAARETIEKVMADAL 85 (281)
Q Consensus 23 ~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~---------~~~--------~~~~~~~~~~~~i~~~i~~~l 85 (281)
.++|+|++.-.++++++|. +++++....+. +.+ ..-..|--++=...+++-+-+
T Consensus 10 ~fLG~DlSTQqlKaviids---------~LnVv~~~~V~Fd~DLpef~T~~GV~~~g~~~~i~~PV~MWveAlDlll~kl 80 (545)
T KOG2531|consen 10 SFLGFDLSTQQLKAVIIDS---------NLNVVHTEAVHFDTDLPEFGTKNGVYRNGGGETITSPVLMWVEALDLLLDKL 80 (545)
T ss_pred eeeeeecccceeEEEEEcC---------CccEEEEEEEeeccccccccccCceEeCCCCcEEeccHHHHHHHHHHHHHHH
Confidence 5999999999999999994 89998776553 110 000112223333334444555
Q ss_pred HHcCCCcccccee
Q 023529 86 LKSGSNRSAVRAV 98 (281)
Q Consensus 86 ~~~g~~~~~i~~I 98 (281)
.++|.+.++|.+|
T Consensus 81 ~~~~~d~~kV~ai 93 (545)
T KOG2531|consen 81 REAGFDLSKVMAI 93 (545)
T ss_pred HHcCCCHHHhhhh
Confidence 6778887777764
No 198
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=35.20 E-value=60 Score=29.58 Aligned_cols=66 Identities=17% Similarity=0.233 Sum_probs=39.9
Q ss_pred EEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCccccceeEEcccC
Q 023529 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (281)
Q Consensus 25 iGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~Igig~~G 104 (281)
+|||-|.-.+.+.-+|- +.|+++.+...+.... +.+|.-. .+.++++-.+. ..+.+| +|.+|
T Consensus 1 ~GIDpGT~smdvfgfdD--------Esg~vi~~~~I~rdeV-tk~p~ii----v~ii~e~~~e~----g~~dai-vgpSG 62 (374)
T COG2441 1 IGIDPGTGSMDVFGFDD--------ESGNVIVDVAIPRDEV-TKSPRII----VDIIEEVQAEV----GGIDAI-VGPSG 62 (374)
T ss_pred CCcCCCCCceeEEEEec--------CCCCEEEEEecCHHHh-ccCchHH----HHHHHHHhhhh----ccccce-ecccc
Confidence 48899887887777772 5799999988774332 2344433 34444443333 234454 56777
Q ss_pred CCCh
Q 023529 105 VNHP 108 (281)
Q Consensus 105 ~~~~ 108 (281)
+.-|
T Consensus 63 yGlP 66 (374)
T COG2441 63 YGLP 66 (374)
T ss_pred CCCc
Confidence 7544
No 199
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=34.70 E-value=1.2e+02 Score=27.42 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=16.5
Q ss_pred EEEEecCccceeeeeeec
Q 023529 24 ILGLDGGTTSTVCICMPV 41 (281)
Q Consensus 24 viGVD~GgT~~~~~l~d~ 41 (281)
+.+||+|..++|+.+++.
T Consensus 2 ~AvIDiGSNsirl~I~~~ 19 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARG 19 (300)
T ss_pred eEEEEecCCeeeEEEEEe
Confidence 578999999999999996
No 200
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=34.33 E-value=59 Score=29.65 Aligned_cols=20 Identities=20% Similarity=0.127 Sum_probs=17.5
Q ss_pred CcEEEEEecCccceeeeeee
Q 023529 21 REVILGLDGGTTSTVCICMP 40 (281)
Q Consensus 21 ~~~viGVD~GgT~~~~~l~d 40 (281)
...++.||+|+.++.+++++
T Consensus 166 ~~~~lVIDIG~~TtD~~~~~ 185 (320)
T TIGR03739 166 KEQSLIIDPGYFTFDWLVAR 185 (320)
T ss_pred cCcEEEEecCCCeeeeehcc
Confidence 45689999999999998887
No 201
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=34.15 E-value=95 Score=30.99 Aligned_cols=18 Identities=39% Similarity=0.589 Sum_probs=15.8
Q ss_pred EEEEEecCccceeeeeee
Q 023529 23 VILGLDGGTTSTVCICMP 40 (281)
Q Consensus 23 ~viGVD~GgT~~~~~l~d 40 (281)
.++|||+|.|++.+++++
T Consensus 1 ~viGIDlGtt~s~va~~~ 18 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVME 18 (595)
T ss_pred CEEEEEeCcccEEEEEEE
Confidence 379999999999998886
No 202
>PRK10854 exopolyphosphatase; Provisional
Probab=32.89 E-value=1.9e+02 Score=28.43 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=18.9
Q ss_pred CcEEEEEecCccceeeeeeec
Q 023529 21 REVILGLDGGTTSTVCICMPV 41 (281)
Q Consensus 21 ~~~viGVD~GgT~~~~~l~d~ 41 (281)
+..+..||+|..+++..+++.
