Query 023530
Match_columns 281
No_of_seqs 286 out of 2383
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 04:45:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023530.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023530hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0788 PurU Formyltetrahydrof 100.0 1.6E-54 3.4E-59 391.8 22.4 207 37-255 2-216 (287)
2 TIGR00655 PurU formyltetrahydr 100.0 6.5E-53 1.4E-57 390.5 23.8 207 43-261 1-218 (280)
3 PRK13010 purU formyltetrahydro 100.0 3.4E-52 7.3E-57 387.2 23.6 208 40-260 7-226 (289)
4 PRK13011 formyltetrahydrofolat 100.0 9.2E-51 2E-55 377.2 24.5 212 37-261 2-223 (286)
5 PRK06027 purU formyltetrahydro 100.0 7.9E-50 1.7E-54 371.0 24.3 208 41-261 5-223 (286)
6 PLN02828 formyltetrahydrofolat 100.0 3.3E-49 7.2E-54 363.0 22.1 199 59-261 1-205 (268)
7 COG0299 PurN Folate-dependent 100.0 6.2E-35 1.3E-39 255.1 14.5 125 129-261 1-137 (200)
8 PLN02331 phosphoribosylglycina 100.0 8.3E-32 1.8E-36 239.8 14.9 128 130-260 1-140 (207)
9 KOG3076 5'-phosphoribosylglyci 100.0 2.1E-29 4.6E-34 218.3 12.3 127 126-260 4-144 (206)
10 TIGR00639 PurN phosphoribosylg 99.9 6E-27 1.3E-31 206.1 14.8 121 129-256 1-130 (190)
11 PRK05647 purN phosphoribosylgl 99.9 1.9E-26 4.2E-31 204.4 12.8 126 128-260 1-137 (200)
12 PLN02285 methionyl-tRNA formyl 99.9 7.5E-23 1.6E-27 194.1 12.7 132 125-261 3-151 (334)
13 PF00551 Formyl_trans_N: Formy 99.9 1.7E-22 3.7E-27 175.8 12.1 125 129-260 1-136 (181)
14 COG0223 Fmt Methionyl-tRNA for 99.8 1.9E-20 4.2E-25 175.2 12.0 119 128-260 1-134 (307)
15 PRK06988 putative formyltransf 99.8 1.2E-18 2.6E-23 163.9 12.4 119 128-260 2-134 (312)
16 TIGR00460 fmt methionyl-tRNA f 99.8 5.8E-18 1.3E-22 159.3 12.4 115 129-257 1-130 (313)
17 PRK00005 fmt methionyl-tRNA fo 99.8 5.4E-18 1.2E-22 159.1 11.7 119 129-261 1-134 (309)
18 cd04893 ACT_GcvR_1 ACT domains 99.7 1.6E-17 3.5E-22 125.7 9.4 72 42-117 1-72 (77)
19 cd04875 ACT_F4HF-DF N-terminal 99.7 9.6E-17 2.1E-21 119.9 9.7 74 44-117 1-74 (74)
20 PRK08125 bifunctional UDP-gluc 99.7 2.1E-16 4.6E-21 161.5 12.7 119 129-261 1-131 (660)
21 cd04872 ACT_1ZPV ACT domain pr 99.7 3.5E-16 7.5E-21 120.8 8.9 75 42-118 1-75 (88)
22 cd04870 ACT_PSP_1 CT domains f 99.6 6.5E-16 1.4E-20 116.0 8.6 71 44-117 1-71 (75)
23 cd04869 ACT_GcvR_2 ACT domains 99.6 3.5E-15 7.6E-20 112.5 9.4 73 44-117 1-77 (81)
24 COG3830 ACT domain-containing 99.6 9.3E-16 2E-20 119.0 6.1 75 41-117 2-76 (90)
25 PRK00194 hypothetical protein; 99.6 7.2E-15 1.6E-19 113.6 9.2 76 41-118 2-77 (90)
26 PF13740 ACT_6: ACT domain; PD 99.6 5E-15 1.1E-19 111.7 7.3 73 41-117 1-73 (76)
27 PRK07579 hypothetical protein; 99.6 1.2E-14 2.7E-19 132.4 10.4 108 128-256 1-114 (245)
28 PRK11589 gcvR glycine cleavage 99.5 5.5E-14 1.2E-18 124.0 10.2 77 41-118 94-174 (190)
29 PRK11589 gcvR glycine cleavage 99.4 4.2E-12 9.1E-17 112.1 11.5 74 40-117 6-79 (190)
30 COG2716 GcvR Glycine cleavage 99.2 2.7E-11 5.9E-16 104.4 7.1 80 37-117 87-170 (176)
31 cd04871 ACT_PSP_2 ACT domains 98.9 8.5E-10 1.9E-14 85.1 4.4 72 44-117 1-80 (84)
32 KOG3082 Methionyl-tRNA formylt 98.8 2.8E-09 6.1E-14 99.2 4.7 121 128-263 6-141 (338)
33 PF01842 ACT: ACT domain; Int 98.8 2.8E-08 6.1E-13 71.0 7.4 64 43-110 1-65 (66)
34 CHL00100 ilvH acetohydroxyacid 98.5 3.3E-07 7.1E-12 80.0 7.8 74 42-117 2-75 (174)
35 PF13291 ACT_4: ACT domain; PD 98.4 2E-06 4.4E-11 64.7 8.4 67 39-109 3-69 (80)
36 COG2716 GcvR Glycine cleavage 98.4 5.4E-07 1.2E-11 78.0 5.3 93 42-139 5-101 (176)
37 cd04925 ACT_ACR_2 ACT domain-c 98.3 2.9E-06 6.3E-11 63.5 7.9 46 44-91 2-47 (74)
38 PRK08577 hypothetical protein; 98.3 6.2E-06 1.3E-10 68.7 9.1 77 34-110 48-124 (136)
39 cd04873 ACT_UUR-ACR-like ACT d 98.1 3.5E-05 7.5E-10 55.4 8.5 49 44-94 2-50 (70)
40 cd04886 ACT_ThrD-II-like C-ter 98.0 2.6E-05 5.7E-10 55.8 6.9 49 45-93 1-52 (73)
41 cd04909 ACT_PDH-BS C-terminal 98.0 3E-05 6.5E-10 56.3 7.0 63 43-108 2-64 (69)
42 cd04899 ACT_ACR-UUR-like_2 C-t 98.0 7.7E-05 1.7E-09 54.0 8.9 48 44-93 2-49 (70)
43 cd04887 ACT_MalLac-Enz ACT_Mal 97.9 4.6E-05 1E-09 55.9 7.3 61 45-110 2-62 (74)
44 cd04888 ACT_PheB-BS C-terminal 97.9 5.1E-05 1.1E-09 55.8 7.5 50 44-94 2-51 (76)
45 cd04878 ACT_AHAS N-terminal AC 97.9 5.1E-05 1.1E-09 54.1 7.3 64 44-109 2-65 (72)
46 PRK04435 hypothetical protein; 97.9 6.4E-05 1.4E-09 63.8 8.8 67 22-94 54-120 (147)
47 cd04928 ACT_TyrKc Uncharacteri 97.8 0.00022 4.7E-09 53.2 9.3 65 43-109 2-66 (68)
48 PRK06737 acetolactate synthase 97.8 9.2E-05 2E-09 56.3 7.2 67 42-110 2-68 (76)
49 cd04874 ACT_Af1403 N-terminal 97.8 0.00017 3.7E-09 51.6 8.3 62 44-109 2-63 (72)
50 cd04881 ACT_HSDH-Hom ACT_HSDH_ 97.8 0.00018 4E-09 52.1 8.6 64 43-110 1-64 (79)
51 cd04902 ACT_3PGDH-xct C-termin 97.7 0.00011 2.5E-09 53.3 6.8 61 45-109 2-62 (73)
52 cd04876 ACT_RelA-SpoT ACT dom 97.7 0.00011 2.4E-09 50.7 6.4 49 45-94 1-49 (71)
53 PRK13562 acetolactate synthase 97.7 0.00016 3.5E-09 56.0 7.1 69 42-111 2-70 (84)
54 cd04879 ACT_3PGDH-like ACT_3PG 97.7 0.00023 5.1E-09 50.4 7.4 61 45-109 2-62 (71)
55 cd04900 ACT_UUR-like_1 ACT dom 97.6 0.0008 1.7E-08 49.8 9.6 35 44-78 3-37 (73)
56 cd04927 ACT_ACR-like_2 Second 97.6 0.00082 1.8E-08 50.6 9.7 35 43-77 1-35 (76)
57 PRK03381 PII uridylyl-transfer 97.6 0.0022 4.8E-08 67.7 16.1 70 40-111 597-667 (774)
58 PRK11152 ilvM acetolactate syn 97.6 0.00044 9.5E-09 52.6 7.7 67 41-110 2-68 (76)
59 TIGR01693 UTase_glnD [Protein- 97.5 0.00018 3.9E-09 76.4 7.5 69 26-94 762-833 (850)
60 cd04877 ACT_TyrR N-terminal AC 97.5 0.00025 5.5E-09 52.6 6.1 57 44-109 2-58 (74)
61 PRK08178 acetolactate synthase 97.5 0.0006 1.3E-08 54.1 8.0 70 39-111 5-74 (96)
62 cd04897 ACT_ACR_3 ACT domain-c 97.5 0.00028 6E-09 53.5 5.8 46 43-88 2-49 (75)
63 cd04903 ACT_LSD C-terminal ACT 97.5 0.00076 1.6E-08 47.9 7.7 61 45-109 2-62 (71)
64 cd04883 ACT_AcuB C-terminal AC 97.5 0.0014 3E-08 47.6 9.1 61 44-108 3-63 (72)
65 cd04926 ACT_ACR_4 C-terminal 97.5 0.0012 2.7E-08 48.9 9.0 35 44-78 3-37 (72)
66 COG1707 ACT domain-containing 97.4 0.003 6.4E-08 55.1 11.9 136 44-213 4-150 (218)
67 cd04884 ACT_CBS C-terminal ACT 97.4 0.0011 2.3E-08 48.8 7.8 33 45-77 2-34 (72)
68 cd04889 ACT_PDH-BS-like C-term 97.4 0.0006 1.3E-08 47.6 5.9 46 45-91 1-46 (56)
69 PRK11895 ilvH acetolactate syn 97.3 0.00082 1.8E-08 58.1 7.8 68 42-111 2-69 (161)
70 TIGR00119 acolac_sm acetolacta 97.3 0.00098 2.1E-08 57.4 7.8 67 43-111 2-68 (157)
71 cd04901 ACT_3PGDH C-terminal A 97.3 0.00038 8.2E-09 50.1 4.5 58 45-108 2-59 (69)
72 cd04895 ACT_ACR_1 ACT domain-c 97.3 0.0014 3E-08 49.4 7.3 36 43-78 2-37 (72)
73 KOG2452 Formyltetrahydrofolate 97.3 0.00044 9.5E-09 68.5 5.8 136 129-277 1-158 (881)
74 cd04905 ACT_CM-PDT C-terminal 97.3 0.0023 5.1E-08 48.0 8.7 65 44-111 3-68 (80)
75 cd04882 ACT_Bt0572_2 C-termina 97.2 0.0022 4.8E-08 45.3 7.1 59 44-108 1-59 (65)
76 cd04908 ACT_Bt0572_1 N-termina 97.1 0.0021 4.6E-08 46.5 6.9 36 43-78 2-37 (66)
77 cd02116 ACT ACT domains are co 97.1 0.003 6.5E-08 41.1 7.1 34 45-78 1-34 (60)
78 cd04880 ACT_AAAH-PDT-like ACT 97.1 0.0034 7.3E-08 46.4 8.0 33 45-77 2-34 (75)
79 PF13710 ACT_5: ACT domain; PD 97.0 0.0027 5.8E-08 46.3 6.5 58 51-110 1-58 (63)
80 cd04896 ACT_ACR-like_3 ACT dom 96.8 0.013 2.9E-07 44.4 8.9 33 44-76 2-34 (75)
81 TIGR00719 sda_beta L-serine de 96.7 0.0054 1.2E-07 54.8 7.6 67 23-93 133-199 (208)
82 PRK07334 threonine dehydratase 96.7 0.011 2.4E-07 57.6 10.2 70 36-109 320-392 (403)
83 PRK05092 PII uridylyl-transfer 96.5 0.0042 9.1E-08 66.8 5.9 40 39-78 840-879 (931)
84 PRK10872 relA (p)ppGpp synthet 96.3 0.019 4.1E-07 60.4 9.6 67 40-110 664-730 (743)
85 cd04931 ACT_PAH ACT domain of 96.3 0.056 1.2E-06 42.2 9.9 69 42-116 14-85 (90)
86 cd04885 ACT_ThrD-I Tandem C-te 96.3 0.019 4.2E-07 41.8 6.8 60 45-108 1-61 (68)
87 COG4492 PheB ACT domain-contai 96.1 0.025 5.4E-07 47.5 7.4 80 22-107 57-136 (150)
88 PRK03381 PII uridylyl-transfer 96.0 0.033 7.2E-07 58.9 9.6 56 23-78 687-743 (774)
89 PRK11092 bifunctional (p)ppGpp 96.0 0.04 8.7E-07 57.8 9.9 66 40-110 624-689 (702)
90 cd04894 ACT_ACR-like_1 ACT dom 95.9 0.048 1E-06 40.1 7.2 63 44-110 2-68 (69)
91 PF13840 ACT_7: ACT domain ; P 95.9 0.011 2.3E-07 43.2 3.6 35 42-76 6-44 (65)
92 TIGR00691 spoT_relA (p)ppGpp s 95.8 0.05 1.1E-06 56.9 9.7 66 40-110 608-673 (683)
93 cd04904 ACT_AAAH ACT domain of 95.8 0.053 1.1E-06 40.4 7.2 62 45-111 3-65 (74)
94 PRK11790 D-3-phosphoglycerate 95.8 0.023 5.1E-07 55.7 6.8 65 39-109 335-399 (409)
95 PRK05092 PII uridylyl-transfer 95.5 0.071 1.5E-06 57.5 9.7 70 39-110 729-804 (931)
96 PRK05007 PII uridylyl-transfer 95.5 0.03 6.6E-07 60.1 6.7 52 35-86 801-854 (884)
97 KOG2663 Acetolactate synthase, 95.4 0.026 5.7E-07 52.1 5.1 72 41-114 76-147 (309)
98 TIGR01127 ilvA_1Cterm threonin 95.4 0.074 1.6E-06 51.3 8.5 71 37-108 300-373 (380)
99 PRK04374 PII uridylyl-transfer 95.4 0.045 9.7E-07 58.7 7.6 58 21-78 774-832 (869)
100 PRK03059 PII uridylyl-transfer 95.0 0.17 3.6E-06 54.3 10.7 56 23-78 766-822 (856)
101 COG0440 IlvH Acetolactate synt 94.9 0.28 6.1E-06 42.5 9.8 73 41-115 3-75 (163)
102 cd04913 ACT_AKii-LysC-BS-like_ 94.9 0.17 3.7E-06 36.0 7.3 65 45-114 4-69 (75)
103 PRK01759 glnD PII uridylyl-tra 94.9 0.059 1.3E-06 57.7 6.7 51 36-86 777-829 (854)
104 PRK13581 D-3-phosphoglycerate 94.8 0.051 1.1E-06 55.0 5.9 75 27-109 441-515 (526)
105 COG0317 SpoT Guanosine polypho 94.8 0.16 3.6E-06 53.1 9.6 67 39-110 624-690 (701)
106 PRK08818 prephenate dehydrogen 94.6 0.18 3.8E-06 49.1 8.8 51 41-92 294-345 (370)
107 PRK08198 threonine dehydratase 94.6 0.11 2.5E-06 50.4 7.5 44 34-77 319-362 (404)
108 cd04930 ACT_TH ACT domain of t 94.5 0.19 4.1E-06 41.0 7.5 61 43-110 42-105 (115)
109 TIGR01327 PGDH D-3-phosphoglyc 94.5 0.052 1.1E-06 54.9 5.0 64 26-93 439-502 (525)
110 cd04929 ACT_TPH ACT domain of 94.4 0.23 5.1E-06 37.3 7.2 58 47-111 5-65 (74)
111 PRK11899 prephenate dehydratas 94.1 0.41 8.8E-06 44.9 9.8 65 42-111 194-261 (279)
112 COG4747 ACT domain-containing 94.1 2.9 6.2E-05 34.8 13.3 93 44-157 5-98 (142)
113 PRK06382 threonine dehydratase 93.9 0.25 5.5E-06 48.3 8.4 71 37-108 325-398 (406)
114 PRK00275 glnD PII uridylyl-tra 93.8 0.48 1E-05 51.1 10.9 39 40-78 812-850 (895)
115 PRK05007 PII uridylyl-transfer 93.7 0.34 7.4E-06 52.1 9.5 45 39-84 698-742 (884)
116 COG2102 Predicted ATPases of P 93.6 0.64 1.4E-05 42.3 9.7 80 129-211 1-93 (223)
117 PRK06349 homoserine dehydrogen 93.5 0.39 8.5E-06 47.3 8.9 67 39-110 345-411 (426)
118 PRK01759 glnD PII uridylyl-tra 93.5 0.39 8.6E-06 51.5 9.5 50 40-90 675-724 (854)
119 PRK06545 prephenate dehydrogen 93.2 0.31 6.8E-06 46.8 7.6 37 40-76 288-324 (359)
120 cd04932 ACT_AKiii-LysC-EC_1 AC 93.1 0.53 1.1E-05 35.3 7.1 32 44-75 3-37 (75)
121 cd04892 ACT_AK-like_2 ACT doma 93.1 0.89 1.9E-05 30.9 7.9 34 44-77 2-38 (65)
122 PRK09436 thrA bifunctional asp 93.0 1.3 2.8E-05 47.4 12.4 102 41-162 395-504 (819)
123 COG1570 XseA Exonuclease VII, 92.9 0.73 1.6E-05 45.8 9.6 69 80-151 87-158 (440)
124 COG2844 GlnD UTP:GlnB (protein 92.8 0.24 5.2E-06 52.5 6.5 55 23-77 771-826 (867)
125 PRK00275 glnD PII uridylyl-tra 92.8 0.49 1.1E-05 51.1 9.0 50 41-91 703-752 (895)
126 COG2150 Predicted regulator of 92.7 0.53 1.1E-05 40.8 7.3 48 44-91 97-144 (167)
127 PRK04374 PII uridylyl-transfer 92.6 0.6 1.3E-05 50.3 9.4 70 38-109 686-758 (869)
128 PRK03059 PII uridylyl-transfer 92.6 0.8 1.7E-05 49.2 10.2 52 39-91 675-726 (856)
129 PRK08300 acetaldehyde dehydrog 92.5 0.39 8.4E-06 45.6 7.0 73 127-212 3-78 (302)
130 TIGR01693 UTase_glnD [Protein- 92.4 0.68 1.5E-05 49.6 9.4 39 40-78 666-704 (850)
131 cd04922 ACT_AKi-HSDH-ThrA_2 AC 92.4 1.2 2.5E-05 31.2 7.8 33 44-76 3-38 (66)
132 TIGR00289 conserved hypothetic 92.3 1.4 3E-05 40.1 10.0 102 129-239 1-121 (222)
133 cd01994 Alpha_ANH_like_IV This 92.0 1.5 3.2E-05 38.8 9.6 102 130-239 1-124 (194)
134 TIGR00290 MJ0570_dom MJ0570-re 91.9 1.4 3.1E-05 40.0 9.6 103 129-239 1-121 (223)
135 PRK08526 threonine dehydratase 91.9 0.67 1.5E-05 45.5 8.0 42 36-77 320-361 (403)
136 cd04906 ACT_ThrD-I_1 First of 91.9 0.75 1.6E-05 35.0 6.7 32 43-76 2-33 (85)
137 COG3978 Acetolactate synthase 91.7 1.4 3E-05 34.0 7.7 68 41-111 2-69 (86)
138 cd04919 ACT_AK-Hom3_2 ACT doma 91.4 1.8 4E-05 30.4 8.0 35 43-77 2-39 (66)
139 cd04924 ACT_AK-Arch_2 ACT doma 91.4 1.9 4.1E-05 30.0 8.0 35 43-77 2-39 (66)
140 cd04937 ACT_AKi-DapG-BS_2 ACT 91.3 1.9 4.2E-05 30.6 8.1 33 43-75 2-37 (64)
141 TIGR03215 ac_ald_DH_ac acetald 91.2 1.1 2.4E-05 42.1 8.4 51 128-186 1-53 (285)
142 cd04912 ACT_AKiii-LysC-EC-like 91.0 1.1 2.3E-05 33.2 6.6 32 44-75 3-37 (75)
143 PRK10696 tRNA 2-thiocytidine b 90.7 2.3 5.1E-05 38.8 9.9 79 101-188 11-94 (258)
144 TIGR01761 thiaz-red thiazoliny 90.6 0.59 1.3E-05 45.0 6.1 51 127-184 2-52 (343)
145 PLN02819 lysine-ketoglutarate 90.1 7.7 0.00017 42.8 14.6 159 43-211 462-655 (1042)
146 PF01902 ATP_bind_4: ATP-bindi 89.8 1.5 3.2E-05 39.7 7.7 103 129-239 1-121 (218)
147 COG0077 PheA Prephenate dehydr 89.3 3.3 7.2E-05 38.9 9.7 64 42-110 194-260 (279)
148 PF01171 ATP_bind_3: PP-loop f 89.3 4 8.7E-05 35.0 9.8 58 130-188 1-65 (182)
149 PRK10622 pheA bifunctional cho 88.9 2.4 5.2E-05 41.5 9.0 64 41-111 298-364 (386)
150 COG2061 ACT-domain-containing 88.7 11 0.00025 32.6 11.7 105 40-151 3-110 (170)
151 PRK10820 DNA-binding transcrip 88.4 1.4 3E-05 44.6 7.2 32 44-75 2-33 (520)
152 COG3453 Uncharacterized protei 88.2 2 4.3E-05 35.7 6.6 54 158-211 29-92 (130)
153 PRK09466 metL bifunctional asp 88.2 7.9 0.00017 41.6 12.9 101 41-163 390-499 (810)
154 COG4569 MhpF Acetaldehyde dehy 88.1 2.3 5E-05 38.7 7.5 55 126-186 2-57 (310)
155 cd04933 ACT_AK1-AT_1 ACT domai 88.1 2.1 4.5E-05 32.5 6.3 27 49-75 11-37 (78)
156 PRK05447 1-deoxy-D-xylulose 5- 88.0 1.9 4.1E-05 42.3 7.5 78 128-211 1-98 (385)
157 PRK08639 threonine dehydratase 87.9 2.2 4.8E-05 42.0 8.0 75 33-108 327-401 (420)
158 TIGR02079 THD1 threonine dehyd 87.8 2.5 5.3E-05 41.5 8.3 44 33-76 316-359 (409)
159 cd04916 ACT_AKiii-YclM-BS_2 AC 87.8 5.4 0.00012 27.7 8.1 34 44-77 3-39 (66)
160 cd04891 ACT_AK-LysC-DapG-like_ 87.4 3.7 8E-05 27.5 6.8 28 50-77 9-36 (61)
161 PF01408 GFO_IDH_MocA: Oxidore 87.4 2.3 5E-05 33.3 6.5 68 129-214 1-72 (120)
162 cd04935 ACT_AKiii-DAPDC_1 ACT 87.1 2.1 4.6E-05 31.9 5.8 27 49-75 11-37 (75)
163 PLN02317 arogenate dehydratase 87.0 4.9 0.00011 39.5 9.7 35 41-77 284-318 (382)
164 cd04868 ACT_AK-like ACT domain 87.0 1.5 3.4E-05 29.0 4.6 33 44-76 2-37 (60)
165 cd04918 ACT_AK1-AT_2 ACT domai 86.9 4.8 0.0001 28.8 7.4 35 43-77 2-38 (65)
166 PLN02696 1-deoxy-D-xylulose-5- 86.7 2.6 5.7E-05 42.2 7.8 79 127-211 56-156 (454)
167 cd04936 ACT_AKii-LysC-BS-like_ 86.3 6.5 0.00014 26.8 7.7 32 44-75 2-36 (63)
168 PRK11898 prephenate dehydratas 84.3 7.9 0.00017 36.2 9.4 65 42-111 196-264 (283)
169 cd04915 ACT_AK-Ectoine_2 ACT d 84.1 9.6 0.00021 27.4 7.9 34 43-76 3-38 (66)
170 TIGR02432 lysidine_TilS_N tRNA 83.8 11 0.00023 32.3 9.4 91 130-221 1-116 (189)
171 cd04923 ACT_AK-LysC-DapG-like_ 83.6 10 0.00022 25.8 7.6 32 44-75 2-36 (63)
172 TIGR00243 Dxr 1-deoxy-D-xylulo 83.5 6.1 0.00013 38.9 8.5 83 128-216 1-107 (389)
173 PRK00907 hypothetical protein; 82.9 5.4 0.00012 31.4 6.5 66 41-110 16-83 (92)
174 COG3283 TyrR Transcriptional r 82.4 2.4 5.3E-05 41.7 5.2 103 44-165 2-107 (511)
175 PRK06291 aspartate kinase; Pro 82.3 23 0.0005 35.3 12.4 36 42-77 321-359 (465)
176 TIGR01268 Phe4hydrox_tetr phen 82.2 6.3 0.00014 39.3 8.2 64 42-111 16-82 (436)
177 cd04921 ACT_AKi-HSDH-ThrA-like 81.9 12 0.00027 27.1 8.0 33 44-76 3-38 (80)
178 cd04934 ACT_AK-Hom3_1 CT domai 81.8 4.3 9.4E-05 30.2 5.4 25 51-75 13-37 (73)
179 PF02670 DXP_reductoisom: 1-de 81.0 4.9 0.00011 33.5 6.0 52 131-188 1-54 (129)
180 cd04890 ACT_AK-like_1 ACT doma 80.7 13 0.00027 25.9 7.3 31 45-75 3-36 (62)
181 COG0673 MviM Predicted dehydro 80.7 7.6 0.00016 36.0 7.9 68 127-211 2-74 (342)
182 COG3603 Uncharacterized conser 80.3 5.2 0.00011 33.2 5.7 35 43-77 64-101 (128)
183 PRK08841 aspartate kinase; Val 80.3 6.9 0.00015 38.3 7.7 63 41-116 317-379 (392)
184 PRK06635 aspartate kinase; Rev 80.0 7.1 0.00015 37.8 7.7 35 41-75 339-376 (404)
185 PRK15385 magnesium transport p 79.8 25 0.00053 32.2 10.5 80 41-122 141-222 (225)
186 PF03807 F420_oxidored: NADP o 79.1 9.7 0.00021 28.6 6.7 66 130-211 1-68 (96)
187 TIGR03590 PseG pseudaminic aci 78.3 14 0.0003 34.1 8.7 81 138-226 14-100 (279)
188 PRK10660 tilS tRNA(Ile)-lysidi 78.3 8.5 0.00018 38.2 7.7 61 128-188 15-82 (436)
189 COG2844 GlnD UTP:GlnB (protein 77.8 13 0.00029 39.8 9.2 51 29-79 670-721 (867)
190 cd04920 ACT_AKiii-DAPDC_2 ACT 77.5 19 0.00042 25.5 7.5 32 44-75 2-36 (63)
191 PRK12483 threonine dehydratase 77.2 13 0.00027 38.0 8.7 42 34-77 337-378 (521)
192 PRK00341 hypothetical protein; 76.9 18 0.00038 28.3 7.6 65 42-111 17-83 (91)
193 PRK02047 hypothetical protein; 76.7 27 0.00058 27.2 8.6 68 40-111 14-83 (91)
194 cd01992 PP-ATPase N-terminal d 76.7 23 0.00049 29.9 9.1 92 130-222 1-114 (185)
195 PRK05472 redox-sensing transcr 76.5 8.4 0.00018 34.1 6.5 69 127-212 83-154 (213)
196 cd04914 ACT_AKi-DapG-BS_1 ACT 76.4 23 0.00049 25.6 7.7 34 43-76 2-36 (67)
197 PF10727 Rossmann-like: Rossma 76.1 3.1 6.8E-05 34.4 3.4 76 125-224 7-83 (127)
198 PRK07634 pyrroline-5-carboxyla 76.0 12 0.00026 33.3 7.4 68 128-211 4-73 (245)
199 PF03054 tRNA_Me_trans: tRNA m 75.8 7.2 0.00016 37.9 6.3 88 129-220 1-132 (356)
200 PLN02551 aspartokinase 75.4 63 0.0014 33.0 13.1 87 41-137 365-454 (521)
201 COG4747 ACT domain-containing 74.0 13 0.00029 30.9 6.4 61 43-110 70-130 (142)
202 TIGR03693 ocin_ThiF_like putat 73.9 15 0.00033 38.3 8.3 76 127-211 128-211 (637)
203 PRK14449 acylphosphatase; Prov 73.9 19 0.00041 27.8 7.1 60 101-164 17-76 (90)
204 PRK09181 aspartate kinase; Val 73.4 82 0.0018 31.8 13.3 82 41-138 328-412 (475)
205 PRK13302 putative L-aspartate 72.7 17 0.00036 33.7 7.7 49 128-183 6-55 (271)
206 PLN02550 threonine dehydratase 71.8 14 0.0003 38.4 7.5 37 39-77 414-450 (591)
207 PF04273 DUF442: Putative phos 71.7 24 0.00053 28.4 7.5 65 133-203 9-83 (110)
208 PRK00227 glnD PII uridylyl-tra 71.7 12 0.00027 39.4 7.3 63 42-108 546-611 (693)
209 PRK00994 F420-dependent methyl 71.4 20 0.00044 33.3 7.6 34 155-188 60-94 (277)
210 TIGR03759 conj_TIGR03759 integ 71.4 32 0.00069 30.9 8.8 58 127-188 108-166 (200)
211 TIGR01270 Trp_5_monoox tryptop 70.9 26 0.00057 35.3 9.0 64 41-111 30-97 (464)
212 PRK08210 aspartate kinase I; R 70.9 19 0.00042 34.9 8.1 62 41-115 338-402 (403)
213 TIGR00656 asp_kin_monofn aspar 70.8 19 0.00041 34.9 8.0 61 41-114 336-399 (401)
214 PRK14423 acylphosphatase; Prov 70.4 20 0.00044 27.8 6.6 59 101-163 19-77 (92)
215 COG1254 AcyP Acylphosphatases 69.8 28 0.0006 27.4 7.2 59 101-163 18-76 (92)
216 cd01993 Alpha_ANH_like_II This 69.2 18 0.00038 30.4 6.6 58 130-188 1-67 (185)
217 PRK14430 acylphosphatase; Prov 68.3 25 0.00055 27.3 6.7 59 102-164 19-77 (92)
218 PRK14561 hypothetical protein; 68.3 12 0.00025 32.9 5.4 54 129-188 1-57 (194)
219 PRK14433 acylphosphatase; Prov 67.5 20 0.00042 27.7 5.9 60 101-164 15-74 (87)
220 PRK14451 acylphosphatase; Prov 67.5 26 0.00056 27.1 6.6 60 101-164 17-76 (89)
221 PRK14429 acylphosphatase; Prov 67.4 29 0.00063 26.8 6.8 59 102-164 17-75 (90)
222 PRK09224 threonine dehydratase 67.3 31 0.00067 34.9 8.8 70 35-108 321-391 (504)
223 PF00708 Acylphosphatase: Acyl 67.0 28 0.00062 26.5 6.7 59 101-163 18-76 (91)
224 PRK14447 acylphosphatase; Prov 66.6 26 0.00056 27.4 6.5 60 102-164 19-78 (95)
225 TIGR01124 ilvA_2Cterm threonin 66.5 18 0.0004 36.5 7.1 71 33-108 316-387 (499)
226 PRK14431 acylphosphatase; Prov 66.5 26 0.00056 27.1 6.4 58 102-164 17-75 (89)
227 TIGR00268 conserved hypothetic 66.4 19 0.00042 32.7 6.6 56 128-188 12-72 (252)
228 PRK14436 acylphosphatase; Prov 65.9 33 0.00071 26.6 6.9 60 101-164 18-77 (91)
229 PF10087 DUF2325: Uncharacteri 65.8 22 0.00047 27.5 5.9 50 160-210 3-54 (97)
230 PRK14426 acylphosphatase; Prov 65.6 31 0.00067 26.8 6.7 61 100-164 17-78 (92)
231 PRK14664 tRNA-specific 2-thiou 65.2 22 0.00048 34.6 7.0 86 127-217 4-121 (362)
232 PRK14438 acylphosphatase; Prov 64.9 28 0.00061 26.9 6.3 60 101-164 17-76 (91)
233 PRK14445 acylphosphatase; Prov 64.8 28 0.00061 26.9 6.4 60 101-164 18-77 (91)
234 COG0394 Wzb Protein-tyrosine-p 64.7 22 0.00048 29.7 6.1 78 128-212 2-84 (139)
235 PRK14427 acylphosphatase; Prov 64.6 31 0.00067 27.0 6.5 60 101-164 20-79 (94)
236 PF01118 Semialdhyde_dh: Semia 64.5 12 0.00025 30.0 4.3 91 130-240 1-103 (121)
237 PRK14437 acylphosphatase; Prov 64.3 31 0.00066 27.9 6.6 60 100-163 36-95 (109)
238 PRK14422 acylphosphatase; Prov 64.2 35 0.00076 26.6 6.8 59 101-163 20-78 (93)
239 PRK14441 acylphosphatase; Prov 64.0 32 0.00069 26.8 6.5 60 101-164 19-78 (93)
240 PRK09034 aspartate kinase; Rev 63.7 88 0.0019 31.2 11.2 32 43-74 309-343 (454)
241 PRK13304 L-aspartate dehydroge 63.6 32 0.00069 31.6 7.6 50 128-184 1-51 (265)
242 PRK14444 acylphosphatase; Prov 63.3 37 0.00081 26.3 6.8 59 101-163 18-76 (92)
243 PRK13602 putative ribosomal pr 63.1 28 0.00061 26.5 5.9 60 144-210 18-78 (82)
244 PRK14428 acylphosphatase; Prov 62.8 39 0.00085 26.7 6.9 60 101-164 22-81 (97)
245 PRK08210 aspartate kinase I; R 62.8 58 0.0013 31.6 9.5 35 42-76 271-306 (403)
246 COG0240 GpsA Glycerol-3-phosph 62.7 22 0.00048 34.3 6.4 73 128-211 1-78 (329)
247 PRK06683 hypothetical protein; 62.5 37 0.0008 25.9 6.5 49 134-188 12-60 (82)
248 PRK07431 aspartate kinase; Pro 62.0 32 0.0007 35.2 8.0 63 41-116 518-583 (587)
249 PRK06635 aspartate kinase; Rev 61.7 1.1E+02 0.0023 29.6 11.2 35 43-77 263-298 (404)
250 PRK14425 acylphosphatase; Prov 61.7 41 0.00089 26.2 6.8 60 101-164 20-79 (94)
251 PRK12446 undecaprenyldiphospho 61.5 35 0.00076 32.5 7.7 80 128-214 1-102 (352)
252 PRK14452 acylphosphatase; Prov 61.5 42 0.00092 27.0 7.0 61 100-164 33-93 (107)
253 PRK14450 acylphosphatase; Prov 61.5 39 0.00084 26.1 6.6 61 101-164 16-76 (91)
254 PRK09436 thrA bifunctional asp 61.4 1E+02 0.0023 33.2 11.9 36 41-76 314-352 (819)
255 PF07485 DUF1529: Domain of Un 61.3 16 0.00035 30.2 4.6 49 55-108 69-118 (123)
256 PRK07431 aspartate kinase; Pro 61.2 1.1E+02 0.0024 31.4 11.6 87 44-138 441-529 (587)
257 TIGR03679 arCOG00187 arCOG0018 61.2 60 0.0013 29.0 8.7 74 133-210 2-92 (218)
258 PF00185 OTCace: Aspartate/orn 61.0 56 0.0012 27.7 8.1 110 128-254 2-135 (158)
259 PRK14448 acylphosphatase; Prov 61.0 49 0.0011 25.5 7.1 59 101-163 16-74 (90)
260 PRK14442 acylphosphatase; Prov 60.9 37 0.00079 26.3 6.3 60 101-164 18-77 (91)
261 PRK14440 acylphosphatase; Prov 60.7 43 0.00094 25.9 6.7 60 101-164 17-76 (90)
262 PRK14420 acylphosphatase; Prov 60.4 38 0.00082 26.1 6.3 59 102-164 17-75 (91)
263 TIGR00237 xseA exodeoxyribonuc 60.1 1.9E+02 0.004 28.8 15.0 76 81-159 82-160 (432)
264 PRK14421 acylphosphatase; Prov 60.0 49 0.0011 26.2 7.0 59 102-164 19-77 (99)
265 TIGR00656 asp_kin_monofn aspar 59.6 1.1E+02 0.0023 29.7 10.7 35 42-76 260-297 (401)
266 PTZ00345 glycerol-3-phosphate 59.4 36 0.00077 33.1 7.4 89 127-223 10-107 (365)
267 PRK14446 acylphosphatase; Prov 59.2 37 0.00081 26.3 6.1 59 102-164 17-75 (88)
268 cd05017 SIS_PGI_PMI_1 The memb 58.9 46 0.001 26.3 6.8 54 128-189 43-98 (119)
269 cd01075 NAD_bind_Leu_Phe_Val_D 58.8 57 0.0012 28.7 8.0 83 128-231 28-112 (200)
270 PRK00143 mnmA tRNA-specific 2- 58.7 38 0.00083 32.5 7.4 85 129-218 1-130 (346)
271 PRK13820 argininosuccinate syn 58.6 29 0.00062 34.2 6.6 57 128-188 2-63 (394)
272 PRK09034 aspartate kinase; Rev 58.4 44 0.00095 33.3 8.0 62 41-113 384-448 (454)
273 TIGR00657 asp_kinases aspartat 58.2 40 0.00087 33.2 7.6 35 41-75 377-414 (441)
274 PRK04998 hypothetical protein; 58.0 83 0.0018 24.1 7.9 68 40-112 13-81 (88)
275 PRK14435 acylphosphatase; Prov 58.0 45 0.00098 25.7 6.4 60 101-164 16-75 (90)
276 PF07991 IlvN: Acetohydroxy ac 57.8 27 0.00058 30.5 5.5 117 128-267 4-143 (165)
277 PF10686 DUF2493: Protein of u 57.7 50 0.0011 24.5 6.3 59 128-188 3-64 (71)
278 PRK00286 xseA exodeoxyribonucl 57.6 2E+02 0.0043 28.3 14.2 69 81-152 88-159 (438)
279 PRK14432 acylphosphatase; Prov 57.3 54 0.0012 25.5 6.8 60 101-164 16-76 (93)
280 COG0482 TrmU Predicted tRNA(5- 57.3 34 0.00073 33.4 6.7 89 127-219 2-131 (356)
281 PRK09181 aspartate kinase; Val 57.3 41 0.0009 33.9 7.6 64 41-115 401-466 (475)
282 cd04917 ACT_AKiii-LysC-EC_2 AC 57.1 64 0.0014 22.5 7.7 32 43-76 2-36 (64)
283 PRK12767 carbamoyl phosphate s 56.3 44 0.00094 30.9 7.2 72 128-210 1-75 (326)
284 COG0527 LysC Aspartokinases [A 56.1 73 0.0016 31.9 9.1 40 39-78 304-346 (447)
285 COG4693 PchG Oxidoreductase (N 56.0 20 0.00043 34.3 4.7 54 127-188 3-57 (361)
