BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023530
(281 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3O1L|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pspto_4314) From Pseudomonas Syringae Pv. Tomato Str.
Dc3000 At 2.20 A Resolution
pdb|3O1L|B Chain B, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pspto_4314) From Pseudomonas Syringae Pv. Tomato Str.
Dc3000 At 2.20 A Resolution
Length = 302
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 83/180 (46%), Gaps = 13/180 (7%)
Query: 46 VFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDED 105
V CPD VGIVAK+S +AS G I A F+ R E D + + + E
Sbjct: 26 VIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFXRHEIRADTLPFDLDGFREA 85
Query: 106 FFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH 165
F +++ F+ R+ D K +V + AS++ HCL D L+ W +L +I CVISNH
Sbjct: 86 FTPIAEEFSXD---WRITDSAQKKRVVLXASRESHCLADLLHRWHSDELDCDIACVISNH 142
Query: 166 DRGPNSHVIRFLERHGIPYHYL-----CAKXXXXXXXXXXXVQNTDFLVLARYMQPVPLQ 220
+ +E H IPY+++ + D +VLARY Q +P Q
Sbjct: 143 -----QDLRSXVEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARYXQILPPQ 197
>pdb|3OBI|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
pdb|3OBI|B Chain B, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
pdb|3OBI|C Chain C, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
pdb|3OBI|D Chain D, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Np_949368) From Rhodopseudomonas Palustris Cga009 At
1.95 A Resolution
Length = 288
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 75/180 (41%), Gaps = 12/180 (6%)
Query: 49 CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
CPD GIV+ +S + G NIL A + + F+ R F P + F
Sbjct: 13 CPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFXRVVFNAAAKVIPLASLRTGFGV 72
Query: 109 LSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG 168
++ F D + + KV +L S+ +HCL D LY W+ G L T ++SNH R
Sbjct: 73 IAAKFTXG---WHXRDRETRRKVXLLVSQSDHCLADILYRWRVGDLHXIPTAIVSNHPRE 129
Query: 169 PNSHVIRFLERHGIP-YHYLCAKXXXXXXXXXXXV----QNTDFLVLARYMQPVPLQKEA 223
S + IP YH+ K +TD +VLARY Q + + A
Sbjct: 130 TFSG----FDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLARYXQILSDEXSA 185
>pdb|3NRB|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
pdb|3NRB|B Chain B, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
pdb|3NRB|C Chain C, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
pdb|3NRB|D Chain D, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Puru, Pp_1943) From Pseudomonas Putida Kt2440 At 2.05 A
Resolution
Length = 287
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 81/175 (46%), Gaps = 20/175 (11%)
Query: 49 CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
C D GIV+++S + + G NI+ A+ F E + F+ R P+ + + F K
Sbjct: 14 CQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFXRVSVEI-PVAGVND-FNSAFGK 71
Query: 109 LSKMFNA---MRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH 165
+ + +NA R P D K KV + SK +HCL D LY + G+L E+ +ISNH
Sbjct: 72 VVEKYNAEWWFR-----PRTDRK-KVVIXVSKFDHCLGDLLYRHRLGELDXEVVGIISNH 125
Query: 166 DRGPNSHVIRFLERHGIPYHYL----CAKXXXXXXXXXXXVQN-TDFLVLARYMQ 215
R S + IP+HYL K Q+ D +VLARY Q
Sbjct: 126 PREALSVSL----VGDIPFHYLPVTPATKAAQESQIKNIVTQSQADLIVLARYXQ 176
>pdb|3LOU|A Chain A, Crystal Structure Of Formyltetrahydrofolate Deformylase
(yp_105254.1) From Burkholderia Mallei Atcc 23344 At
1.90 A Resolution
pdb|3LOU|B Chain B, Crystal Structure Of Formyltetrahydrofolate Deformylase
(yp_105254.1) From Burkholderia Mallei Atcc 23344 At
1.90 A Resolution
pdb|3LOU|C Chain C, Crystal Structure Of Formyltetrahydrofolate Deformylase
(yp_105254.1) From Burkholderia Mallei Atcc 23344 At
1.90 A Resolution
pdb|3LOU|D Chain D, Crystal Structure Of Formyltetrahydrofolate Deformylase
(yp_105254.1) From Burkholderia Mallei Atcc 23344 At
1.90 A Resolution
Length = 292
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 74/175 (42%), Gaps = 17/175 (9%)
Query: 49 CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEF--IFDPIKWPREQMDEDF 106
CP G VA + + + VF + F+ R F D + + +F
Sbjct: 17 CPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREF 76
Query: 107 FKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH- 165
+++ F R + D+ + KV + SK EHCL D L+ W+ G+L +I ++SNH
Sbjct: 77 EPIAERF---RXQWAIHDVAARPKVLIXVSKLEHCLADLLFRWKXGELKXDIVGIVSNHP 133
Query: 166 DRGPNSHVIRFLERHGIPYHY--LCAKXXXXXXXXXXXVQNT---DFLVLARYMQ 215
D P +HG+P+ + + A V T + ++LARY Q
Sbjct: 134 DFAP------LAAQHGLPFRHFPITADTKAQQEAQWLDVFETSGAELVILARYXQ 182
>pdb|3N0V|A Chain A, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pp_0327) From Pseudomonas Putida Kt2440 At 2.25 A
Resolution
pdb|3N0V|B Chain B, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pp_0327) From Pseudomonas Putida Kt2440 At 2.25 A
Resolution
pdb|3N0V|C Chain C, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pp_0327) From Pseudomonas Putida Kt2440 At 2.25 A
Resolution
pdb|3N0V|D Chain D, Crystal Structure Of A Formyltetrahydrofolate Deformylase
(Pp_0327) From Pseudomonas Putida Kt2440 At 2.25 A
Resolution
Length = 286
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 20/175 (11%)
Query: 49 CPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108
CP +G V ++ + + + F + F+ R EF + P + DE F+
Sbjct: 15 CPSXLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEF-----RQP-DDFDEAGFR 68
Query: 109 --LSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNH- 165
L++ A + + + KV + SK +HCL D LY + G+L ++ V+SNH
Sbjct: 69 AGLAERSEAFGXAFELTAPNHRPKVVIXVSKADHCLNDLLYRQRIGQLGXDVVAVVSNHP 128
Query: 166 DRGPNSHVIRFLERHGIPYHYLCAKXXXXXXXXXXXVQ-----NTDFLVLARYMQ 215
D P +H H IPY++ +Q + ++LARY Q
Sbjct: 129 DLEPLAHW------HKIPYYHFALDPKDKPGQERKVLQVIEETGAELVILARYXQ 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,105,416
Number of Sequences: 62578
Number of extensions: 251765
Number of successful extensions: 647
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 637
Number of HSP's gapped (non-prelim): 8
length of query: 281
length of database: 14,973,337
effective HSP length: 98
effective length of query: 183
effective length of database: 8,840,693
effective search space: 1617846819
effective search space used: 1617846819
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)