T Consensus 10 ~~~~A~IDIGSNSirL~I~e~ 30 (513)
T PRK10854 10 PQEFAAVDLGSNSFHMVIARV 30 (513)
T ss_pred CCEEEEEEeccchheEEEEEe
Confidence 357999999999999999986
No 203
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=32.80 E-value=1.5e+02 Score=28.95 Aligned_cols=75 Identities=12% Similarity=0.075 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeCCCCChhH
Q 023529 188 DEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAV 267 (281)
Q Consensus 188 D~~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~~~~~~~~ 267 (281)
+..|+.+++-..-.--..+..+-... ..|.+|++.||...+.. ++..|.+.+.. |...+ ....++++
T Consensus 415 ~~e~rAlvEgQ~L~~r~~~~~lg~~~-------~~~~rilvtGGAS~N~~---Ilq~iadVf~a--pVy~~-~~~~sa~l 481 (545)
T KOG2531|consen 415 EIEARALVEGQFLSKRARAEPLGFKS-------NPPTRILVTGGASRNEA---ILQIIADVFGA--PVYTI-EGPNSAAL 481 (545)
T ss_pred hHHHHHHHHHhHhHhhhhhccccCCC-------CCCceEEEecCccccHH---HHHHHHHHhCC--CeEee-cCCchhhH
Confidence 45677777644332222222222222 24899999999987743 44555444432 44444 45567888
Q ss_pred HHHHHHHh
Q 023529 268 GAALLAWN 275 (281)
Q Consensus 268 GAa~la~~ 275 (281)
|+|+.|.-
T Consensus 482 G~A~ra~y 489 (545)
T KOG2531|consen 482 GGAYRAAY 489 (545)
T ss_pred HHHHHHHH
Confidence 99888643
No 204
>PTZ00281 actin; Provisional
Probab=31.46 E-value=45 Score=31.27 Aligned_cols=46 Identities=26% Similarity=0.306 Sum_probs=34.3
Q ss_pred cEEEEcCcccCcchhhhHHHHHHHHHhhCCC---ceeeCC---CCChhHHHHHHH
Q 023529 225 PLVMVGGVLEANRRWDIGREVVKCILRDYPG---AVPIRP---KVEPAVGAALLA 273 (281)
Q Consensus 225 ~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~---~~i~~~---~~~~~~GAa~la 273 (281)
.|||.||...... |.++++..|.+..|. +++..+ ...+-+||..+|
T Consensus 297 nIvl~GG~s~~~G---f~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsila 348 (376)
T PTZ00281 297 NVVLSGGTTMFPG---IADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILA 348 (376)
T ss_pred hccccCccccCcC---HHHHHHHHHHHhCCCCcceEEecCCCCceeEEECccccc
Confidence 6999999998866 899999999988763 444432 345667877776
No 205
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=31.41 E-value=1.8e+02 Score=28.82 Aligned_cols=68 Identities=21% Similarity=0.307 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeCCC--CChhHHHHHHHH
Q 023529 197 DSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPK--VEPAVGAALLAW 274 (281)
Q Consensus 197 ~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~~~--~~~~~GAa~la~ 274 (281)
.+.+.++-.+..++..++.++. .+=..+.++||+.++.- |...+...+. ..+++|+ +..+.||++++.
T Consensus 391 A~leai~fqtr~Il~am~~~~~--~~i~~L~~~GG~s~N~l---l~Q~~ADi~g-----~pv~~p~~~e~~~~GaA~l~~ 460 (516)
T KOG2517|consen 391 AALEAIAFQTREILEAMERDGG--HPISTLRVCGGLSKNPL---LMQLQADILG-----LPVVRPQDVEAVALGAAMLAG 460 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--CCcceeeeccccccCHH---HHHHHHHHhC-----CccccccchhHHHHHHHHHHH
Confidence 4555666666666666664432 12345899999998742 5554444333 3444453 337899999885
No 206
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=30.59 E-value=26 Score=34.02 Aligned_cols=31 Identities=16% Similarity=0.155 Sum_probs=25.8
Q ss_pred CcEEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecC
Q 023529 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG 61 (281)
Q Consensus 21 ~~~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~ 61 (281)
..-++-||+||-.+.++++. +|++++....+
T Consensus 145 e~gVa~IDIGgGTT~iaVf~----------~G~l~~T~~l~ 175 (475)
T PRK10719 145 NTRVLNIDIGGGTANYALFD----------AGKVIDTACLN 175 (475)
T ss_pred cCceEEEEeCCCceEEEEEE----------CCEEEEEEEEe
Confidence 34789999999999999998 78887776654
No 207
>PRK13410 molecular chaperone DnaK; Provisional
Probab=30.48 E-value=1.2e+02 Score=30.90 Aligned_cols=19 Identities=42% Similarity=0.581 Sum_probs=17.0
Q ss_pred cEEEEEecCccceeeeeee
Q 023529 22 EVILGLDGGTTSTVCICMP 40 (281)
Q Consensus 22 ~~viGVD~GgT~~~~~l~d 40 (281)
.+++|||+|.|++.+++++
T Consensus 2 ~~viGIDlGTt~s~va~~~ 20 (668)
T PRK13410 2 GRIVGIDLGTTNSVVAVME 20 (668)
T ss_pred CcEEEEEeCCCcEEEEEEE
Confidence 5799999999999998876
No 208
>PRK00976 hypothetical protein; Provisional
Probab=30.16 E-value=1.5e+02 Score=27.57 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=16.9
Q ss_pred EEEEEecCccceeeeeee
Q 023529 23 VILGLDGGTTSTVCICMP 40 (281)
Q Consensus 23 ~viGVD~GgT~~~~~l~d 40 (281)
+++|||=|.|-+++++.+
T Consensus 2 ~~~g~dhgt~~~~~~~~~ 19 (326)
T PRK00976 2 MFVGIDHGTTGIRFAIIE 19 (326)
T ss_pred eEEeecCCCccEEEEEEc
Confidence 689999999999999996
No 209
>PLN02920 pantothenate kinase 1
Probab=30.05 E-value=3.1e+02 Score=26.15 Aligned_cols=75 Identities=12% Similarity=0.017 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhC-CCceeeCC---CC
Q 023529 188 DEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDY-PGAVPIRP---KV 263 (281)
Q Consensus 188 D~~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~-p~~~i~~~---~~ 263 (281)
+..|+.++.-.+.-++.......+..+ -..|+++|+....++. .++.+...+.--. ..++...+ .+
T Consensus 271 eDia~SLL~mVs~nIgqiA~L~A~~~~--------ik~Ivf~G~fir~~~~--tm~~ls~a~~fwS~g~~ka~FLrHeGY 340 (398)
T PLN02920 271 EDVARSLLRMISNNIGQISYLNALRFG--------LKRIFFGGFFIRGHSY--TMDTISVAVHFWSKGEAKAMFLRHEGF 340 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC--------CCEEEEEeecccCcHH--HHHHHHHHHHHhccCceeEEEecCcch
Confidence 447889999999999999888888888 5689999998877652 6665544332111 23343333 45
Q ss_pred ChhHHHHHH
Q 023529 264 EPAVGAALL 272 (281)
Q Consensus 264 ~~~~GAa~l 272 (281)
.+++||++.