286 COG0743 Dxr 1-deoxy-D-xylulose 55.5 50 0.0011 32.4 7.5 78 128-211 1-96 (385)
287 PF09419 PGP_phosphatase: Mito 55.1 40 0.00087 29.3 6.3 70 141-212 63-143 (168)
288 cd01997 GMP_synthase_C The C-t 54.9 48 0.001 31.3 7.2 55 130-188 1-61 (295)
289 PRK06291 aspartate kinase; Pro 54.8 49 0.0011 33.0 7.7 64 41-115 397-463 (465)
290 PRK11133 serB phosphoserine ph 54.7 84 0.0018 29.9 8.9 108 26-148 15-133 (322)
291 PRK03868 glucose-6-phosphate i 54.3 46 0.001 32.9 7.3 56 129-188 112-173 (410)
292 PRK00726 murG undecaprenyldiph 54.2 67 0.0015 29.8 8.1 79 128-213 1-100 (357)
293 COG2117 Predicted subunit of t 53.2 30 0.00065 30.5 5.0 56 129-188 1-58 (198)
294 TIGR00177 molyb_syn molybdenum 53.1 48 0.001 27.5 6.3 48 172-221 31-83 (144)
295 cd05293 LDH_1 A subgroup of L- 53.0 48 0.001 31.4 6.9 78 128-216 3-84 (312)
296 PRK14443 acylphosphatase; Prov 52.8 68 0.0015 25.1 6.7 59 102-164 19-78 (93)
297 TIGR00512 salvage_mtnA S-methy 52.7 67 0.0015 31.0 7.9 70 130-210 147-231 (331)
298 COG0345 ProC Pyrroline-5-carbo 52.4 59 0.0013 30.4 7.3 68 128-211 1-69 (266)
299 PRK14665 mnmA tRNA-specific 2- 52.2 66 0.0014 31.2 7.9 56 128-188 5-67 (360)
300 PLN02551 aspartokinase 51.9 52 0.0011 33.6 7.4 62 41-113 444-507 (521)
301 PF04359 DUF493: Protein of un 51.7 28 0.00061 26.3 4.3 70 39-112 7-78 (85)
302 PRK13600 putative ribosomal pr 51.7 26 0.00055 27.1 4.0 45 143-189 19-63 (84)
303 cd01990 Alpha_ANH_like_I This 51.2 51 0.0011 28.4 6.4 54 131-188 1-59 (202)
304 PF05088 Bac_GDH: Bacterial NA 51.2 76 0.0017 36.7 9.1 78 37-114 12-108 (1528)
305 cd01995 ExsB ExsB is a transcr 51.0 1.4E+02 0.003 24.9 8.9 79 130-214 1-86 (169)
306 COG2179 Predicted hydrolase of 50.5 48 0.001 29.2 5.9 65 140-212 49-117 (175)
307 PRK10126 tyrosine phosphatase; 50.3 1E+02 0.0022 25.6 7.8 79 128-213 2-84 (147)
308 PRK13601 putative L7Ae-like ri 50.3 30 0.00064 26.5 4.2 59 134-203 9-67 (82)
309 PF00448 SRP54: SRP54-type pro 49.6 1.4E+02 0.003 26.2 8.9 56 130-188 2-63 (196)
310 PRK09977 putative Mg(2+) trans 49.6 1.3E+02 0.0027 27.3 8.7 62 42-108 144-205 (215)
311 PF00205 TPP_enzyme_M: Thiamin 49.5 17 0.00037 29.4 2.9 43 171-213 29-86 (137)
312 cd01988 Na_H_Antiporter_C The 49.4 37 0.00081 26.2 4.8 41 173-213 61-103 (132)
313 PF00266 Aminotran_5: Aminotra 49.2 1E+02 0.0022 28.9 8.6 76 130-212 63-147 (371)
314 KOG2741 Dimeric dihydrodiol de 49.1 64 0.0014 31.4 7.1 72 126-211 4-79 (351)
315 PRK10206 putative oxidoreducta 48.9 54 0.0012 31.2 6.6 67 128-212 1-72 (344)
316 COG3007 Uncharacterized paraqu 48.4 1.4E+02 0.0031 28.8 9.1 93 124-218 37-147 (398)
317 PRK13980 NAD synthetase; Provi 48.3 1.3E+02 0.0028 27.6 8.8 58 128-188 30-92 (265)
318 COG0037 MesJ tRNA(Ile)-lysidin 48.3 1.5E+02 0.0032 27.0 9.3 58 128-188 21-85 (298)
319 PF01210 NAD_Gly3P_dh_N: NAD-d 48.1 15 0.00032 30.8 2.4 85 130-226 1-90 (157)
320 KOG2805 tRNA (5-methylaminomet 48.0 70 0.0015 31.0 7.1 59 126-188 3-74 (377)
321 PF14085 DUF4265: Domain of un 47.5 1.4E+02 0.0031 24.0 8.0 60 42-112 52-112 (117)
322 TIGR00420 trmU tRNA (5-methyla 47.2 75 0.0016 30.7 7.4 87 129-220 1-133 (352)
323 cd01998 tRNA_Me_trans tRNA met 47.0 56 0.0012 31.4 6.5 54 130-188 1-67 (349)
324 TIGR02689 ars_reduc_gluta arse 46.9 54 0.0012 26.4 5.5 74 129-211 1-78 (126)
325 TIGR01133 murG undecaprenyldip 46.7 89 0.0019 28.6 7.6 77 129-212 1-98 (348)
326 PRK09084 aspartate kinase III; 46.5 1.4E+02 0.0029 29.8 9.3 35 41-75 305-342 (448)
327 COG0769 MurE UDP-N-acetylmuram 46.4 2.7E+02 0.0058 28.1 11.4 66 97-168 306-371 (475)
328 PRK14424 acylphosphatase; Prov 46.2 1E+02 0.0023 24.1 6.8 59 101-163 21-79 (94)
329 PRK00973 glucose-6-phosphate i 46.2 45 0.00097 33.4 5.8 55 130-188 134-196 (446)
330 PRK04207 glyceraldehyde-3-phos 46.2 55 0.0012 31.4 6.2 49 128-184 1-50 (341)
331 COG2243 CobF Precorrin-2 methy 46.0 2.1E+02 0.0045 26.3 9.7 101 99-215 69-177 (234)
332 TIGR00884 guaA_Cterm GMP synth 45.9 75 0.0016 30.2 7.1 56 129-188 17-78 (311)
333 PRK01018 50S ribosomal protein 45.1 37 0.00081 26.7 4.1 49 134-188 17-65 (99)
334 PRK12439 NAD(P)H-dependent gly 44.7 52 0.0011 31.3 5.8 24 125-148 4-28 (341)
335 TIGR03376 glycerol3P_DH glycer 44.3 84 0.0018 30.2 7.2 86 130-224 1-97 (342)
336 COG1412 Uncharacterized protei 43.9 43 0.00092 28.3 4.5 26 158-188 99-124 (136)
337 TIGR00561 pntA NAD(P) transhyd 43.9 3.8E+02 0.0081 27.5 13.1 156 56-231 97-282 (511)
338 COG0603 Predicted PP-loop supe 43.9 1.1E+02 0.0024 27.9 7.4 56 128-188 2-62 (222)
339 PRK05479 ketol-acid reductoiso 43.9 80 0.0017 30.4 6.9 45 128-183 17-63 (330)
340 COG0673 MviM Predicted dehydro 43.3 78 0.0017 29.2 6.7 77 140-224 57-136 (342)
341 cd04911 ACT_AKiii-YclM-BS_1 AC 43.2 1.2E+02 0.0026 23.0 6.4 60 50-117 12-71 (76)
342 PRK06372 translation initiatio 43.1 1.3E+02 0.0027 28.0 7.9 50 132-188 89-141 (253)
343 PRK14439 acylphosphatase; Prov 43.0 1.2E+02 0.0025 26.5 7.1 64 97-164 85-149 (163)
344 PRK11880 pyrroline-5-carboxyla 43.0 87 0.0019 28.1 6.8 15 128-142 2-17 (267)
345 PRK11890 phosphate acetyltrans 42.8 1.4E+02 0.0031 28.5 8.4 87 126-223 20-112 (312)
346 cd01713 PAPS_reductase This do 42.6 90 0.002 25.1 6.3 57 130-188 1-62 (173)
347 PRK07742 phosphate butyryltran 42.4 1.8E+02 0.0038 27.4 9.0 77 127-213 14-99 (299)
348 PRK13530 arsenate reductase; P 42.3 52 0.0011 27.0 4.8 76 128-211 3-81 (133)
349 cd00553 NAD_synthase NAD+ synt 42.2 1.8E+02 0.0038 26.3 8.7 58 128-188 23-85 (248)
350 PF02700 PurS: Phosphoribosylf 42.2 1.3E+02 0.0028 22.8 6.6 46 57-113 19-65 (80)
351 PRK09536 btuD corrinoid ABC tr 42.1 1.1E+02 0.0024 30.0 7.8 88 137-230 274-364 (402)
352 TIGR00657 asp_kinases aspartat 41.7 3.5E+02 0.0076 26.6 12.2 38 40-77 300-339 (441)
353 PRK07679 pyrroline-5-carboxyla 41.2 1.1E+02 0.0023 28.0 7.2 66 129-211 4-72 (279)
354 PRK14434 acylphosphatase; Prov 41.1 1.3E+02 0.0027 23.4 6.5 59 102-164 17-78 (92)
355 TIGR00511 ribulose_e2b2 ribose 40.8 1.8E+02 0.0039 27.5 8.7 52 132-188 118-173 (301)
356 PRK11106 queuosine biosynthesi 40.8 1.1E+02 0.0023 28.0 6.9 55 129-188 2-62 (231)
357 PF00679 EFG_C: Elongation fac 40.6 1.6E+02 0.0034 22.2 7.6 63 43-114 7-69 (89)
358 TIGR02853 spore_dpaA dipicolin 40.6 1.1E+02 0.0024 28.5 7.3 85 128-231 151-238 (287)
359 PTZ00106 60S ribosomal protein 40.6 49 0.0011 26.6 4.2 59 134-203 26-85 (108)
360 PRK08334 translation initiatio 40.4 1.4E+02 0.0031 29.1 8.1 69 137-217 176-250 (356)
361 PRK11391 etp phosphotyrosine-p 40.2 1.5E+02 0.0033 24.5 7.4 78 129-212 3-83 (144)
362 PRK07714 hypothetical protein; 40.1 52 0.0011 25.7 4.3 59 134-203 19-77 (100)
363 COG1748 LYS9 Saccharopine dehy 39.9 1.5E+02 0.0032 29.3 8.2 71 128-211 1-75 (389)
364 PRK12491 pyrroline-5-carboxyla 39.8 84 0.0018 29.0 6.3 65 129-211 3-70 (272)
365 PF01488 Shikimate_DH: Shikima 39.8 40 0.00087 27.5 3.7 84 128-227 12-100 (135)
366 PF12147 Methyltransf_20: Puta 39.7 1.7E+02 0.0037 28.1 8.2 91 124-220 132-225 (311)
367 PRK10124 putative UDP-glucose 39.4 2.2E+02 0.0048 28.4 9.6 86 128-215 143-241 (463)
368 PRK13940 glutamyl-tRNA reducta 39.4 75 0.0016 31.4 6.1 67 128-212 181-250 (414)
369 TIGR00552 nadE NAD+ synthetase 39.2 2.4E+02 0.0051 25.5 9.0 57 128-188 22-84 (250)
370 PRK08535 translation initiatio 39.2 1.8E+02 0.0039 27.5 8.5 52 132-188 123-178 (310)
371 PRK06849 hypothetical protein; 39.1 2.5E+02 0.0054 26.8 9.6 75 127-210 3-82 (389)
372 PRK08462 biotin carboxylase; V 39.1 87 0.0019 30.6 6.6 77 127-214 3-85 (445)
373 COG1828 PurS Phosphoribosylfor 39.0 1.2E+02 0.0025 23.6 5.8 47 57-114 20-67 (83)
374 COG0731 Fe-S oxidoreductases [ 38.4 3.2E+02 0.0069 26.0 9.9 59 97-165 57-118 (296)
375 COG0528 PyrH Uridylate kinase 38.3 1.2E+02 0.0025 28.1 6.7 58 128-188 124-216 (238)
376 cd05015 SIS_PGI_1 Phosphogluco 38.3 64 0.0014 27.2 4.8 56 128-188 73-137 (158)
377 TIGR03573 WbuX N-acetyl sugar 38.2 2.8E+02 0.006 26.5 9.7 79 98-188 37-120 (343)
378 PRK09288 purT phosphoribosylgl 38.1 1.7E+02 0.0038 27.7 8.4 71 125-210 9-81 (395)
379 PF08898 DUF1843: Domain of un 38.0 14 0.00031 26.2 0.6 14 242-255 2-15 (53)
380 PLN02256 arogenate dehydrogena 37.7 1.4E+02 0.0031 28.0 7.6 68 126-215 34-103 (304)
381 PF01113 DapB_N: Dihydrodipico 37.6 76 0.0017 25.5 5.0 34 129-166 1-36 (124)
382 TIGR01269 Tyr_3_monoox tyrosin 37.4 1.8E+02 0.0039 29.4 8.3 65 41-108 38-106 (457)
383 COG1954 GlpP Glycerol-3-phosph 37.3 2E+02 0.0042 25.5 7.6 94 130-230 25-148 (181)
384 PRK11579 putative oxidoreducta 37.1 2E+02 0.0044 27.0 8.5 34 127-164 3-38 (346)
385 PLN02688 pyrroline-5-carboxyla 37.1 1.5E+02 0.0032 26.6 7.3 47 129-183 1-50 (266)
386 cd06278 PBP1_LacI_like_2 Ligan 37.1 2.1E+02 0.0046 24.6 8.1 71 99-188 14-84 (266)
387 cd02001 TPP_ComE_PpyrDC Thiami 36.6 1E+02 0.0023 25.9 5.9 77 130-209 60-151 (157)
388 COG2085 Predicted dinucleotide 36.5 1.3E+02 0.0029 27.2 6.8 90 128-235 1-95 (211)
389 PF01297 TroA: Periplasmic sol 36.3 69 0.0015 28.7 5.0 44 140-188 186-229 (256)
390 COG1099 Predicted metal-depend 36.2 54 0.0012 30.3 4.2 109 97-210 39-162 (254)
391 PRK04148 hypothetical protein; 35.7 2.6E+02 0.0057 23.4 9.6 51 127-188 16-66 (134)
392 PLN00200 argininosuccinate syn 35.6 1.5E+02 0.0032 29.5 7.5 57 128-188 5-66 (404)
393 PRK05783 hypothetical protein; 35.4 2.1E+02 0.0045 22.1 7.1 60 43-113 3-67 (84)
394 PLN02712 arogenate dehydrogena 35.4 1.2E+02 0.0027 31.8 7.3 48 125-184 49-97 (667)
395 cd02004 TPP_BZL_OCoD_HPCL Thia 35.3 2.2E+02 0.0047 23.8 7.7 56 130-188 67-146 (172)
396 PRK00048 dihydrodipicolinate r 35.3 1.3E+02 0.0029 27.3 6.8 56 156-214 61-118 (257)
397 COG0303 MoeA Molybdopterin bio 35.2 1.1E+02 0.0023 30.4 6.4 100 102-222 155-260 (404)
398 PF04007 DUF354: Protein of un 34.9 3.5E+02 0.0076 26.0 9.8 76 130-212 2-91 (335)
399 TIGR03022 WbaP_sugtrans Undeca 34.8 3.4E+02 0.0074 26.6 10.0 36 128-165 125-161 (456)
400 TIGR03023 WcaJ_sugtrans Undeca 34.7 2.9E+02 0.0063 27.0 9.5 88 128-217 128-231 (451)
401 PF01262 AlaDh_PNT_C: Alanine 34.6 1.7E+02 0.0037 24.6 6.9 89 127-226 19-130 (168)
402 PRK13789 phosphoribosylamine-- 34.6 83 0.0018 31.1 5.6 23 127-151 3-25 (426)
403 COG0075 Serine-pyruvate aminot 34.5 3.6E+02 0.0077 26.6 9.9 75 131-210 57-137 (383)
404 PRK10867 signal recognition pa 34.4 4.8E+02 0.01 26.0 12.4 127 54-188 29-163 (433)
405 TIGR00524 eIF-2B_rel eIF-2B al 34.4 2.1E+02 0.0046 27.1 8.1 63 139-210 137-203 (303)
406 PRK05948 precorrin-2 methyltra 34.3 3.6E+02 0.0078 24.5 9.6 100 97-212 69-178 (238)
407 COG0527 LysC Aspartokinases [A 34.2 2E+02 0.0043 28.9 8.2 35 41-75 382-419 (447)
408 COG1927 Mtd Coenzyme F420-depe 34.0 2.2E+02 0.0047 26.2 7.6 48 140-188 46-94 (277)
409 TIGR01921 DAP-DH diaminopimela 33.8 1E+02 0.0022 29.6 5.9 34 128-165 3-37 (324)
410 PLN02591 tryptophan synthase 33.7 1.7E+02 0.0036 27.0 7.1 188 53-265 15-222 (250)
411 cd03466 Nitrogenase_NifN_2 Nit 33.6 4.7E+02 0.01 25.7 11.2 95 44-187 302-396 (429)
412 PRK08335 translation initiatio 33.4 2.5E+02 0.0054 26.3 8.3 67 133-210 113-183 (275)
413 TIGR00465 ilvC ketol-acid redu 33.4 1.4E+02 0.0031 28.3 6.8 10 129-138 4-13 (314)
414 cd00568 TPP_enzymes Thiamine p 33.3 1.6E+02 0.0034 24.0 6.4 57 129-188 64-143 (168)
415 PRK07680 late competence prote 33.2 1.4E+02 0.003 27.1 6.6 14 129-142 1-15 (273)
416 PF04309 G3P_antiterm: Glycero 33.0 99 0.0021 27.1 5.2 120 127-261 18-169 (175)
417 TIGR02706 P_butyryltrans phosp 32.9 2.9E+02 0.0063 25.8 8.8 77 127-212 12-95 (294)
418 COG0373 HemA Glutamyl-tRNA red 32.7 1.7E+02 0.0037 29.2 7.4 79 128-224 178-260 (414)
419 COG0499 SAM1 S-adenosylhomocys 32.7 1.2E+02 0.0026 30.1 6.1 56 155-210 69-126 (420)
420 PF02540 NAD_synthase: NAD syn 32.6 2.2E+02 0.0047 25.9 7.7 58 129-188 19-80 (242)
421 PRK00094 gpsA NAD(P)H-dependen 32.4 1.2E+02 0.0026 27.8 6.1 20 128-147 1-21 (325)
422 PRK12571 1-deoxy-D-xylulose-5- 31.9 64 0.0014 33.7 4.5 92 138-231 254-365 (641)
423 cd05213 NAD_bind_Glutamyl_tRNA 31.8 1.4E+02 0.0029 28.1 6.4 34 36-69 44-78 (311)
424 COG1879 RbsB ABC-type sugar tr 31.8 2.3E+02 0.005 25.9 7.9 73 99-188 48-123 (322)
425 COG2921 Uncharacterized conser 31.6 2.5E+02 0.0053 22.1 6.6 67 41-111 14-82 (90)
426 smart00851 MGS MGS-like domain 31.5 1.1E+02 0.0023 23.1 4.7 38 144-185 46-89 (90)
427 PRK09466 metL bifunctional asp 31.5 2E+02 0.0043 31.2 8.2 36 42-77 317-355 (810)
428 PF00208 ELFV_dehydrog: Glutam 31.5 2E+02 0.0042 26.3 7.2 114 102-231 14-144 (244)
429 PF06508 QueC: Queuosine biosy 31.3 1.9E+02 0.0041 25.7 6.9 55 130-188 1-60 (209)
430 PRK10017 colanic acid biosynth 31.3 1.4E+02 0.003 29.6 6.6 38 129-167 1-44 (426)
431 cd06296 PBP1_CatR_like Ligand- 31.2 2.5E+02 0.0054 24.3 7.7 71 99-188 14-85 (270)
432 PRK04527 argininosuccinate syn 30.9 1.6E+02 0.0035 29.2 6.9 56 128-188 2-63 (400)
433 cd00887 MoeA MoeA family. Memb 30.6 1.4E+02 0.003 29.1 6.4 75 127-216 167-246 (394)
434 TIGR03025 EPS_sugtrans exopoly 30.1 3.6E+02 0.0079 26.3 9.3 37 128-166 125-162 (445)
435 COG1606 ATP-utilizing enzymes 30.1 1.8E+02 0.0039 27.3 6.6 58 128-188 17-78 (269)
436 PRK00509 argininosuccinate syn 29.9 2E+02 0.0043 28.5 7.3 57 128-188 2-62 (399)
437 cd01017 AdcA Metal binding pro 29.9 1.4E+02 0.0031 27.4 6.0 16 173-188 212-227 (282)
438 PRK07027 cobalamin biosynthesi 29.8 1.3E+02 0.0027 24.7 5.1 32 156-188 35-67 (126)
439 COG0313 Predicted methyltransf 29.8 2.7E+02 0.0059 26.3 7.8 51 134-188 55-113 (275)
440 PF02441 Flavoprotein: Flavopr 29.5 83 0.0018 25.4 4.0 90 129-231 1-96 (129)
441 cd03372 TPP_ComE Thiamine pyro 29.5 3.6E+02 0.0078 23.0 8.3 57 130-188 60-130 (179)
442 TIGR03499 FlhF flagellar biosy 29.4 4.6E+02 0.0099 24.2 11.3 73 130-210 195-278 (282)
443 PF12017 Tnp_P_element: Transp 29.4 4.3E+02 0.0094 24.2 9.0 39 139-183 195-233 (236)
444 PRK08618 ornithine cyclodeamin 29.3 1.5E+02 0.0032 28.0 6.2 69 128-213 127-201 (325)
445 PRK00045 hemA glutamyl-tRNA re 29.2 1.3E+02 0.0029 29.5 6.0 80 128-224 182-264 (423)
446 PRK05583 ribosomal protein L7A 29.0 2.7E+02 0.0058 22.1 6.7 76 134-224 18-93 (104)
447 COG0245 IspF 2C-methyl-D-eryth 28.9 1.7E+02 0.0038 25.3 5.9 79 46-139 67-145 (159)
448 PRK06141 ornithine cyclodeamin 28.8 2.6E+02 0.0057 26.2 7.8 85 128-231 125-216 (314)
449 PRK07283 hypothetical protein; 28.7 1E+02 0.0023 24.0 4.3 75 134-224 19-93 (98)
450 PRK08306 dipicolinate synthase 28.7 2.7E+02 0.0059 25.9 7.8 79 128-225 152-231 (296)
451 PLN02347 GMP synthetase 28.6 2.1E+02 0.0046 29.4 7.5 57 128-188 229-291 (536)
452 PF01250 Ribosomal_S6: Ribosom 28.6 1.8E+02 0.0038 22.0 5.5 53 52-107 18-79 (92)
453 PRK04175 rpl7ae 50S ribosomal 28.5 2.5E+02 0.0053 22.9 6.6 58 134-203 31-90 (122)
454 TIGR01088 aroQ 3-dehydroquinat 28.4 2.6E+02 0.0057 23.8 6.8 70 96-188 23-98 (141)
455 PF13407 Peripla_BP_4: Peripla 28.4 3.1E+02 0.0068 23.6 7.8 75 99-190 13-89 (257)
456 TIGR03590 PseG pseudaminic aci 28.3 3.9E+02 0.0086 24.4 8.7 76 129-212 171-249 (279)
457 cd06353 PBP1_BmpA_Med_like Per 28.3 89 0.0019 28.3 4.4 53 174-226 24-80 (258)
458 PF02639 DUF188: Uncharacteriz 28.1 91 0.002 25.9 4.0 34 181-214 28-61 (130)
459 COG3033 TnaA Tryptophanase [Am 28.1 1.2E+02 0.0025 30.3 5.2 35 41-75 10-44 (471)
460 PF04592 SelP_N: Selenoprotein 28.0 2.1E+02 0.0047 26.4 6.7 57 156-217 61-123 (238)
461 TIGR00936 ahcY adenosylhomocys 28.0 1.7E+02 0.0037 29.0 6.5 57 155-212 56-114 (406)
462 TIGR00032 argG argininosuccina 27.9 1.3E+02 0.0028 29.7 5.6 54 130-188 1-59 (394)
463 PRK08291 ectoine utilization p 27.6 1.3E+02 0.0028 28.5 5.5 90 98-212 110-205 (330)
464 cd01987 USP_OKCHK USP domain i 27.6 2.8E+02 0.0061 21.2 8.6 41 173-215 54-96 (124)
465 PRK14690 molybdopterin biosynt 27.6 1.3E+02 0.0029 29.7 5.7 73 127-216 192-271 (419)
466 PRK06552 keto-hydroxyglutarate 27.5 4.3E+02 0.0094 23.6 8.6 135 45-227 16-151 (213)
467 PRK00876 nadE NAD synthetase; 27.5 4.4E+02 0.0096 25.3 9.1 57 130-188 35-95 (326)
468 PF06877 RraB: Regulator of ri 27.4 1.6E+02 0.0035 22.6 5.2 76 41-117 24-99 (104)
469 COG1184 GCD2 Translation initi 27.4 4E+02 0.0088 25.4 8.6 52 133-188 123-177 (301)
470 PRK07502 cyclohexadienyl dehyd 27.3 2.5E+02 0.0054 25.9 7.3 46 129-183 7-53 (307)
471 PRK05772 translation initiatio 27.3 3.2E+02 0.0069 26.8 8.1 48 136-188 183-234 (363)
472 PF01248 Ribosomal_L7Ae: Ribos 27.3 82 0.0018 23.9 3.4 51 144-203 22-75 (95)
473 PRK06928 pyrroline-5-carboxyla 27.2 3.3E+02 0.0072 24.9 8.0 15 128-142 1-16 (277)
474 cd01018 ZntC Metal binding pro 27.0 1.7E+02 0.0038 26.6 6.1 16 173-188 209-224 (266)
475 COG4080 SpoU rRNA Methylase fa 27.0 1.1E+02 0.0024 26.1 4.3 32 173-212 48-81 (147)
476 PF13727 CoA_binding_3: CoA-bi 27.0 3.3E+02 0.0071 22.0 7.3 37 152-188 100-148 (175)
477 PRK06407 ornithine cyclodeamin 26.9 1.3E+02 0.0028 28.3 5.3 123 78-231 82-209 (301)
478 PRK00074 guaA GMP synthase; Re 26.8 2.1E+02 0.0045 29.1 7.1 57 128-188 215-277 (511)
479 KOG0081 GTPase Rab27, small G 26.6 1.4E+02 0.0031 26.3 5.0 31 157-188 126-162 (219)
480 PF01784 NIF3: NIF3 (NGG1p int 26.6 2.9E+02 0.0063 24.9 7.4 117 54-188 75-219 (241)
481 PF01008 IF-2B: Initiation fac 26.5 1.7E+02 0.0037 26.7 5.9 70 131-211 109-183 (282)
482 cd05565 PTS_IIB_lactose PTS_II 26.4 1.1E+02 0.0025 24.1 4.1 49 173-225 20-68 (99)
483 COG1921 SelA Selenocysteine sy 26.4 3.2E+02 0.0069 27.2 8.0 56 157-212 159-221 (395)
484 PRK06270 homoserine dehydrogen 26.4 3.7E+02 0.0081 25.5 8.4 36 128-163 2-43 (341)
485 COG2266 GTP:adenosylcobinamide 26.3 4.6E+02 0.0099 23.2 9.1 78 156-239 42-126 (177)
486 cd06283 PBP1_RegR_EndR_KdgR_li 26.2 4.2E+02 0.009 22.7 8.2 71 99-188 14-85 (267)
487 PRK06476 pyrroline-5-carboxyla 26.2 2.2E+02 0.0048 25.5 6.6 67 129-213 1-70 (258)
488 TIGR02128 G6PI_arch bifunction 26.0 1.3E+02 0.0027 28.5 5.1 52 129-188 67-120 (308)
489 PF02844 GARS_N: Phosphoribosy 25.9 2.8E+02 0.0061 22.0 6.3 33 129-164 1-34 (100)
490 PRK01215 competence damage-ind 25.8 2.1E+02 0.0046 26.5 6.4 11 128-138 3-13 (264)
491 PF02092 tRNA_synt_2f: Glycyl- 25.7 2.1E+02 0.0045 29.6 6.8 116 35-166 55-180 (548)
492 smart00226 LMWPc Low molecular 25.7 2E+02 0.0042 23.2 5.6 77 142-226 15-91 (140)
493 PRK09424 pntA NAD(P) transhydr 25.6 7.4E+02 0.016 25.3 13.5 162 43-226 88-276 (509)
494 PRK14618 NAD(P)H-dependent gly 25.5 2.9E+02 0.0062 25.8 7.4 20 128-147 4-24 (328)
495 PRK10799 metal-binding protein 25.4 5.1E+02 0.011 23.4 13.8 120 53-189 76-215 (247)
496 cd00758 MoCF_BD MoCF_BD: molyb 25.4 1.5E+02 0.0032 24.1 4.8 48 172-220 23-74 (133)
497 TIGR00518 alaDH alanine dehydr 25.4 4.7E+02 0.01 25.2 9.0 91 127-231 166-265 (370)
498 KOG1201 Hydroxysteroid 17-beta 25.4 4.5E+02 0.0098 25.1 8.5 72 132-210 40-120 (300)
499 cd03376 TPP_PFOR_porB_like Thi 25.4 5E+02 0.011 23.3 8.9 34 129-165 80-117 (235)
500 COG2403 Predicted GTPase [Gene 25.3 2.2E+02 0.0047 28.4 6.5 77 125-211 3-89 (449)
No 1
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.6e-54 Score=391.81 Aligned_cols=207 Identities=35% Similarity=0.503 Sum_probs=190.8
Q ss_pred CCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhccc
Q 023530 37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (281)
Q Consensus 37 ~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~ 116 (281)
+..++.++||+.|||++|||++||++|+++||||++.+|+.++.+|+||||+++.......+.++|+++|..++++|+|+
T Consensus 2 ~~~~~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~a~~f~m~ 81 (287)
T COG0788 2 SNEPDTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGPLDREALRAAFAPLAEEFGMD 81 (287)
T ss_pred CCCccceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCCcccHHHHHHHHHHHHHhhCce
Confidence 44557899999999999999999999999999999999998888999999999998875588999999999999999987
Q ss_pred ceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC-CCCCCh-
Q 023530 117 RSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENER- 194 (281)
Q Consensus 117 ~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~-~k~~~~- 194 (281)
|++.+++.++||+||+|+.+|||.+||.+|+.|+|+++|++|||||+| ....|+.+|||++++| ++.++.
T Consensus 82 ---~~~~~~~~~~ri~i~VSK~~HCL~DLL~r~~~g~L~~eI~~VIsNH~d-----l~~~v~~~~IPfhhip~~~~~k~e 153 (287)
T COG0788 82 ---WRLHDAAQRKRIAILVSKEDHCLGDLLYRWRIGELPAEIVAVISNHDD-----LRPLVERFDIPFHHIPVTKENKAE 153 (287)
T ss_pred ---eEEeccccCceEEEEEechHHHHHHHHHHHhcCCcCCceEEEEcCCHH-----HHHHHHHcCCCeeeccCCCCcchH
Confidence 677889999999999999999999999999999999999999999975 4789999999999999 776554
Q ss_pred -HHHHHHHHh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcC
Q 023530 195 -EEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTD 255 (281)
Q Consensus 195 -e~~l~~~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d 255 (281)
|++++++++ ++|+||||+|||||||+||++|+|+||| |+||+|.|| .|-|+|-..|.
T Consensus 154 ~E~~~~~ll~~~~~DlvVLARYMqILS~d~~~~~~g~iINIHHSFLPaF~GA----~PY~QA~eRGV 216 (287)
T COG0788 154 AEARLLELLEEYGADLVVLARYMQILSPDFVERFPGKIINIHHSFLPAFIGA----NPYHQAYERGV 216 (287)
T ss_pred HHHHHHHHHHHhCCCEEeehhhHhhCCHHHHHhccCcEEEecccccccCCCC----ChHHHHHhcCC
Confidence 577999998 8999999999999999999999999999 999999998 78888876553
No 2
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=100.00 E-value=6.5e-53 Score=390.48 Aligned_cols=207 Identities=32% Similarity=0.519 Sum_probs=186.5
Q ss_pred EEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH-Hhhhhcccceeee
Q 023530 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK-LSKMFNAMRSVVR 121 (281)
Q Consensus 43 ~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~-la~~l~l~~~~~~ 121 (281)
++||++|||||||||+||++|+++|+||+|++|+++..+|.|+||++++.|+...+.++|+++|++ ++++++|+ |+
T Consensus 1 ~~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~~~~~~~~l~---i~ 77 (280)
T TIGR00655 1 GILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKSALAEKFEMT---WE 77 (280)
T ss_pred CEEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhCCE---EE
Confidence 479999999999999999999999999999999998778999999999998644789999999999 99999997 56
Q ss_pred ecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCC-CCCC--hHHHH
Q 023530 122 VPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA-KENE--REEEL 198 (281)
Q Consensus 122 ~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~-k~~~--~e~~l 198 (281)
+.+.++++|||||+||+||||++|+++++.|+++++|++||||| +++. .+|+++|||+++++. +.++ .|+++
T Consensus 78 l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~visn~---~~~~--~~A~~~gIp~~~~~~~~~~~~~~e~~~ 152 (280)
T TIGR00655 78 LILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVISNH---EDLR--SLVERFGIPFHYIPATKDNRVEHEKRQ 152 (280)
T ss_pred EecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEEcC---hhHH--HHHHHhCCCEEEcCCCCcchhhhHHHH
Confidence 78888999999999999999999999999999999999999999 4554 469999999999984 2222 35678
Q ss_pred HHHHh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcC--CCccee
Q 023530 199 LELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTD--KGCLCS 261 (281)
Q Consensus 199 ~~~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d--~g~~~~ 261 (281)
.+.|+ ++|+||||||||||+++|++.|++|||| ||||+|||+ .+++||+.+|+ +|||+-
T Consensus 153 ~~~l~~~~~Dlivlagym~il~~~~l~~~~~~iINiHpSLLP~f~G~----~p~~~ai~~G~k~tG~TvH 218 (280)
T TIGR00655 153 LELLKQYQVDLVVLAKYMQILSPDFVKRYPNKIINIHHSFLPAFIGA----NPYQRAYERGVKIIGATAH 218 (280)
T ss_pred HHHHHHhCCCEEEEeCchhhCCHHHHhhccCCEEEecCCcCCCCCCc----CHHHHHHHcCCCeEEEEEE
Confidence 88887 8999999999999999999999999999 999999996 78999998886 566653
No 3
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=100.00 E-value=3.4e-52 Score=387.17 Aligned_cols=208 Identities=25% Similarity=0.424 Sum_probs=186.0
Q ss_pred cccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEE--eCCCCCCHHHHHHHHHHHhhhhcccc
Q 023530 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI--FDPIKWPREQMDEDFFKLSKMFNAMR 117 (281)
Q Consensus 40 ~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~--~p~~~~~~~~L~~~L~~la~~l~l~~ 117 (281)
+.+++|||.|+|||||||+||++|+++|+||+|++|+++...+.||||+++. .|. ..+.++|+++|++++++++++
T Consensus 7 m~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~-~~~~~~l~~~l~~l~~~l~l~- 84 (289)
T PRK13010 7 SPSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAE-AASVDTFRQEFQPVAEKFDMQ- 84 (289)
T ss_pred ccCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCC-CCCHHHHHHHHHHHHHHhCCe-
Confidence 4679999999999999999999999999999999999766678999999988 445 678999999999999999998
Q ss_pred eeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCC-C--Ch
Q 023530 118 SVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-N--ER 194 (281)
Q Consensus 118 ~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~-~--~~ 194 (281)
|++.+.++++|||||+||+||||++|++++++|+++++|++||||| +++ .++|+++|||+++++.+. + ..
T Consensus 85 --~~i~~~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~visn~---~~~--~~~A~~~gIp~~~~~~~~~~~~~~ 157 (289)
T PRK13010 85 --WAIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIISNH---PDL--QPLAVQHDIPFHHLPVTPDTKAQQ 157 (289)
T ss_pred --EEEecCCCCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEEEECC---hhH--HHHHHHcCCCEEEeCCCcccccch
Confidence 5567788889999999999999999999999999999999999999 444 699999999999998332 2 23
Q ss_pred HHHHHHHHh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcC--CCcce
Q 023530 195 EEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTD--KGCLC 260 (281)
Q Consensus 195 e~~l~~~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d--~g~~~ 260 (281)
|.++.+.|+ ++|+||||||||||+++|++.|++|||| ||||+|||+ .+++||+.+|+ +|||+
T Consensus 158 ~~~~~~~l~~~~~Dlivlagym~il~~~~l~~~~~~iiNiHpSlLP~f~G~----~~~~~ai~~G~k~tG~Tv 226 (289)
T PRK13010 158 EAQILDLIETSGAELVVLARYMQVLSDDLSRKLSGRAINIHHSFLPGFKGA----RPYHQAHARGVKLIGATA 226 (289)
T ss_pred HHHHHHHHHHhCCCEEEEehhhhhCCHHHHhhccCCceeeCcccCCCCCCC----CHHHHHHHcCCCeEEEEE
Confidence 567888888 8999999999999999999999999999 999999997 78889998886 45554
No 4
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=100.00 E-value=9.2e-51 Score=377.18 Aligned_cols=212 Identities=26% Similarity=0.429 Sum_probs=188.6
Q ss_pred CCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhccc
Q 023530 37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (281)
Q Consensus 37 ~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~ 116 (281)
+.-++++++||+|+||||||++||++|+++|+||+|++|+++.+.++|+|++++++|+ +.+.++|+++|+++|++++++
T Consensus 2 ~~~m~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~-~~~~~~L~~~L~~l~~~l~l~ 80 (286)
T PRK13011 2 SRRPDTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEE-GLDEDALRAGFAPIAARFGMQ 80 (286)
T ss_pred CCCCceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCC-CCCHHHHHHHHHHHHHHhCcE
Confidence 3345689999999999999999999999999999999999877889999999999997 788999999999999999998
Q ss_pred ceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCC---
Q 023530 117 RSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENE--- 193 (281)
Q Consensus 117 ~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~--- 193 (281)
|++.+..+++|||||+||+|+||++|+++++.|+++++|++||||+ +++. .+|+++|||+++++.+..+
T Consensus 81 ---i~i~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~visn~---~~~~--~lA~~~gIp~~~~~~~~~~~~~ 152 (286)
T PRK13011 81 ---WELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVSNH---PDLE--PLAAWHGIPFHHFPITPDTKPQ 152 (286)
T ss_pred ---EEEeecccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEECC---ccHH--HHHHHhCCCEEEeCCCcCchhh
Confidence 4567777889999999999999999999999999999999999999 4444 4599999999998732222
Q ss_pred hHHHHHHHHh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcC--CCccee
Q 023530 194 REEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTD--KGCLCS 261 (281)
Q Consensus 194 ~e~~l~~~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d--~g~~~~ 261 (281)
+|.++.+.|+ ++|+||||||||||+++|++.|+++||| ||||+|||+ .+++||+.+|+ +|||+-
T Consensus 153 ~~~~~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~~iiNiHpSLLP~~rG~----~~~~~ai~~G~~~tG~TvH 223 (286)
T PRK13011 153 QEAQVLDVVEESGAELVVLARYMQVLSPELCRKLAGRAINIHHSFLPGFKGA----KPYHQAYERGVKLIGATAH 223 (286)
T ss_pred hHHHHHHHHHHhCcCEEEEeChhhhCCHHHHhhccCCeEEeccccCCCCCCC----cHHHHHHHCCCCeEEEEEE
Confidence 3556788887 8999999999999999999999999999 999999997 89999999987 466553
No 5
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=100.00 E-value=7.9e-50 Score=370.97 Aligned_cols=208 Identities=35% Similarity=0.538 Sum_probs=186.0
Q ss_pred ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEe-CCCCCCHHHHHHHHHHHhhhhccccee
Q 023530 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIF-DPIKWPREQMDEDFFKLSKMFNAMRSV 119 (281)
Q Consensus 41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~-p~~~~~~~~L~~~L~~la~~l~l~~~~ 119 (281)
+++++|++|+||||||++||++|+++||||+|++|++.+.+|.|+|++++++ |. +.+.++|+++|++++++++++
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~-~~~~~~L~~~L~~l~~~l~l~--- 80 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGL-IFNLETLRADFAALAEEFEMD--- 80 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCC-CCCHHHHHHHHHHHHHHhCCE---
Confidence 5799999999999999999999999999999999998556889999999999 44 567999999999999999998
Q ss_pred eeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCC-CC--ChHH
Q 023530 120 VRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-EN--EREE 196 (281)
Q Consensus 120 ~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k-~~--~~e~ 196 (281)
+.+.+..+++|||||+||+||||++|++++++|+++++|++|+||+ ++++ .+|+++|||+++++.+ .+ ++|.
T Consensus 81 i~l~~~~~~~ri~vl~Sg~gsnl~al~~~~~~~~~~~~i~~visn~---~~~~--~lA~~~gIp~~~~~~~~~~~~~~~~ 155 (286)
T PRK06027 81 WRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNH---DDLR--SLVERFGIPFHHVPVTKETKAEAEA 155 (286)
T ss_pred EEEcccccCcEEEEEEcCCCCCHHHHHHHHHcCCCCcEEEEEEEcC---hhHH--HHHHHhCCCEEEeccCccccchhHH
Confidence 5678888999999999999999999999999999999999999998 4454 4599999999998843 22 2456
Q ss_pred HHHHHHh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcC--CCccee
Q 023530 197 ELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTD--KGCLCS 261 (281)
Q Consensus 197 ~l~~~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d--~g~~~~ 261 (281)
++.+.|+ ++|+||||||||||+++|++.|++|||| ||||+|||+ .+++||+.+|+ +|||+-
T Consensus 156 ~~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~~iiNiHpSLLP~yrG~----~~~~~ai~~G~~~tG~TiH 223 (286)
T PRK06027 156 RLLELIDEYQPDLVVLARYMQILSPDFVARFPGRIINIHHSFLPAFKGA----KPYHQAYERGVKLIGATAH 223 (286)
T ss_pred HHHHHHHHhCCCEEEEecchhhcCHHHHhhccCCceecCcccCCCCCCC----CHHHHHHHCCCCeEEEEEE
Confidence 7888888 8999999999999999999999999999 999999997 78999999987 466553
No 6
>PLN02828 formyltetrahydrofolate deformylase
Probab=100.00 E-value=3.3e-49 Score=362.95 Aligned_cols=199 Identities=64% Similarity=1.046 Sum_probs=180.8
Q ss_pred HHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCC
Q 023530 59 LSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQ 138 (281)
Q Consensus 59 VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~ 138 (281)
||++|+++|+||++++|++++.+|+||||++++.+....+.++|+++|.+++++++|+||+|++.++++++|||||+||+
T Consensus 1 ~~~~~~~~~~ni~~~~~~~d~~~~~ff~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riavlvSg~ 80 (268)
T PLN02828 1 LSDCIASRGGNILGVDVFVPENKNVFYSRSEFIFDPVKWPRAQMDEDFQEISKHFKALKSVVRVPGLDPKYKIAVLASKQ 80 (268)
T ss_pred CcHHHHhCCCCEeEcccccCCCCCeeEEEEEEEeCCCCCCHHHHHHHHHHHHHhcCCcceEEEEccCCCCcEEEEEEcCC
Confidence 58999999999999999999999999999999976434678999999999999999998889999999999999999999
Q ss_pred hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC-CCCCChHHHHHHHHhCCCEEEEecccccC
Q 023530 139 EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENEREEELLELVQNTDFLVLARYMQPV 217 (281)
Q Consensus 139 GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~-~k~~~~e~~l~~~L~~~DlIVLAgYMrIL 217 (281)
||||++|++++++|+++++|++|||||++.++++++++|+++|||+++++ .+.++.|+++.+.++++|+||||||||||
T Consensus 81 g~nl~~ll~~~~~g~l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~~~~~~~e~~~~~~l~~~DliVLAgym~IL 160 (268)
T PLN02828 81 DHCLIDLLHRWQDGRLPVDITCVISNHERGPNTHVMRFLERHGIPYHYLPTTKENKREDEILELVKGTDFLVLARYMQIL 160 (268)
T ss_pred ChhHHHHHHhhhcCCCCceEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCCCCCCCHHHHHHHHHhcCCEEEEeeehHhC
Confidence 99999999999999999999999999865456789999999999999988 33344566788888899999999999999
Q ss_pred ChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCC--Cccee
Q 023530 218 PLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDK--GCLCS 261 (281)
Q Consensus 218 s~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~--g~~~~ 261 (281)
|++|++.|++|||| ||||+|+|+ .|+|||+..|++ |||+-
T Consensus 161 ~~~~l~~~~~riINIHpSlLP~f~Ga----~p~~~Ai~~Gvk~tG~TvH 205 (268)
T PLN02828 161 SGNFLKGYGKDIINIHHGLLPSFKGG----NPSKQAFDAGVKLIGATSH 205 (268)
T ss_pred CHHHHhhccCCEEEecCccCCCCCCC----cHHHHHHHcCCCeEEEEEE
Confidence 99999999999999 999999997 899999999874 66653
No 7
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=100.00 E-value=6.2e-35 Score=255.09 Aligned_cols=125 Identities=28% Similarity=0.341 Sum_probs=113.3
Q ss_pred eeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCC-C---hHHHHHHHHh-
Q 023530 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN-E---REEELLELVQ- 203 (281)
Q Consensus 129 ~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~-~---~e~~l~~~L~- 203 (281)
+||+||+||+|||||+|+++++.|.++++|++||||+ ++|+++++|+++|||++++++|.. + +|+++.+.|+
T Consensus 1 ~ki~VlaSG~GSNlqaiida~~~~~~~a~i~~Visd~---~~A~~lerA~~~gIpt~~~~~k~~~~r~~~d~~l~~~l~~ 77 (200)
T COG0299 1 KKIAVLASGNGSNLQAIIDAIKGGKLDAEIVAVISDK---ADAYALERAAKAGIPTVVLDRKEFPSREAFDRALVEALDE 77 (200)
T ss_pred CeEEEEEeCCcccHHHHHHHHhcCCCCcEEEEEEeCC---CCCHHHHHHHHcCCCEEEeccccCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999999999999 789999999999999999985542 2 4678999998
Q ss_pred -CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHh-cC--CCccee
Q 023530 204 -NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMIL-TD--KGCLCS 261 (281)
Q Consensus 204 -~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~-~d--~g~~~~ 261 (281)
++|+||||||||||++.|+++|++|||| ||||+|+| .++|+++++ |+ +|||+-
T Consensus 78 ~~~dlvvLAGyMrIL~~~fl~~~~grIlNIHPSLLP~f~G-----~h~~~~A~~aG~k~sG~TVH 137 (200)
T COG0299 78 YGPDLVVLAGYMRILGPEFLSRFEGRILNIHPSLLPAFPG-----LHAHEQALEAGVKVSGCTVH 137 (200)
T ss_pred cCCCEEEEcchHHHcCHHHHHHhhcceEecCcccccCCCC-----chHHHHHHHcCCCccCcEEE
Confidence 8999999999999999999999999999 99999999 899998885 54 677653
No 8
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=99.98 E-value=8.3e-32 Score=239.82 Aligned_cols=128 Identities=20% Similarity=0.333 Sum_probs=114.8
Q ss_pred eEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCC----ChHHHHHHHHh--
Q 023530 130 KVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN----EREEELLELVQ-- 203 (281)
Q Consensus 130 rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~----~~e~~l~~~L~-- 203 (281)
||+||+||+||||++|++++++|+++++|++||||+ ++|+++++|+++|||+++++.+.. ..++++.+.|+
T Consensus 1 ki~vl~Sg~Gsn~~al~~~~~~~~l~~~i~~visn~---~~~~~~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~ 77 (207)
T PLN02331 1 KLAVFVSGGGSNFRAIHDACLDGRVNGDVVVVVTNK---PGCGGAEYARENGIPVLVYPKTKGEPDGLSPDELVDALRGA 77 (207)
T ss_pred CEEEEEeCCChhHHHHHHHHHcCCCCeEEEEEEEeC---CCChHHHHHHHhCCCEEEeccccCCCcccchHHHHHHHHhc
Confidence 699999999999999999999999999999999999 789999999999999999874321 12567888887
Q ss_pred CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHH-hcC--CCcce
Q 023530 204 NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMI-LTD--KGCLC 260 (281)
Q Consensus 204 ~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l-~~d--~g~~~ 260 (281)
++|+||+|||||||+++|++.|+++||| ||||+|||+||||+|+||+++ +|+ +|||+
T Consensus 78 ~~Dliv~agy~~il~~~~l~~~~~~~iNiHpSLLP~yrG~g~~~~~v~~a~i~~g~~~tG~Tv 140 (207)
T PLN02331 78 GVDFVLLAGYLKLIPVELVRAYPRSILNIHPALLPAFGGKGYYGIKVHKAVIASGARYSGPTV 140 (207)
T ss_pred CCCEEEEeCcchhCCHHHHhhCCCCEEEEeCccccCCCCCCcccchHHHHHHHcCCCeEEEEE
Confidence 8999999999999999999999999999 999999999999999999988 575 44444
No 9
>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=2.1e-29 Score=218.30 Aligned_cols=127 Identities=24% Similarity=0.284 Sum_probs=109.2
Q ss_pred CCCeeEEEEeeCChhHHHHHHHhhhcCCC--CeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCC-C---ChHHHHH
Q 023530 126 DPKYKVAVLASKQEHCLVDFLYGWQEGKL--PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-N---EREEELL 199 (281)
Q Consensus 126 ~~~~rIavl~Sg~GsnL~aLl~~~~~g~l--~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~-~---~~e~~l~ 199 (281)
.++.|++||+||.|+||++|+++.+.|.+ +++|+.||||+ .+++++++|+++|||+.++|++. . +++.++.
T Consensus 4 ~~r~rvavliSGtGsNlqaLid~~r~~~l~~~a~VvlviSnk---~~~~GL~rA~~~gIPt~vip~k~~a~R~~~d~eL~ 80 (206)
T KOG3076|consen 4 WRRARVAVLISGTGSNLQALIDATRDGSLGPNADVVLVISNK---KGVYGLERAADAGIPTLVIPHKRFASREKYDNELA 80 (206)
T ss_pred ccceeEEEEEecCchhHHHHHHhhcCCCcCCCceEEEEEecc---ccchhhhHHHHCCCCEEEeccccccccccCcHHHH
Confidence 45789999999999999999999999998 79999999998 78999999999999999999532 1 2356787
Q ss_pred HHHh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHh-c--CCCcce
Q 023530 200 ELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMIL-T--DKGCLC 260 (281)
Q Consensus 200 ~~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~-~--d~g~~~ 260 (281)
+.|. ++|+|||||||||||++|++.|+.+||| ||||+|+| .++|+++++ | -+||++
T Consensus 81 ~~l~e~~~d~v~lAG~M~iLs~~fl~~~~~~iiNIHPaLlpaFkG-----~~a~k~Aleagv~~~Gctv 144 (206)
T KOG3076|consen 81 EVLLELGTDLVCLAGYMRILSGEFLSQLPKRIINIHPALLPAFKG-----LHAIKQALEAGVKLSGCTV 144 (206)
T ss_pred HHHHHhCCCEEEehhhHHHcCHHHHhhcccceEecccccccccCC-----chHHHHHHHhccccccceE
Confidence 7776 9999999999999999999999999999 99999999 456666554 2 255554
No 10
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=99.95 E-value=6e-27 Score=206.09 Aligned_cols=121 Identities=23% Similarity=0.286 Sum_probs=109.7
Q ss_pred eeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCC-CC---ChHHHHHHHHh-
Q 023530 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-EN---EREEELLELVQ- 203 (281)
Q Consensus 129 ~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k-~~---~~e~~l~~~L~- 203 (281)
+|||||+||+|||++++++++.++.++++|++||+|+ ++|++.++|+++|||+++++.+ .. .+|+++.+.|+
T Consensus 1 ~riail~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~---~~~~~~~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (190)
T TIGR00639 1 KRIVVLISGNGSNLQAIIDACKEGKIPASVVLVISNK---PDAYGLERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRA 77 (190)
T ss_pred CeEEEEEcCCChhHHHHHHHHHcCCCCceEEEEEECC---ccchHHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHh
Confidence 5899999999999999999999999999999999998 6789999999999999987732 21 23567888887
Q ss_pred -CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCC
Q 023530 204 -NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDK 256 (281)
Q Consensus 204 -~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~ 256 (281)
++|++|++|||+||+++|++.|++++|| ||||+|||+ .|++||+.+|++
T Consensus 78 ~~~D~iv~~~~~~il~~~~l~~~~~~~iNiHpslLP~yrG~----~p~~~ai~~g~~ 130 (190)
T TIGR00639 78 HEVDLVVLAGFMRILGPTFLSRFAGRILNIHPSLLPAFPGL----HAVEQALEAGVK 130 (190)
T ss_pred cCCCEEEEeCcchhCCHHHHhhccCCEEEEeCCcccCCCCc----cHHHHHHHcCCC
Confidence 8999999999999999999999999999 999999997 899999999864
No 11
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=99.94 E-value=1.9e-26 Score=204.36 Aligned_cols=126 Identities=25% Similarity=0.294 Sum_probs=112.1
Q ss_pred CeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC-CCCC---ChHHHHHHHHh
Q 023530 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKEN---EREEELLELVQ 203 (281)
Q Consensus 128 ~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~-~k~~---~~e~~l~~~L~ 203 (281)
|+|||||+||+|+|+++|+++++++.+.++|++||||+ ++|.+.++|+++|||+++++ .+.. .+++++.+.|+
T Consensus 1 m~ki~vl~sg~gs~~~~ll~~~~~~~~~~~I~~vvs~~---~~~~~~~~a~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~ 77 (200)
T PRK05647 1 MKRIVVLASGNGSNLQAIIDACAAGQLPAEIVAVISDR---PDAYGLERAEAAGIPTFVLDHKDFPSREAFDAALVEALD 77 (200)
T ss_pred CceEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEecC---ccchHHHHHHHcCCCEEEECccccCchhHhHHHHHHHHH
Confidence 57999999999999999999999999889999999998 67899999999999999977 3321 13567888887
Q ss_pred --CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCC--Ccce
Q 023530 204 --NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDK--GCLC 260 (281)
Q Consensus 204 --~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~--g~~~ 260 (281)
++|++|++|||+|+++++++.|++++|| ||||+|||+ .|++||+.+|++ |+|+
T Consensus 78 ~~~~D~iv~~~~~~ii~~~~l~~~~~~~iNiHpslLP~yrG~----~p~~~ai~~g~~~tG~Tv 137 (200)
T PRK05647 78 AYQPDLVVLAGFMRILGPTFVSAYEGRIINIHPSLLPSFPGL----HTHEQALEAGVKVHGCTV 137 (200)
T ss_pred HhCcCEEEhHHhhhhCCHHHHhhccCCEEEEeCccccCCCCc----cHHHHHHHcCCCeEEEEE
Confidence 8999999999999999999999999999 999999997 899999999874 5544
No 12
>PLN02285 methionyl-tRNA formyltransferase
Probab=99.89 E-value=7.5e-23 Score=194.10 Aligned_cols=132 Identities=17% Similarity=0.177 Sum_probs=109.4
Q ss_pred CCCCeeEEEEeeCC--hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCC--------ChhHHHHHHhCCCCEEEeCCCCCCh
Q 023530 125 IDPKYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGP--------NSHVIRFLERHGIPYHYLCAKENER 194 (281)
Q Consensus 125 ~~~~~rIavl~Sg~--GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~--------~a~~~~~A~~~gIP~~~i~~k~~~~ 194 (281)
+++++||++|+|+. -+||++|+++++.+..+++|++||||+ |++ .+++.++|+++|||++++.......
T Consensus 3 ~~~~~kI~f~Gt~~fa~~~L~~L~~~~~~~~~~~~iv~Vvt~~-~~~~gr~~~~~~~pv~~~A~~~gIp~~~v~~~~~~~ 81 (334)
T PLN02285 3 SGRKKRLVFLGTPEVAATVLDALLDASQAPDSAFEVAAVVTQP-PARRGRGRKLMPSPVAQLALDRGFPPDLIFTPEKAG 81 (334)
T ss_pred CCCccEEEEEECCHHHHHHHHHHHhhhhccCCCCeEEEEEeCC-CCcccCCcccCCCHHHHHHHHcCCCcceecCccccC
Confidence 46789999999998 499999999988888789999999995 432 1369999999999976543111112
Q ss_pred HHHHHHHHh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcC--CCccee
Q 023530 195 EEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTD--KGCLCS 261 (281)
Q Consensus 195 e~~l~~~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d--~g~~~~ 261 (281)
++++.+.|+ ++|++|+|+||+||+++|++.|++++|| ||||+|||+ .|++||+++|| +||++-
T Consensus 82 ~~~~~~~l~~~~~Dliv~~~~~~ilp~~~l~~~~~g~iNiHpSLLP~yRG~----~pi~~ai~~G~~~tGvTih 151 (334)
T PLN02285 82 EEDFLSALRELQPDLCITAAYGNILPQKFLDIPKLGTVNIHPSLLPLYRGA----APVQRALQDGVNETGVSVA 151 (334)
T ss_pred CHHHHHHHHhhCCCEEEhhHhhhhcCHHHHhhccCCEEEEecccccCCCCc----CHHHHHHHcCCCcEEEEEE
Confidence 345667776 8999999999999999999999999999 999999997 99999999997 566554
No 13
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=99.88 E-value=1.7e-22 Score=175.82 Aligned_cols=125 Identities=24% Similarity=0.278 Sum_probs=104.4
Q ss_pred eeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC-CCCCC---hHHHHHHHHh-
Q 023530 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENE---REEELLELVQ- 203 (281)
Q Consensus 129 ~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~-~k~~~---~e~~l~~~L~- 203 (281)
|||+||+||+|+|++++++++..+...++|++|+||+ +...++.+|.+.++|...+. ..... .++++.+.++
T Consensus 1 mrI~~~~Sg~~~~~~~~l~~l~~~~~~~~iv~Vit~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 77 (181)
T PF00551_consen 1 MRIVFFGSGSGSFLKALLEALKARGHNVEIVLVITNP---DKPRGRSRAIKNGIPAQVADEKNFQPRSENDEELLELLES 77 (181)
T ss_dssp EEEEEEESSSSHHHHHHHHHHHTTSSEEEEEEEEESS---TTTHHHHHHHHTTHHEEEHHGGGSSSHHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCHHHHHHHHHHHhCCCCceEEEEeccc---cccccccccccCCCCEEeccccCCCchHhhhhHHHHHHHh
Confidence 6999999999999999999999887778999999996 45678899999999999887 22222 3467888888
Q ss_pred -CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCC--Ccce
Q 023530 204 -NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDK--GCLC 260 (281)
Q Consensus 204 -~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~--g~~~ 260 (281)
++|++|++|||+||++++++.|++++|| ||||+|||+ .|++|++++|++ |+++
T Consensus 78 ~~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHpslLP~yrG~----~p~~~ai~~g~~~~G~Tv 136 (181)
T PF00551_consen 78 LNPDLIVVAGYGRILPKEFLSIPPYGIINIHPSLLPKYRGA----SPIQWAILNGEKETGVTV 136 (181)
T ss_dssp TT-SEEEESS-SS---HHHHHHSTTSEEEEESSSTTTTBSS----THHHHHHHHTSSEEEEEE
T ss_pred hccceeehhhhHHHhhhhhhhcccccEEEEeecCCccCCCc----chhhhhhcCCcceeeeEE
Confidence 9999999999999999999999999999 999999997 999999999984 4444
No 14
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=1.9e-20 Score=175.21 Aligned_cols=119 Identities=21% Similarity=0.246 Sum_probs=101.0
Q ss_pred CeeEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCC--------hhHHHHHHhCCCCEEEeCCCCCChHHH
Q 023530 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN--------SHVIRFLERHGIPYHYLCAKENEREEE 197 (281)
Q Consensus 128 ~~rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~~--------a~~~~~A~~~gIP~~~i~~k~~~~e~~ 197 (281)
++||+||+|.+. .+|++|+++ | ++|++|+|. ||++. .|+.+.|.++|||+++.. +. +.+ +
T Consensus 1 ~mkivF~GTp~fa~~~L~~L~~~---~---~eivaV~Tq-pdkp~gR~~~l~~spVk~~A~~~~ipv~qP~-~l-~~~-e 70 (307)
T COG0223 1 MMRIVFFGTPEFAVPSLEALIEA---G---HEIVAVVTQ-PDKPAGRGKKLTPSPVKRLALELGIPVFQPE-KL-NDP-E 70 (307)
T ss_pred CcEEEEEcCchhhHHHHHHHHhC---C---CceEEEEeC-CCCccCCCCcCCCChHHHHHHHcCCceeccc-cC-CcH-H
Confidence 579999999985 889999883 4 699999997 78652 689999999999988854 22 222 5
Q ss_pred HHHHHh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCCCcce
Q 023530 198 LLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDKGCLC 260 (281)
Q Consensus 198 l~~~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~g~~~ 260 (281)
+.+.++ ++|++|++.|.|||+.++++.++.+||| ||||+|||+ +|+||++++||+=..+
T Consensus 71 ~~~~l~~l~~D~ivvvayG~ilp~~iL~~~~~G~iNvH~SLLPr~RGa----APIq~aI~~Gd~~TGv 134 (307)
T COG0223 71 FLEELAALDPDLIVVVAYGQILPKEILDLPPYGCINLHPSLLPRYRGA----APIQWAILNGDTETGV 134 (307)
T ss_pred HHHHHhccCCCEEEEEehhhhCCHHHHhcCcCCeEEecCccCccccCc----cHHHHHHHcCCcccce
Confidence 667776 8999999999999999999999999999 999999997 9999999999844333
No 15
>PRK06988 putative formyltransferase; Provisional
Probab=99.78 E-value=1.2e-18 Score=163.95 Aligned_cols=119 Identities=23% Similarity=0.305 Sum_probs=99.1
Q ss_pred CeeEEEEeeCC-h-hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCC-----hhHHHHHHhCCCCEEEeCCCCCChHHHHHH
Q 023530 128 KYKVAVLASKQ-E-HCLVDFLYGWQEGKLPVEITCVISNHDRGPN-----SHVIRFLERHGIPYHYLCAKENEREEELLE 200 (281)
Q Consensus 128 ~~rIavl~Sg~-G-snL~aLl~~~~~g~l~~eI~~Visn~pd~~~-----a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~ 200 (281)
|+||+||+|+. + .||++|++. + .+|++|+|+ ||++. .++.++|+++|||++.... . + ++++.+
T Consensus 2 ~mkIvf~Gs~~~a~~~L~~L~~~---~---~~i~~Vvt~-~d~~~~~~~~~~v~~~A~~~gip~~~~~~-~-~-~~~~~~ 71 (312)
T PRK06988 2 KPRAVVFAYHNVGVRCLQVLLAR---G---VDVALVVTH-EDNPTENIWFGSVAAVAAEHGIPVITPAD-P-N-DPELRA 71 (312)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhC---C---CCEEEEEcC-CCCCccCcCCCHHHHHHHHcCCcEEcccc-C-C-CHHHHH
Confidence 57999999998 3 799999874 4 589999998 55442 4789999999999987431 1 1 234667
Q ss_pred HHh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcC--CCcce
Q 023530 201 LVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTD--KGCLC 260 (281)
Q Consensus 201 ~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d--~g~~~ 260 (281)
.|+ ++|++|+++|++||++++++.++.++|| ||||+|||+ .|++||+++|| +|+|+
T Consensus 72 ~l~~~~~Dliv~~~~~~iip~~il~~~~~g~iNiHpslLP~yRG~----~pi~~ai~~g~~~tGvTi 134 (312)
T PRK06988 72 AVAAAAPDFIFSFYYRHMIPVDLLALAPRGAYNMHGSLLPKYRGR----VPVNWAVLNGETETGATL 134 (312)
T ss_pred HHHhcCCCEEEEehhccccCHHHHhcCCCCEEEeeCccccCCCCc----CHHHHHHHcCCCceEEEE
Confidence 777 8999999999999999999999999999 999999997 99999999997 45444
No 16
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=99.75 E-value=5.8e-18 Score=159.31 Aligned_cols=115 Identities=18% Similarity=0.251 Sum_probs=95.9
Q ss_pred eeEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCC--------ChhHHHHHHhCCCCEEEeCCCCCChHHHH
Q 023530 129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP--------NSHVIRFLERHGIPYHYLCAKENEREEEL 198 (281)
Q Consensus 129 ~rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~--------~a~~~~~A~~~gIP~~~i~~k~~~~e~~l 198 (281)
|||+||+|+.. .+|++|++. | .+|++|+|+ ||++ ..++.++|+++|||++...+. +.+ +.
T Consensus 1 mkIvf~Gs~~~a~~~L~~L~~~---~---~~i~~Vvt~-pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~~~~--~~~-~~ 70 (313)
T TIGR00460 1 LRIVFFGTPTFSLPVLEELRED---N---FEVVGVVTQ-PDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEKQ--RQL-EE 70 (313)
T ss_pred CEEEEECCCHHHHHHHHHHHhC---C---CcEEEEEcC-CCCccCCCCCCCCChHHHHHHHcCCCEEecCCC--CcH-HH
Confidence 58999999975 788888773 4 689999998 5543 246899999999999886522 112 44
Q ss_pred HHHHh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCCC
Q 023530 199 LELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDKG 257 (281)
Q Consensus 199 ~~~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~g 257 (281)
++.++ ++|++|+++|++||++++++.+++++|| ||||+|||+ +|++||+++||+=
T Consensus 71 ~~~l~~~~~Dliv~~~~~~iip~~il~~~~~g~iNiHpSlLP~yRG~----~pi~wai~~G~~~ 130 (313)
T TIGR00460 71 LPLVRELKPDVIVVVSFGKILPKEFLDLFPYGCINVHPSLLPRWRGG----APIQRAILNGDKK 130 (313)
T ss_pred HHHHHhhCCCEEEEccchhhCCHHHHhhccCCEEEecCccccCCCCc----cHHHHHHHCCCCe
Confidence 55566 8999999999999999999999999999 999999997 9999999999743
No 17
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=99.75 E-value=5.4e-18 Score=159.11 Aligned_cols=119 Identities=20% Similarity=0.249 Sum_probs=98.1
Q ss_pred eeEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCC--------ChhHHHHHHhCCCCEEEeCCCCCChHHHH
Q 023530 129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP--------NSHVIRFLERHGIPYHYLCAKENEREEEL 198 (281)
Q Consensus 129 ~rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~--------~a~~~~~A~~~gIP~~~i~~k~~~~e~~l 198 (281)
|||+||+|+.- .+|++|+++ + .+|++|+|. ||.+ ..++.++|+++|||++.... .+ +.++
T Consensus 1 mkIvf~G~~~~a~~~L~~L~~~---~---~~i~~Vvt~-~~~~~~r~~~~~~~~v~~~a~~~~Ip~~~~~~-~~--~~~~ 70 (309)
T PRK00005 1 MRIVFMGTPEFAVPSLKALLES---G---HEVVAVVTQ-PDRPAGRGKKLTPSPVKQLALEHGIPVLQPEK-LR--DPEF 70 (309)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---C---CcEEEEECC-CCCCCCCCCCCCCCHHHHHHHHcCCCEECcCC-CC--CHHH
Confidence 59999999874 899998874 3 589999997 5533 24789999999999977442 11 2345
Q ss_pred HHHHh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCCCccee
Q 023530 199 LELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDKGCLCS 261 (281)
Q Consensus 199 ~~~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~g~~~~ 261 (281)
.+.|+ ++|++|+++|++||++++++.++.++|| ||||+|||+ +|++||+++|++-+.++
T Consensus 71 ~~~l~~~~~Dliv~~~~~~iip~~il~~~~~g~iNiHpslLP~yRG~----~pi~wai~~g~~~~GvT 134 (309)
T PRK00005 71 LAELAALNADVIVVVAYGQILPKAVLDIPRLGCINLHASLLPRWRGA----APIQRAIIAGDAETGVT 134 (309)
T ss_pred HHHHHhcCcCEEEEehhhcccCHHHHhcCCCCEEEEeCcccccCCCc----cHHHHHHHcCCCeEEEE
Confidence 66666 8999999999999999999999999999 999999997 99999999998544444
No 18
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=99.73 E-value=1.6e-17 Score=125.73 Aligned_cols=72 Identities=15% Similarity=0.122 Sum_probs=66.7
Q ss_pred cEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccc
Q 023530 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (281)
Q Consensus 42 ~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~ 117 (281)
+++||+.||||||||++||++|+++||||+|++|+.. ++.|+|+++++.+. .+.++|+++|++++++++++.
T Consensus 1 ~~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~--~~~F~m~~~~~~~~--~~~~~l~~~l~~~~~~~~l~i 72 (77)
T cd04893 1 HLVISALGTDRPGILNELTRAVSESGCNILDSRMAIL--GTEFALTMLVEGSW--DAIAKLEAALPGLARRLDLTL 72 (77)
T ss_pred CEEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEE--cCEEEEEEEEEecc--ccHHHHHHHHHHHHHHcCCEE
Confidence 4799999999999999999999999999999999984 78999999999884 478999999999999999873
No 19
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.70 E-value=9.6e-17 Score=119.87 Aligned_cols=74 Identities=34% Similarity=0.606 Sum_probs=67.5
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccc
Q 023530 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (281)
Q Consensus 44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~ 117 (281)
+|++.|+||||||++||++|+++|+||++++|++....+.|+|++++.+|+...+.++|+++|+++++++++.|
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~ 74 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVAAEFDMDW 74 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCCcC
Confidence 58999999999999999999999999999999986667899999999999633689999999999999998763
No 20
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=99.68 E-value=2.1e-16 Score=161.54 Aligned_cols=119 Identities=18% Similarity=0.128 Sum_probs=97.7
Q ss_pred eeEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCC-----ChhHHHHHHhCCCCEEEeCCCCCChHHHHHHH
Q 023530 129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-----NSHVIRFLERHGIPYHYLCAKENEREEELLEL 201 (281)
Q Consensus 129 ~rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~-----~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~ 201 (281)
|||+||+|+.. .+|++|++. | .+|++|+|. ||+| ..++.++|+++|||++....- + +.++.+.