T Consensus 341 lGAlGAfl~ 349 (398)
T PLN02920 341 LGALGAFMS 349 (398)
T ss_pred hHHHHHHHh
Confidence 577888754
No 210
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=29.98 E-value=99 Score=31.98 Aligned_cols=79 Identities=13% Similarity=0.194 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeCCCCChhHHH
Q 023529 190 VANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGA 269 (281)
Q Consensus 190 ~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~~~~~~~~GA 269 (281)
.|..++.++..=|-.++...--.+| +=..|||.||-..-+. +.+.+++.+.+.-- -+....+.+.+.||
T Consensus 339 lc~Dl~~r~~~Pi~dAl~~a~l~ld-------eIn~ViL~Gg~TRVP~---VQe~l~k~v~~~ei-~knlNaDEA~vmGa 407 (902)
T KOG0104|consen 339 LCADLEERIVEPINDALKKAQLSLD-------EINQVILFGGATRVPK---VQETLIKAVGKEEL-GKNLNADEAAVMGA 407 (902)
T ss_pred HHHHHHHhhhhhHHHHHHhcCCChh-------hhheeEEecCcccCch---HHHHHHHHHhHHHH-hcccChhHHHHHHH
Confidence 4455555555555555544433333 2457889898887753 77777777755310 01223456789999
Q ss_pred HHHHHhhhhc
Q 023529 270 ALLAWNSFMN 279 (281)
Q Consensus 270 a~la~~~~~~ 279 (281)
++.|...-.+
T Consensus 408 v~~aA~LSks 417 (902)
T KOG0104|consen 408 VYQAAHLSKS 417 (902)
T ss_pred HHHHHhhccc
Confidence 9999865543
No 211
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=29.21 E-value=84 Score=31.90 Aligned_cols=49 Identities=22% Similarity=0.236 Sum_probs=29.3
Q ss_pred CccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeCCCCChhHHHHHHHHh
Q 023529 223 SFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGAALLAWN 275 (281)
Q Consensus 223 p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~~~~~~~~GAa~la~~ 275 (281)
...|+|.||-...+. +.+.+++.+... +......|..+.+.||++.|..
T Consensus 333 i~~ViLvGGssriP~---v~~~i~~~f~~~-~~~~~~npdeaVA~GAa~~aa~ 381 (653)
T PTZ00009 333 VHEVVLVGGSTRIPK---VQSLIKDFFNGK-EPCKSINPDEAVAYGAAVQAAI 381 (653)
T ss_pred CcEEEEECCCCCChh---HHHHHHHHhCCC-CCCCCCCcchHHhhhhhhhHHH
Confidence 568999999876632 455554443211 1112224666788999998864
No 212
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=28.79 E-value=2.6e+02 Score=27.38 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=19.1
Q ss_pred CcEEEEEecCccceeeeeeec
Q 023529 21 REVILGLDGGTTSTVCICMPV 41 (281)
Q Consensus 21 ~~~viGVD~GgT~~~~~l~d~ 41 (281)
..++..||+|..++|..+++.
T Consensus 5 ~~~~A~IDIGSNSirL~I~~~ 25 (496)
T PRK11031 5 SSLYAAIDLGSNSFHMLVVRE 25 (496)
T ss_pred CCEEEEEEccccceeEEEEEe
Confidence 468999999999999999985
No 213
>COG2183 Tex Transcriptional accessory protein [Transcription]
Probab=28.05 E-value=1.5e+02 Score=30.67 Aligned_cols=70 Identities=20% Similarity=0.143 Sum_probs=45.0
Q ss_pred CcEEEEEecCccc-eeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHHHHHHHHHHHHHHHHHHcCCCccccceeE
Q 023529 21 REVILGLDGGTTS-TVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVC 99 (281)
Q Consensus 21 ~~~viGVD~GgT~-~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~i~~Ig 99 (281)
...++|+|-|.-. ++++++| ..|+.+.....-+..+. ...+...+.+ .+++...++ +..+||
T Consensus 329 ~~~~lglDPg~rtG~k~Avvd---------~tGk~l~~~~Iyp~~p~-~~~~~~~~~l----~~l~~~~~V---e~iaIG 391 (780)
T COG2183 329 PKATLGLDPGFRTGCKVAVVD---------DTGKLLDTATIYPHPPV-NQSDKAEATL----KDLIRKYKV---ELIAIG 391 (780)
T ss_pred CcceeecCCccccccEEEEEc---------CCCceeceeEEEcCCCc-cchHHHHHHH----HHHHHHhCc---eEEEEe
Confidence 3489999999655 8999999 48999987776555443 2234444444 444455444 356777
Q ss_pred EcccCCCC
Q 023529 100 LAVSGVNH 107 (281)
Q Consensus 100 ig~~G~~~ 107 (281)
.|.+....