T Consensus 1 mkivf~g~~~~a~~~l~~L~~~---~---~~i~~V~t~-pd~~~~~~~~~~v~~~a~~~~ip~~~~~~~-~--~~~~~~~ 70 (660)
T PRK08125 1 MKAVVFAYHDIGCVGIEALLAA---G---YEIAAVFTH-TDNPGENHFFGSVARLAAELGIPVYAPEDV-N--HPLWVER 70 (660)
T ss_pred CeEEEECCCHHHHHHHHHHHHC---C---CcEEEEEeC-CCCCcCCCCcCHHHHHHHHcCCcEEeeCCC-C--cHHHHHH
Confidence 58999999874 889988873 4 589999997 5543 136899999999999985421 1 2345666
Q ss_pred Hh--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCCCccee
Q 023530 202 VQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDKGCLCS 261 (281)
Q Consensus 202 L~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~g~~~~ 261 (281)
|+ ++|++|+++|++||++++++.++.++|| ||||+|||+ +|++||+++||+-..++
T Consensus 71 l~~~~~D~iv~~~~~~ii~~~il~~~~~g~iN~H~slLP~yRG~----~p~~wai~~g~~~~GvT 131 (660)
T PRK08125 71 IRELAPDVIFSFYYRNLLSDEILQLAPAGAFNLHGSLLPKYRGR----APLNWVLVNGETETGVT 131 (660)
T ss_pred HHhcCCCEEEEccccccCCHHHHhhcCCCEEEEeCCcccCCCCc----CHHHHHHHcCCCcEEEE
Confidence 66 8999999999999999999999999999 999999997 99999999997543333
No 21
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.66 E-value=3.5e-16 Score=120.83 Aligned_cols=75 Identities=20% Similarity=0.156 Sum_probs=68.7
Q ss_pred cEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccce
Q 023530 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS 118 (281)
Q Consensus 42 ~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~~ 118 (281)
+++++++|+||||||++||++|+++||||++++|++. .+.|+|++++++|..+.+.++|+++|++++++++++|.
T Consensus 1 ~~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~--~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~~~l~~~ 75 (88)
T cd04872 1 KAVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIM--DGYFTMIMIVDISESNLDFAELQEELEELGKELGVKIR 75 (88)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhh--CCccEEEEEEEeCCCCCCHHHHHHHHHHHHHHcCCEEE
Confidence 4799999999999999999999999999999999874 78999999999985356799999999999999999853
No 22
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.65 E-value=6.5e-16 Score=116.01 Aligned_cols=71 Identities=17% Similarity=0.158 Sum_probs=65.7
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccc
Q 023530 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (281)
Q Consensus 44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~ 117 (281)
+++|.|+||||||++||++|+++||||+|++|.+. .+.|.|.+++++|+ +.+.++|+++|+.++++++++.
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~--~~~f~~~~~v~~p~-~~~~~~l~~~l~~l~~~l~l~i 71 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVI--HGRLSLGILVQIPD-SADSEALLKDLLFKAHELGLQV 71 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEE--cCeeEEEEEEEcCC-CCCHHHHHHHHHHHHHHcCceE
Confidence 47999999999999999999999999999998775 58899999999997 6789999999999999999873
No 23
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=99.61 E-value=3.5e-15 Score=112.50 Aligned_cols=73 Identities=16% Similarity=0.166 Sum_probs=67.2
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccC----CCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccc
Q 023530 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE----KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (281)
Q Consensus 44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~----~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~ 117 (281)
++++.|+||||||++||++|+++|+||.++++++.+ ..+.|+|++++.+|+ ..+.++|+++|+.+++++|+++
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~-~~~~~~l~~~l~~l~~~~~~~~ 77 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA-GTDLDALREELEELCDDLNVDI 77 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC-CCCHHHHHHHHHHHHHHhcceE
Confidence 479999999999999999999999999999998854 447999999999997 7889999999999999999884
No 24
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=99.61 E-value=9.3e-16 Score=119.02 Aligned_cols=75 Identities=20% Similarity=0.143 Sum_probs=70.5
Q ss_pred ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccc
Q 023530 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (281)
Q Consensus 41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~ 117 (281)
+++++||+|+|||||||+||++|+++|+||+|.+|+.. .|.|+|.+.+++|+...+..+++++|++.++++|++.
T Consensus 2 ~~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm--~~~ftm~~lV~~~~~~~d~~~lr~~l~~~~~~lgv~V 76 (90)
T COG3830 2 MRAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVM--DGFFTMIMLVDISKEVVDFAALRDELAAEGKKLGVDV 76 (90)
T ss_pred ceEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHH--hhhceeeeEEcCChHhccHHHHHHHHHHHHHhcCcEE
Confidence 57899999999999999999999999999999999876 7999999999999767899999999999999999984
No 25
>PRK00194 hypothetical protein; Validated
Probab=99.59 E-value=7.2e-15 Score=113.56 Aligned_cols=76 Identities=21% Similarity=0.165 Sum_probs=69.0
Q ss_pred ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccce
Q 023530 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS 118 (281)
Q Consensus 41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~~ 118 (281)
.++++++.|+||||||++||++|+++|+||+++++++. .+.|+|++++++|..+.+.++|+++|+++++++++++.
T Consensus 2 ~~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~~~~~~ 77 (90)
T PRK00194 2 MKAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIM--DGYFTMIMLVDISESKKDFAELKEELEELGKELGVKIR 77 (90)
T ss_pred ceEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhh--CCeeEEEEEEEecCCCCCHHHHHHHHHHHHHHcCCEEE
Confidence 47999999999999999999999999999999999874 68999999999985356789999999999999999853
No 26
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=99.58 E-value=5e-15 Score=111.72 Aligned_cols=73 Identities=19% Similarity=0.172 Sum_probs=63.4
Q ss_pred ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccc
Q 023530 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (281)
Q Consensus 41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~ 117 (281)
++++||++|+||||||++||+.|+++||||+|++|.+. .+.|.+.+.++.|+ . +.++|+++|+++++++|++.
T Consensus 1 ~~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~--~~~f~~~~~v~~~~-~-~~~~l~~~L~~l~~~~~l~v 73 (76)
T PF13740_consen 1 EQLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVL--GGRFTLIMLVSIPE-D-SLERLESALEELAEELGLDV 73 (76)
T ss_dssp EEEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEE--TTEEEEEEEEEESH-H-HHHHHHHHHHHHHHHTT-EE
T ss_pred CEEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEE--cCeEEEEEEEEeCc-c-cHHHHHHHHHHHHHHCCcEE
Confidence 36899999999999999999999999999999999876 78999999999985 3 78999999999999999874
No 27
>PRK07579 hypothetical protein; Provisional
Probab=99.57 E-value=1.2e-14 Score=132.45 Aligned_cols=108 Identities=16% Similarity=0.172 Sum_probs=87.4
Q ss_pred CeeEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHH-hCCCCEEEeCCCCCChHHHHHHHHhC
Q 023530 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLE-RHGIPYHYLCAKENEREEELLELVQN 204 (281)
Q Consensus 128 ~~rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~-~~gIP~~~i~~k~~~~e~~l~~~L~~ 204 (281)
|+||.||+.+.- .|++.|+.+ .++++.++.+|.++++ .+++ .+++|.+.++ -.+.+.+++++
T Consensus 1 ~k~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 65 (245)
T PRK07579 1 MKTILVLTDNVHAHALAVDLIAR--KNDMDVDYFCSFKSQT--------SFAKEIYQSPIKQLD-----VAERVAEIVER 65 (245)
T ss_pred CceEEEEcccHHHHHHHHHHHhh--ccCcceEEEEeccCCc--------ccccccccccccCcc-----hhhhHHhhhcC
Confidence 679999999883 999999997 4567789999999862 1333 5566644443 12346677779
Q ss_pred CCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCC
Q 023530 205 TDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDK 256 (281)
Q Consensus 205 ~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~ 256 (281)
+|++|+++|||||++++++.+ ++|| ||||+|||+ +|++||+++|++
T Consensus 66 ~DliVvvayg~ilp~~iL~~~--~~iNiHpSLLP~yRGa----aPi~wAI~nGe~ 114 (245)
T PRK07579 66 YDLVLSFHCKQRFPAKLVNGV--RCINIHPGFNPYNRGW----FPQVFSIINGLK 114 (245)
T ss_pred CCEEEEchhhccCCHHHHhhC--CEEEEcCCcCCCCCCc----CHHHHHHHCCCe
Confidence 999999999999999999987 4999 999999997 999999999984
No 28
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.52 E-value=5.5e-14 Score=123.98 Aligned_cols=77 Identities=12% Similarity=0.033 Sum_probs=70.3
Q ss_pred ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccC--CCC--eEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhccc
Q 023530 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE--KKN--VFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (281)
Q Consensus 41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~--~~g--~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~ 116 (281)
.+|.++|+|+||||||++||++|+++|+||+++++.+.+ ++| +|.|++++.+|+ +.+.++|+++|+++|++++++
T Consensus 94 ~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~-~~~~~~L~~~l~~l~~eL~vd 172 (190)
T PRK11589 94 ATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPA-SQDAANIEQAFKALCTELNAQ 172 (190)
T ss_pred ceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCC-CCCHHHHHHHHHHHHHHhCce
Confidence 369999999999999999999999999999999999843 344 999999999998 788999999999999999998
Q ss_pred ce
Q 023530 117 RS 118 (281)
Q Consensus 117 ~~ 118 (281)
..
T Consensus 173 ~~ 174 (190)
T PRK11589 173 GS 174 (190)
T ss_pred EE
Confidence 43
No 29
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.38 E-value=4.2e-12 Score=112.05 Aligned_cols=74 Identities=12% Similarity=-0.008 Sum_probs=66.6
Q ss_pred cccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccc
Q 023530 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (281)
Q Consensus 40 ~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~ 117 (281)
.++++||+.|+||||||++||+.|+++||||+|++|... +|.|.|.+.+..|. ...+.|+++|..+++++++..
T Consensus 6 ~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~l--gg~Fa~i~lvs~~~--~~~~~le~~L~~l~~~~~L~i 79 (190)
T PRK11589 6 QHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAML--GEEFTFIMLLSGSW--NAITLIESTLPLKGAELDLLI 79 (190)
T ss_pred ccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhh--CCceEEEEEEeCCh--hHHHHHHHHHHhhhhhcCeEE
Confidence 478999999999999999999999999999999999764 78999999998775 378999999999998888774
No 30
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.21 E-value=2.7e-11 Score=104.37 Aligned_cols=80 Identities=14% Similarity=0.083 Sum_probs=71.8
Q ss_pred CCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeecc--CC--CCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhh
Q 023530 37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP--EK--KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKM 112 (281)
Q Consensus 37 ~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~--~~--~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~ 112 (281)
..+..+|.+.|.+.||||||.++|++|++||+||+++++.+- ++ +.+|.+.+.+.+|. ..+.+.|+++|+++|++
T Consensus 87 ~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa-~~~i~~l~~~f~al~~~ 165 (176)
T COG2716 87 PANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPA-NLSISALRDAFEALCDE 165 (176)
T ss_pred CCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCC-cCcHHHHHHHHHHHHHh
Confidence 456678999999999999999999999999999999998772 33 44999999999998 89999999999999999
Q ss_pred hcccc
Q 023530 113 FNAMR 117 (281)
Q Consensus 113 l~l~~ 117 (281)
++++.
T Consensus 166 L~v~~ 170 (176)
T COG2716 166 LNVDG 170 (176)
T ss_pred hccee
Confidence 99874
No 31
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=98.94 E-value=8.5e-10 Score=85.06 Aligned_cols=72 Identities=13% Similarity=0.029 Sum_probs=58.7
Q ss_pred EEEEEcCC-CcchHHHHHHHHHhCCCeEeEeeeeccC-------CCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcc
Q 023530 44 IHVFHCPD-EVGIVAKLSECIASRGGNILAADVFVPE-------KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (281)
Q Consensus 44 iltV~G~D-rpGIVa~VS~~La~~giNI~dl~q~~~~-------~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l 115 (281)
++|+.|.| +.|+|++||+.|+++|+||.++++.... ..+..-|.++++.| +.+.++|+++|.++++++|+
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~--~~~~~~lr~~L~~la~elgv 78 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQ--PADLEALRAALLELASELNV 78 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCC--CCCHHHHHHHHHHHhcccCc
Confidence 58999999 9999999999999999999999995311 11244556666655 46899999999999999999
Q ss_pred cc
Q 023530 116 MR 117 (281)
Q Consensus 116 ~~ 117 (281)
|.
T Consensus 79 DI 80 (84)
T cd04871 79 DI 80 (84)
T ss_pred eE
Confidence 83
No 32
>KOG3082 consensus Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=2.8e-09 Score=99.21 Aligned_cols=121 Identities=17% Similarity=0.177 Sum_probs=82.5
Q ss_pred CeeEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCC-------CChhHHHHHHhCCCCEEEeCCCCCChHHHH
Q 023530 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRG-------PNSHVIRFLERHGIPYHYLCAKENEREEEL 198 (281)
Q Consensus 128 ~~rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~-------~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l 198 (281)
+.++.+++|-.. .-++.|+.. .+.+.+++..|-+ ...|+...|...|+++..+-.. ++..
T Consensus 6 ~~nv~~~~sd~~~~~~~~~l~~~-------~~~~~iv~~pp~~~~~~k~~lpsP~a~~a~~k~la~~kl~p~----~k~~ 74 (338)
T KOG3082|consen 6 PLNVIFLGSDEFSIPILRKLIGC-------VQRVRIVSAPPKRQSRRKEILPSPAAMEANAKGLAYIKLQPG----WKNF 74 (338)
T ss_pred ccCcchhccccccchhhhhHHHH-------HHhhhhccCCcchhhccCccCCCccccccccccceeeeccCh----hhcc
Confidence 445666666664 334455543 3455566653211 1234555666677776654311 1111
Q ss_pred HHHHh-CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcC--CCcceeee
Q 023530 199 LELVQ-NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTD--KGCLCSTR 263 (281)
Q Consensus 199 ~~~L~-~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d--~g~~~~~~ 263 (281)
-+... +.|++|.|.|+|+|+.+|+.++++++|| ||||+|||+ +||++|+++|| +|+++-+.
T Consensus 75 ~d~~~~~~~l~ItaSfGrllp~kll~~~pyg~iNVHPSLLPk~RGa----APV~~all~GD~~TGVTI~~i 141 (338)
T KOG3082|consen 75 HDLMRPDDQLAITASFGRLLPFKLLNQLPYGGINVHPSLLPKYRGA----APVQRALLNGDTLTGVTIQTI 141 (338)
T ss_pred ccccCCCcceEEEeehhccCcHHHHhhCCcceeecChhhcccccCc----chHHHHHhcCCcccceEEEEe
Confidence 14444 8999999999999999999999999999 999999998 99999999998 66666543
No 33
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.78 E-value=2.8e-08 Score=70.96 Aligned_cols=64 Identities=20% Similarity=0.163 Sum_probs=48.4
Q ss_pred EEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCC-CeEEEEEEEEeCCCCCCHHHHHHHHHHHh
Q 023530 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKK-NVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (281)
Q Consensus 43 ~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~-g~F~mrlev~~p~~~~~~~~L~~~L~~la 110 (281)
|+|++.++||||++++|+++|+++|+||..+.++..... +.+++....+ ..+.+.+.++|+++.
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~ 65 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD----EEDLEKLLEELEALP 65 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE----GHGHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC----CCCHHHHHHHHHccc
Confidence 678999999999999999999999999999999876432 2334333333 235677777777654
No 34
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=98.51 E-value=3.3e-07 Score=80.02 Aligned_cols=74 Identities=22% Similarity=0.291 Sum_probs=59.9
Q ss_pred cEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccc
Q 023530 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (281)
Q Consensus 42 ~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~ 117 (281)
++++++.+.|+||++++||++|+++|+||.+++......+|.- ++.+.+|+.....++|+++|+++++.++++.
T Consensus 2 ~~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~s--r~TIvv~~~~~~ieqL~kQL~KLidVl~V~~ 75 (174)
T CHL00100 2 KHTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGIS--RITMVVPGDDRTIEQLTKQLYKLVNILKVQD 75 (174)
T ss_pred eEEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCcc--EEEEEEECCHHHHHHHHHHHHHHhHhhEEEe
Confidence 5789999999999999999999999999999999654445544 4555555522238899999999999988763
No 35
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=98.39 E-value=2e-06 Score=64.67 Aligned_cols=67 Identities=15% Similarity=0.119 Sum_probs=50.8
Q ss_pred CcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 023530 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (281)
Q Consensus 39 ~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~l 109 (281)
...+..|.+.+.||||++++|++.+++.|+||.+++.......+.+.+.+.+++++ .++|..-++++
T Consensus 3 ~~f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d----~~~L~~ii~~L 69 (80)
T PF13291_consen 3 KSFPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKD----LEHLNQIIRKL 69 (80)
T ss_dssp --EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESS----HHHHHHHHHHH
T ss_pred cEEEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECC----HHHHHHHHHHH
Confidence 34678899999999999999999999999999999997642367888899999874 55555555444
No 36
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=98.37 E-value=5.4e-07 Score=78.00 Aligned_cols=93 Identities=14% Similarity=0.067 Sum_probs=69.6
Q ss_pred cEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccceeee
Q 023530 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVR 121 (281)
Q Consensus 42 ~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~~~~~ 121 (281)
.++|+++|+||||++..+++..+++||||++++-.. .++.|...+.+..|.+ ..+.|++.|..+..+.|+... |.
T Consensus 5 ~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~--~g~~~a~i~lisgs~d--av~~le~~l~~l~~~~~L~v~-m~ 79 (176)
T COG2716 5 YLVITAVGADRPGLVNTLARAVASSGCNWLESRLAM--LGEEFAGIMLISGSWD--AVTLLEATLPLLGAELDLLVV-MK 79 (176)
T ss_pred EEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHH--hhcceeEEEEEeeCHH--HHHHHHHHhhcccccCCeEEE-Ee
Confidence 389999999999999999999999999999988743 3667777777777652 578999999999998887643 22
Q ss_pred ecCCC----CCeeEEEEeeCCh
Q 023530 122 VPDID----PKYKVAVLASKQE 139 (281)
Q Consensus 122 ~~~~~----~~~rIavl~Sg~G 139 (281)
-.... ...-+.|=+.+.+
T Consensus 80 rt~~~~~~a~~~~v~v~v~a~D 101 (176)
T COG2716 80 RTGAHPTPANPAPVWVYVDAND 101 (176)
T ss_pred ecCCCccCCCCceEEEEEEecC
Confidence 11111 1234566566654
No 37
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.32 E-value=2.9e-06 Score=63.51 Aligned_cols=46 Identities=11% Similarity=0.107 Sum_probs=40.1
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEE
Q 023530 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI 91 (281)
Q Consensus 44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~ 91 (281)
+++|.|+||||+++.||++|+++|+||.+.+.++. .|.+...+.+.
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~--~~~~~d~f~V~ 47 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTH--NGRLACVIYVR 47 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEE--CCEEEEEEEEE
Confidence 68999999999999999999999999999988764 66776666664
No 38
>PRK08577 hypothetical protein; Provisional
Probab=98.25 E-value=6.2e-06 Score=68.75 Aligned_cols=77 Identities=18% Similarity=0.165 Sum_probs=59.6
Q ss_pred CCCCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHh
Q 023530 34 SSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (281)
Q Consensus 34 ~~~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la 110 (281)
+-.++.-..+.+++.+.|+||++++|++.|+++++||.++++......+.+.+.+.+++++...+.+++.+.|+.+.
T Consensus 48 ~~~~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~l~ 124 (136)
T PRK08577 48 PIALPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKKLE 124 (136)
T ss_pred EcCCCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHcCC
Confidence 34445556899999999999999999999999999999998865444567778888998862134566666666554
No 39
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.05 E-value=3.5e-05 Score=55.39 Aligned_cols=49 Identities=18% Similarity=0.170 Sum_probs=39.8
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCC
Q 023530 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDP 94 (281)
Q Consensus 44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~ 94 (281)
.|+|.|+|+||++++++++|+++|+||.++...... +.....+.+..+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~--~~~~~~~~v~~~~ 50 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTG--ERALDVFYVTDSD 50 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecC--CEEEEEEEEECCC
Confidence 588999999999999999999999999999987642 3455556666544
No 40
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.99 E-value=2.6e-05 Score=55.79 Aligned_cols=49 Identities=22% Similarity=0.134 Sum_probs=37.6
Q ss_pred EEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccC---CCCeEEEEEEEEeC
Q 023530 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE---KKNVFYSRSEFIFD 93 (281)
Q Consensus 45 ltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~---~~g~F~mrlev~~p 93 (281)
+.|.++|+||.+++|++.++++|+||.++.+.... ..+...+.+.++++
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~ 52 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR 52 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC
Confidence 35788999999999999999999999999876432 13444555566654
No 41
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.98 E-value=3e-05 Score=56.32 Aligned_cols=63 Identities=19% Similarity=0.190 Sum_probs=44.4
Q ss_pred EEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 023530 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (281)
Q Consensus 43 ~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~ 108 (281)
|.+++..+|+||.++++++.|+++|+||.++.+...+....-.+++.++.+. +.+.+.+.|++
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~---~~~~~~~~L~~ 64 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQE---DRERAKEILKE 64 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHH---HHHHHHHHHHH
Confidence 6789999999999999999999999999999765532111222345554332 45566666654
No 42
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.96 E-value=7.7e-05 Score=54.05 Aligned_cols=48 Identities=17% Similarity=0.104 Sum_probs=38.6
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeC
Q 023530 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFD 93 (281)
Q Consensus 44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p 93 (281)
.+.|.|+||||+++++++.|+++|+||.+++.... .+.....+.+..+
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~--~~~~~~~f~i~~~ 49 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATL--GERAEDVFYVTDA 49 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEec--CCEEEEEEEEECC
Confidence 57899999999999999999999999999998754 3444445555543
No 43
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.93 E-value=4.6e-05 Score=55.90 Aligned_cols=61 Identities=15% Similarity=0.228 Sum_probs=47.6
Q ss_pred EEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHh
Q 023530 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (281)
Q Consensus 45 ltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la 110 (281)
|.+.++||||++++|++.+++.|+||.+++.... ..+...+.+.+++++ .++|.+-+..+.
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~vev~~----~~~l~~i~~~L~ 62 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQ-GRDYTVRDITVDAPS----EEHAETIVAAVR 62 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEe-cCCEEEEEEEEEcCC----HHHHHHHHHHHh
Confidence 6789999999999999999999999999987543 246777778888764 555555555443
No 44
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.92 E-value=5.1e-05 Score=55.77 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=42.0
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCC
Q 023530 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDP 94 (281)
Q Consensus 44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~ 94 (281)
.+.+.++|+||++++|++.|++.|+||..+++...+ .+.+.+.++++..+
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~-~~~~~i~~~v~v~~ 51 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPI-HGRANVTISIDTST 51 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCC-CCeEEEEEEEEcCc
Confidence 578999999999999999999999999999985432 46777788887654
No 45
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=97.92 E-value=5.1e-05 Score=54.13 Aligned_cols=64 Identities=23% Similarity=0.122 Sum_probs=46.8
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 023530 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (281)
Q Consensus 44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~l 109 (281)
.|.+.+.|+||++++++++|+++|+||..+.+...+.++...+.+++..++ ...+++.++|+.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~ 65 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDD--DVIEQIVKQLNKL 65 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCH--HHHHHHHHHHhCC
Confidence 477889999999999999999999999999986532456666667776531 2344455555443
No 46
>PRK04435 hypothetical protein; Provisional
Probab=97.91 E-value=6.4e-05 Score=63.81 Aligned_cols=67 Identities=21% Similarity=0.214 Sum_probs=52.9
Q ss_pred ccccCCCCccCCCCCCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCC
Q 023530 22 FKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDP 94 (281)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~ 94 (281)
+|..=|||.. ........|++.++|+||++++|.+.++++|+||..++|... ..|...+.+.++..+
T Consensus 54 ykd~vf~~~~-----~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~-~~g~a~vs~tVevs~ 120 (147)
T PRK04435 54 YKDYVFPFDE-----MVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIP-LQGRANVTISIDTSS 120 (147)
T ss_pred CCCeeECccc-----cCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcC-CCCEEEEEEEEEeCC
Confidence 3444555544 355678999999999999999999999999999999998653 356667777787764
No 47
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.82 E-value=0.00022 Score=53.17 Aligned_cols=65 Identities=15% Similarity=0.099 Sum_probs=48.4
Q ss_pred EEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 023530 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (281)
Q Consensus 43 ~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~l 109 (281)
+.|.|.++||||+.+.++.+|+.+|+||.+.+-++.. .|.=.=.+.|.-.. +.+..+|++++++.
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~-dG~~LDtF~V~d~~-~~~~~~~~~~~~~~ 66 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTD-DGLALDIFVVTGWK-RGETAALGHALQKE 66 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcC-CCeEEEEEEEecCC-ccchHHHHHHHHHh
Confidence 5689999999999999999999999999999888643 34322233343333 55677888888753
No 48
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=97.80 E-value=9.2e-05 Score=56.33 Aligned_cols=67 Identities=12% Similarity=0.085 Sum_probs=50.5
Q ss_pred cEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHh
Q 023530 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (281)
Q Consensus 42 ~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la 110 (281)
++.+++...|+||++++|++.++.+|.||..++.......|...|.+.+... +...+++...|+++-
T Consensus 2 ~~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~--~~~i~qi~kQL~KLi 68 (76)
T PRK06737 2 SHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCT--ENEATLLVSQLKKLI 68 (76)
T ss_pred eEEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECC--HHHHHHHHHHHhCCc
Confidence 5789999999999999999999999999999998654445665665655422 334566666666543
No 49
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.80 E-value=0.00017 Score=51.61 Aligned_cols=62 Identities=23% Similarity=0.258 Sum_probs=44.3
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 023530 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (281)
Q Consensus 44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~l 109 (281)
.+++.++|++|+++++++.|+++++||.++.+.... .+.+.+.+.+. . ....+++.+.|++.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~-~~~~~~~i~~~--~-~~~~~~~~~~L~~~ 63 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIER-EGKARIYMELE--G-VGDIEELVEELRSL 63 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccC-CCeEEEEEEEe--c-cccHHHHHHHHhCC
Confidence 578999999999999999999999999999886432 34555554444 2 12344555555543
No 50
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.79 E-value=0.00018 Score=52.14 Aligned_cols=64 Identities=11% Similarity=0.041 Sum_probs=47.2
Q ss_pred EEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHh
Q 023530 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (281)
Q Consensus 43 ~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la 110 (281)
|.|.+.+.|++|+++++++.|+++|+||..+.+......+...+.+.+... +.+++++.++.+.
T Consensus 1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~i~~L~ 64 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHET----SEAALNAALAEIE 64 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccC----CHHHHHHHHHHHH
Confidence 468899999999999999999999999999987543222555555555533 4566666665554
No 51
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=97.75 E-value=0.00011 Score=53.29 Aligned_cols=61 Identities=18% Similarity=0.120 Sum_probs=43.6
Q ss_pred EEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 023530 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (281)
Q Consensus 45 ltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~l 109 (281)
+.+.++|+||+++++++.|+++|+||.++........+...+.+.++.+. ..++.+++.+.
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~~----~~~~~~~l~~~ 62 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEPV----PDEVLEELRAL 62 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCCC----CHHHHHHHHcC
Confidence 56789999999999999999999999998754322345556666665432 34555555543
No 52
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=97.74 E-value=0.00011 Score=50.68 Aligned_cols=49 Identities=18% Similarity=0.183 Sum_probs=39.3
Q ss_pred EEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCC
Q 023530 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDP 94 (281)
Q Consensus 45 ltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~ 94 (281)
|.+.++|+||+++++++.|+++++||.++.+... ..+...+.+.+..+.
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~ 49 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTD-DDGLATIRLTLEVRD 49 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEEC-CCCEEEEEEEEEECC
Confidence 4678999999999999999999999999987543 234555677777664
No 53
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=97.69 E-value=0.00016 Score=55.98 Aligned_cols=69 Identities=10% Similarity=0.053 Sum_probs=51.8
Q ss_pred cEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhh
Q 023530 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (281)
Q Consensus 42 ~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~ 111 (281)
+.+|++.-.|+||++++||..|+.+|.||..++..-....|.-.|.+.+...+ ....+++.+.|+++-+
T Consensus 2 k~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d-~~~ieqI~kQL~Klid 70 (84)
T PRK13562 2 TRILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQD-DTSLHILIKKLKQQIN 70 (84)
T ss_pred cEEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCC-HHHHHHHHHHHhCCcc
Confidence 56899999999999999999999999999999886554556666666665333 3345666666666543
No 54
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=97.67 E-value=0.00023 Score=50.39 Aligned_cols=61 Identities=25% Similarity=0.285 Sum_probs=44.1
Q ss_pred EEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 023530 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (281)
Q Consensus 45 ltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~l 109 (281)
+.+.++|++|+++++++.|+++|+||.++........+...+.+.+ .. . ..+++.+.|+++
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v--~~-~-~~~~l~~~l~~~ 62 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV--DS-P-VPEEVLEELKAL 62 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc--CC-C-CCHHHHHHHHcC
Confidence 6788999999999999999999999999988643223555555555 32 2 355666666554
No 55
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.60 E-value=0.0008 Score=49.84 Aligned_cols=35 Identities=29% Similarity=0.470 Sum_probs=32.3
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeecc
Q 023530 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP 78 (281)
Q Consensus 44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~ 78 (281)
.+.|.++||||+.+.|+++|+++|+||.+..-++.
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~ 37 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTT 37 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEe
Confidence 68899999999999999999999999999987654
No 56
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.60 E-value=0.00082 Score=50.57 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=32.5
Q ss_pred EEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeec
Q 023530 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (281)
Q Consensus 43 ~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~ 77 (281)
+++.|.|+||||+.+.++++|+++|+||.+.+-++
T Consensus 1 ~~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~T 35 (76)
T cd04927 1 FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVST 35 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEE
Confidence 36899999999999999999999999999988875
No 57
>PRK03381 PII uridylyl-transferase; Provisional
Probab=97.59 E-value=0.0022 Score=67.71 Aligned_cols=70 Identities=13% Similarity=-0.019 Sum_probs=55.6
Q ss_pred cccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCC-CCHHHHHHHHHHHhh
Q 023530 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIK-WPREQMDEDFFKLSK 111 (281)
Q Consensus 40 ~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~-~~~~~L~~~L~~la~ 111 (281)
.....|+|.|+||||+++.||.+|+.+|+||++.+.++ ..|.+...+.|.-+... ...+.++++|++...
T Consensus 597 ~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t--~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~~L~ 667 (774)
T PRK03381 597 PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS--HDGVAVLEFVVSPRFGSPPDAALLRQDLRRALD 667 (774)
T ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe--cCCEEEEEEEEECCCCCcchHHHHHHHHHHHHc
Confidence 45678999999999999999999999999999999987 47888777777654312 235677888876544
No 58
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=97.56 E-value=0.00044 Score=52.61 Aligned_cols=67 Identities=7% Similarity=0.089 Sum_probs=51.9
Q ss_pred ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHh
Q 023530 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (281)
Q Consensus 41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la 110 (281)
+++.|++.-.++||.+++|++.++.+|.||..++.......+.-.|.+.++ + +-..+++.+.|+++-
T Consensus 2 m~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~--~-~~~i~ql~kQL~KL~ 68 (76)
T PRK11152 2 MQHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA--S-ERPIDLLSSQLNKLV 68 (76)
T ss_pred ceEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC--C-CchHHHHHHHHhcCc
Confidence 578999999999999999999999999999999986543444444444443 3 556778888777653
No 59
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=97.55 E-value=0.00018 Score=76.36 Aligned_cols=69 Identities=19% Similarity=0.281 Sum_probs=52.2
Q ss_pred CCCCcc-CCCCCCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCC--CCeEEEEEEEEeCC
Q 023530 26 KFPGEP-IESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEK--KNVFYSRSEFIFDP 94 (281)
Q Consensus 26 ~~~~~~-~~~~~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~--~g~F~mrlev~~p~ 94 (281)
.|+..| |...+.......+++|.|+|||||+++||++|+++|+||.+....+..+ ...|+++.....|.
T Consensus 762 ~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~ 833 (850)
T TIGR01693 762 HFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKL 833 (850)
T ss_pred CCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCC
Confidence 344333 4444555567899999999999999999999999999999999887532 33788766665553
No 60
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.54 E-value=0.00025 Score=52.63 Aligned_cols=57 Identities=11% Similarity=0.123 Sum_probs=43.2
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 023530 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (281)
Q Consensus 44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~l 109 (281)
.|.+.|.||+|++++|++.+++.|+||..+++... +. +.+++++.+ .++|..-++++
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~---~~--i~l~i~v~~----~~~L~~li~~L 58 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK---GR--IYLNFPTIE----FEKLQTLMPEI 58 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC---Ce--EEEEeEecC----HHHHHHHHHHH
Confidence 47889999999999999999999999999998543 33 667777654 44444444443
No 61
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=97.49 E-value=0.0006 Score=54.11 Aligned_cols=70 Identities=16% Similarity=0.033 Sum_probs=51.1
Q ss_pred CcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhh
Q 023530 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (281)
Q Consensus 39 ~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~ 111 (281)
+..+++|++.-.|+||++++||..|+.+|.||..++..-....+.-.|.+.+. + +...+++...|+++-+
T Consensus 5 ~~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~--~-~~~i~Qi~kQL~KLid 74 (96)
T PRK08178 5 THDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN--D-DQRLEQMISQIEKLED 74 (96)
T ss_pred CCCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc--C-chHHHHHHHHHhCCcC
Confidence 35679999999999999999999999999999999875433334333444343 3 3456777777776643
No 62
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.49 E-value=0.00028 Score=53.55 Aligned_cols=46 Identities=11% Similarity=0.221 Sum_probs=36.3
Q ss_pred EEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccC--CCCeEEEEE
Q 023530 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE--KKNVFYSRS 88 (281)
Q Consensus 43 ~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~--~~g~F~mrl 88 (281)
-++.|.|+||||++++|+..|++.|++|....-.+.. -...|+.+=
T Consensus 2 TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d 49 (75)
T cd04897 2 SVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRH 49 (75)
T ss_pred EEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEc
Confidence 3789999999999999999999999999987765531 122566533
No 63
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.46 E-value=0.00076 Score=47.92 Aligned_cols=61 Identities=23% Similarity=0.193 Sum_probs=42.4
Q ss_pred EEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 023530 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (281)
Q Consensus 45 ltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~l 109 (281)
|++.++|+||+++++++.|+++|+||..+.+......+...+. +.+.+ . +..++.++|+++
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~--i~v~~-~-~~~~~i~~l~~~ 62 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMV--IEVDQ-P-IDEEVIEEIKKI 62 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEE--EEeCC-C-CCHHHHHHHHcC
Confidence 6788999999999999999999999999987532123333333 45443 2 455555555554
No 64
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.46 E-value=0.0014 Score=47.62 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=42.9
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 023530 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (281)
Q Consensus 44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~ 108 (281)
.+++..+|+||.++++++.|+++|+||..+........+.=.+.+.++.+ +.+++.+.|++
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~----~~~~~~~~L~~ 63 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTM----NPRPIIEDLRR 63 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecC----CHHHHHHHHHH
Confidence 57888999999999999999999999999876533223332334444432 34566666655
No 65
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.46 E-value=0.0012 Score=48.86 Aligned_cols=35 Identities=14% Similarity=0.291 Sum_probs=31.9
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeecc
Q 023530 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP 78 (281)
Q Consensus 44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~ 78 (281)
.++|..+||||+.++|+++|+++|+||.....++.
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~ 37 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQ 37 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecC
Confidence 57889999999999999999999999999987643
No 66
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=97.42 E-value=0.003 Score=55.07 Aligned_cols=136 Identities=22% Similarity=0.178 Sum_probs=80.6
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccceeeeec
Q 023530 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVP 123 (281)
Q Consensus 44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~~~~~~~ 123 (281)
-+++....+||...++|..++++|+||+..+|+.......=+..++++ . ..+.+.|.+.++.+.-- . .+++.
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiE--g-i~d~e~l~~~lks~d~v--~---ev~i~ 75 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIE--G-IDDFEKLLERLKSFDYV--I---EVEIH 75 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEee--C-CCCHHHHHHHhhccceE--E---Eeeec
Confidence 467888999999999999999999999999999854322333445554 2 23677777777654211 1 23333
Q ss_pred CCC---CCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC-CCC-CChHHHH
Q 023530 124 DID---PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKE-NEREEEL 198 (281)
Q Consensus 124 ~~~---~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~-~k~-~~~e~~l 198 (281)
.+= .-+||.|++-|. .+.....| ++.-|.+|||.=..++ ... ---|+++
T Consensus 76 ~sle~iyGKRvIiiGGGA------qVsqVA~G--------------------AIsEADRHNiRGERISvDTiPlVGEE~l 129 (218)
T COG1707 76 RSLEEIYGKRVIIIGGGA------QVSQVARG--------------------AISEADRHNIRGERISVDTIPLVGEEEL 129 (218)
T ss_pred chHHHHhCcEEEEECCch------hHHHHHHh--------------------hcchhhhcccccceeeeecccccChHHH
Confidence 221 236788776542 12222223 1223456666544443 110 1124556
Q ss_pred HHHHh------CCCEEEEecc
Q 023530 199 LELVQ------NTDFLVLARY 213 (281)
Q Consensus 199 ~~~L~------~~DlIVLAgY 213 (281)
.+..+ ++...||||-
T Consensus 130 aEAVkAV~rLpRv~iLVLAGs 150 (218)
T COG1707 130 AEAVKAVARLPRVGILVLAGS 150 (218)
T ss_pred HHHHHHHhccccceeEEEecc
Confidence 55554 6899999985
No 67
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.38 E-value=0.0011 Score=48.77 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=29.7
Q ss_pred EEEEcCCCcchHHHHHHHHHhCCCeEeEeeeec
Q 023530 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (281)
Q Consensus 45 ltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~ 77 (281)
+++.=+|+||.++++++.++++|+||..+.+..
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~ 34 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAF 34 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEecc
Confidence 567789999999999999999999999997654
No 68
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.36 E-value=0.0006 Score=47.56 Aligned_cols=46 Identities=22% Similarity=0.181 Sum_probs=36.6
Q ss_pred EEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEE
Q 023530 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI 91 (281)
Q Consensus 45 ltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~ 91 (281)
+++..+|+||.++++++.|+++|+||..+...... .+.-.+++.++
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~-~~~~~~~~~v~ 46 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETR-GEFGILRLIFS 46 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEcc-CCcEEEEEEEC
Confidence 35788999999999999999999999999866542 34555566665
No 69
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=97.35 E-value=0.00082 Score=58.09 Aligned_cols=68 Identities=19% Similarity=0.126 Sum_probs=51.2
Q ss_pred cEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhh
Q 023530 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (281)
Q Consensus 42 ~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~ 111 (281)
++++++.-+|+||.+++|++.|+++|+||..+...-....|...|.+.++.. +...+++...|+++-+
T Consensus 2 ~~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~--~~~i~qi~kQl~KLid 69 (161)
T PRK11895 2 RHTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGD--EQVIEQITKQLNKLID 69 (161)
T ss_pred eEEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECC--HHHHHHHHHHHhcccc
Confidence 5789999999999999999999999999999987543334555555555532 3346777777776643
No 70
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=97.31 E-value=0.00098 Score=57.37 Aligned_cols=67 Identities=21% Similarity=0.181 Sum_probs=51.1
Q ss_pred EEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhh
Q 023530 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (281)
Q Consensus 43 ~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~ 111 (281)
++|++.-.|+||.+++|++.|+++|+||..+........|...|.+.++.+ +...+++.+.|+++-+
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d--~~~i~qi~kQl~Kli~ 68 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGD--DKVLEQITKQLNKLVD 68 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECC--HHHHHHHHHHHhcCcc
Confidence 689999999999999999999999999999987644335666666666642 3356677777766643
No 71
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=97.30 E-value=0.00038 Score=50.10 Aligned_cols=58 Identities=14% Similarity=0.140 Sum_probs=43.0
Q ss_pred EEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 023530 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (281)
Q Consensus 45 ltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~ 108 (281)
+++.+.|+||.++++++.++++|+||..+.... ..|...+.++++.+ ..+++-+.+.+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~--~~~~a~~~~~~~~~----~l~~li~~l~~ 59 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQT--RGEIGYVVIDIDSE----VSEELLEALRA 59 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccC--CCCEEEEEEEcCCC----CCHHHHHHHHc
Confidence 677899999999999999999999998886532 23666666666654 34555555544
No 72
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.28 E-value=0.0014 Score=49.39 Aligned_cols=36 Identities=11% Similarity=0.058 Sum_probs=32.5
Q ss_pred EEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeecc
Q 023530 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP 78 (281)
Q Consensus 43 ~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~ 78 (281)
.+|.|.++||||+.++|++.|+++|++|....-.+.
T Consensus 2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~ 37 (72)
T cd04895 2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSD 37 (72)
T ss_pred EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeec
Confidence 478999999999999999999999999998776553
No 73
>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism]
Probab=97.27 E-value=0.00044 Score=68.48 Aligned_cols=136 Identities=18% Similarity=0.198 Sum_probs=92.9
Q ss_pred eeEEEEeeCC-hhHHHHHHHhhh-cCCCCeeEEEEEeCCCCCC--ChhHHHHHHhCCCCEEEeC--CCCCChHHHHHHHH
Q 023530 129 YKVAVLASKQ-EHCLVDFLYGWQ-EGKLPVEITCVISNHDRGP--NSHVIRFLERHGIPYHYLC--AKENEREEELLELV 202 (281)
Q Consensus 129 ~rIavl~Sg~-GsnL~aLl~~~~-~g~l~~eI~~Visn~pd~~--~a~~~~~A~~~gIP~~~i~--~k~~~~e~~l~~~L 202 (281)
|||||.+..- | ++.....+ .| .||++|++= ||.. .-+..--|++-|+|++..+ ++.+..--++++.-
T Consensus 1 mkiaiigqs~fg---~~vy~~lrk~g---heiv~vfti-pdk~g~~d~l~~ea~kdgvpv~k~srwr~k~~~lp~~~~~y 73 (881)
T KOG2452|consen 1 MKIAVIGQSLFG---QEVYCHLRKEG---HEVVGVFTV-PDKDGKADPLGLEAEKDGVPVFKYSRWRAKAQALPDVVAKY 73 (881)
T ss_pred CeeEEechhhhh---HHHHHHHHhcC---ceEEEEEEe-cCCCCCcCcccccccccCcceechhhhhhhccccHHHHHHH
Confidence 5788876543 3 23333322 34 699999996 6631 1233335778899999876 22111112455555
Q ss_pred h--CCCEEEEecccccCChhHHhhhcCCcee---ccCCCCCCCCCCCCchhHHHHhcCCCccee-----------eeeec
Q 023530 203 Q--NTDFLVLARYMQPVPLQKEAYLGYKLLE---SLSSKGSLTSYFNMHMPKHMILTDKGCLCS-----------TRISQ 266 (281)
Q Consensus 203 ~--~~DlIVLAgYMrILs~~fl~~~~~riIN---SLLP~f~G~g~~g~~vh~a~l~~d~g~~~~-----------~~~~~ 266 (281)
+ .++|-||--.-|.+|-++.+++..+-|= ||||+.||+ ..+.|.++.||+-...| ++..|
T Consensus 74 ~~~gaelnvlpfcsqfip~ei~~ap~~~siiyhps~lp~hrga----sainwtli~gd~~~g~sifwaddgldtg~~llq 149 (881)
T KOG2452|consen 74 QALGAELNVLPFCSQFIPMEIISAPRHGSIIYHPSLLPRHRGA----SAINWTLIHGDKKGGFSIFWADDGLDTGDLLLQ 149 (881)
T ss_pred HhhcccccccchhhhccchhhcccccCCceeeccccCccccCc----cccceEEEeccccCceEEEeecCCccccchhhh
Confidence 5 8999999999999999999999876555 999999998 78888888887554444 33333
Q ss_pred ccccccccccc
Q 023530 267 GRKTCKLIPHN 277 (281)
Q Consensus 267 ~~~~~~~~~~~ 277 (281)
|+||..|..
T Consensus 150 --k~c~v~~~d 158 (881)
T KOG2452|consen 150 --KECEVLPDD 158 (881)
T ss_pred --hhcccCCCc
Confidence 788888754
No 74
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=97.27 E-value=0.0023 Score=48.04 Aligned_cols=65 Identities=17% Similarity=0.153 Sum_probs=45.8
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhh
Q 023530 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (281)
Q Consensus 44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~-~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~ 111 (281)
.+.+.-+|+||..+++.+.++++|+||..+.+.-.. ..+.+..+++++.. .+.+.+++.++.+.+
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~---~~~~~~~~~l~~l~~ 68 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH---IEDPNVAEALEELKR 68 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC---CCCHHHHHHHHHHHH
Confidence 456667899999999999999999999999775432 23345556666643 234666666665543
No 75
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.15 E-value=0.0022 Score=45.33 Aligned_cols=59 Identities=20% Similarity=0.200 Sum_probs=40.7
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 023530 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (281)
Q Consensus 44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~ 108 (281)
++++.=+|+||.++++++.|+++|+||..+.++.....+. .++.+.+.. .+.+.+.|++
T Consensus 1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~--~~v~~~ve~----~~~~~~~L~~ 59 (65)
T cd04882 1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGK--ALLIFRTED----IEKAIEVLQE 59 (65)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCe--EEEEEEeCC----HHHHHHHHHH
Confidence 3667789999999999999999999999988754322233 234444432 4555555544
No 76
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=97.12 E-value=0.0021 Score=46.48 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=31.7
Q ss_pred EEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeecc
Q 023530 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP 78 (281)
Q Consensus 43 ~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~ 78 (281)
..++|.-+|+||.+++|++.|+++|+||+.+-.+..
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~ 37 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADT 37 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEec
Confidence 357788999999999999999999999999976543
No 77
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=97.12 E-value=0.003 Score=41.06 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=30.9
Q ss_pred EEEEcCCCcchHHHHHHHHHhCCCeEeEeeeecc
Q 023530 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVP 78 (281)
Q Consensus 45 ltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~ 78 (281)
+++.++|++|+++++++.|+++|+||..+.+...
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~ 34 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTS 34 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEc
Confidence 4688999999999999999999999999998653
No 78
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=97.11 E-value=0.0034 Score=46.43 Aligned_cols=33 Identities=27% Similarity=0.306 Sum_probs=28.6
Q ss_pred EEEEcCCCcchHHHHHHHHHhCCCeEeEeeeec
Q 023530 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (281)
Q Consensus 45 ltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~ 77 (281)
+.+.-+|+||.+++|-+.++++|+||..+++.-
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp 34 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRP 34 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeee
Confidence 345568999999999999999999999997653
No 79
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=97.02 E-value=0.0027 Score=46.30 Aligned_cols=58 Identities=21% Similarity=0.174 Sum_probs=44.7
Q ss_pred CCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHh
Q 023530 51 DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (281)
Q Consensus 51 DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la 110 (281)
|+||++..|+..+..+|.||..++.......+...|.+.+..+ +...+.|...|+++.
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~--~~~i~~l~~Ql~Kli 58 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGD--DREIEQLVKQLEKLI 58 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES---CCHHHHHHHHHHCST
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeC--chhHHHHHHHHhccC
Confidence 7899999999999999999999998775556777777777753 346777888777654
No 80
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.81 E-value=0.013 Score=44.41 Aligned_cols=33 Identities=12% Similarity=0.158 Sum_probs=30.7
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeee
Q 023530 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (281)
Q Consensus 44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~ 76 (281)
++.|.++||||+.++|++.|+++|++|....-.
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~ 34 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFS 34 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEe
Confidence 688999999999999999999999999987765
No 81
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=96.74 E-value=0.0054 Score=54.83 Aligned_cols=67 Identities=18% Similarity=0.120 Sum_probs=51.2
Q ss_pred cccCCCCccCCCCCCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeC
Q 023530 23 KSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFD 93 (281)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p 93 (281)
+-..+.+.+++..+ ..+.|-+.-.||||+|..|++.|.++|+||-.++-......|.=.|.++++-|
T Consensus 133 riv~idg~~vd~~~----~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~~ 199 (208)
T TIGR00719 133 EITEINGFAIEFRG----EHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDKN 199 (208)
T ss_pred EEEEECCEEEEecC----CccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCCC
Confidence 34455666777666 55677788899999999999999999999999988754445665666777643
No 82
>PRK07334 threonine dehydratase; Provisional
Probab=96.72 E-value=0.011 Score=57.59 Aligned_cols=70 Identities=13% Similarity=0.019 Sum_probs=53.7
Q ss_pred CCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeecc---CCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 023530 36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP---EKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (281)
Q Consensus 36 ~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~---~~~g~F~mrlev~~p~~~~~~~~L~~~L~~l 109 (281)
-..++.+..|.|.+.||+|++++|++.|++.++||.+++.... ...+...+.+.+++.+ .++|.+-+..+
T Consensus 320 l~~~~y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d----~~~L~~vi~~L 392 (403)
T PRK07334 320 LVRAGRLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRD----AAHLQEVIAAL 392 (403)
T ss_pred HHhCCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCC----HHHHHHHHHHH
Confidence 3445567899999999999999999999999999999987542 1356777888888764 55555554444
No 83
>PRK05092 PII uridylyl-transferase; Provisional
Probab=96.47 E-value=0.0042 Score=66.82 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=36.2
Q ss_pred CcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeecc
Q 023530 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP 78 (281)
Q Consensus 39 ~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~ 78 (281)
.....+|.|.|+||||++++|+++|+++|+||.+....+.
T Consensus 840 s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~ 879 (931)
T PRK05092 840 SNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATY 879 (931)
T ss_pred CCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEc
Confidence 3355899999999999999999999999999999988864
No 84
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=96.33 E-value=0.019 Score=60.38 Aligned_cols=67 Identities=12% Similarity=0.060 Sum_probs=53.8
Q ss_pred cccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHh
Q 023530 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (281)
Q Consensus 40 ~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la 110 (281)
..+..|.|.+.||+|+++.||+++++.++||.+++.......+.+.+++.+++++ .++|..-+..+-
T Consensus 664 ~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~----~~~L~~l~~~L~ 730 (743)
T PRK10872 664 GYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYN----LQVLGRVLGKLN 730 (743)
T ss_pred eeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECC----HHHHHHHHHHHh
Confidence 3567899999999999999999999999999999886543357788899999875 566666555554
No 85
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.31 E-value=0.056 Score=42.24 Aligned_cols=69 Identities=17% Similarity=0.170 Sum_probs=49.2
Q ss_pred cEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccC-CCC--eEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhccc
Q 023530 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKN--VFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (281)
Q Consensus 42 ~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~-~~g--~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~ 116 (281)
+..+.+..+|+||-.+++-+.|+++|+|+..+++.-.. ..+ .||+.++.. .-+.++..++++.+.++..
T Consensus 14 ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~------~~~~~~~~l~~L~~~~~~~ 85 (90)
T cd04931 14 VISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKK------SAPALDPIIKSLRNDIGAT 85 (90)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC------CCHHHHHHHHHHHHHhCCC
Confidence 34555556999999999999999999999999985322 122 455444332 2367788888888777654
No 86
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.29 E-value=0.019 Score=41.82 Aligned_cols=60 Identities=12% Similarity=0.088 Sum_probs=38.9
Q ss_pred EEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 023530 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (281)
Q Consensus 45 ltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~-~~g~F~mrlev~~p~~~~~~~~L~~~L~~ 108 (281)
++|.=|||||-..++.+.+++ |.||++++..... ..+..+ +.++.+. ....+++.++|++
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~--v~ie~~~-~~~~~~i~~~L~~ 61 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVL--VGIQVPD-REDLAELKERLEA 61 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEE--EEEEeCC-HHHHHHHHHHHHH
Confidence 356779999999999999999 9999999775421 122233 3344443 2234455555543
No 87
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=96.14 E-value=0.025 Score=47.47 Aligned_cols=80 Identities=15% Similarity=0.131 Sum_probs=57.9
Q ss_pred ccccCCCCccCCCCCCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHH
Q 023530 22 FKSLKFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQ 101 (281)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~ 101 (281)
+|..-|||---.++ +.+.|.+.=.||.|+.+++-+.+|+.++||+.++|.+ |.+|.=...+.++......+.+.
T Consensus 57 YkD~vfpf~~m~k~-----ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~i-pl~g~Anvtlsi~~ssm~~~V~~ 130 (150)
T COG4492 57 YKDFVFPFYDMLKE-----RIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTI-PLQGRANVTLSIDTSSMEKDVDK 130 (150)
T ss_pred hccceeehhhcccc-----eEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEeccc-ccCceeeEEEEEEchhhhhhHHH
Confidence 45566777653322 4688889999999999999999999999999999976 56777666777765543334444
Q ss_pred HHHHHH
Q 023530 102 MDEDFF 107 (281)
Q Consensus 102 L~~~L~ 107 (281)
+-+.+.
T Consensus 131 ii~kl~ 136 (150)
T COG4492 131 IIEKLR 136 (150)
T ss_pred HHHHHh
Confidence 444443
No 88
>PRK03381 PII uridylyl-transferase; Provisional
Probab=96.03 E-value=0.033 Score=58.94 Aligned_cols=56 Identities=14% Similarity=0.124 Sum_probs=42.5
Q ss_pred cccCCCCccCC-CCCCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeecc
Q 023530 23 KSLKFPGEPIE-SSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP 78 (281)
Q Consensus 23 ~~~~~~~~~~~-~~~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~ 78 (281)
+.-.|+..|.. ..........+|+|.|+||||++++||++|+++|+||.+..-++.
T Consensus 687 ~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~ 743 (774)
T PRK03381 687 PVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATL 743 (774)
T ss_pred ccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeec
Confidence 34445544432 222333356899999999999999999999999999999998774
No 89
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=95.99 E-value=0.04 Score=57.77 Aligned_cols=66 Identities=15% Similarity=0.118 Sum_probs=52.9
Q ss_pred cccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHh
Q 023530 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (281)
Q Consensus 40 ~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la 110 (281)
..+..|.|.+.||+|+++.|++++++.++||.+++.... ..+.+.+.+.+++.+ .++|..-+..+-
T Consensus 624 ~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~ieV~~----~~~L~~i~~~Lr 689 (702)
T PRK11092 624 EFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEK-DGRVYSAFIRLTARD----RVHLANIMRKIR 689 (702)
T ss_pred eeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEc-CCCEEEEEEEEEECC----HHHHHHHHHHHh
Confidence 456789999999999999999999999999999997543 246778888888874 556666555554
No 90
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.94 E-value=0.048 Score=40.13 Aligned_cols=63 Identities=19% Similarity=0.302 Sum_probs=46.4
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeE-EEEEEEEeCCC---CCCHHHHHHHHHHHh
Q 023530 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVF-YSRSEFIFDPI---KWPREQMDEDFFKLS 110 (281)
Q Consensus 44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F-~mrlev~~p~~---~~~~~~L~~~L~~la 110 (281)
++||.|||+.|+=.++.+.+.+-|.+|..-+..++ |.. |..+ +-+|.. .+.-+.|+..|.+.|
T Consensus 2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTD---GkWCyiv~-wVv~~~~~~~~rW~lLK~RL~~~C 68 (69)
T cd04894 2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDSTD---GRWCYIVF-WVVPRPPSIKVRWDLLKNRLMSAC 68 (69)
T ss_pred EEEEeCCCccCcccHHHHHHHHhceEEEecccccC---CcEEEEEE-EEecCCCCCcccHHHHHHHHHhcC
Confidence 68999999999999999999999999998877654 533 4333 333431 355677887776654
No 91
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=95.85 E-value=0.011 Score=43.21 Aligned_cols=35 Identities=26% Similarity=0.249 Sum_probs=30.3
Q ss_pred cEEEEEEcC----CCcchHHHHHHHHHhCCCeEeEeeee
Q 023530 42 HGIHVFHCP----DEVGIVAKLSECIASRGGNILAADVF 76 (281)
Q Consensus 42 ~~iltV~G~----DrpGIVa~VS~~La~~giNI~dl~q~ 76 (281)
-..|+|.|+ |.||+++++++.|+++|+||..++++
T Consensus 6 ~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~isS~ 44 (65)
T PF13840_consen 6 WAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMISSE 44 (65)
T ss_dssp EEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEEES
T ss_pred EEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEEEe
Confidence 357888888 89999999999999999999999853
No 92
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=95.81 E-value=0.05 Score=56.87 Aligned_cols=66 Identities=12% Similarity=0.067 Sum_probs=52.8
Q ss_pred cccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHh
Q 023530 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (281)
Q Consensus 40 ~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la 110 (281)
..++.|.|.+.||+|+++.|++++++.++||.+++.... ..+.+.+.+.+.+.+ .++|..-+..+-
T Consensus 608 ~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~-~~~~~~~~~~ieV~~----~~~L~~ii~~L~ 673 (683)
T TIGR00691 608 RFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTY-GKREAILNITVEIKN----YKHLLKIMLKIK 673 (683)
T ss_pred eeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEc-CCCEEEEEEEEEECC----HHHHHHHHHHHh
Confidence 456789999999999999999999999999999998653 246778888888874 556665555543
No 93
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=95.78 E-value=0.053 Score=40.37 Aligned_cols=62 Identities=18% Similarity=0.228 Sum_probs=40.2
Q ss_pred EEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCC-CCeEEEEEEEEeCCCCCCHHHHHHHHHHHhh
Q 023530 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (281)
Q Consensus 45 ltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~-~g~F~mrlev~~p~~~~~~~~L~~~L~~la~ 111 (281)
+.+.-+|+||-.+++-+.++++|+|+..+++.-.+. .+.|.--++++.. .+.++++++++.+
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~-----~~~~~~~l~~L~~ 65 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVD-----RGDLDQLISSLRR 65 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcC-----hHHHHHHHHHHHH
Confidence 334458999999999999999999999999854222 2223222444432 2346666665543
No 94
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.77 E-value=0.023 Score=55.72 Aligned_cols=65 Identities=15% Similarity=0.103 Sum_probs=47.8
Q ss_pred CcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Q 023530 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKL 109 (281)
Q Consensus 39 ~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~l 109 (281)
...++.|.+.-.|+||+++.||+.|+++|+||..+.-... .+.=.|.++++-+ ..+++.+.++++
T Consensus 335 ~~~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~--~~~A~~iie~D~~----~~~~~~~~i~~i 399 (409)
T PRK11790 335 HPGGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTD--GEIGYVVIDVDAD----YAEEALDALKAI 399 (409)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccC--CCEEEEEEEeCCC----CcHHHHHHHHcC
Confidence 3477899999999999999999999999999999877543 2443455555532 244666666654
No 95
>PRK05092 PII uridylyl-transferase; Provisional
Probab=95.48 E-value=0.071 Score=57.54 Aligned_cols=70 Identities=11% Similarity=0.027 Sum_probs=48.6
Q ss_pred CcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEE-EEEEEeCCCC--CC---HHHHHHHHHHHh
Q 023530 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYS-RSEFIFDPIK--WP---REQMDEDFFKLS 110 (281)
Q Consensus 39 ~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~m-rlev~~p~~~--~~---~~~L~~~L~~la 110 (281)
......|+|.|+||||+.+.|+++|+.+|+||.+.+-++.. .| |.+ .+.|.-+... .+ .+.|++.|+...
T Consensus 729 ~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~-dg-~alD~F~V~~~~g~~~~~~~~~~~l~~~L~~~l 804 (931)
T PRK05092 729 ARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTT-DG-RALDTFWIQDAFGRDEDEPRRLARLAKAIEDAL 804 (931)
T ss_pred CCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEec-CC-eEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHH
Confidence 34567999999999999999999999999999999987642 33 322 2334322210 12 456777776554
No 96
>PRK05007 PII uridylyl-transferase; Provisional
Probab=95.46 E-value=0.03 Score=60.06 Aligned_cols=52 Identities=15% Similarity=0.179 Sum_probs=40.9
Q ss_pred CCCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeecc--CCCCeEEE
Q 023530 35 SVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP--EKKNVFYS 86 (281)
Q Consensus 35 ~~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~--~~~g~F~m 86 (281)
.........+|.|.++||||+++.|+++|++.|+||....-.+. .-...|+.
T Consensus 801 d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV 854 (884)
T PRK05007 801 LPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFIL 854 (884)
T ss_pred ccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEE
Confidence 33444577899999999999999999999999999999776653 12336664
No 97
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=95.39 E-value=0.026 Score=52.12 Aligned_cols=72 Identities=19% Similarity=0.158 Sum_probs=55.7
Q ss_pred ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhc
Q 023530 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (281)
Q Consensus 41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~ 114 (281)
.+.+|.+.-.|-||++..|++.||.+|.||..+---.......|.|.+.+.-.+ .-+++.++.++++-.-+.
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd--~VveQa~rQiedlVnV~a 147 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTD--GVVEQARRQIEDLVNVYA 147 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccH--HHHHHHHHHHHHhhhhhe
Confidence 457889999999999999999999999999998765444566888888887443 236777777777654443
No 98
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=95.38 E-value=0.074 Score=51.27 Aligned_cols=71 Identities=15% Similarity=-0.023 Sum_probs=46.6
Q ss_pred CCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeec---cCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 023530 37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV---PEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (281)
Q Consensus 37 ~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~---~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~ 108 (281)
......+.+++.=+||||..+++++.++++|+||+++.... ....+.-...+.++... ....+++.+.|++
T Consensus 300 ~~~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~-~~~~~~i~~~L~~ 373 (380)
T TIGR01127 300 VKSGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRG-KEHLDEILKILRD 373 (380)
T ss_pred HhCCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCC-HHHHHHHHHHHHH
Confidence 33456678999999999999999999999999999996542 11123333344444432 1233445555544
No 99
>PRK04374 PII uridylyl-transferase; Provisional
Probab=95.36 E-value=0.045 Score=58.72 Aligned_cols=58 Identities=17% Similarity=0.140 Sum_probs=44.3
Q ss_pred cccccCCCCcc-CCCCCCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeecc
Q 023530 21 SFKSLKFPGEP-IESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP 78 (281)
Q Consensus 21 ~~~~~~~~~~~-~~~~~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~ 78 (281)
+.+.-.|+..| |...........+|+|.++||||+.+.||++|+++|+||.+..-++.
T Consensus 774 ~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~ 832 (869)
T PRK04374 774 PRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATF 832 (869)
T ss_pred cccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEec
Confidence 44555666666 12222333467799999999999999999999999999999887764
No 100
>PRK03059 PII uridylyl-transferase; Provisional
Probab=95.04 E-value=0.17 Score=54.33 Aligned_cols=56 Identities=14% Similarity=0.116 Sum_probs=42.8
Q ss_pred cccCCCCccCC-CCCCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeecc
Q 023530 23 KSLKFPGEPIE-SSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP 78 (281)
Q Consensus 23 ~~~~~~~~~~~-~~~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~ 78 (281)
+.-.|+..|.- ....+.....+|.|.++||||+.+.|+++|+++|+||.+..-++.
T Consensus 766 ~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~ 822 (856)
T PRK03059 766 QVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTL 822 (856)
T ss_pred cccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeec
Confidence 44456555533 223334467799999999999999999999999999999877764
No 101
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=94.91 E-value=0.28 Score=42.52 Aligned_cols=73 Identities=21% Similarity=0.227 Sum_probs=54.4
Q ss_pred ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcc
Q 023530 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (281)
Q Consensus 41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l 115 (281)
++.++++.=.|.||.++.++..++++|.||..+.---....+ ..|+++-...+....+++.+.|..+-+-+++
T Consensus 3 m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~--~SRiTivv~g~~~~~EQi~kQL~kLidV~kV 75 (163)
T COG0440 3 MRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPG--LSRITIVVSGDEQVLEQIIKQLNKLIDVLKV 75 (163)
T ss_pred ceEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCC--ceEEEEEEcCCcchHHHHHHHHHhhccceeE
Confidence 667889999999999999999999999999998775433334 3355544433234578888888888765554
No 102
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=94.88 E-value=0.17 Score=36.00 Aligned_cols=65 Identities=18% Similarity=0.134 Sum_probs=43.0
Q ss_pred EEEEc-CCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhc
Q 023530 45 HVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (281)
Q Consensus 45 ltV~G-~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~ 114 (281)
+++.| +|++|+.+++.+.|+++|+||.-+.|.... .+ .+.+.+.++. .+.+...+.+.+..++++
T Consensus 4 v~v~~~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~-~~--~~~is~~v~~--~d~~~~~~~l~~~~~~~~ 69 (75)
T cd04913 4 ITLRGVPDKPGVAAKIFGALAEANINVDMIVQNVSR-DG--TTDISFTVPK--SDLKKALAVLEKLKKELG 69 (75)
T ss_pred EEECCCCCCCcHHHHHHHHHHHcCCeEEEEEeCCCC-CC--cEEEEEEecH--HHHHHHHHHHHHHHHHcC
Confidence 44443 689999999999999999999988875432 22 2345555553 234555566666555554
No 103
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=94.85 E-value=0.059 Score=57.69 Aligned_cols=51 Identities=16% Similarity=0.200 Sum_probs=40.3
Q ss_pred CCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccC--CCCeEEE
Q 023530 36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE--KKNVFYS 86 (281)
Q Consensus 36 ~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~--~~g~F~m 86 (281)
........+|.|.++||||+++.|+++|++.|++|....-.+.. -...|+.
T Consensus 777 n~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv 829 (854)
T PRK01759 777 NEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFIL 829 (854)
T ss_pred cCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEE
Confidence 33445678999999999999999999999999999997766531 1235664
No 104
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=94.84 E-value=0.051 Score=55.02 Aligned_cols=75 Identities=16% Similarity=0.159 Sum_probs=51.2
Q ss_pred CCCccCCCCCCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHH
Q 023530 27 FPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDF 106 (281)
Q Consensus 27 ~~~~~~~~~~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L 106 (281)
..+-+++.+. ..+.+-+...|+||+|+.|++.|+++++||-.++......++.-.|.++++-+ .+ +++-+.+
T Consensus 441 ing~~v~~~~----~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~~---v~-~~~l~~i 512 (526)
T PRK13581 441 IDGYRVDAKP----EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDDP---VP-EEVLEEL 512 (526)
T ss_pred ECCEEEEeeC----CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCCC---CC-HHHHHHH
Confidence 4444455444 45666677799999999999999999999999987654345566666666633 23 4444445
Q ss_pred HHH
Q 023530 107 FKL 109 (281)
Q Consensus 107 ~~l 109 (281)
.++
T Consensus 513 ~~~ 515 (526)
T PRK13581 513 RAL 515 (526)
T ss_pred hcC
Confidence 443
No 105
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=94.82 E-value=0.16 Score=53.05 Aligned_cols=67 Identities=12% Similarity=0.099 Sum_probs=54.7
Q ss_pred CcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHh
Q 023530 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (281)
Q Consensus 39 ~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la 110 (281)
....+.|.|.+.||+|+++.|+++|++.++||..+++..+ ..+.+.|.+.+.+.+ ..+|..-+..+-
T Consensus 624 ~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~-~~~~~~~~~~i~v~n----~~~L~~i~~~l~ 690 (701)
T COG0317 624 QVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSD-KDQFATMQFTIEVKN----LNHLGRVLARLK 690 (701)
T ss_pred cceEEEEEEEEccccchHHHHHHHHHhCCCceEEeecccc-CCceEEEEEEEEECc----HHHHHHHHHHHh
Confidence 4467889999999999999999999999999999999765 456778888888875 556666555554
No 106
>PRK08818 prephenate dehydrogenase; Provisional
Probab=94.61 E-value=0.18 Score=49.12 Aligned_cols=51 Identities=16% Similarity=0.057 Sum_probs=36.4
Q ss_pred ccEEEEEEcC-CCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEe
Q 023530 41 THGIHVFHCP-DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIF 92 (281)
Q Consensus 41 ~~~iltV~G~-DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~ 92 (281)
..+.|.+.=+ |+||.+++|++.|+++|+||.+++..... .+.|..++++.-
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r-~~~y~f~i~~~~ 345 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTP-AGELHFRIGFEP 345 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEeccc-CceEEEEEEEec
Confidence 4455555566 99999999999999999999999983222 233333455553
No 107
>PRK08198 threonine dehydratase; Provisional
Probab=94.59 E-value=0.11 Score=50.42 Aligned_cols=44 Identities=25% Similarity=0.192 Sum_probs=37.7
Q ss_pred CCCCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeec
Q 023530 34 SSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (281)
Q Consensus 34 ~~~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~ 77 (281)
.+.......+.+.|.=+|+||..+++.+.+++.|+||+++++.-
T Consensus 319 ~gl~~~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~ 362 (404)
T PRK08198 319 RGLVAAGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDR 362 (404)
T ss_pred hhhhhcCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEE
Confidence 34445566789999999999999999999999999999998853
No 108
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.52 E-value=0.19 Score=41.03 Aligned_cols=61 Identities=7% Similarity=0.054 Sum_probs=40.7
Q ss_pred EEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccC-CCC--eEEEEEEEEeCCCCCCHHHHHHHHHHHh
Q 023530 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKN--VFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (281)
Q Consensus 43 ~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~-~~g--~F~mrlev~~p~~~~~~~~L~~~L~~la 110 (281)
..+.+.-+|+||-.+.+-+.++++|+|+..+++.-.. ..+ .||+ +++.. .++++..++.+.
T Consensus 42 tSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfI--dieg~-----~~~~~~aL~~L~ 105 (115)
T cd04930 42 ATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLV--RCEVH-----RSDLLQLISSLR 105 (115)
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEE--EEEeC-----HHHHHHHHHHHH
Confidence 3444445999999999999999999999999985421 122 4454 44432 224666665554
No 109
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=94.49 E-value=0.052 Score=54.91 Aligned_cols=64 Identities=14% Similarity=0.102 Sum_probs=46.9
Q ss_pred CCCCccCCCCCCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeC
Q 023530 26 KFPGEPIESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFD 93 (281)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p 93 (281)
+..+-+++.+. ..+.+-+...|+||+|+.|++.|+++++||-.++......+|.-.|.++++-+
T Consensus 439 ~ing~~v~~~~----~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~~ 502 (525)
T TIGR01327 439 EIDGFHVDLEP----EGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQP 502 (525)
T ss_pred EECCEEEEEec----CccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCCC
Confidence 44455555444 44566667799999999999999999999999887654445666667777643
No 110
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.41 E-value=0.23 Score=37.25 Aligned_cols=58 Identities=21% Similarity=0.271 Sum_probs=40.6
Q ss_pred EEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCC-CC--eEEEEEEEEeCCCCCCHHHHHHHHHHHhh
Q 023530 47 FHCPDEVGIVAKLSECIASRGGNILAADVFVPEK-KN--VFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (281)
Q Consensus 47 V~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~-~g--~F~mrlev~~p~~~~~~~~L~~~L~~la~ 111 (281)
+.-+|+||-.+++-+.++++|+|+..+++.-... .+ .||+.+ +.. .+.++.+++++.+
T Consensus 5 ~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~--e~~-----~~~i~~~l~~l~~ 65 (74)
T cd04929 5 FSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDC--ECD-----QRRLDELVQLLKR 65 (74)
T ss_pred EEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE--EcC-----HHHHHHHHHHHHH
Confidence 3348999999999999999999999999864222 22 455443 322 2367777776654
No 111
>PRK11899 prephenate dehydratase; Provisional
Probab=94.13 E-value=0.41 Score=44.88 Aligned_cols=65 Identities=14% Similarity=0.102 Sum_probs=43.9
Q ss_pred cEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccC-CCC--eEEEEEEEEeCCCCCCHHHHHHHHHHHhh
Q 023530 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKN--VFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (281)
Q Consensus 42 ~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~-~~g--~F~mrlev~~p~~~~~~~~L~~~L~~la~ 111 (281)
+..+.+.-+|+||-.+++-+.|+++|+|+..+++.=.. ..+ .|+ ++++. ..+-..++++|+++.+
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~--id~eg---~~~d~~v~~aL~~l~~ 261 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFY--ADIEG---HPEDRNVALALEELRF 261 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEE--EEEEC---CCCCHHHHHHHHHHHH
Confidence 33333444899999999999999999999999985321 122 344 34432 2234567888888754
No 112
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=94.05 E-value=2.9 Score=34.78 Aligned_cols=93 Identities=15% Similarity=0.088 Sum_probs=58.3
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeE-EEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccceeeee
Q 023530 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVF-YSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRV 122 (281)
Q Consensus 44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F-~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~~~~~~ 122 (281)
-|++.-..|||=.+.+++.|.++|+||..++- .++|.| ..||.++-| ++-.+.|++. |.. +++
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~ti---Adt~dFGIiRmvV~~~------d~A~~~Lee~----gF~---Vr~ 68 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTI---ADTGDFGIIRMVVDRP------DEAHSVLEEA----GFT---VRE 68 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEe---ccccCcceEEEEcCCh------HHHHHHHHHC----CcE---EEe
Confidence 47788899999999999999999999999876 347777 457766633 3345555543 332 222
Q ss_pred cCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCee
Q 023530 123 PDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVE 157 (281)
Q Consensus 123 ~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~e 157 (281)
.+ =+||=+--....|..+++...+-+++.+
T Consensus 69 ~d-----VlaVEmeD~PG~l~~I~~vl~d~diNld 98 (142)
T COG4747 69 TD-----VLAVEMEDVPGGLSRIAEVLGDADINLD 98 (142)
T ss_pred ee-----EEEEEecCCCCcHHHHHHHHhhcCcCce
Confidence 22 1344333333345556555555555444
No 113
>PRK06382 threonine dehydratase; Provisional
Probab=93.92 E-value=0.25 Score=48.26 Aligned_cols=71 Identities=17% Similarity=0.079 Sum_probs=46.8
Q ss_pred CCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeec---cCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 023530 37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV---PEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (281)
Q Consensus 37 ~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~---~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~ 108 (281)
........++|.=+|+||.++++++.|+++|+||+++.... ....+.-.+.+.++..+ ....+++.+.|++
T Consensus 325 ~~~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~-~~~~~~v~~~L~~ 398 (406)
T PRK06382 325 ENLGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRG-QDHLDRILNALRE 398 (406)
T ss_pred HhcCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCC-HHHHHHHHHHHHH
Confidence 34456788999999999999999999999999999987641 11223323344454431 1123355555544
No 114
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=93.85 E-value=0.48 Score=51.15 Aligned_cols=39 Identities=13% Similarity=0.163 Sum_probs=35.3
Q ss_pred cccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeecc
Q 023530 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP 78 (281)
Q Consensus 40 ~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~ 78 (281)
....+|.|.++||||+.+.|+++|+++|+||.+..-.+.