T Consensus 392 ngTaSret 399 (780)
T COG2183 392 NGTASRET 399 (780)
T ss_pred cCCcchhH
Confidence 77776543
No 214
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=27.95 E-value=69 Score=29.64 Aligned_cols=61 Identities=21% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcccCCCCCCCCcc-------EEEEcCcccCcchhhhHHHHHHHHHhhCC---CceeeC---CCCChhHH
Q 023529 202 LALSVKAVVQRLSLSGEDGKHSFP-------LVMVGGVLEANRRWDIGREVVKCILRDYP---GAVPIR---PKVEPAVG 268 (281)
Q Consensus 202 l~~~i~~lv~~l~~~~~~~~~p~~-------IvLgGgv~~~~~~~~l~~~i~~~l~~~~p---~~~i~~---~~~~~~~G 268 (281)
|.++|...++..+ |+. |+|.||.+.-.. |.+.+++.|.+..| .+++.. +..++-.|
T Consensus 272 i~~~i~~~i~~~~--------~d~r~~l~~nIvltGG~s~i~G---l~~RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G 340 (373)
T smart00268 272 IHELVYESIQKCD--------IDVRKDLYENIVLSGGSTLIPG---FGERLEKELKQLAPKKLKVKVIAPPERKYSVWLG 340 (373)
T ss_pred HHHHHHHHHHhCC--------HhHHHHHHhCeEeecccccCcC---HHHHHHHHHHHhCCCCceeEEecCCCCccceEeC
Q ss_pred HHHHH
Q 023529 269 AALLA 273 (281)
Q Consensus 269 Aa~la 273 (281)
|..+|
T Consensus 341 ~sila 345 (373)
T smart00268 341 GSILA 345 (373)
T ss_pred ccccc
No 215
>PLN03184 chloroplast Hsp70; Provisional
Probab=27.58 E-value=2.2e+02 Score=29.15 Aligned_cols=48 Identities=29% Similarity=0.331 Sum_probs=29.8
Q ss_pred CccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeCCCCChhHHHHHHHHh
Q 023529 223 SFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGAALLAWN 275 (281)
Q Consensus 223 p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~~~~~~~~GAa~la~~ 275 (281)
-..|+|.||-..-+. +.+.+++.+.+. + ..-..|..+.+.||++.|..
T Consensus 366 Id~ViLvGGssriP~---V~~~i~~~fg~~-~-~~~~npdeaVA~GAAi~aa~ 413 (673)
T PLN03184 366 IDEVILVGGSTRIPA---VQELVKKLTGKD-P-NVTVNPDEVVALGAAVQAGV 413 (673)
T ss_pred ccEEEEECCccccHH---HHHHHHHHhCCC-c-ccccCcchHHHHHHHHHHHH
Confidence 368999999886632 555555544221 1 12224666788999998864
No 216
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=27.12 E-value=3.4e+02 Score=21.98 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=18.9
Q ss_pred cEEEEEecCcc----ceeeeeeecccCCCCCCCCCCeEEEEec
Q 023529 22 EVILGLDGGTT----STVCICMPVISMSDSLPDPLPVLARAAA 60 (281)
Q Consensus 22 ~~viGVD~GgT----~~~~~l~d~~~~~~~~~~~g~il~~~~~ 60 (281)
-.|+++.-|.. -+.++++| ++|+++...+.
T Consensus 5 ~rVla~~~g~g~~~~~~~~v~ld---------~~G~v~d~~~~ 38 (150)
T PF14639_consen 5 PRVLALSWGSGDGDDAVFCVVLD---------ENGEVLDHLKL 38 (150)
T ss_dssp --EEEEE-TT--TTS-EEEEEE----------TTS-EEEEEEE
T ss_pred CEEEEEEcCCCCCCCCEEEEEEC---------CCCcEEEEEEE
Confidence 35788887744 47888989 49999988877
No 217
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=26.08 E-value=85 Score=27.98 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHcCCCccccceeEEcccCCCC
Q 023529 73 ARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNH 107 (281)
Q Consensus 73 ~~~~i~~~i~~~l~~~g~~~~~i~~Igig~~G~~~ 107 (281)
=.++|..++++++++++++..++.+|+++. ||..
T Consensus 29 H~~~L~~~i~~~l~~~~~~~~did~iavt~-GPGs 62 (268)
T PF00814_consen 29 HSENLPPLIEELLKEAGISLSDIDAIAVTR-GPGS 62 (268)
T ss_dssp HHHHHHHHHHHHHHHHTS-GGGESEEEEEE-ESS-
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEec-CCCc
Confidence 357899999999999999999999987765 4433
No 218
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=26.03 E-value=1.9e+02 Score=26.68 Aligned_cols=43 Identities=19% Similarity=0.105 Sum_probs=27.0
Q ss_pred cEEEEcCcccCcchhhhHHHHHHHHHhhCCCceee-CCCCChhHHHHHHH
Q 023529 225 PLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPI-RPKVEPAVGAALLA 273 (281)
Q Consensus 225 ~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~-~~~~~~~~GAa~la 273 (281)
-|+|.||-+.-.. +.+.+++.+.- ++.+. .|....+.||..+.
T Consensus 276 GI~LtGGga~l~G---l~~~i~~~~~~---pV~va~~P~~~va~G~~~~l 319 (326)
T PF06723_consen 276 GIVLTGGGALLRG---LDEYISEETGV---PVRVADDPLTAVARGAGKLL 319 (326)
T ss_dssp -EEEESGGGGSBT---HHHHHHHHHSS----EEE-SSTTTHHHHHHHHTT
T ss_pred CEEEEChhhhhcc---HHHHHHHHHCC---CEEEcCCHHHHHHHHHHHHH
Confidence 4999998887654 56666666641 23332 36667888888764
No 219
>PTZ00280 Actin-related protein 3; Provisional
Probab=25.98 E-value=1.1e+02 Score=29.02 Aligned_cols=26 Identities=12% Similarity=0.254 Sum_probs=22.1
Q ss_pred cEEEEcCcccCcchhhhHHHHHHHHHhhC
Q 023529 225 PLVMVGGVLEANRRWDIGREVVKCILRDY 253 (281)
Q Consensus 225 ~IvLgGgv~~~~~~~~l~~~i~~~l~~~~ 253 (281)
.|+|.||...-.. |.+.+++.|.+..
T Consensus 315 nIvL~GG~s~~~G---f~eRL~~El~~~~ 340 (414)
T PTZ00280 315 NIVLSGGSTMFKG---FDKRLQRDVRKRV 340 (414)
T ss_pred cEEEeCCcccCcC---HHHHHHHHHHHhc
Confidence 4999999998765 8999999998864
No 220
>PRK13322 pantothenate kinase; Reviewed
Probab=25.54 E-value=1.5e+02 Score=26.08 Aligned_cols=17 Identities=29% Similarity=0.348 Sum_probs=16.3
Q ss_pred EEEEecCccceeeeeee
Q 023529 24 ILGLDGGTTSTVCICMP 40 (281)
Q Consensus 24 viGVD~GgT~~~~~l~d 40 (281)
++-||+|=|+++.++++
T Consensus 2 ~L~IDiGNT~iK~~l~~ 18 (246)
T PRK13322 2 ILELDCGNSRLKWRVID 18 (246)
T ss_pred EEEEEeCCCcEEEEEEc
Confidence 78999999999999998
No 221
>PTZ00466 actin-like protein; Provisional
Probab=25.13 E-value=57 Score=30.70 Aligned_cols=47 Identities=23% Similarity=0.334 Sum_probs=34.4
Q ss_pred ccEEEEcCcccCcchhhhHHHHHHHHHhhCCC---ceeeCC---CCChhHHHHHHH
Q 023529 224 FPLVMVGGVLEANRRWDIGREVVKCILRDYPG---AVPIRP---KVEPAVGAALLA 273 (281)
Q Consensus 224 ~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~---~~i~~~---~~~~~~GAa~la 273 (281)
..|+|.||...-.. |.++++..|.+..|. +++..+ ..++=+||..+|
T Consensus 300 ~nIvL~GG~Sl~~G---f~~RL~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSila 352 (380)
T PTZ00466 300 SHIVLSGGTTMFHG---FGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILA 352 (380)
T ss_pred hcEEEeCCccccCC---HHHHHHHHHHHhCCCCceEEEecCCCCceeEEECchhhc
Confidence 36999999988765 899999999998763 344432 344667888776
No 222
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=25.10 E-value=2.8e+02 Score=22.46 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=17.7
Q ss_pred EEEEEecCccceeeeeeec
Q 023529 23 VILGLDGGTTSTVCICMPV 41 (281)
Q Consensus 23 ~viGVD~GgT~~~~~l~d~ 41 (281)
.+++||+|--+...++++.
T Consensus 2 ii~sIDiGikNlA~~iie~ 20 (143)
T PF04848_consen 2 IILSIDIGIKNLAYCIIEF 20 (143)
T ss_pred eEEEEecCCCceeEEEEEc
Confidence 5899999999999999996
No 223
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=25.01 E-value=1.8e+02 Score=25.73 Aligned_cols=45 Identities=22% Similarity=0.169 Sum_probs=29.7
Q ss_pred CccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeCCCCChhHHHHHH
Q 023529 223 SFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGAALL 272 (281)
Q Consensus 223 p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~~~~~~~~GAa~l 272 (281)
|..|+|.||...-.. +.+.+++.+.. |-.....|.+..++||+..
T Consensus 222 ~~~IvLtGG~s~lpg---l~e~l~~~lg~--~v~~~~~P~~~~a~Gaa~~ 266 (267)
T PRK15080 222 VEDIYLVGGTCCLPG---FEEVFEKQTGL--PVHKPQHPLFVTPLGIALS 266 (267)
T ss_pred CCEEEEECCcccchh---HHHHHHHHhCC--CcccCCCchHHHHHHHHhh
Confidence 789999999987643 56666666532 2111123567788999864
No 224
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=25.00 E-value=1.6e+02 Score=29.96 Aligned_cols=48 Identities=23% Similarity=0.303 Sum_probs=30.0
Q ss_pred CccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeCCCCChhHHHHHHHHh
Q 023529 223 SFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGAALLAWN 275 (281)
Q Consensus 223 p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~~~~~~~~GAa~la~~ 275 (281)
-..|+|.||-...+. +.+.+++.+.. +...-..|..+.+.||++.|..
T Consensus 368 i~~ViLvGGssriP~---v~~~l~~~f~~--~~~~~~npdeaVA~GAAi~aa~ 415 (663)
T PTZ00400 368 LNDVILVGGMTRMPK---VSETVKKIFGK--EPSKGVNPDEAVAMGAAIQAGV 415 (663)
T ss_pred CcEEEEECCccCChH---HHHHHHHHhCC--CcccCCCCccceeeccHHHHHh
Confidence 468999999886632 55555554432 1112224667788999998853
No 225
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=24.86 E-value=2.4e+02 Score=25.13 Aligned_cols=47 Identities=13% Similarity=0.102 Sum_probs=34.5
Q ss_pred cEEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHHHHHHHHHHHH
Q 023529 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVM 81 (281)
Q Consensus 22 ~~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i 81 (281)
.-++.||+|-.||.++++. +++|.+-.+--+.. .+++.+.+.|.+..
T Consensus 167 ~~~~~vniGN~HTlaa~v~----------~~rI~GvfEHHT~~---l~~~kL~~~l~~l~ 213 (254)
T PF08735_consen 167 EGIIVVNIGNGHTLAALVK----------DGRIYGVFEHHTGM---LTPEKLEEYLERLR 213 (254)
T ss_pred CCeEEEEeCCccEEEEEEe----------CCEEEEEEecccCC---CCHHHHHHHHHHHH
Confidence 4689999999999999997 88998877655443 46676655554433
No 226
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=24.55 E-value=1.5e+02 Score=24.10 Aligned_cols=36 Identities=11% Similarity=0.149 Sum_probs=21.5
Q ss_pred HHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhh
Q 023529 206 VKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRD 252 (281)
Q Consensus 206 i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~ 252 (281)
+.+++.... |..|+++|-=..+.. +.+.+++.+.+.