T Consensus 812 ~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~ 850 (895)
T PRK00275 812 RPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATL 850 (895)
T ss_pred CCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEec
Confidence 356799999999999999999999999999999887764
No 115
>PRK05007 PII uridylyl-transferase; Provisional
Probab=93.69 E-value=0.34 Score=52.15 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=37.5
Q ss_pred CcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeE
Q 023530 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVF 84 (281)
Q Consensus 39 ~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F 84 (281)
......|+|.++||||+.+.|+++|+.+|+||.+..-++.. .|..
T Consensus 698 ~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~-dg~a 742 (884)
T PRK05007 698 TRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSR-DGMA 742 (884)
T ss_pred CCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcC-CCeE
Confidence 33567999999999999999999999999999999866542 3543
No 116
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=93.64 E-value=0.64 Score=42.29 Aligned_cols=80 Identities=26% Similarity=0.305 Sum_probs=55.0
Q ss_pred eeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCCh---------hHHHHHHhCCCCEEEeCCCC-CChH-HH
Q 023530 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNS---------HVIRFLERHGIPYHYLCAKE-NERE-EE 197 (281)
Q Consensus 129 ~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a---------~~~~~A~~~gIP~~~i~~k~-~~~e-~~ 197 (281)
+|++.|.||+--...|+..+.+.| .+|..+++=+|..+++ .+...|+..|||........ .++| ++
T Consensus 1 mk~~aL~SGGKDS~~Al~~a~~~G---~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g~~e~eve~ 77 (223)
T COG2102 1 MKVIALYSGGKDSFYALYLALEEG---HEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSGEEEREVEE 77 (223)
T ss_pred CcEEEEEecCcHHHHHHHHHHHcC---CeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCccchhhHHH
Confidence 478889998843356788888887 4787777666554432 24567899999998887333 1223 56
Q ss_pred HHHHHh--CCCEEEEe
Q 023530 198 LLELVQ--NTDFLVLA 211 (281)
Q Consensus 198 l~~~L~--~~DlIVLA 211 (281)
+.++|+ ++|.||.-
T Consensus 78 L~~~l~~l~~d~iv~G 93 (223)
T COG2102 78 LKEALRRLKVDGIVAG 93 (223)
T ss_pred HHHHHHhCcccEEEEc
Confidence 777787 78888763
No 117
>PRK06349 homoserine dehydrogenase; Provisional
Probab=93.47 E-value=0.39 Score=47.33 Aligned_cols=67 Identities=10% Similarity=-0.034 Sum_probs=46.8
Q ss_pred CcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHh
Q 023530 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (281)
Q Consensus 39 ~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la 110 (281)
...+|.|.+...|+||.+++|++.|+++|+||..+.|.... .+.-.+.+..+ ..+..++++.++++.
T Consensus 345 ~~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~-~~~~~ivivT~----~~~e~~l~~~i~~L~ 411 (426)
T PRK06349 345 IESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAG-GEGAEIVIVTH----ETSEAALRAALAAIE 411 (426)
T ss_pred hceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCC-CCceeEEEEEE----eCCHHHHHHHHHHHh
Confidence 44679999999999999999999999999999999886432 12212222222 224456666665554
No 118
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=93.46 E-value=0.39 Score=51.49 Aligned_cols=50 Identities=12% Similarity=0.145 Sum_probs=38.6
Q ss_pred cccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEE
Q 023530 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEF 90 (281)
Q Consensus 40 ~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev 90 (281)
.....|+|.++||||+.+.|+++|+.+|+||.+..-++. ..|.-.=.+.|
T Consensus 675 ~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~-~~g~alD~F~V 724 (854)
T PRK01759 675 RGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITS-QDGYVLDSFIV 724 (854)
T ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEc-cCCEEEEEEEE
Confidence 355689999999999999999999999999999886552 24443333334
No 119
>PRK06545 prephenate dehydrogenase; Validated
Probab=93.25 E-value=0.31 Score=46.75 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=33.6
Q ss_pred cccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeee
Q 023530 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (281)
Q Consensus 40 ~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~ 76 (281)
...|.|.|.-|||||.+++|++.|++.|+||.|+.-.
T Consensus 288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~ 324 (359)
T PRK06545 288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRIL 324 (359)
T ss_pred CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceee
Confidence 3668899999999999999999999999999998763
No 120
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.11 E-value=0.53 Score=35.26 Aligned_cols=32 Identities=13% Similarity=0.099 Sum_probs=27.8
Q ss_pred EEEE--E-cCCCcchHHHHHHHHHhCCCeEeEeee
Q 023530 44 IHVF--H-CPDEVGIVAKLSECIASRGGNILAADV 75 (281)
Q Consensus 44 iltV--~-G~DrpGIVa~VS~~La~~giNI~dl~q 75 (281)
.|++ . .++++|..++|-+.|+++|+||.-+.|
T Consensus 3 ~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~~ 37 (75)
T cd04932 3 LVTLKSPNMLHAQGFLAKVFGILAKHNISVDLITT 37 (75)
T ss_pred EEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEee
Confidence 4565 2 478899999999999999999999987
No 121
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=93.05 E-value=0.89 Score=30.95 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=30.1
Q ss_pred EEEEEcC---CCcchHHHHHHHHHhCCCeEeEeeeec
Q 023530 44 IHVFHCP---DEVGIVAKLSECIASRGGNILAADVFV 77 (281)
Q Consensus 44 iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q~~ 77 (281)
.|++.|. +++|+++++.+.|+++++++.-..|..
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 5788776 889999999999999999999998843
No 122
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=93.00 E-value=1.3 Score=47.44 Aligned_cols=102 Identities=15% Similarity=0.133 Sum_probs=72.8
Q ss_pred ccEEEEEEcC---CCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccc
Q 023530 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (281)
Q Consensus 41 ~~~iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~ 117 (281)
.-.+|+++|. +++|+.+++-+.|++.|+||.-++|... +. .+.+-++ .++..++++.+-++|-.
T Consensus 395 ~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~IsqgsS---e~---~Is~vV~-----~~d~~~al~~LH~~f~~-- 461 (819)
T PRK09436 395 NLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQGSS---ER---SISVVID-----NDDATKALRACHQSFFL-- 461 (819)
T ss_pred CEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEeccc---cc---eEEEEEc-----HHHHHHHHHHHHHHHhc--
Confidence 5578999997 7899999999999999999999998542 21 2233333 34567777777777643
Q ss_pred eeeeecCCCCCeeEEEEeeCC-hhHHHHHHHhhh----cCCCCeeEEEEE
Q 023530 118 SVVRVPDIDPKYKVAVLASKQ-EHCLVDFLYGWQ----EGKLPVEITCVI 162 (281)
Q Consensus 118 ~~~~~~~~~~~~rIavl~Sg~-GsnL~aLl~~~~----~g~l~~eI~~Vi 162 (281)
..++++|++++-|+ |..+-.++...+ ...+..+|++|.
T Consensus 462 -------~~~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~ 504 (819)
T PRK09436 462 -------SDQVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIA 504 (819)
T ss_pred -------ccccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEE
Confidence 24678999999998 788877775422 123456777763
No 123
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=92.86 E-value=0.73 Score=45.83 Aligned_cols=69 Identities=16% Similarity=0.035 Sum_probs=46.5
Q ss_pred CCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccce---eeeecCCCCCeeEEEEeeCChhHHHHHHHhhhc
Q 023530 80 KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS---VVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQE 151 (281)
Q Consensus 80 ~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~~---~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~ 151 (281)
..|.|...++-.-|+ ...+|...|+++-++|..+.. ..+.+-+..+.+|+|..|.+|..++|++..+++
T Consensus 87 ~rG~YQi~~~~~~p~---G~G~L~~~~E~lK~kL~aEGlFd~~~KkpLP~~p~~IGVITS~tgAairDIl~~~~r 158 (440)
T COG1570 87 PRGDYQIVAESMEPA---GLGALYLAFEQLKAKLAAEGLFDPERKKPLPFFPKKIGVITSPTGAALRDILHTLSR 158 (440)
T ss_pred CCCceEEEEecCCcC---ChhHHHHHHHHHHHHHHhCCCcChhhcCCCCCCCCeEEEEcCCchHHHHHHHHHHHh
Confidence 467776655544454 467888888887666554431 122223344679999999999999999987654
No 124
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.84 E-value=0.24 Score=52.50 Aligned_cols=55 Identities=20% Similarity=0.265 Sum_probs=44.2
Q ss_pred cccCCCCcc-CCCCCCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeec
Q 023530 23 KSLKFPGEP-IESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (281)
Q Consensus 23 ~~~~~~~~~-~~~~~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~ 77 (281)
++--||..| ++-.+......+++.|.|.||||++++|++.|++++++|....-.+
T Consensus 771 ~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT 826 (867)
T COG2844 771 KLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITT 826 (867)
T ss_pred ccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeecc
Confidence 334566655 4445555557899999999999999999999999999999987665
No 125
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=92.80 E-value=0.49 Score=51.06 Aligned_cols=50 Identities=12% Similarity=0.075 Sum_probs=39.1
Q ss_pred ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEE
Q 023530 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI 91 (281)
Q Consensus 41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~ 91 (281)
.-..|+|.++||||+-+.++.+|+.+|+||.+.+-++. ..|...=.+.|.
T Consensus 703 ~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt-~dg~alD~F~V~ 752 (895)
T PRK00275 703 GGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITS-SSQFTLDTYIVL 752 (895)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEc-CCCeEEEEEEEe
Confidence 45689999999999999999999999999999987654 245433344443
No 126
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=92.69 E-value=0.53 Score=40.79 Aligned_cols=48 Identities=21% Similarity=-0.036 Sum_probs=34.2
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEE
Q 023530 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI 91 (281)
Q Consensus 44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~ 91 (281)
.++..-.+.|||+|+|++.++++||+|.+.-..-...++.=+.++..+
T Consensus 97 ei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte 144 (167)
T COG2150 97 EIYPEDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTE 144 (167)
T ss_pred EEEeccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEEEe
Confidence 344445788999999999999999999987664322344334455555
No 127
>PRK04374 PII uridylyl-transferase; Provisional
Probab=92.64 E-value=0.6 Score=50.27 Aligned_cols=70 Identities=14% Similarity=0.226 Sum_probs=48.0
Q ss_pred CCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCC---CHHHHHHHHHHH
Q 023530 38 PTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKW---PREQMDEDFFKL 109 (281)
Q Consensus 38 ~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~---~~~~L~~~L~~l 109 (281)
+......++|.++||||+-+.|+.+|+.+|+||.+.+-++.. .|.-.=.+.|.-+. +. ....+++++...
T Consensus 686 ~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~-~g~~ld~f~V~~~~-~~~~~~~~~i~~~l~~~ 758 (869)
T PRK04374 686 PDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAP-HDAIFDVFEVLPQD-TYADGDPQRLAAALRQV 758 (869)
T ss_pred cCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcC-CCEEEEEEEEeCCC-CCChHHHHHHHHHHHHH
Confidence 334557899999999999999999999999999999887642 45433344444333 21 133455555543
No 128
>PRK03059 PII uridylyl-transferase; Provisional
Probab=92.56 E-value=0.8 Score=49.22 Aligned_cols=52 Identities=15% Similarity=0.148 Sum_probs=40.0
Q ss_pred CcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEE
Q 023530 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI 91 (281)
Q Consensus 39 ~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~ 91 (281)
......|+|.++||||+-+.+|.+|+.+|+||.+.+-++.. .|.-.=.+.|.
T Consensus 675 ~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~-~g~~ld~f~V~ 726 (856)
T PRK03059 675 AGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTR-HGYALDTFQVL 726 (856)
T ss_pred CCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcC-CCeEEEEEEEe
Confidence 33556899999999999999999999999999999887642 44322234443
No 129
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=92.52 E-value=0.39 Score=45.58 Aligned_cols=73 Identities=21% Similarity=0.228 Sum_probs=46.5
Q ss_pred CCeeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHH--Hh
Q 023530 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLEL--VQ 203 (281)
Q Consensus 127 ~~~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~--L~ 203 (281)
+++||||+++|+ |+.+..-+.+ .. ..++++|+.-. ++..++++|+++|+|+.+- .. +++++. .+
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~--~~--~velvAVvdid---~es~gla~A~~~Gi~~~~~-----~i-e~LL~~~~~~ 69 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILR--SE--HLEPGAMVGID---PESDGLARARRLGVATSAE-----GI-DGLLAMPEFD 69 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhc--CC--CcEEEEEEeCC---hhhHHHHHHHHcCCCcccC-----CH-HHHHhCcCCC
Confidence 468999999998 5553222222 22 36899888765 4556778899999987651 11 234432 12
Q ss_pred CCCEEEEec
Q 023530 204 NTDFLVLAR 212 (281)
Q Consensus 204 ~~DlIVLAg 212 (281)
++|+|+.|-
T Consensus 70 dIDiVf~AT 78 (302)
T PRK08300 70 DIDIVFDAT 78 (302)
T ss_pred CCCEEEECC
Confidence 678887764
No 130
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=92.39 E-value=0.68 Score=49.56 Aligned_cols=39 Identities=21% Similarity=0.190 Sum_probs=35.2
Q ss_pred cccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeecc
Q 023530 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP 78 (281)
Q Consensus 40 ~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~ 78 (281)
.....|+|.++||||+.+.|+++|+.+|+||.+.+-++.
T Consensus 666 ~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt 704 (850)
T TIGR01693 666 SGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTT 704 (850)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEe
Confidence 456789999999999999999999999999999988743
No 131
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=92.36 E-value=1.2 Score=31.24 Aligned_cols=33 Identities=21% Similarity=0.122 Sum_probs=29.3
Q ss_pred EEEEEcC---CCcchHHHHHHHHHhCCCeEeEeeee
Q 023530 44 IHVFHCP---DEVGIVAKLSECIASRGGNILAADVF 76 (281)
Q Consensus 44 iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q~ 76 (281)
.+++.|. |.+|+.+++.+.|++.|+|+.-+.|.
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~ 38 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQG 38 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEec
Confidence 5778884 88999999999999999999988874
No 132
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=92.35 E-value=1.4 Score=40.06 Aligned_cols=102 Identities=21% Similarity=0.161 Sum_probs=62.5
Q ss_pred eeEEEEeeCCh-hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCC---------hhHHHHHHhCCCCEEEeCCCC-CChH-H
Q 023530 129 YKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGPN---------SHVIRFLERHGIPYHYLCAKE-NERE-E 196 (281)
Q Consensus 129 ~rIavl~Sg~G-snL~aLl~~~~~g~l~~eI~~Visn~pd~~~---------a~~~~~A~~~gIP~~~i~~k~-~~~e-~ 196 (281)
||++++.||+- |++ +++.+.+. .+|+++++..++..+ .-+...|+..|||.+.+.... ...+ +
T Consensus 1 Mkv~vl~SGGKDS~l-Al~~~~~~----~~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~~~~~~e~~~~ 75 (222)
T TIGR00289 1 MKVAVLYSGGKDSIL-ALYKALEE----HEVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLYTSGEEEKEVE 75 (222)
T ss_pred CeEEEEecCcHHHHH-HHHHHHHc----CeeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEEcCCchhHHHH
Confidence 48999999984 554 56655554 377777776654211 235678999999988766222 1112 4
Q ss_pred HHHHHHh--CCCEEEEecccccCChhHHhhhcCCcee-----ccCCCCCC
Q 023530 197 ELLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE-----SLSSKGSL 239 (281)
Q Consensus 197 ~l~~~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN-----SLLP~f~G 239 (281)
++.+.++ ++|-||. +=|.+.. -+.|..++.+ ++.|.|+-
T Consensus 76 ~l~~~l~~~gv~~vv~---GdI~s~~-qr~~~e~vc~~~gl~~~~PLW~~ 121 (222)
T TIGR00289 76 DLAGQLGELDVEALCI---GAIESNY-QKSRIDKVCRELGLKSIAPLWHA 121 (222)
T ss_pred HHHHHHHHcCCCEEEE---CccccHH-HHHHHHHHHHHcCCEEeccccCC
Confidence 5666666 7888875 4455543 2333333444 88898854
No 133
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=92.00 E-value=1.5 Score=38.79 Aligned_cols=102 Identities=21% Similarity=0.236 Sum_probs=61.1
Q ss_pred eEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCC---------hhHHHHHHhCCCCEEEeCC-CCC-ChHHH
Q 023530 130 KVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPN---------SHVIRFLERHGIPYHYLCA-KEN-EREEE 197 (281)
Q Consensus 130 rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~---------a~~~~~A~~~gIP~~~i~~-k~~-~~e~~ 197 (281)
|++++.||+ +|++- +..+.+.| .+|.++++..|..++ ..+...|+..|||.+.++. ... .+.+.
T Consensus 1 kv~v~~SGGkDS~~a-l~~a~~~G---~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~~~~~e~~~~~ 76 (194)
T cd01994 1 KVVALISGGKDSCYA-LYRALEEG---HEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEISGEEEDEVED 76 (194)
T ss_pred CEEEEecCCHHHHHH-HHHHHHcC---CEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeCCCCchHHHHH
Confidence 688999998 45554 44444555 477777766432211 2456789999999998872 211 22345
Q ss_pred HHHHHh-----CCCEEEEecccccCChhHHhhhcCCcee-----ccCCCCCC
Q 023530 198 LLELVQ-----NTDFLVLARYMQPVPLQKEAYLGYKLLE-----SLSSKGSL 239 (281)
Q Consensus 198 l~~~L~-----~~DlIVLAgYMrILs~~fl~~~~~riIN-----SLLP~f~G 239 (281)
+.+.|+ +++.|| ++-|.++. .+.|..++.+ ++.|.|+-
T Consensus 77 l~~~l~~~~~~g~~~vv---~G~i~sd~-~~~~~e~~~~~~gl~~~~PLW~~ 124 (194)
T cd01994 77 LKELLRKLKEEGVDAVV---FGAILSEY-QRTRVERVCERLGLEPLAPLWGR 124 (194)
T ss_pred HHHHHHHHHHcCCCEEE---ECccccHH-HHHHHHHHHHHcCCEEEecccCC
Confidence 555554 266555 34555543 4444444555 88898854
No 134
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=91.89 E-value=1.4 Score=39.98 Aligned_cols=103 Identities=17% Similarity=0.127 Sum_probs=64.5
Q ss_pred eeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCC---------hhHHHHHHhCCCCEEEeCCC-CC-ChHHH
Q 023530 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN---------SHVIRFLERHGIPYHYLCAK-EN-EREEE 197 (281)
Q Consensus 129 ~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~---------a~~~~~A~~~gIP~~~i~~k-~~-~~e~~ 197 (281)
||++++.||+--+..+|+.+.+. .+|+++++-.|...+ .-+...|+..|||.+.++.. .. ...++
T Consensus 1 Mk~~~l~SGGKDS~~al~~a~~~----~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~~~~e~~~e~ 76 (223)
T TIGR00290 1 MKVAALISGGKDSCLALYHALKE----HEVISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYTEGTEEDEVEE 76 (223)
T ss_pred CcEEEEecCcHHHHHHHHHHHHh----CeeEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeecCCCccHHHHH
Confidence 47888999985555678777665 367666655543221 23456799999998876522 11 22356
Q ss_pred HHHHHh--CCCEEEEecccccCChhHHhhhcCCcee-----ccCCCCCC
Q 023530 198 LLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE-----SLSSKGSL 239 (281)
Q Consensus 198 l~~~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN-----SLLP~f~G 239 (281)
+.+.|+ ++|.||. +=|.+.. ...|..++.+ ++.|.|+-
T Consensus 77 l~~~l~~~gv~~vv~---GdI~s~~-qr~~~e~v~~~lgl~~~~PLW~~ 121 (223)
T TIGR00290 77 LKGILHTLDVEAVVF---GAIYSEY-QKTRIERVCRELGLKSFAPLWHR 121 (223)
T ss_pred HHHHHHHcCCCEEEE---CCcccHH-HHHHHHHHHHhcCCEEeccccCC
Confidence 777777 7888774 4455544 3444444555 88888854
No 135
>PRK08526 threonine dehydratase; Provisional
Probab=91.87 E-value=0.67 Score=45.48 Aligned_cols=42 Identities=14% Similarity=0.111 Sum_probs=36.6
Q ss_pred CCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeec
Q 023530 36 VSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (281)
Q Consensus 36 ~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~ 77 (281)
.-.....+.+.+.=|||||-.+++++.+++.+.||.+++...
T Consensus 320 l~~~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r 361 (403)
T PRK08526 320 LIKSYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDR 361 (403)
T ss_pred HHhcCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEe
Confidence 344567788999999999999999999999999999998744
No 136
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.87 E-value=0.75 Score=34.98 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=27.0
Q ss_pred EEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeee
Q 023530 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (281)
Q Consensus 43 ~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~ 76 (281)
.++.|.=|||||-.+++++.|+ +.||.+....
T Consensus 2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~ 33 (85)
T cd04906 2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYR 33 (85)
T ss_pred eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEE
Confidence 3577888999999999999999 7788877664
No 137
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=91.67 E-value=1.4 Score=34.03 Aligned_cols=68 Identities=9% Similarity=-0.035 Sum_probs=56.5
Q ss_pred ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhh
Q 023530 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (281)
Q Consensus 41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~ 111 (281)
+.|.+++...++|+.+..|-++...+|.-+-.++.+....+|.-...+.|+.+ -+++.|...|+++-+
T Consensus 2 ~qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~---R~~~lL~~QLeKl~D 69 (86)
T COG3978 2 MQYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSD---RSVDLLTSQLEKLYD 69 (86)
T ss_pred ceEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCC---CChHHHHHHHHHHcc
Confidence 67999999999999999999999999999999988765456766666666654 478999999988753
No 138
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.44 E-value=1.8 Score=30.39 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=30.2
Q ss_pred EEEEEEcC---CCcchHHHHHHHHHhCCCeEeEeeeec
Q 023530 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFV 77 (281)
Q Consensus 43 ~iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q~~ 77 (281)
..+++.|. +++|+.+++.+.|+++|+|+.-+.|..
T Consensus 2 ~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 2 AILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred eEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 35778887 789999999999999999999988843
No 139
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.38 E-value=1.9 Score=30.05 Aligned_cols=35 Identities=9% Similarity=0.135 Sum_probs=30.3
Q ss_pred EEEEEEcC---CCcchHHHHHHHHHhCCCeEeEeeeec
Q 023530 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFV 77 (281)
Q Consensus 43 ~iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q~~ 77 (281)
..++++|. +++|+.+++-+.|+++|+|+.-+.|..
T Consensus 2 ~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~ 39 (66)
T cd04924 2 AVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGS 39 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 46788886 789999999999999999999988843
No 140
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=91.35 E-value=1.9 Score=30.65 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=28.2
Q ss_pred EEEEEEcC---CCcchHHHHHHHHHhCCCeEeEeee
Q 023530 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADV 75 (281)
Q Consensus 43 ~iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q 75 (281)
..++++|. ++||+.+++-+.|+++|+|+.-..+
T Consensus 2 ~~isvvG~~~~~~~gi~~~if~aL~~~~I~v~~~~~ 37 (64)
T cd04937 2 AKVTIIGSRIRGVPGVMAKIVGALSKEGIEILQTAD 37 (64)
T ss_pred eEEEEECCCccCCcCHHHHHHHHHHHCCCCEEEEEc
Confidence 36888997 8899999999999999999974443
No 141
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=91.24 E-value=1.1 Score=42.13 Aligned_cols=51 Identities=22% Similarity=0.272 Sum_probs=36.0
Q ss_pred CeeEEEEeeCC-hhHH-HHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEE
Q 023530 128 KYKVAVLASKQ-EHCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHY 186 (281)
Q Consensus 128 ~~rIavl~Sg~-GsnL-~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~ 186 (281)
++||||+++|+ |+.+ ..++. .. ..++++|..-. +++..+++|+++|+|+..
T Consensus 1 klrVAIIG~G~IG~~h~~~ll~---~~--~~elvaV~d~d---~es~~la~A~~~Gi~~~~ 53 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLR---SE--HLEMVAMVGID---PESDGLARARELGVKTSA 53 (285)
T ss_pred CcEEEEEeCcHHHHHHHHHHHh---CC--CcEEEEEEeCC---cccHHHHHHHHCCCCEEE
Confidence 46899999988 5543 44443 22 36888887754 455567899999999776
No 142
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=90.97 E-value=1.1 Score=33.19 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=27.4
Q ss_pred EEEEEc---CCCcchHHHHHHHHHhCCCeEeEeee
Q 023530 44 IHVFHC---PDEVGIVAKLSECIASRGGNILAADV 75 (281)
Q Consensus 44 iltV~G---~DrpGIVa~VS~~La~~giNI~dl~q 75 (281)
.+++.| .+.+|+++++-+.|+++|+|+.-+.+
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~~ 37 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIST 37 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEEc
Confidence 567755 57899999999999999999988865
No 143
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=90.65 E-value=2.3 Score=38.83 Aligned_cols=79 Identities=23% Similarity=0.348 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCCh--hHHHHHHHhhhc-CCCCeeEEEEEeCCCCC--CChhHHH
Q 023530 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE--HCLVDFLYGWQE-GKLPVEITCVISNHDRG--PNSHVIR 175 (281)
Q Consensus 101 ~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~G--snL~aLl~~~~~-g~l~~eI~~Visn~pd~--~~a~~~~ 175 (281)
.+.+.+.+...+++|- ....||+|.+||+. .+|-.++...+. ...+.++.+|-.|+--+ ....+.+
T Consensus 11 ~~~~~v~~~i~~~~li---------~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~~~~~~~~~ 81 (258)
T PRK10696 11 RLRRQVGQAIADFNMI---------EEGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPGFPEHVLPE 81 (258)
T ss_pred HHHHHHHHHHHHcCCC---------CCCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCCCCHHHHHH
Confidence 3555555555566542 23448999999984 566666655432 22346888888776221 1124678
Q ss_pred HHHhCCCCEEEeC
Q 023530 176 FLERHGIPYHYLC 188 (281)
Q Consensus 176 ~A~~~gIP~~~i~ 188 (281)
+|+++|||+++++
T Consensus 82 ~~~~lgI~~~v~~ 94 (258)
T PRK10696 82 YLESLGVPYHIEE 94 (258)
T ss_pred HHHHhCCCEEEEE
Confidence 9999999998865
No 144
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=90.61 E-value=0.59 Score=45.04 Aligned_cols=51 Identities=12% Similarity=0.186 Sum_probs=34.1
Q ss_pred CCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCE
Q 023530 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY 184 (281)
Q Consensus 127 ~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~ 184 (281)
.+.||+|.+++-|.+.-.-+.+. ++ .+++++|.+.. ...+.+.|+++|||.
T Consensus 2 ~~~rVgViG~~~G~~h~~al~~~--~~-~~eLvaV~d~~----~erA~~~A~~~gi~~ 52 (343)
T TIGR01761 2 DVQSVVVCGTRFGQFYLAAFAAA--PE-RFELAGILAQG----SERSRALAHRLGVPL 52 (343)
T ss_pred CCcEEEEEeHHHHHHHHHHHHhC--CC-CcEEEEEEcCC----HHHHHHHHHHhCCCc
Confidence 46799999996664322222221 21 37999998865 245788999999983
No 145
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=90.09 E-value=7.7 Score=42.81 Aligned_cols=159 Identities=15% Similarity=0.145 Sum_probs=80.8
Q ss_pred EEEEEEc--CCCcchHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhc-c---
Q 023530 43 GIHVFHC--PDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN-A--- 115 (281)
Q Consensus 43 ~iltV~G--~DrpGIVa~VS~~La~~giNI~dl~q~~~~-~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~-l--- 115 (281)
..+.+.| -|. ||+.++=+.+...|+...=....+.. ....=...+++..++ ...++++.+.|..++..-. .
T Consensus 462 ~~v~l~ghl~d~-~lin~~ld~i~~~gg~~~~~~~~~gqs~~~~S~~~l~v~a~d-~~~L~~i~~~l~~la~~~~~~~~~ 539 (1042)
T PLN02819 462 ILVSLSGHLFDK-FLINEALDVIEAAGGSFHLAKCQVGQSADAESYSELEVGADD-KEVLDQIIDSLTRLANPNEDYISP 539 (1042)
T ss_pred EEEEeeeecccc-hhhhhhhhhhhccCCceeeeeeccccCcccccceeeecccCc-HHHHHHHHHHHHHhcccccccccc
Confidence 3444444 355 99999999998888765554443321 111223456666543 3344555555555553110 0
Q ss_pred ---------------cceee--eecCCCCCeeEEEEeeCC-hhHHHHHHHhhhcCCC---------CeeEEEEEeCCCCC
Q 023530 116 ---------------MRSVV--RVPDIDPKYKVAVLASKQ-EHCLVDFLYGWQEGKL---------PVEITCVISNHDRG 168 (281)
Q Consensus 116 ---------------~~~~~--~~~~~~~~~rIavl~Sg~-GsnL~aLl~~~~~g~l---------~~eI~~Visn~pd~ 168 (281)
..+.- ......+++||+|+++|. |+..-..+.+. ++. ...+..+|++. +
T Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rIlVLGAG~VG~~~a~~La~~--~~~~~~~~~~~~~~~~lV~VaD~-~- 615 (1042)
T PLN02819 540 AREANKIFLKIGKVQQENECNEKAEVTKKSQNVLILGAGRVCRPAAEYLASV--KTISYYGDDSEEPTDVHVIVASL-Y- 615 (1042)
T ss_pred chhhhhhhhhhhcccccccccccccccccCCcEEEECCCHHHHHHHHHHHhC--cCccccccccccccccEEEEECC-C-
Confidence 00000 001124578999999998 54333333321 211 11223455553 1
Q ss_pred CChhHHHHHHhC-CCCEEEeCCCCCChHHHHHHHHhCCCEEEEe
Q 023530 169 PNSHVIRFLERH-GIPYHYLCAKENEREEELLELVQNTDFLVLA 211 (281)
Q Consensus 169 ~~a~~~~~A~~~-gIP~~~i~~k~~~~e~~l~~~L~~~DlIVLA 211 (281)
...+.+.|+.+ ++.+..++. .+.+++.+.++++|+||.|
T Consensus 616 -~~~a~~la~~~~~~~~v~lDv---~D~e~L~~~v~~~DaVIsa 655 (1042)
T PLN02819 616 -LKDAKETVEGIENAEAVQLDV---SDSESLLKYVSQVDVVISL 655 (1042)
T ss_pred -HHHHHHHHHhcCCCceEEeec---CCHHHHHHhhcCCCEEEEC
Confidence 23455666666 766666641 1234566666677777765
No 146
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=89.79 E-value=1.5 Score=39.66 Aligned_cols=103 Identities=15% Similarity=0.144 Sum_probs=56.1
Q ss_pred eeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCC---------hhHHHHHHhCCCCEEEeC-CCC-CChHHH
Q 023530 129 YKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN---------SHVIRFLERHGIPYHYLC-AKE-NEREEE 197 (281)
Q Consensus 129 ~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~---------a~~~~~A~~~gIP~~~i~-~k~-~~~e~~ 197 (281)
||++++-||+--+..+|..+.+. .+|++.+|-.|...+ .-+..-|+..|||.+.++ +.. ..+.++
T Consensus 1 Mk~v~l~SGGKDS~lAl~~a~~~----~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~g~~~~~~~~ 76 (218)
T PF01902_consen 1 MKVVALWSGGKDSCLALYRALRQ----HEVVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIPTSGDEEDYVED 76 (218)
T ss_dssp -EEEEE--SSHHHHHHHHHHHHT-----EEEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEEE---CCCHHHH
T ss_pred CcEEEEEcCcHHHHHHHHHHHHh----CCccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEEccCccchhhHH
Confidence 68999999984344467777665 467666554332222 235667899999999887 321 234467
Q ss_pred HHHHHh--CCCEEEEecccccCChhHHhhhcCCcee-----ccCCCCCC
Q 023530 198 LLELVQ--NTDFLVLARYMQPVPLQKEAYLGYKLLE-----SLSSKGSL 239 (281)
Q Consensus 198 l~~~L~--~~DlIVLAgYMrILs~~fl~~~~~riIN-----SLLP~f~G 239 (281)
+.+.|+ ++|.||. +=|.+..- +.|..++.+ ++.|.|+=
T Consensus 77 l~~~l~~~~v~~vv~---GdI~~~~~-r~~~e~vc~~lGl~~~~PLW~~ 121 (218)
T PF01902_consen 77 LKEALKELKVEAVVF---GDIDSEYQ-RNWVERVCERLGLEAVFPLWGR 121 (218)
T ss_dssp HHHHHCTC--SEEE-----TTS-HHH-HHHHHHHHHHCT-EEE-TTTT-
T ss_pred HHHHHHHcCCCEEEE---CcCCcHHH-HHHHHHHHHHcCCEEEecccCC
Confidence 888887 7887764 45555543 445545555 88898864
No 147
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=89.28 E-value=3.3 Score=38.95 Aligned_cols=64 Identities=17% Similarity=0.205 Sum_probs=42.7
Q ss_pred cEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccC-CCC--eEEEEEEEEeCCCCCCHHHHHHHHHHHh
Q 023530 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKN--VFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (281)
Q Consensus 42 ~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~-~~g--~F~mrlev~~p~~~~~~~~L~~~L~~la 110 (281)
+-.|-+.=+|+||-++++-+.|+.+|+|+..+++.=.. .-| .|| ++++- ..+-..++++|+++.
T Consensus 194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~--iD~eg---~~~~~~v~~AL~el~ 260 (279)
T COG0077 194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFF--IDIEG---HIDDPLVKEALEELK 260 (279)
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEE--EEEec---CcCcHhHHHHHHHHH
Confidence 33333444599999999999999999999999884311 122 344 44442 223467788887765
No 148
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=89.26 E-value=4 Score=35.03 Aligned_cols=58 Identities=21% Similarity=0.277 Sum_probs=38.1
Q ss_pred eEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCC-----hhHHHHHHhCCCCEEEeC
Q 023530 130 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN-----SHVIRFLERHGIPYHYLC 188 (281)
Q Consensus 130 rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~~-----a~~~~~A~~~gIP~~~i~ 188 (281)
||+|-+||+. ..|-.++..++. ..+.++.+|..||.-++. ..+.++|+++|||+++..
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~-~~~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~~~~ 65 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRR-RNGIKLIAVHVDHGLREESDEEAEFVEEICEQLGIPLYIVR 65 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHT-TTTTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHH-hcCCCeEEEEEecCCCcccchhHHHHHHHHHhcCCceEEEE
Confidence 7899999973 555556655543 334588888888743333 257889999999999877
No 149
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=88.90 E-value=2.4 Score=41.49 Aligned_cols=64 Identities=9% Similarity=0.053 Sum_probs=43.1
Q ss_pred ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccC-CCC--eEEEEEEEEeCCCCCCHHHHHHHHHHHhh
Q 023530 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKN--VFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (281)
Q Consensus 41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~-~~g--~F~mrlev~~p~~~~~~~~L~~~L~~la~ 111 (281)
..+++++ +|+||-.+++-+.|+.+|+|+..+++.=.+ ..+ .||+-++.. ..-..++++|+++.+
T Consensus 298 tsl~~~~--~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~-----~~d~~~~~aL~~l~~ 364 (386)
T PRK10622 298 TTLLMAT--GQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQAN-----LRSAEMQKALKELGE 364 (386)
T ss_pred EEEEEEc--CCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCC-----CCCHHHHHHHHHHHH
Confidence 3344444 799999999999999999999999985211 122 455333332 233567788877754
No 150
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=88.75 E-value=11 Score=32.55 Aligned_cols=105 Identities=13% Similarity=0.025 Sum_probs=71.6
Q ss_pred cccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCC-CCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccce
Q 023530 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS 118 (281)
Q Consensus 40 ~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~-~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~~ 118 (281)
++.+.+.+.=+|+||-.-.|-+=|++.|+||+.+-.+.+.. ++.--.++.|+... .+..++-.+.+ ++.|...
T Consensus 3 ~mritldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~----~~~~~~i~~~~-e~~Gi~I- 76 (170)
T COG2061 3 QMRITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGDR----EDKDAKIIRLL-EEEGIII- 76 (170)
T ss_pred ceEEEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEecc----cHHHHHHHHHH-HhCCcEE-
Confidence 36788899999999999999999999999999987655433 45666677777542 23334444444 6777653
Q ss_pred eeeecCCCCCeeEEEEeeCC--hhHHHHHHHhhhc
Q 023530 119 VVRVPDIDPKYKVAVLASKQ--EHCLVDFLYGWQE 151 (281)
Q Consensus 119 ~~~~~~~~~~~rIavl~Sg~--GsnL~aLl~~~~~ 151 (281)
.+++....+-++-+..=|. .+++++=++++..