T Consensus 55 l~~~i~~~k--------P~vI~v~g~~~~s~~---l~~~v~~~v~~~ 90 (150)
T PF14639_consen 55 LKKFIEKHK--------PDVIAVGGNSRESRK---LYDDVRDIVEEL 90 (150)
T ss_dssp HHHHHHHH----------SEEEE--SSTHHHH---HHHHHHHHHHHT
T ss_pred HHHHHHHcC--------CeEEEEcCCChhHHH---HHHHHHHHHHHh
Confidence 445566666 999999774444433 788888888765
No 227
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=24.21 E-value=59 Score=29.70 Aligned_cols=15 Identities=33% Similarity=0.563 Sum_probs=13.2
Q ss_pred EEEecCccceeeeee
Q 023529 25 LGLDGGTTSTVCICM 39 (281)
Q Consensus 25 iGVD~GgT~~~~~l~ 39 (281)
+|||+|.|++++...
T Consensus 5 ~giDlGt~~s~i~~~ 19 (333)
T TIGR00904 5 IGIDLGTANTLVYVK 19 (333)
T ss_pred eEEecCcceEEEEEC
Confidence 899999999997664
No 228
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=23.73 E-value=2.6e+02 Score=26.37 Aligned_cols=29 Identities=14% Similarity=0.267 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHcCCCccccceeEEcccCC
Q 023529 75 ETIEKVMADALLKSGSNRSAVRAVCLAVSGV 105 (281)
Q Consensus 75 ~~i~~~i~~~l~~~g~~~~~i~~Igig~~G~ 105 (281)
+...+++++++++++++.++|.. ||.+|.
T Consensus 71 ~~~a~av~~~~~~~~l~~~~id~--IgsHGQ 99 (365)
T PRK09585 71 RLFAEAVNALLAEAGLSPEDIDA--IGSHGQ 99 (365)
T ss_pred HHHHHHHHHHHHHcCCCccCccE--EEeCCc
Confidence 34567788889999998888888 588886
No 229
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=23.63 E-value=3.3e+02 Score=25.89 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=30.7
Q ss_pred CCccEEEEcCcccCcchhhhHHHHHHHHHhhC----CCce------eeCCCCChhHHHHHHHHh
Q 023529 222 HSFPLVMVGGVLEANRRWDIGREVVKCILRDY----PGAV------PIRPKVEPAVGAALLAWN 275 (281)
Q Consensus 222 ~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~----p~~~------i~~~~~~~~~GAa~la~~ 275 (281)
.+..|+|.||...-.. +.+.+.+.+.... |... +..|.++.++|.++.+.+
T Consensus 328 ~~~givLtGG~a~lpg---i~e~~~~~f~~~vri~~P~~~~g~~~~~~~P~~ata~Gl~~~~~~ 388 (420)
T PRK09472 328 LAAGIVLTGGAAQIEG---LAACAQRVFHTQVRIGAPLNITGLTDYAQEPYYSTAVGLLHYGKE 388 (420)
T ss_pred CCCEEEEeCchhcccc---HHHHHHHHhCCCeEEeCCcccCCChhhcCCcHHHHHHHHHHHhhh
Confidence 3677999999887643 5566666554321 2110 122455678888887754
No 230
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=23.32 E-value=2.5e+02 Score=27.45 Aligned_cols=29 Identities=17% Similarity=-0.019 Sum_probs=23.6
Q ss_pred EEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecC
Q 023529 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG 61 (281)
Q Consensus 23 ~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~ 61 (281)
-.+-||+||-+|.+++++ ++++......|
T Consensus 133 ~~lviDIGGGStEl~~~~----------~~~~~~~~Sl~ 161 (496)
T PRK11031 133 QRLVVDIGGASTELVTGT----------GAQATSLFSLS 161 (496)
T ss_pred CEEEEEecCCeeeEEEec----------CCceeeeeEEe
Confidence 379999999999999998 67777666555
No 231
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=23.29 E-value=2.7e+02 Score=25.11 Aligned_cols=28 Identities=21% Similarity=-0.065 Sum_probs=22.5
Q ss_pred EEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecC
Q 023529 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG 61 (281)
Q Consensus 24 viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~ 61 (281)
.+.+|+||-++.+.+++ ++++......|
T Consensus 127 ~~v~DiGGGSte~~~~~----------~~~~~~~~Sl~ 154 (300)
T TIGR03706 127 GLVVDIGGGSTELILGK----------DFEPGEGVSLP 154 (300)
T ss_pred cEEEEecCCeEEEEEec----------CCCEeEEEEEc
Confidence 48999999999999998 66776655554
No 232
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.54 E-value=3e+02 Score=24.98 Aligned_cols=50 Identities=12% Similarity=0.104 Sum_probs=35.8
Q ss_pred EEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHHHHHHHHHHHHHHHH
Q 023529 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADAL 85 (281)
Q Consensus 23 ~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l 85 (281)
-.+-||.|-.++.++++| .++|.+-.+--+.. .+++.+-+.|++..+-.|
T Consensus 228 palvVd~GngHttaalvd----------edRI~gv~EHHT~~---Lspekled~I~rf~~GeL 277 (342)
T COG4012 228 PALVVDYGNGHTTAALVD----------EDRIVGVYEHHTIR---LSPEKLEDQIIRFVEGEL 277 (342)
T ss_pred ceEEEEccCCceEEEEec----------CCeEEEEeeccccc---CCHHHHHHHHHHHHhccc
Confidence 578999999999999999 45887766544332 567777666666555443
No 233
>COG0817 RuvC Holliday junction resolvasome, endonuclease subunit [DNA replication, recombination, and repair]
Probab=22.51 E-value=2.2e+02 Score=23.51 Aligned_cols=54 Identities=17% Similarity=0.094 Sum_probs=36.7
Q ss_pred EEEecCccceeeeeeecccCCCCCCCCCCeEEE---EecCCCCCccCCHHHHHHHHHHHHHHHHHHcC
Q 023529 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLAR---AAAGCSNHNSVGEDAARETIEKVMADALLKSG 89 (281)
Q Consensus 25 iGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~---~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~g 89 (281)
+|||=|-+.|=.++++. .++-+.. ....+... ....+-+..|.+.+++++++..
T Consensus 1 lGIDPGl~~~G~gvI~~---------~~~~l~~v~~G~I~t~~~--~~l~~RL~~l~~~l~~vl~~~~ 57 (160)
T COG0817 1 LGIDPGLRRTGYGVIEV---------EGRQLSYLASGVIRTSSD--APLAERLKQLYDGLSEVLDEYQ 57 (160)
T ss_pred CCcCCCccccceEEEEc---------cCCeEEEEeeeEEecCCC--ccHHHHHHHHHHHHHHHHHHhC
Confidence 58999999999999985 4444433 33333211 2445557888899999998864
No 234
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=21.95 E-value=3.7e+02 Score=25.51 Aligned_cols=71 Identities=14% Similarity=-0.012 Sum_probs=46.0
Q ss_pred CccccCcccccccchhcC-----CCcEEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHHHHHHH
Q 023529 2 KRYRNGEIWDFETAEESG-----GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARET 76 (281)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~-----~~~~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~ 76 (281)
+++++|.-|.|.+.++.- ....+.-.|-.|.-+-.+++|. ..++..+.-.-..+. ..+.+-+.++
T Consensus 13 ~~~~~ghpwv~~~~i~~~~~~~~~G~~v~v~~~~g~~lg~g~~n~---------~s~i~~Rils~~~~~-~~d~~~~~~r 82 (396)
T PRK15128 13 KSLLRRHPWVFSGAVARMEGKASLGETIDIVDHQGKWLARGAYSP---------ASQIRARVWTFDPDE-SIDIAFFTRR 82 (396)
T ss_pred hHHhcCCCeEEhHHhccccCCCCCCCEEEEEcCCCCEEEEEEECC---------CCCEEEEEEECCCCC-CCCHHHHHHH
Confidence 578999999999996532 2347778899999999999995 555555543311111 1354445556
Q ss_pred HHHHHH
Q 023529 77 IEKVMA 82 (281)
Q Consensus 77 i~~~i~ 82 (281)
|.++++
T Consensus 83 l~~A~~ 88 (396)
T PRK15128 83 LQQAQK 88 (396)
T ss_pred HHHHHH
Confidence 665444
No 235
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=21.20 E-value=2.5e+02 Score=26.81 Aligned_cols=46 Identities=15% Similarity=0.269 Sum_probs=34.8
Q ss_pred cEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeC--C------CCChhHHHHHHH
Q 023529 225 PLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIR--P------KVEPAVGAALLA 273 (281)
Q Consensus 225 ~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~--~------~~~~~~GAa~la 273 (281)
.||+.||-..-.. |.+++.+.|.+++|..++.. . .+++=+|+..||
T Consensus 344 nVivtGGtSliqG---~s~RL~~ELs~~~P~srlki~as~~t~eR~~~~WlGGSILA 397 (426)
T KOG0679|consen 344 NVIVTGGTSLIQG---FSERLNKELSKRAPSSRLKIIASGHTVERRFQSWLGGSILA 397 (426)
T ss_pred cEEEecCcchhhh---HHHHHHHHHHHhCCcceEEEEecCceeeehhhhhhhhHHHh
Confidence 6888888886655 78999999999998655542 2 245778888887
No 236
>PTZ00004 actin-2; Provisional
Probab=21.17 E-value=59 Score=30.46 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=33.8
Q ss_pred cEEEEcCcccCcchhhhHHHHHHHHHhhCCC---ceeeC---CCCChhHHHHHHH
Q 023529 225 PLVMVGGVLEANRRWDIGREVVKCILRDYPG---AVPIR---PKVEPAVGAALLA 273 (281)
Q Consensus 225 ~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~---~~i~~---~~~~~~~GAa~la 273 (281)
.|+|.||...-.. |.++++..|.+..|. +++.. ...++-+||..++
T Consensus 299 nIvl~GG~s~~~G---f~~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsila 350 (378)
T PTZ00004 299 NIVLSGGTTMYRG---LPERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILS 350 (378)
T ss_pred hEEeccchhcCcC---HHHHHHHHHHHhCCCCccEEEecCCCCceeEEECccccc
Confidence 6999999888765 899999999988763 34443 2345667877776
No 237
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=21.14 E-value=3.6e+02 Score=24.63 Aligned_cols=51 Identities=12% Similarity=0.113 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHh
Q 023529 193 KILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILR 251 (281)
Q Consensus 193 ~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~ 251 (281)
..+++.++++.+.+.-...... ...+..|+|.||-..... +.+.+.+.+.-
T Consensus 250 ~~~~~l~~EI~rsl~~y~~~~~-----~~~i~~I~L~Ggga~l~g---L~~~l~~~l~~ 300 (340)
T PF11104_consen 250 PFLEELAREIRRSLDFYQSQSG-----GESIERIYLSGGGARLPG---LAEYLSEELGI 300 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----------SEEEEESGGGGSTT---HHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-----CCCCCEEEEECCccchhh---HHHHHHHHHCC
Confidence 3444555555555443333322 234889999999997754 77888887764
No 238
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=20.75 E-value=2.3e+02 Score=24.16 Aligned_cols=43 Identities=9% Similarity=0.114 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHh
Q 023529 200 EELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILR 251 (281)
Q Consensus 200 ~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~ 251 (281)
.+|.+.-..+++.++ |+.|++.|-++..++.. -.+.+.+.+++
T Consensus 28 ~yl~r~~~~a~~~l~--------PD~Vi~lGDL~D~G~~~-~~~e~~e~l~R 70 (195)
T cd08166 28 RYLKKTYHLALNFVQ--------PDIVIFLGDLMDEGSIA-NDDEYYSYVQR 70 (195)
T ss_pred HHHHHHHHHHHhccC--------CCEEEEeccccCCCCCC-CHHHHHHHHHH
Confidence 356666667778888 99999999999887632 23445555544
No 239
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=20.61 E-value=4.4e+02 Score=24.30 Aligned_cols=69 Identities=10% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccEEEEcCcccCcchhhhHHHHHHHHHhhCCCceeeC-CCCChhH
Q 023529 189 EVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIR-PKVEPAV 267 (281)
Q Consensus 189 ~~A~~il~~aa~~l~~~i~~lv~~l~~~~~~~~~p~~IvLgGgv~~~~~~~~l~~~i~~~l~~~~p~~~i~~-~~~~~~~ 267 (281)
+...+++++.++.+...+...+.... .-+.|+|.||-+ ..+++.|++.+|.+.+.. |..+-+.