T Consensus 77 -~~~dg~~~~~~~~vvLIGhiv~tdiqDTId~In~ 110 (170)
T COG2061 77 -IRFDGARLREKTDVVLIGHIVHTDIQDTIDRINS 110 (170)
T ss_pred -EEecCcCcceeEeEEEEEeeecCcHHHHHHHhhc
Confidence 3444444344444444444 4899999998765
No 151
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=88.44 E-value=1.4 Score=44.61 Aligned_cols=32 Identities=16% Similarity=0.361 Sum_probs=30.2
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCeEeEeee
Q 023530 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADV 75 (281)
Q Consensus 44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q 75 (281)
.|.|.|.||.||+.+|.+.|+.+++|+..++.
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~ 33 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEI 33 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEE
Confidence 57899999999999999999999999999887
No 152
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.17 E-value=2 Score=35.73 Aligned_cols=54 Identities=20% Similarity=0.318 Sum_probs=39.1
Q ss_pred EEEEEeCCCCCCC------hhHHHHHHhCCCCEEEeC-CCC--CChH-HHHHHHHhCCCEEEEe
Q 023530 158 ITCVISNHDRGPN------SHVIRFLERHGIPYHYLC-AKE--NERE-EELLELVQNTDFLVLA 211 (281)
Q Consensus 158 I~~Visn~pd~~~------a~~~~~A~~~gIP~~~i~-~k~--~~~e-~~l~~~L~~~DlIVLA 211 (281)
...||+|+||..+ +...++|++.|+++.++| ... ++.+ +.+.++|.+.+-=|||
T Consensus 29 FksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~f~~Al~eaegPVla 92 (130)
T COG3453 29 FKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGGITEADVEAFQRALDEAEGPVLA 92 (130)
T ss_pred cceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCCCCHHHHHHHHHHHHHhCCCEEe
Confidence 6779999998732 457889999999999999 332 2222 4566777777777775
No 153
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=88.17 E-value=7.9 Score=41.56 Aligned_cols=101 Identities=3% Similarity=0.009 Sum_probs=70.5
Q ss_pred ccEEEEEEcC---CCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccc
Q 023530 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (281)
Q Consensus 41 ~~~iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~ 117 (281)
.-.+|+++|. .++|+.+++-+.|++.++|+....+ ++. .+.+-++ .++..+++..+-++|-.
T Consensus 390 ~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~~~~-----s~~---sis~vV~-----~~d~~~av~~LH~~f~~-- 454 (810)
T PRK09466 390 GLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIWQSE-----DGL---SLVAVLR-----QGPTESLIQGLHQSLFR-- 454 (810)
T ss_pred CeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEEEeC-----CCc---EEEEEEe-----hHHHHHHHHHHHHHHhC--
Confidence 4578999996 6899999999999999999977665 222 2333333 35567777777776622
Q ss_pred eeeeecCCCCCeeEEEEeeCC-hhHHHHHHHhhhc-----CCCCeeEEEEEe
Q 023530 118 SVVRVPDIDPKYKVAVLASKQ-EHCLVDFLYGWQE-----GKLPVEITCVIS 163 (281)
Q Consensus 118 ~~~~~~~~~~~~rIavl~Sg~-GsnL~aLl~~~~~-----g~l~~eI~~Vis 163 (281)
..+..+|++++-|+ |..+..+|...+. -.++.+|++|..
T Consensus 455 -------~~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~ 499 (810)
T PRK09466 455 -------AEKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVD 499 (810)
T ss_pred -------cCceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEe
Confidence 23568999999998 7888777765321 234567787753
No 154
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=88.10 E-value=2.3 Score=38.71 Aligned_cols=55 Identities=22% Similarity=0.306 Sum_probs=38.3
Q ss_pred CCCeeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEE
Q 023530 126 DPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHY 186 (281)
Q Consensus 126 ~~~~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~ 186 (281)
.+|.|++|.+||+ |+.|. ++-.+.|+ ..|..+.+.=. |.+.++.+|.+.|+|+-+
T Consensus 2 ~sk~kvaiigsgni~tdlm--~k~lr~g~-~le~~~mvgid---p~sdglaraarlgv~tt~ 57 (310)
T COG4569 2 SSKRKVAIIGSGNIGTDLM--IKILRHGQ-HLEMAVMVGID---PQSDGLARAARLGVATTH 57 (310)
T ss_pred CCcceEEEEccCcccHHHH--HHHHhcCC-cccceeEEccC---CCccHHHHHHhcCCcchh
Confidence 4578999999999 45443 33344555 34665555533 677899999999998755
No 155
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.06 E-value=2.1 Score=32.52 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=25.0
Q ss_pred cCCCcchHHHHHHHHHhCCCeEeEeee
Q 023530 49 CPDEVGIVAKLSECIASRGGNILAADV 75 (281)
Q Consensus 49 G~DrpGIVa~VS~~La~~giNI~dl~q 75 (281)
.++.||..++|-+.|+++|+|+.-+.|
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~q 37 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVAT 37 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEe
Confidence 368899999999999999999999987
No 156
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=87.96 E-value=1.9 Score=42.31 Aligned_cols=78 Identities=17% Similarity=0.200 Sum_probs=48.8
Q ss_pred CeeEEEEeeCC--hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCC---------CC---
Q 023530 128 KYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE---------NE--- 193 (281)
Q Consensus 128 ~~rIavl~Sg~--GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~---------~~--- 193 (281)
|+||+|++|.+ |+.--+++.+..+ ..+|+++.+++ .-....+.|++++-.+.++.... ..
T Consensus 1 mk~VaILGsTGSIG~~tL~vi~~~p~---~f~VvaLaa~~---n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~ 74 (385)
T PRK05447 1 MKRITILGSTGSIGTQTLDVIRRNPD---RFRVVALSAGK---NVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGI 74 (385)
T ss_pred CceEEEEcCChHHHHHHHHHHHhCcc---ccEEEEEEcCC---CHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCc
Confidence 47999999654 4333333443222 47899998765 23467889999997776664210 00
Q ss_pred ----hHHHHHHHHh--CCCEEEEe
Q 023530 194 ----REEELLELVQ--NTDFLVLA 211 (281)
Q Consensus 194 ----~e~~l~~~L~--~~DlIVLA 211 (281)
.++.+.+++. ++|+||.|
T Consensus 75 ~v~~G~~~~~~l~~~~~vD~Vv~A 98 (385)
T PRK05447 75 EVLAGEEGLCELAALPEADVVVAA 98 (385)
T ss_pred eEEEChhHHHHHhcCCCCCEEEEe
Confidence 1345667776 68998876
No 157
>PRK08639 threonine dehydratase; Validated
Probab=87.92 E-value=2.2 Score=41.95 Aligned_cols=75 Identities=8% Similarity=0.024 Sum_probs=47.5
Q ss_pred CCCCCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 023530 33 ESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (281)
Q Consensus 33 ~~~~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~ 108 (281)
+.+.......+.+++.=|||||-..++.+.+.+.+.||.+++.......+.=...+.++.++ ....+++.+.|++
T Consensus 327 ~~~l~~~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~~~-~~h~~~i~~~L~~ 401 (420)
T PRK08639 327 ERSLIYEGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIELKD-AEDYDGLIERMEA 401 (420)
T ss_pred HHHHHhcCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEeCC-HHHHHHHHHHHHH
Confidence 34444566778999999999999999999777777799999765311111112334455553 2234445555543
No 158
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=87.85 E-value=2.5 Score=41.52 Aligned_cols=44 Identities=11% Similarity=0.108 Sum_probs=36.2
Q ss_pred CCCCCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeee
Q 023530 33 ESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVF 76 (281)
Q Consensus 33 ~~~~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~ 76 (281)
+.+...+...+.+.+.=|||||-++++.+.+...+.||.+.+..
T Consensus 316 ~~~l~~~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~ 359 (409)
T TIGR02079 316 ERSLLYEGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYT 359 (409)
T ss_pred HHHHHhcCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence 33444456778999999999999999999777787899998875
No 159
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.85 E-value=5.4 Score=27.72 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=29.7
Q ss_pred EEEEEcC---CCcchHHHHHHHHHhCCCeEeEeeeec
Q 023530 44 IHVFHCP---DEVGIVAKLSECIASRGGNILAADVFV 77 (281)
Q Consensus 44 iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q~~ 77 (281)
.+++.|. +++|+.+++.+.|++.|+|+.-++|..
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 5778885 789999999999999999999988743
No 160
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.44 E-value=3.7 Score=27.52 Aligned_cols=28 Identities=32% Similarity=0.386 Sum_probs=25.5
Q ss_pred CCCcchHHHHHHHHHhCCCeEeEeeeec
Q 023530 50 PDEVGIVAKLSECIASRGGNILAADVFV 77 (281)
Q Consensus 50 ~DrpGIVa~VS~~La~~giNI~dl~q~~ 77 (281)
+|.+|+.+++.+.|+++|+||.-+.|..
T Consensus 9 ~~~~~~~~~i~~~L~~~~i~i~~i~~~~ 36 (61)
T cd04891 9 PDKPGVAAKIFSALAEAGINVDMIVQSV 36 (61)
T ss_pred CCCCcHHHHHHHHHHHcCCcEEEEEEcC
Confidence 6889999999999999999999988853
No 161
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=87.36 E-value=2.3 Score=33.31 Aligned_cols=68 Identities=24% Similarity=0.369 Sum_probs=43.4
Q ss_pred eeEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHh--C
Q 023530 129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--N 204 (281)
Q Consensus 129 ~rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~--~ 204 (281)
+||+|.+.|+. .-+.++... .+ ..++++|.... .......++++|+| .+ + + +.++++ +
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~--~~--~~~v~~v~d~~----~~~~~~~~~~~~~~-~~-~----~----~~~ll~~~~ 62 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRS--SP--DFEVVAVCDPD----PERAEAFAEKYGIP-VY-T----D----LEELLADED 62 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHT--TT--TEEEEEEECSS----HHHHHHHHHHTTSE-EE-S----S----HHHHHHHTT
T ss_pred CEEEEECCcHHHHHHHHHHHhc--CC--CcEEEEEEeCC----HHHHHHHHHHhccc-ch-h----H----HHHHHHhhc
Confidence 48999999874 223344442 12 36888887654 23466778999999 22 2 1 335565 7
Q ss_pred CCEEEEeccc
Q 023530 205 TDFLVLARYM 214 (281)
Q Consensus 205 ~DlIVLAgYM 214 (281)
+|+|+++.=-
T Consensus 63 ~D~V~I~tp~ 72 (120)
T PF01408_consen 63 VDAVIIATPP 72 (120)
T ss_dssp ESEEEEESSG
T ss_pred CCEEEEecCC
Confidence 9999998543
No 162
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.14 E-value=2.1 Score=31.94 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=24.9
Q ss_pred cCCCcchHHHHHHHHHhCCCeEeEeee
Q 023530 49 CPDEVGIVAKLSECIASRGGNILAADV 75 (281)
Q Consensus 49 G~DrpGIVa~VS~~La~~giNI~dl~q 75 (281)
.++.+|..+++-+.|+++|+|+.-+.|
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~~ 37 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVST 37 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEe
Confidence 358899999999999999999999987
No 163
>PLN02317 arogenate dehydratase
Probab=87.00 E-value=4.9 Score=39.46 Aligned_cols=35 Identities=17% Similarity=0.125 Sum_probs=29.3
Q ss_pred ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeec
Q 023530 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (281)
Q Consensus 41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~ 77 (281)
..+++++ +|+||-+.++-+.|+.+|+|+..+++.=
T Consensus 284 TSivfsl--~~~pG~L~k~L~~Fa~~~INLtkIESRP 318 (382)
T PLN02317 284 TSIVFSL--EEGPGVLFKALAVFALRDINLTKIESRP 318 (382)
T ss_pred EEEEEEc--CCCCchHHHHHHHHHHCCCCEEEEEeee
Confidence 3444444 8899999999999999999999999853
No 164
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=87.00 E-value=1.5 Score=29.03 Aligned_cols=33 Identities=18% Similarity=0.092 Sum_probs=29.5
Q ss_pred EEEEEcCC---CcchHHHHHHHHHhCCCeEeEeeee
Q 023530 44 IHVFHCPD---EVGIVAKLSECIASRGGNILAADVF 76 (281)
Q Consensus 44 iltV~G~D---rpGIVa~VS~~La~~giNI~dl~q~ 76 (281)
.+++.|.+ .+|+.+++.+.|+++++||.-+.+.
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~ 37 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQS 37 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcC
Confidence 57788877 8999999999999999999999885
No 165
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.90 E-value=4.8 Score=28.76 Aligned_cols=35 Identities=11% Similarity=0.034 Sum_probs=30.2
Q ss_pred EEEEEEcC--CCcchHHHHHHHHHhCCCeEeEeeeec
Q 023530 43 GIHVFHCP--DEVGIVAKLSECIASRGGNILAADVFV 77 (281)
Q Consensus 43 ~iltV~G~--DrpGIVa~VS~~La~~giNI~dl~q~~ 77 (281)
.+++++|. ..+|+.+++-+.|+++|+||.-+.|..
T Consensus 2 a~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~ 38 (65)
T cd04918 2 SIISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGA 38 (65)
T ss_pred cEEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 46888887 468999999999999999999998854
No 166
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=86.67 E-value=2.6 Score=42.17 Aligned_cols=79 Identities=10% Similarity=0.103 Sum_probs=52.1
Q ss_pred CCeeEEEEee-CC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCC------------
Q 023530 127 PKYKVAVLAS-KQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN------------ 192 (281)
Q Consensus 127 ~~~rIavl~S-g~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~------------ 192 (281)
.++||+||+| |+ |++--+++.+..+ .++|+++-+++ .-.-..+-|++|.-.+..+.....
T Consensus 56 ~~KkI~ILGSTGSIGtqtLdVI~~~pd---~f~vvaLaag~---Ni~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~~ 129 (454)
T PLN02696 56 GPKPISLLGSTGSIGTQTLDIVAENPD---KFKVVALAAGS---NVTLLADQVRKFKPKLVAVRNESLVDELKEALADLD 129 (454)
T ss_pred CccEEEEecCCcHhhHHHHHHHHhCcc---ccEEEEEECCC---CHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCCC
Confidence 3579999999 55 6777778886432 36888887765 223456678899877766642100
Q ss_pred ---C---hHHHHHHHHh--CCCEEEEe
Q 023530 193 ---E---REEELLELVQ--NTDFLVLA 211 (281)
Q Consensus 193 ---~---~e~~l~~~L~--~~DlIVLA 211 (281)
+ .++.+.+++. ++|+||.|
T Consensus 130 ~~~~vl~G~egl~~la~~~evDiVV~A 156 (454)
T PLN02696 130 DKPEIIPGEEGIVEVARHPEAVTVVTG 156 (454)
T ss_pred CCcEEEECHHHHHHHHcCCCCCEEEEe
Confidence 0 1245667776 68988876
No 167
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=86.30 E-value=6.5 Score=26.79 Aligned_cols=32 Identities=25% Similarity=0.215 Sum_probs=27.4
Q ss_pred EEEEEc---CCCcchHHHHHHHHHhCCCeEeEeee
Q 023530 44 IHVFHC---PDEVGIVAKLSECIASRGGNILAADV 75 (281)
Q Consensus 44 iltV~G---~DrpGIVa~VS~~La~~giNI~dl~q 75 (281)
.+++.| ++.+|+.+++.+.|+++|+|+.-+++
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04936 2 KVSIVGAGMRSHPGVAAKMFEALAEAGINIEMIST 36 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 467776 47799999999999999999988875
No 168
>PRK11898 prephenate dehydratase; Provisional
Probab=84.26 E-value=7.9 Score=36.21 Aligned_cols=65 Identities=18% Similarity=0.113 Sum_probs=42.0
Q ss_pred cEEEEEEcC-CCcchHHHHHHHHHhCCCeEeEeeeeccCC-CC--eEEEEEEEEeCCCCCCHHHHHHHHHHHhh
Q 023530 42 HGIHVFHCP-DEVGIVAKLSECIASRGGNILAADVFVPEK-KN--VFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (281)
Q Consensus 42 ~~iltV~G~-DrpGIVa~VS~~La~~giNI~dl~q~~~~~-~g--~F~mrlev~~p~~~~~~~~L~~~L~~la~ 111 (281)
+..|.+.-+ |+||-.+++-+.++++|+|+..+++.=.+. .+ .|++.++.. .+...++++++.+.+
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~-----~~~~~~~~al~~L~~ 264 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGH-----IDDVLVAEALKELEA 264 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEcc-----CCCHHHHHHHHHHHH
Confidence 444555554 469999999999999999999999853111 12 455444332 233456777766643
No 169
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=84.09 E-value=9.6 Score=27.43 Aligned_cols=34 Identities=21% Similarity=0.145 Sum_probs=29.2
Q ss_pred EEEEEEcC--CCcchHHHHHHHHHhCCCeEeEeeee
Q 023530 43 GIHVFHCP--DEVGIVAKLSECIASRGGNILAADVF 76 (281)
Q Consensus 43 ~iltV~G~--DrpGIVa~VS~~La~~giNI~dl~q~ 76 (281)
.+++++|. .++|+.+++.+.|++.|+|+.-.+|.
T Consensus 3 a~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~~ 38 (66)
T cd04915 3 AIVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQS 38 (66)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEec
Confidence 46788886 36899999999999999999998884
No 170
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=83.77 E-value=11 Score=32.28 Aligned_cols=91 Identities=18% Similarity=0.258 Sum_probs=54.2
Q ss_pred eEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCC-----hhHHHHHHhCCCCEEEeC-CCC-------CCh
Q 023530 130 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN-----SHVIRFLERHGIPYHYLC-AKE-------NER 194 (281)
Q Consensus 130 rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~~-----a~~~~~A~~~gIP~~~i~-~k~-------~~~ 194 (281)
||+|..||+- +.+-.++...... .+.++.+|..|+.-.+. ..+.++|+++|||+++++ ... ...
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~-~~~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~ 79 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPK-LKIRLIAAHVDHGLRPESDEEAEFVQQFCKKLNIPLEIKKVDVKALAKGKKKNL 79 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHH-cCCCEEEEEeCCCCChhHHHHHHHHHHHHHHcCCCEEEEEecchhhccccCCCH
Confidence 6899999984 5566666543221 23467777777532111 357789999999998876 211 011
Q ss_pred H--------HHHHHHHh--CCCEEEEecccccCChhH
Q 023530 195 E--------EELLELVQ--NTDFLVLARYMQPVPLQK 221 (281)
Q Consensus 195 e--------~~l~~~L~--~~DlIVLAgYMrILs~~f 221 (281)
+ ..+.+..+ +.+.|+++=.+-=+.+.+
T Consensus 80 ~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D~~e~~ 116 (189)
T TIGR02432 80 EEAAREARYDFFEEIAKKHGADYILTAHHADDQAETI 116 (189)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEcCccHHHHHHH
Confidence 2 22333333 689999976655444433
No 171
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.60 E-value=10 Score=25.84 Aligned_cols=32 Identities=22% Similarity=0.190 Sum_probs=27.7
Q ss_pred EEEEEc---CCCcchHHHHHHHHHhCCCeEeEeee
Q 023530 44 IHVFHC---PDEVGIVAKLSECIASRGGNILAADV 75 (281)
Q Consensus 44 iltV~G---~DrpGIVa~VS~~La~~giNI~dl~q 75 (281)
.+++.| ++.+|+.+++.+.|+++++|+.-+++
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMIST 36 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEc
Confidence 467777 37799999999999999999988875
No 172
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=83.48 E-value=6.1 Score=38.89 Aligned_cols=83 Identities=11% Similarity=0.131 Sum_probs=54.6
Q ss_pred CeeEEEEeeCC--hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCC------------C-
Q 023530 128 KYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE------------N- 192 (281)
Q Consensus 128 ~~rIavl~Sg~--GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~------------~- 192 (281)
|+||+||+|.+ |++..+++.+..+ ..+|+++.+++ .-....+.|++++-.+.++.... .
T Consensus 1 Mk~i~IlGsTGSIG~qtL~Vi~~~~~---~f~v~~Laa~~---n~~~L~~q~~~f~p~~v~i~d~~~~~~l~~~l~~~~~ 74 (389)
T TIGR00243 1 MKQIVILGSTGSIGKSTLDVVRHNPD---HFQVVALSAGK---NVALMVEQILEFRPKFVAIDDEASLKDLKTMLQQQGS 74 (389)
T ss_pred CceEEEEecChHHHHHHHHHHHhCcc---ccEEEEEEcCC---CHHHHHHHHHHcCCCEEEEcCHHHHHHHHHHhhcCCC
Confidence 46999999987 5666667765432 37899988875 22356778999997777764210 0
Q ss_pred --C---hHHHHHHHHh--CCCEEEEe--ccccc
Q 023530 193 --E---REEELLELVQ--NTDFLVLA--RYMQP 216 (281)
Q Consensus 193 --~---~e~~l~~~L~--~~DlIVLA--gYMrI 216 (281)
+ .++.+.++.+ ++|+||.| |+.-+
T Consensus 75 ~~~v~~G~~~l~~l~~~~~~D~vv~AivG~aGL 107 (389)
T TIGR00243 75 RTEVLVGEEGICEMAALEDVDQVMNAIVGAAGL 107 (389)
T ss_pred CcEEEECHHHHHHHHcCCCCCEEEEhhhcHhhH
Confidence 0 1345666666 68999876 44443
No 173
>PRK00907 hypothetical protein; Provisional
Probab=82.88 E-value=5.4 Score=31.41 Aligned_cols=66 Identities=20% Similarity=0.178 Sum_probs=45.5
Q ss_pred ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeec-cCCCCeEE-EEEEEEeCCCCCCHHHHHHHHHHHh
Q 023530 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV-PEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLS 110 (281)
Q Consensus 41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~-~~~~g~F~-mrlev~~p~~~~~~~~L~~~L~~la 110 (281)
-.|-+.|+|.+++++...|..++..+.-+..+.+... .+..|.|. .++.+.+. +.++|.+-++++.
T Consensus 16 c~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~at----s~eQld~iY~~L~ 83 (92)
T PRK00907 16 GTFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAE----SREQYDAAHQALR 83 (92)
T ss_pred CCCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEEC----CHHHHHHHHHHHh
Confidence 3589999999999999999999998876554443332 23478874 45555554 4556655555554
No 174
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=82.42 E-value=2.4 Score=41.70 Aligned_cols=103 Identities=17% Similarity=0.315 Sum_probs=64.2
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccceeeeec
Q 023530 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVP 123 (281)
Q Consensus 44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~~~~~~~ 123 (281)
.|.|.|.||.||..++-..|..+++|+--++. ++....| +..|. .+.+.|++-..++-. ++
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEi--d~~~~IY-----ln~p~--l~~~~fs~L~aei~~----------I~ 62 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEI--DPIGRIY-----LNFPE--LEFESFSSLMAEIRR----------IP 62 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceee--cCCCeEE-----Eeccc--cCHHHHHHHHHHHhc----------CC
Confidence 57899999999999999999999999988776 4333233 34443 344444433332211 12
Q ss_pred CCCCCeeEEEEeeCCh-hHHHHHHHhhhcCCCCeeE--EEEEeCC
Q 023530 124 DIDPKYKVAVLASKQE-HCLVDFLYGWQEGKLPVEI--TCVISNH 165 (281)
Q Consensus 124 ~~~~~~rIavl~Sg~G-snL~aLl~~~~~g~l~~eI--~~Visn~ 165 (281)
--....+|.+|-|-+- .-|.+|+.+...+-+..+. ..+.+|+
T Consensus 63 GV~~vr~V~~mPseR~hl~L~aLL~al~~pVlsvd~kg~v~~aNp 107 (511)
T COG3283 63 GVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKGKVDMANP 107 (511)
T ss_pred CccceeeecCCcchhHhHHHHHHHHhCCCceEEecccCceeecCH
Confidence 2223457777877764 6788899887655433222 2345664
No 175
>PRK06291 aspartate kinase; Provisional
Probab=82.32 E-value=23 Score=35.33 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=31.5
Q ss_pred cEEEEEEcC---CCcchHHHHHHHHHhCCCeEeEeeeec
Q 023530 42 HGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFV 77 (281)
Q Consensus 42 ~~iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q~~ 77 (281)
-..|++.|. +.+|+.+++.+.|+++|+|+.-++|..
T Consensus 321 valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~s 359 (465)
T PRK06291 321 VALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGS 359 (465)
T ss_pred EEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecC
Confidence 467888886 689999999999999999999998853
No 176
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=82.22 E-value=6.3 Score=39.32 Aligned_cols=64 Identities=11% Similarity=0.160 Sum_probs=42.1
Q ss_pred cEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccC-CCC--eEEEEEEEEeCCCCCCHHHHHHHHHHHhh
Q 023530 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKN--VFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (281)
Q Consensus 42 ~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~-~~g--~F~mrlev~~p~~~~~~~~L~~~L~~la~ 111 (281)
+..|.+.-+|+||-.+.+-+.++++|+|+..+++.-.. ..+ .||+.++.. . + ..+.+.++++.+
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~--~---~-~~v~~aL~~Lk~ 82 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEA--S---D-RKLEGVIEHLRQ 82 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecC--c---c-HHHHHHHHHHHH
Confidence 34444445999999999999999999999999985422 122 455444322 1 2 455666665544
No 177
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=81.91 E-value=12 Score=27.13 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=28.8
Q ss_pred EEEEEcC---CCcchHHHHHHHHHhCCCeEeEeeee
Q 023530 44 IHVFHCP---DEVGIVAKLSECIASRGGNILAADVF 76 (281)
Q Consensus 44 iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q~ 76 (281)
.+++.|. +++|+.+++-+.|+++++|+.-++|.
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~ 38 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILISQA 38 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEec
Confidence 5777664 78999999999999999999999885
No 178
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=81.78 E-value=4.3 Score=30.15 Aligned_cols=25 Identities=8% Similarity=0.022 Sum_probs=23.2
Q ss_pred CCcchHHHHHHHHHhCCCeEeEeee
Q 023530 51 DEVGIVAKLSECIASRGGNILAADV 75 (281)
Q Consensus 51 DrpGIVa~VS~~La~~giNI~dl~q 75 (281)
-.+|.+++|-+.|+++|+|+.-+.|
T Consensus 13 ~~~g~~~~If~~la~~~I~vd~I~~ 37 (73)
T cd04934 13 LSHGFLARIFAILDKYRLSVDLIST 37 (73)
T ss_pred cccCHHHHHHHHHHHcCCcEEEEEe
Confidence 3489999999999999999999987
No 179
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=81.05 E-value=4.9 Score=33.54 Aligned_cols=52 Identities=12% Similarity=0.162 Sum_probs=37.8
Q ss_pred EEEEeeCC--hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC
Q 023530 131 VAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (281)
Q Consensus 131 Iavl~Sg~--GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~ 188 (281)
|+||+|.+ |++--+++.+..+ ..+|+++.+++ .-....+.|++|+-++.++.
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d---~f~v~~Lsa~~---n~~~L~~q~~~f~p~~v~i~ 54 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPD---KFEVVALSAGS---NIEKLAEQAREFKPKYVVIA 54 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTT---TEEEEEEEESS---THHHHHHHHHHHT-SEEEES
T ss_pred CEEEcCCcHHHHHHHHHHHhCCC---ceEEEEEEcCC---CHHHHHHHHHHhCCCEEEEc
Confidence 67888876 5777777776432 47999998875 23457788999998888875
No 180
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=80.67 E-value=13 Score=25.86 Aligned_cols=31 Identities=19% Similarity=0.194 Sum_probs=26.2
Q ss_pred EEEEcC---CCcchHHHHHHHHHhCCCeEeEeee
Q 023530 45 HVFHCP---DEVGIVAKLSECIASRGGNILAADV 75 (281)
Q Consensus 45 ltV~G~---DrpGIVa~VS~~La~~giNI~dl~q 75 (281)
|++.+. +++|..++|-+.|+++|+|+.-+.|
T Consensus 3 i~i~~~~m~~~~~~~~~if~~l~~~~i~v~~i~t 36 (62)
T cd04890 3 IEIFDQLMNGEVGFLRKIFEILEKHGISVDLIPT 36 (62)
T ss_pred EEEeccccCcccCHHHHHHHHHHHcCCeEEEEec
Confidence 444444 7789999999999999999999976
No 181
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=80.67 E-value=7.6 Score=35.96 Aligned_cols=68 Identities=21% Similarity=0.285 Sum_probs=41.7
Q ss_pred CCeeEEEEeeCCh---hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHh
Q 023530 127 PKYKVAVLASKQE---HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (281)
Q Consensus 127 ~~~rIavl~Sg~G---snL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~ 203 (281)
.++||+|++.|.. .-+.++.. .+.. .++++|...+ ...+.+.|+++|++ .... + +.++|+
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~---~~~~-~~~vav~d~~----~~~a~~~a~~~~~~-~~~~----~----~~~ll~ 64 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAA---LGGG-LELVAVVDRD----PERAEAFAEEFGIA-KAYT----D----LEELLA 64 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHh---CCCc-eEEEEEecCC----HHHHHHHHHHcCCC-cccC----C----HHHHhc
Confidence 4689999999842 12222222 1211 5778777654 34578899999999 2211 1 335666
Q ss_pred --CCCEEEEe
Q 023530 204 --NTDFLVLA 211 (281)
Q Consensus 204 --~~DlIVLA 211 (281)
++|+|+.|
T Consensus 65 ~~~iD~V~Ia 74 (342)
T COG0673 65 DPDIDAVYIA 74 (342)
T ss_pred CCCCCEEEEc
Confidence 47888876
No 182
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=80.31 E-value=5.2 Score=33.17 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=31.7
Q ss_pred EEEEEEcC---CCcchHHHHHHHHHhCCCeEeEeeeec
Q 023530 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFV 77 (281)
Q Consensus 43 ~iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q~~ 77 (281)
..+++.|| |-+||++.|++.|+++|+-|--++++.
T Consensus 64 ~~lk~~gpf~FgltGilasV~~pLsd~gigIFavStyd 101 (128)
T COG3603 64 SCLKFEGPFDFGLTGILASVSQPLSDNGIGIFAVSTYD 101 (128)
T ss_pred EEEEEeccccCCcchhhhhhhhhHhhCCccEEEEEecc
Confidence 46788888 889999999999999999999999974
No 183
>PRK08841 aspartate kinase; Validated
Probab=80.29 E-value=6.9 Score=38.33 Aligned_cols=63 Identities=14% Similarity=0.211 Sum_probs=48.3
Q ss_pred ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhccc
Q 023530 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (281)
Q Consensus 41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~ 116 (281)
.-.+++++|...||+.+++-+.|+++|+||....+ +. ..+.+-++ .++.++++..+-++|..+
T Consensus 317 ~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~~-----s~---~~is~vv~-----~~~~~~av~~lH~~f~~~ 379 (392)
T PRK08841 317 SVSLLTLVGLEANGMVEHACNLLAQNGIDVRQCST-----EP---QSSMLVLD-----PANVDRAANILHKTYVTS 379 (392)
T ss_pred CEEEEEEECCCChHHHHHHHHHHHhCCCCEEEEEC-----CC---cEEEEEEe-----HHHHHHHHHHHHHHHcCC
Confidence 45689999999999999999999999999977776 22 12333333 366788888888888765
No 184
>PRK06635 aspartate kinase; Reviewed
Probab=80.04 E-value=7.1 Score=37.84 Aligned_cols=35 Identities=23% Similarity=0.193 Sum_probs=30.8
Q ss_pred ccEEEEEEc---CCCcchHHHHHHHHHhCCCeEeEeee
Q 023530 41 THGIHVFHC---PDEVGIVAKLSECIASRGGNILAADV 75 (281)
Q Consensus 41 ~~~iltV~G---~DrpGIVa~VS~~La~~giNI~dl~q 75 (281)
.-..+++.| +|+||+++++.+.|+++|+||.-+.+
T Consensus 339 ~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~s 376 (404)
T PRK06635 339 DIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIST 376 (404)
T ss_pred CeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEEe
Confidence 456788988 59999999999999999999988764
No 185
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=79.79 E-value=25 Score=32.16 Aligned_cols=80 Identities=10% Similarity=-0.015 Sum_probs=54.5
Q ss_pred ccEEEEEEcCCCcc--hHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccce
Q 023530 41 THGIHVFHCPDEVG--IVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS 118 (281)
Q Consensus 41 ~~~iltV~G~DrpG--IVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~~ 118 (281)
..|.+++.|.+..+ +...+-+.|.+.+..+.+++.....+.+...+++++.... .+..++++-..+++..=++.--
T Consensus 141 ~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~--~~~~~le~iv~~L~~~pgV~~v 218 (225)
T PRK15385 141 KRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHA--DYRKTRELIISRIGDNDNITAI 218 (225)
T ss_pred eEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecC--CchhhHHHHHHHHhCCCCeEEE
Confidence 46889999988664 6799999999999999999985433345666777777553 2445566655555554444433
Q ss_pred eeee
Q 023530 119 VVRV 122 (281)
Q Consensus 119 ~~~~ 122 (281)
.|+.
T Consensus 219 ~W~~ 222 (225)
T PRK15385 219 HWSI 222 (225)
T ss_pred EEEe
Confidence 4543
No 186
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=79.13 E-value=9.7 Score=28.64 Aligned_cols=66 Identities=20% Similarity=0.245 Sum_probs=37.1
Q ss_pred eEEEEeeCC-hhHHHHHHHhhh-cCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHhCCCE
Q 023530 130 KVAVLASKQ-EHCLVDFLYGWQ-EGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDF 207 (281)
Q Consensus 130 rIavl~Sg~-GsnL~aLl~~~~-~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~~~Dl 207 (281)
||+|++.|+ |+. |+..+. .|.-+.+|..+.+.+ .....++++++++.+...+ ..+.++++|+
T Consensus 1 kI~iIG~G~mg~a---l~~~l~~~g~~~~~v~~~~~r~----~~~~~~~~~~~~~~~~~~~---------~~~~~~~adv 64 (96)
T PF03807_consen 1 KIGIIGAGNMGSA---LARGLLASGIKPHEVIIVSSRS----PEKAAELAKEYGVQATADD---------NEEAAQEADV 64 (96)
T ss_dssp EEEEESTSHHHHH---HHHHHHHTTS-GGEEEEEEESS----HHHHHHHHHHCTTEEESEE---------HHHHHHHTSE
T ss_pred CEEEECCCHHHHH---HHHHHHHCCCCceeEEeeccCc----HHHHHHHHHhhccccccCC---------hHHhhccCCE
Confidence 789997776 433 333322 232235666543433 3456778888885444321 2244558999
Q ss_pred EEEe
Q 023530 208 LVLA 211 (281)
Q Consensus 208 IVLA 211 (281)
|++|
T Consensus 65 vila 68 (96)
T PF03807_consen 65 VILA 68 (96)
T ss_dssp EEE-
T ss_pred EEEE
Confidence 9998
No 187
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=78.29 E-value=14 Score=34.10 Aligned_cols=81 Identities=17% Similarity=0.255 Sum_probs=51.4
Q ss_pred ChhHHHH--HHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCC--ChHHHHHHHHh--CCCEEEEe
Q 023530 138 QEHCLVD--FLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN--EREEELLELVQ--NTDFLVLA 211 (281)
Q Consensus 138 ~GsnL~a--Ll~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~--~~e~~l~~~L~--~~DlIVLA 211 (281)
.||.++- |.+.+++. ..++..++.+. .....+..++.|.|++.++.... ++.+++.+.|+ ++|+||+=
T Consensus 14 ~GHv~Rcl~LA~~l~~~--g~~v~f~~~~~----~~~~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~vV~D 87 (279)
T TIGR03590 14 LGHVMRCLTLARALHAQ--GAEVAFACKPL----PGDLIDLLLSAGFPVYELPDESSRYDDALELINLLEEEKFDILIVD 87 (279)
T ss_pred ccHHHHHHHHHHHHHHC--CCEEEEEeCCC----CHHHHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHhcCCCEEEEc
Confidence 4665554 44544321 35788776654 22446778899999998873211 12245778887 79999999
Q ss_pred cccccCChhHHhhhc
Q 023530 212 RYMQPVPLQKEAYLG 226 (281)
Q Consensus 212 gYMrILs~~fl~~~~ 226 (281)
.| -+++++.+..+
T Consensus 88 ~y--~~~~~~~~~~k 100 (279)
T TIGR03590 88 HY--GLDADWEKLIK 100 (279)
T ss_pred CC--CCCHHHHHHHH
Confidence 99 45555555554
No 188
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=78.27 E-value=8.5 Score=38.18 Aligned_cols=61 Identities=18% Similarity=0.286 Sum_probs=43.1
Q ss_pred CeeEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCCh-----hHHHHHHhCCCCEEEeC
Q 023530 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNS-----HVIRFLERHGIPYHYLC 188 (281)
Q Consensus 128 ~~rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~~a-----~~~~~A~~~gIP~~~i~ 188 (281)
..||+|.+||+- .+|-.++...+......++.++..||.-++.+ .+.++|+++|||+++..