T Consensus 265 ~~~~~~~~~~~~~i~~~i~~~~~~~~-------~~d~IiL~GGGA---------~ll~~~lk~~f~~~~~~~~p~~ANa~ 328 (344)
T PRK13917 265 DEFYKEQDSVIDEVMSGFEIAVGNIN-------SFDRVIVTGGGA---------NIFFDSLSHWYSDVEKADESQFANVR 328 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccC-------CCCEEEEECCcH---------HHHHHHHHHHcCCeEEcCChHHHHHH
Q ss_pred HHHHHH
Q 023529 268 GAALLA 273 (281)
Q Consensus 268 GAa~la 273 (281)
|...++
T Consensus 329 G~~~~g 334 (344)
T PRK13917 329 GYYKYG 334 (344)
T ss_pred HHHHHH
No 240
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=20.49 E-value=2.4e+02 Score=27.20 Aligned_cols=82 Identities=17% Similarity=0.156 Sum_probs=44.3
Q ss_pred CCcEEEEEecCccceeeeeeecccCCCCCCCC----CCeEEEEecC-CCCCccCCHHHHHHHHHHHHHHHHHHcCCCccc
Q 023529 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDP----LPVLARAAAG-CSNHNSVGEDAARETIEKVMADALLKSGSNRSA 94 (281)
Q Consensus 20 ~~~~viGVD~GgT~~~~~l~d~~~~~~~~~~~----g~il~~~~~~-~~~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~ 94 (281)
-+.|.+-||.|.|-+|+=++-.. +.+|.. -..+.....| .+.+. .++++.-..|..+++.+.+....+.-+
T Consensus 65 ~~~Y~iiiDAGSTGsRvHvY~F~---~~~~~~~p~le~E~F~~~kPGLSsfa-ddp~~aA~Sl~~LLd~A~~~vP~~~~~ 140 (453)
T KOG1385|consen 65 KRQYAIIIDAGSTGTRVHVYKFD---QCLPGMPPELEHELFKEVKPGLSSFA-DDPEEAANSLRPLLDVAEAFVPREHWK 140 (453)
T ss_pred ceEEEEEEecCCCcceEEEEEec---cCCCCCCchhHHHHHhhcCCcccccC-CChHHHHHhHHHHHHHHHhhCCHhHhc
Confidence 35799999999999988887541 111100 0111122223 23333 567777777878777776544222222
Q ss_pred cceeEE-cccCC
Q 023529 95 VRAVCL-AVSGV 105 (281)
Q Consensus 95 i~~Igi-g~~G~ 105 (281)
..-|.+ +.+|.
T Consensus 141 kTPi~lkATAGL 152 (453)
T KOG1385|consen 141 KTPIVLKATAGL 152 (453)
T ss_pred cCceEEEeeccc
Confidence 333333 45665
No 241
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=20.39 E-value=1.4e+02 Score=28.44 Aligned_cols=48 Identities=19% Similarity=0.185 Sum_probs=31.5
Q ss_pred CcEEEEEecCccceeeeeeecccCCCCCCCCCCeEEEEecCCCCCccCCHHHHHHHHHHHHH
Q 023529 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMA 82 (281)
Q Consensus 21 ~~~viGVD~GgT~~~~~l~d~~~~~~~~~~~g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~ 82 (281)
....+.||+|+|++.+.=+- +|-++.+....+. .+.|-+-.++.+.++
T Consensus 153 rstalVvDiGa~~~svsPV~----------DG~Vlqk~vvks~----laGdFl~~~~~q~l~ 200 (426)
T KOG0679|consen 153 RSTALVVDIGATHTSVSPVH----------DGYVLQKGVVKSP----LAGDFLNDQCRQLLE 200 (426)
T ss_pred CCceEEEEecCCCceeeeee----------cceEeeeeeEecc----cchHHHHHHHHHHHh
Confidence 45778899999999877665 7888888876542 233444344444433
No 242
>PF12645 HTH_16: Helix-turn-helix domain; InterPro: IPR024760 This domain appears to be a helix-turn-helix domain, suggesting a transcriptional regulatory protein. Some proteins with this domain are annotated as conjugative transposon proteins.
Probab=20.21 E-value=1.1e+02 Score=21.20 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=15.3
Q ss_pred HHHHHHhCCHHHHH-HHHHHHHHHHH
Q 023529 180 VVSCAEAGDEVANK-ILQDSVEELAL 204 (281)
Q Consensus 180 v~~~A~~GD~~A~~-il~~aa~~l~~ 204 (281)
+..+|.+||+.|.. ||+..-.++.+
T Consensus 3 vI~~A~~GD~~A~~~IL~~y~~yI~k 28 (65)
T PF12645_consen 3 VIKAAKQGDPEAMEEILKHYEPYISK 28 (65)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 45578999998754 44444444443
No 243
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=20.21 E-value=1e+02 Score=29.69 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=17.9
Q ss_pred CCcEEEEEecCccceeeeeee
Q 023529 20 GREVILGLDGGTTSTVCICMP 40 (281)
Q Consensus 20 ~~~~viGVD~GgT~~~~~l~d 40 (281)
..+.+||||+|.|+.-++++-
T Consensus 34 ~~gtvigIdLGTTYsCVgV~k 54 (663)
T KOG0100|consen 34 KLGTVIGIDLGTTYSCVGVYK 54 (663)
T ss_pred ccceEEEEecCCceeeEEEEe
Confidence 357899999999998888875
Done!