T Consensus 15 ~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i~~~~~~ 82 (436)
T PRK10660 15 SRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQVPLVVER 82 (436)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCcchHHHHHHHHHHHHHcCCcEEEEE
Confidence 358999999984 56666665543222246899999998543332 46778999999998865
No 189
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=77.78 E-value=13 Score=39.84 Aligned_cols=51 Identities=25% Similarity=0.405 Sum_probs=40.2
Q ss_pred CccCCC-CCCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccC
Q 023530 29 GEPIES-SVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE 79 (281)
Q Consensus 29 ~~~~~~-~~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~ 79 (281)
+.|+-. +..+...-.-|+|.+||+|.+-+.|+..+..+|.||.+.+-++..
T Consensus 670 ~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~ 721 (867)
T COG2844 670 GKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTR 721 (867)
T ss_pred cCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEcc
Confidence 445544 333333457889999999999999999999999999999888754
No 190
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=77.46 E-value=19 Score=25.52 Aligned_cols=32 Identities=3% Similarity=-0.027 Sum_probs=26.2
Q ss_pred EEEEEcC---CCcchHHHHHHHHHhCCCeEeEeee
Q 023530 44 IHVFHCP---DEVGIVAKLSECIASRGGNILAADV 75 (281)
Q Consensus 44 iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q 75 (281)
+++++|. +.+|+.+++.+.|++.++++....+
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~i~~~~ 36 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHLVSQAA 36 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceEEEEeC
Confidence 6888996 7799999999999998877754433
No 191
>PRK12483 threonine dehydratase; Reviewed
Probab=77.19 E-value=13 Score=38.04 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=35.0
Q ss_pred CCCCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeec
Q 023530 34 SSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (281)
Q Consensus 34 ~~~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~ 77 (281)
.+.-.....+.+.|.=|||||-.+++++.|++. ||++++...
T Consensus 337 r~l~~~~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~ 378 (521)
T PRK12483 337 RAELGEQREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRY 378 (521)
T ss_pred HHHHhcCCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEe
Confidence 334445677889999999999999999999988 999988764
No 192
>PRK00341 hypothetical protein; Provisional
Probab=76.87 E-value=18 Score=28.31 Aligned_cols=65 Identities=8% Similarity=0.026 Sum_probs=45.1
Q ss_pred cEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeec-cCCCCeEE-EEEEEEeCCCCCCHHHHHHHHHHHhh
Q 023530 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV-PEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSK 111 (281)
Q Consensus 42 ~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~-~~~~g~F~-mrlev~~p~~~~~~~~L~~~L~~la~ 111 (281)
.|-+.|+|.+.+++.+.|-.++.++. ...+..... .+..|.|. ..+.+.+. +.+++.+-++++.+
T Consensus 17 ~~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~~----s~~q~~~iy~~L~~ 83 (91)
T PRK00341 17 DYPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVAT----DEDQLQDINSALRA 83 (91)
T ss_pred CccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEEEC----CHHHHHHHHHHHhh
Confidence 48899999999999999999998776 654443322 24578884 45555554 46666666666543
No 193
>PRK02047 hypothetical protein; Provisional
Probab=76.74 E-value=27 Score=27.21 Aligned_cols=68 Identities=9% Similarity=0.011 Sum_probs=47.0
Q ss_pred cccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeec-cCCCCeEE-EEEEEEeCCCCCCHHHHHHHHHHHhh
Q 023530 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV-PEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSK 111 (281)
Q Consensus 40 ~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~-~~~~g~F~-mrlev~~p~~~~~~~~L~~~L~~la~ 111 (281)
+..|.+.|+|++.++..+.|..++..+...+.+-+-.+ .+..|.|. ..+.+.+. +.+++.+-++++.+
T Consensus 14 Pc~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v~----s~eq~~~iY~~L~~ 83 (91)
T PRK02047 14 PSDFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRAT----SREQLDNIYRALTG 83 (91)
T ss_pred CCCCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEEEC----CHHHHHHHHHHHhh
Confidence 45699999999999999999999999876654422211 23478874 45555554 46666666666654
No 194
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=76.72 E-value=23 Score=29.91 Aligned_cols=92 Identities=21% Similarity=0.260 Sum_probs=55.7
Q ss_pred eEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCC-----hhHHHHHHhCCCCEEEe--CCC--C-CChH--
Q 023530 130 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN-----SHVIRFLERHGIPYHYL--CAK--E-NERE-- 195 (281)
Q Consensus 130 rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~~-----a~~~~~A~~~gIP~~~i--~~k--~-~~~e-- 195 (281)
||+|..||+- +.+-.++...... .+.+|.+|..|+.-... ..+.++|+.+|||.+.+ ... . ...+
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~-~~~~v~~v~id~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPR-LGLRLVAVHVDHGLRPESDEEAAFVADLCAKLGIPLYILVVALAPKPGGNLEAA 79 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHH-cCCcEEEEEecCCCCchHHHHHHHHHHHHHHcCCcEEEEeeccccCCCCCHHHH
Confidence 6899999984 5555555544322 13468778777532121 24778999999999987 211 1 1111
Q ss_pred ------HHHHHHHh--CCCEEEEecccccCChhHH
Q 023530 196 ------EELLELVQ--NTDFLVLARYMQPVPLQKE 222 (281)
Q Consensus 196 ------~~l~~~L~--~~DlIVLAgYMrILs~~fl 222 (281)
..+.+..+ +.|.|+++-++.-+.+.++
T Consensus 80 ~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD~~e~~l 114 (185)
T cd01992 80 AREARYDFFAEIAKEHGADVLLTAHHADDQAETVL 114 (185)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHH
Confidence 12334433 7999999887765554443
No 195
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=76.47 E-value=8.4 Score=34.11 Aligned_cols=69 Identities=19% Similarity=0.262 Sum_probs=39.1
Q ss_pred CCeeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHh--
Q 023530 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-- 203 (281)
Q Consensus 127 ~~~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~-- 203 (281)
.+.||+|.+.|. |..+...+. ......++++++.++|++ . ...-.|+|+..+ +.+.+.++
T Consensus 83 ~~~rV~IIGaG~iG~~l~~~~~---~~~~g~~ivgv~D~d~~~----~--~~~i~g~~v~~~--------~~l~~li~~~ 145 (213)
T PRK05472 83 RTWNVALVGAGNLGRALLNYNG---FEKRGFKIVAAFDVDPEK----I--GTKIGGIPVYHI--------DELEEVVKEN 145 (213)
T ss_pred CCcEEEEECCCHHHHHHHHhhh---cccCCcEEEEEEECChhh----c--CCEeCCeEEcCH--------HHHHHHHHHC
Confidence 456899999987 444443322 123357999999875321 0 011135554221 23556665
Q ss_pred CCCEEEEec
Q 023530 204 NTDFLVLAR 212 (281)
Q Consensus 204 ~~DlIVLAg 212 (281)
++|.+++|-
T Consensus 146 ~iD~ViIa~ 154 (213)
T PRK05472 146 DIEIGILTV 154 (213)
T ss_pred CCCEEEEeC
Confidence 688888873
No 196
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=76.37 E-value=23 Score=25.56 Aligned_cols=34 Identities=12% Similarity=0.103 Sum_probs=28.3
Q ss_pred EEEEEEcC-CCcchHHHHHHHHHhCCCeEeEeeee
Q 023530 43 GIHVFHCP-DEVGIVAKLSECIASRGGNILAADVF 76 (281)
Q Consensus 43 ~iltV~G~-DrpGIVa~VS~~La~~giNI~dl~q~ 76 (281)
..+||.+. +.+|..+++-+.|+++|+||.=+++.
T Consensus 2 ~~vtv~~~~~~~~~~a~if~~La~~~InvDmI~~~ 36 (67)
T cd04914 2 TQIKVKAKDNENDLQQRVFKALANAGISVDLINVS 36 (67)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEec
Confidence 45777776 44899999999999999999999553
No 197
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=76.07 E-value=3.1 Score=34.45 Aligned_cols=76 Identities=20% Similarity=0.247 Sum_probs=39.6
Q ss_pred CCCCeeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHh
Q 023530 125 IDPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (281)
Q Consensus 125 ~~~~~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~ 203 (281)
...++||+|.+.|+ |++|-..+.+ .| .+|..|.+.. . ...++|..+ ++...+. .+.+.++
T Consensus 7 ~~~~l~I~iIGaGrVG~~La~aL~~--ag---~~v~~v~srs----~-~sa~~a~~~-~~~~~~~--------~~~~~~~ 67 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVGTALARALAR--AG---HEVVGVYSRS----P-ASAERAAAF-IGAGAIL--------DLEEILR 67 (127)
T ss_dssp -----EEEEECTSCCCCHHHHHHHH--TT---SEEEEESSCH----H--HHHHHHC---TT-------------TTGGGC
T ss_pred CCCccEEEEECCCHHHHHHHHHHHH--CC---CeEEEEEeCC----c-ccccccccc-ccccccc--------ccccccc
Confidence 35578999999999 8888877764 35 5788877743 1 234444443 2221111 1224445
Q ss_pred CCCEEEEecccccCChhHHhh
Q 023530 204 NTDFLVLARYMQPVPLQKEAY 224 (281)
Q Consensus 204 ~~DlIVLAgYMrILs~~fl~~ 224 (281)
++|++++| ++++-+..
T Consensus 68 ~aDlv~ia-----vpDdaI~~ 83 (127)
T PF10727_consen 68 DADLVFIA-----VPDDAIAE 83 (127)
T ss_dssp C-SEEEE------S-CCHHHH
T ss_pred cCCEEEEE-----echHHHHH
Confidence 88999997 66665443
No 198
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=76.03 E-value=12 Score=33.27 Aligned_cols=68 Identities=18% Similarity=0.260 Sum_probs=35.9
Q ss_pred CeeEEEEeeCC-hhHH-HHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHhCC
Q 023530 128 KYKVAVLASKQ-EHCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (281)
Q Consensus 128 ~~rIavl~Sg~-GsnL-~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~~~ 205 (281)
.+||+|+++|+ |+.+ ..|+. .+..+.+. .+++|+.+ .....+.++++++... . + ..+.++++
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~---~~~~~~~~-i~~~~~~~--~~~~~~~~~~~~~~~~--~----~----~~~~~~~~ 67 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLK---TSKEYIEE-IIVSNRSN--VEKLDQLQARYNVSTT--T----D----WKQHVTSV 67 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHh---CCCCCcCe-EEEECCCC--HHHHHHHHHHcCcEEe--C----C----hHHHHhcC
Confidence 46899999988 4444 33333 23222221 33455421 2345666677776421 1 1 11334578
Q ss_pred CEEEEe
Q 023530 206 DFLVLA 211 (281)
Q Consensus 206 DlIVLA 211 (281)
|+|++|
T Consensus 68 DiViia 73 (245)
T PRK07634 68 DTIVLA 73 (245)
T ss_pred CEEEEe
Confidence 999888
No 199
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=75.76 E-value=7.2 Score=37.88 Aligned_cols=88 Identities=20% Similarity=0.236 Sum_probs=47.8
Q ss_pred eeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCC------------hhHHHHHHhCCCCEEEeC-CCC-C-
Q 023530 129 YKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPN------------SHVIRFLERHGIPYHYLC-AKE-N- 192 (281)
Q Consensus 129 ~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~------------a~~~~~A~~~gIP~~~i~-~k~-~- 192 (281)
|||+|..||+ +|..-|.|-. ++| .+|.+|.-..-+..+ ..+...|+..|||+++++ .+. .
T Consensus 1 ~kV~vamSGGVDSsvaA~LLk-~~G---~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~LgIp~~v~d~~~~f~~ 76 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAALLK-EQG---YDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLGIPHYVVDLREEFWE 76 (356)
T ss_dssp -EEEEE--SSHHHHHHHHHHH-HCT----EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT--EEEEETHHHHHH
T ss_pred CeEEEEccCCHHHHHHHHHHH-hhc---ccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcCCCEEEEChHHHHHH
Confidence 6999999998 4655554443 355 688888766533221 137888999999999998 321 0
Q ss_pred ----------------ChH---------HHHHHHHh---CCCEEEEecccccCChh
Q 023530 193 ----------------ERE---------EELLELVQ---NTDFLVLARYMQPVPLQ 220 (281)
Q Consensus 193 ----------------~~e---------~~l~~~L~---~~DlIVLAgYMrILs~~ 220 (281)
+.. ..+++..+ ++|.|..-=|-|+...+
T Consensus 77 ~Vi~~f~~~Y~~G~TPNPcv~CN~~IKF~~l~~~a~~~~g~d~iATGHYAri~~~~ 132 (356)
T PF03054_consen 77 EVIEPFLDEYRKGRTPNPCVLCNRFIKFGALLEYADEGLGADYIATGHYARIEKDE 132 (356)
T ss_dssp HTHHHHHHHHHTT----HHHHHHHHTTTTHHHHHHHTTTT-SEEE---SEEEEEES
T ss_pred HHHHHHHHHHhcCCCCChHHhhchhhhHHHHHHHHHhhcCCCeeccceeEEEEeec
Confidence 000 13444443 58998888888887653
No 200
>PLN02551 aspartokinase
Probab=75.42 E-value=63 Score=33.03 Aligned_cols=87 Identities=11% Similarity=0.130 Sum_probs=51.7
Q ss_pred ccEEEEEEcC---CCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccc
Q 023530 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (281)
Q Consensus 41 ~~~iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~ 117 (281)
.-..|++.|. +++|+.++|-+.|+++|+||.-+.|. ....-+.++-.. ....+.+++.|+++..++.- .
T Consensus 365 ~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~IssS------e~sIs~~v~~~~-~~~~~~i~~~l~~l~~el~~-~ 436 (521)
T PLN02551 365 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS------EVSISLTLDPSK-LWSRELIQQELDHLVEELEK-I 436 (521)
T ss_pred CeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEecc------CCEEEEEEehhH-hhhhhhHHHHHHHHHHHhhc-C
Confidence 3467788776 58999999999999999999999762 122223333221 01123355566666555541 1
Q ss_pred eeeeecCCCCCeeEEEEeeC
Q 023530 118 SVVRVPDIDPKYKVAVLASK 137 (281)
Q Consensus 118 ~~~~~~~~~~~~rIavl~Sg 137 (281)
..+ ......-+|.+.++.
T Consensus 437 ~~V--~v~~~vAiISvVG~~ 454 (521)
T PLN02551 437 AVV--NLLQGRSIISLIGNV 454 (521)
T ss_pred CeE--EEeCCEEEEEEEccC
Confidence 122 223345567777663
No 201
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=73.97 E-value=13 Score=30.91 Aligned_cols=61 Identities=13% Similarity=0.106 Sum_probs=43.5
Q ss_pred EEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHh
Q 023530 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLS 110 (281)
Q Consensus 43 ~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la 110 (281)
=++-|--+|+||=.+.|+.+|-++++|+.-+-.|+...+ -+.+.+.+. +.+...++|++.+
T Consensus 70 dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~---KAlli~r~e----d~d~~~~aLed~g 130 (142)
T COG4747 70 DVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQ---KALLIVRVE----DIDRAIKALEDAG 130 (142)
T ss_pred eEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCc---eEEEEEEhh----HHHHHHHHHHHcC
Confidence 367788899999999999999999999999888875321 112223322 4566666776543
No 202
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=73.89 E-value=15 Score=38.33 Aligned_cols=76 Identities=9% Similarity=0.168 Sum_probs=50.9
Q ss_pred CCeeEEEEeeCC-h-hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCCh----hHHHHHHhC--CCCEEEeCCCCCChHHHH
Q 023530 127 PKYKVAVLASKQ-E-HCLVDFLYGWQEGKLPVEITCVISNHDRGPNS----HVIRFLERH--GIPYHYLCAKENEREEEL 198 (281)
Q Consensus 127 ~~~rIavl~Sg~-G-snL~aLl~~~~~g~l~~eI~~Visn~pd~~~a----~~~~~A~~~--gIP~~~i~~k~~~~e~~l 198 (281)
+..||+|+++|. + +++..|+. .|- .+|.+|++|.. ..+- ...+.|+++ +|++..++. +.++.+
T Consensus 128 R~akVlVlG~Gg~~s~lv~sL~~---sG~--~~I~~vd~D~v-~SNlnRIgEl~e~A~~~n~~v~v~~i~~---~~~~dl 198 (637)
T TIGR03693 128 RNAKILAAGSGDFLTKLVRSLID---SGF--PRFHAIVTDAE-EHALDRIHELAEIAEETDDALLVQEIDF---AEDQHL 198 (637)
T ss_pred hcccEEEEecCchHHHHHHHHHh---cCC--CcEEEEecccc-chhhhHHHHHHHHHHHhCCCCceEeccC---CcchhH
Confidence 567999999998 4 55566665 462 57888888753 1111 236677775 477777653 224567
Q ss_pred HHHHhCCCEEEEe
Q 023530 199 LELVQNTDFLVLA 211 (281)
Q Consensus 199 ~~~L~~~DlIVLA 211 (281)
.+.++..|+|+++
T Consensus 199 ~ev~~~~DiVi~v 211 (637)
T TIGR03693 199 HEAFEPADWVLYV 211 (637)
T ss_pred HHhhcCCcEEEEE
Confidence 7888899999986
No 203
>PRK14449 acylphosphatase; Provisional
Probab=73.85 E-value=19 Score=27.85 Aligned_cols=60 Identities=12% Similarity=0.072 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeC
Q 023530 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (281)
Q Consensus 101 ~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn 164 (281)
-+|.-...+|.++++..|..+..+- +|-|.+.|+..+++++++.++++...+.|.-|-..
T Consensus 17 GFR~fv~~~A~~lgl~G~V~N~~dG----~Vei~~~G~~~~v~~f~~~l~~~~~~a~V~~i~~~ 76 (90)
T PRK14449 17 GLRYSVYQKAVSLGITGYAENLYDG----SVEVVAEGDEENIKELINFIKTGLRWARVDNVEER 76 (90)
T ss_pred ChHHHHHHHHHHcCCEEEEEECCCC----eEEEEEEeCHHHHHHHHHHHhhCCCceEEEEEEEE
Confidence 3688888999999999986554332 69999999999999999999987645777665544
No 204
>PRK09181 aspartate kinase; Validated
Probab=73.38 E-value=82 Score=31.76 Aligned_cols=82 Identities=10% Similarity=-0.020 Sum_probs=53.1
Q ss_pred ccEEEEEEcC---CCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccc
Q 023530 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (281)
Q Consensus 41 ~~~iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~ 117 (281)
.-..|++.|. +.+|+.++|-+.|+++|+||.-+.+. . ..+.+.++. . .+.+++.++++.++++.+
T Consensus 328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~~i~ss------~--~sis~~v~~-~--~~~~~~~~~~L~~~~~~~- 395 (475)
T PRK09181 328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYISKATN------A--NTITHYLWG-S--LKTLKRVIAELEKRYPNA- 395 (475)
T ss_pred CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEEEEEec------C--cEEEEEEcC-C--hHHHHHHHHHHHHhcCCc-
Confidence 3456677665 68999999999999999999865542 1 133444554 2 344566677766666543
Q ss_pred eeeeecCCCCCeeEEEEeeCC
Q 023530 118 SVVRVPDIDPKYKVAVLASKQ 138 (281)
Q Consensus 118 ~~~~~~~~~~~~rIavl~Sg~ 138 (281)
.+ .. ...-.|++.+.|-
T Consensus 396 -~i--~~-~~~a~VsvVG~gm 412 (475)
T PRK09181 396 -EV--TV-RKVAIVSAIGSNI 412 (475)
T ss_pred -eE--EE-CCceEEEEeCCCC
Confidence 12 22 4456788887764
No 205
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=72.71 E-value=17 Score=33.66 Aligned_cols=49 Identities=12% Similarity=0.159 Sum_probs=28.8
Q ss_pred CeeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCC
Q 023530 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP 183 (281)
Q Consensus 128 ~~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP 183 (281)
++||+|++.|. |..+ ..++..+.-..++++|.... .....+.|+++|++
T Consensus 6 ~irIGIIG~G~IG~~~---a~~L~~~~~~~el~aV~dr~----~~~a~~~a~~~g~~ 55 (271)
T PRK13302 6 ELRVAIAGLGAIGKAI---AQALDRGLPGLTLSAVAVRD----PQRHADFIWGLRRP 55 (271)
T ss_pred eeEEEEECccHHHHHH---HHHHHhcCCCeEEEEEECCC----HHHHHHHHHhcCCC
Confidence 58999999998 4333 23222221136777665533 22356677787764
No 206
>PLN02550 threonine dehydratase
Probab=71.75 E-value=14 Score=38.42 Aligned_cols=37 Identities=16% Similarity=0.203 Sum_probs=31.9
Q ss_pred CcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeec
Q 023530 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV 77 (281)
Q Consensus 39 ~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~ 77 (281)
....+.+.|.=|||||-.+++++.|++. ||++++...
T Consensus 414 ~~r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~ 450 (591)
T PLN02550 414 RQQEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRY 450 (591)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEe
Confidence 4455889999999999999999999986 999987754
No 207
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=71.72 E-value=24 Score=28.38 Aligned_cols=65 Identities=18% Similarity=0.179 Sum_probs=31.4
Q ss_pred EEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCC------hhHHHHHHhCCCCEEEeC-CCCC-ChH--HHHHHHH
Q 023530 133 VLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN------SHVIRFLERHGIPYHYLC-AKEN-ERE--EELLELV 202 (281)
Q Consensus 133 vl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~------a~~~~~A~~~gIP~~~i~-~k~~-~~e--~~l~~~L 202 (281)
+.+||.. .-++|-...+.| +.-||+|+||... +...+.|+++|+.++++| .... ..+ +++.++|
T Consensus 9 ~~vs~Q~-~~~d~~~la~~G-----fktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l 82 (110)
T PF04273_consen 9 LSVSGQP-SPEDLAQLAAQG-----FKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADAL 82 (110)
T ss_dssp EEEECS---HHHHHHHHHCT-------EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHH
T ss_pred eEECCCC-CHHHHHHHHHCC-----CcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHH
Confidence 3455553 223333333345 6779999987532 124578999999999999 3221 222 3455666
Q ss_pred h
Q 023530 203 Q 203 (281)
Q Consensus 203 ~ 203 (281)
+
T Consensus 83 ~ 83 (110)
T PF04273_consen 83 E 83 (110)
T ss_dssp H
T ss_pred H
Confidence 6
No 208
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=71.68 E-value=12 Score=39.44 Aligned_cols=63 Identities=14% Similarity=0.177 Sum_probs=46.9
Q ss_pred cEEEEEEc-CCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEE--eCCCCCCHHHHHHHHHH
Q 023530 42 HGIHVFHC-PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFI--FDPIKWPREQMDEDFFK 108 (281)
Q Consensus 42 ~~iltV~G-~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~--~p~~~~~~~~L~~~L~~ 108 (281)
...+||.. +|++|.+..++.+|+-++.+|...+..+ .|.....+.|. .+. +.+...|++++..
T Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~---~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~ 611 (693)
T PRK00227 546 DGFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA---NGPWSAEFDVRANGPQ-DFDPQEFLQAYKS 611 (693)
T ss_pred CCeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec---CCceEEEEEEecCCCC-CCChHHHHHHHHH
Confidence 36888888 9999999999999999999999988765 34433333333 112 3467888888874
No 209
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=71.43 E-value=20 Score=33.26 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=25.1
Q ss_pred CeeEEEEEeCCCCCC-ChhHHHHHHhCCCCEEEeC
Q 023530 155 PVEITCVISNHDRGP-NSHVIRFLERHGIPYHYLC 188 (281)
Q Consensus 155 ~~eI~~Visn~pd~~-~a~~~~~A~~~gIP~~~i~ 188 (281)
+.+.+.+||-++..| +..+++.-++.|||+.++.
T Consensus 60 ~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~ 94 (277)
T PRK00994 60 KPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIG 94 (277)
T ss_pred CCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEc
Confidence 347888888664333 2457888888999999998
No 210
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=71.42 E-value=32 Score=30.89 Aligned_cols=58 Identities=14% Similarity=0.169 Sum_probs=42.5
Q ss_pred CCeeEEEEeeCCh-hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC
Q 023530 127 PKYKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (281)
Q Consensus 127 ~~~rIavl~Sg~G-snL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~ 188 (281)
..-|+++|+-..- .|-. ++.+..++.-+.+|-+|-|.- .++.+..||..++||...|.
T Consensus 108 ~~~rlalFvkd~C~~C~~-~~~~l~a~~~~~Diylvgs~~---dD~~Ir~WA~~~~Idp~~V~ 166 (200)
T TIGR03759 108 GGGRLALFVKDDCVACDA-RVQRLLADNAPLDLYLVGSQG---DDERIRQWANRHQIDPAKVR 166 (200)
T ss_pred CCCeEEEEeCCCChHHHH-HHHHHhcCCCceeEEEecCCC---CHHHHHHHHHHcCCCHHHee
Confidence 3468999998542 5544 444444455578999888764 46789999999999987776
No 211
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=70.94 E-value=26 Score=35.29 Aligned_cols=64 Identities=17% Similarity=0.084 Sum_probs=42.6
Q ss_pred ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccC-CCC---eEEEEEEEEeCCCCCCHHHHHHHHHHHhh
Q 023530 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKN---VFYSRSEFIFDPIKWPREQMDEDFFKLSK 111 (281)
Q Consensus 41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~-~~g---~F~mrlev~~p~~~~~~~~L~~~L~~la~ 111 (281)
.+..|.+.-+|+||-.+++-+.++++|+|+.++++.-.. ..+ .|++.++ .. ...+++.++.+.+
T Consensus 30 ~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~E--g~-----~~~l~~aL~~Lk~ 97 (464)
T TIGR01270 30 QRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVE--LF-----HYGLQEAMDLLKS 97 (464)
T ss_pred ceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEE--cC-----HHHHHHHHHHHHH
Confidence 344455555899999999999999999999999985422 122 3454443 22 2456666666544
No 212
>PRK08210 aspartate kinase I; Reviewed
Probab=70.87 E-value=19 Score=34.92 Aligned_cols=62 Identities=16% Similarity=0.211 Sum_probs=42.6
Q ss_pred ccEEEEEEcC---CCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcc
Q 023530 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (281)
Q Consensus 41 ~~~iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l 115 (281)
.-..+++.|. |+||+.+++.+.|+++|+||....+ ++. .+.+-++ .++..++++.+-++|.+
T Consensus 338 ~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~~~~-----s~~---~is~vv~-----~~~~~~a~~~Lh~~f~~ 402 (403)
T PRK08210 338 NCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQSAD-----SHT---TIWVLVK-----EEDMEKAVNALHDAFEL 402 (403)
T ss_pred CcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEEEec-----CCC---EEEEEEc-----HHHHHHHHHHHHHHhcC
Confidence 5578889996 7899999999999999999975333 121 2223333 34566677766666654
No 213
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=70.85 E-value=19 Score=34.85 Aligned_cols=61 Identities=15% Similarity=0.254 Sum_probs=41.8
Q ss_pred ccEEEEEEcC---CCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhc
Q 023530 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (281)
Q Consensus 41 ~~~iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~ 114 (281)
.-..|+++|. ++||+.+++.+.|++.|+||.-..+ ++. .+.+-++ .++...+++.+-++|.
T Consensus 336 ~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~~-----s~~---~is~vv~-----~~d~~~av~~Lh~~f~ 399 (401)
T TIGR00656 336 GLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMIGS-----SET---NISFLVD-----EKDAEKAVRKLHEVFE 399 (401)
T ss_pred CeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEEc-----CCC---EEEEEEe-----HHHHHHHHHHHHHHHc
Confidence 5578889996 7899999999999999999985542 121 2222222 3555666666666554
No 214
>PRK14423 acylphosphatase; Provisional
Probab=70.38 E-value=20 Score=27.78 Aligned_cols=59 Identities=10% Similarity=0.005 Sum_probs=45.3
Q ss_pred HHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEe
Q 023530 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (281)
Q Consensus 101 ~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Vis 163 (281)
-+|.....+|.++++..|..++.+- +|-+.+.|+..+++.+++.++.|-..+.|.-|-.
T Consensus 19 GFR~~v~~~A~~lgl~G~V~N~~dG----~Vei~~~G~~~~i~~f~~~l~~gp~~a~V~~v~~ 77 (92)
T PRK14423 19 YYRASTRDTARELGVDGWVRNLDDG----RVEAVFEGPRDAVEAMVEWCHEGSPAAVVEDVEV 77 (92)
T ss_pred eehHHHHHHHHHcCCEEEEEECCCC----eEEEEEEECHHHHHHHHHHHHhCCCceEEEEEEE
Confidence 3688888999999999987654332 5778889998899999999887754567766544
No 215
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=69.82 E-value=28 Score=27.35 Aligned_cols=59 Identities=12% Similarity=0.039 Sum_probs=48.4
Q ss_pred HHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEe
Q 023530 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (281)
Q Consensus 101 ~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Vis 163 (281)
-++...+..|.++|++.|.+++++- +|=|++.|....++.+++.++.|.-.+.|.-|-.
T Consensus 18 GFR~~~~~~A~~lgl~G~V~N~~DG----sVeiva~G~~~~v~~~~~~l~~g~~~a~V~~v~~ 76 (92)
T COG1254 18 GFRYFTRSEALRLGLTGWVKNLDDG----SVEIVAEGPDEAVEKFIEWLRKGPPAAKVERVEV 76 (92)
T ss_pred cHHHHHHHHHHHCCCEEEEEECCCC----eEEEEEEcCHHHHHHHHHHHHhCCCceEEEEEEE
Confidence 4789999999999999998776654 6889999998889999999988843467766655
No 216
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=69.20 E-value=18 Score=30.39 Aligned_cols=58 Identities=19% Similarity=0.212 Sum_probs=37.9
Q ss_pred eEEEEeeCCh--hHHHHHHHhhhcCCC--CeeEEEEEeCCCCCCC-----hhHHHHHHhCCCCEEEeC
Q 023530 130 KVAVLASKQE--HCLVDFLYGWQEGKL--PVEITCVISNHDRGPN-----SHVIRFLERHGIPYHYLC 188 (281)
Q Consensus 130 rIavl~Sg~G--snL~aLl~~~~~g~l--~~eI~~Visn~pd~~~-----a~~~~~A~~~gIP~~~i~ 188 (281)
||+|..||+- +.+-.++..... .. +.++.++..|+..... ..+.++|+++|||+..++
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 67 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQR-RYPYGFELEALTVDEGIPGYRDESLEVVERLAEELGIELEIVS 67 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHh-hcCCCeEEEEEEEECCCCCCcHHHHHHHHHHHHHcCCceEEEe
Confidence 6899999984 444445544322 12 3577777777633211 246778999999999886
No 217
>PRK14430 acylphosphatase; Provisional
Probab=68.28 E-value=25 Score=27.34 Aligned_cols=59 Identities=17% Similarity=0.013 Sum_probs=46.1
Q ss_pred HHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeC
Q 023530 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (281)
Q Consensus 102 L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn 164 (281)
+|......|.++|+..|..++.+- +|-+.++|.-..++.+++.++.|...++|.-|-..
T Consensus 19 FR~~~~~~A~~lgl~G~VrN~~dG----sVei~~qG~~~~i~~f~~~l~~gp~~a~V~~v~~~ 77 (92)
T PRK14430 19 YRAACADAADDLGLGGWVRNRADG----TVEVMASGTVRQLEALRAWMEAGPPAAQVTKVEVG 77 (92)
T ss_pred eHHHHHHHHHHhCCEEEEEECCCC----cEEEEEEcCHHHHHHHHHHHHhCCCceEEEEEEEE
Confidence 577888899999999986543322 58899999999999999998887645777776543
No 218
>PRK14561 hypothetical protein; Provisional
Probab=68.27 E-value=12 Score=32.91 Aligned_cols=54 Identities=20% Similarity=0.164 Sum_probs=33.1
Q ss_pred eeEEEEeeCC-hh-HHHHHHHhhhcCCCCeeEEEEEeCCCCCCC-hhHHHHHHhCCCCEEEeC
Q 023530 129 YKVAVLASKQ-EH-CLVDFLYGWQEGKLPVEITCVISNHDRGPN-SHVIRFLERHGIPYHYLC 188 (281)
Q Consensus 129 ~rIavl~Sg~-Gs-nL~aLl~~~~~g~l~~eI~~Visn~pd~~~-a~~~~~A~~~gIP~~~i~ 188 (281)
|||+|+.||+ +| .+-.++... .++.++-.|..-..+ ..+...|++.|+|++.++
T Consensus 1 mkV~ValSGG~DSslll~~l~~~------~~v~a~t~~~g~~~e~~~a~~~a~~lGi~~~~v~ 57 (194)
T PRK14561 1 MKAGVLFSGGKDSSLAAILLERF------YDVELVTVNFGVLDSWKHAREAAKALGFPHRVLE 57 (194)
T ss_pred CEEEEEEechHHHHHHHHHHHhc------CCeEEEEEecCchhHHHHHHHHHHHhCCCEEEEE
Confidence 5899999998 34 333333321 234444334321112 357889999999999986
No 219
>PRK14433 acylphosphatase; Provisional
Probab=67.47 E-value=20 Score=27.66 Aligned_cols=60 Identities=15% Similarity=0.089 Sum_probs=46.3
Q ss_pred HHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeC
Q 023530 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (281)
Q Consensus 101 ~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn 164 (281)
-+|.....+|.++++..|.-++.+- .|-+.++|...+++++++.++.|-..++|.-|-..
T Consensus 15 GFR~~v~~~A~~~~l~G~V~N~~dG----~Vei~~~G~~~~i~~f~~~l~~gP~~a~V~~i~~~ 74 (87)
T PRK14433 15 GYRAFVQKKARELGLSGYAENLSDG----RVEVVAEGPKEALERLLHWLRRGPRHARVEAVDVQ 74 (87)
T ss_pred CchHHHHHHHHHcCCEEEEEECCCC----CEEEEEEECHHHHHHHHHHHhhCCCCcEEEEEEEE
Confidence 3678888999999999986444332 58888899989999999999877545777766654
No 220
>PRK14451 acylphosphatase; Provisional
Probab=67.46 E-value=26 Score=27.08 Aligned_cols=60 Identities=20% Similarity=0.188 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeC
Q 023530 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (281)
Q Consensus 101 ~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn 164 (281)
-+|......|.++++..|..+..+- +|-+.+.|+..+++++++.++.|...+.|.-|-..
T Consensus 17 GFR~~~~~~A~~~gl~G~V~N~~dG----~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~v~~~ 76 (89)
T PRK14451 17 WFRASAKKLAEQLMISGWARNLADG----RVEVFACGKEDKLEEFYTWLQKGPLNARVDVCTRE 76 (89)
T ss_pred CchHHHHHHHHHhCCEEEEEECCCC----CEEEEEEECHHHHHHHHHHHhhCCCceEEEEEEEE
Confidence 3688888999999999987654433 58889999999999999998877545777666554
No 221
>PRK14429 acylphosphatase; Provisional
Probab=67.37 E-value=29 Score=26.78 Aligned_cols=59 Identities=14% Similarity=0.118 Sum_probs=45.5
Q ss_pred HHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeC
Q 023530 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (281)
Q Consensus 102 L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn 164 (281)
+|.....+|.++|+..|..+..+- +|-+.+.|....++++++.++.|...+.|.-|-..
T Consensus 17 FR~~v~~~A~~~gl~G~V~N~~dG----~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~i~~~ 75 (90)
T PRK14429 17 CRRATLTKARALGVTGYVTNCEDG----SVEILAQGSDPAVDNLIAWCEVGVPCTEVLRVTVE 75 (90)
T ss_pred eHHHHHHHHHHhCCEEEEEECCCC----eEEEEEEeCHHHHHHHHHHHhhCCCceEEEEEEEE
Confidence 678888999999999986543322 68899999999999999999877434677665553
No 222
>PRK09224 threonine dehydratase; Reviewed
Probab=67.31 E-value=31 Score=34.93 Aligned_cols=70 Identities=13% Similarity=0.155 Sum_probs=45.8
Q ss_pred CCCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 023530 35 SVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (281)
Q Consensus 35 ~~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~-~~g~F~mrlev~~p~~~~~~~~L~~~L~~ 108 (281)
+.-.......+.|.=|||||-..++.+.|+ +.||++++..... ..+..+ +.+++++...+.+++.+.|++
T Consensus 321 ~~~~~~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~--vgie~~~~~~~~~~i~~~L~~ 391 (504)
T PRK09224 321 AELGEQREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIF--VGVQLSRGQEERAEIIAQLRA 391 (504)
T ss_pred HHHhcCCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEE--EEEEeCChhhHHHHHHHHHHH
Confidence 334455678899999999999999999998 6999998875421 122333 334444311125666666655
No 223
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=67.03 E-value=28 Score=26.51 Aligned_cols=59 Identities=17% Similarity=0.216 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEe
Q 023530 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (281)
Q Consensus 101 ~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Vis 163 (281)
-+|......|.++|+..|..+..+. +|-+.+.|....++++++.++.|.-++.|.-+-.
T Consensus 18 gFR~~v~~~A~~~gl~G~V~N~~dg----~V~i~~~G~~~~l~~f~~~l~~g~p~a~V~~i~~ 76 (91)
T PF00708_consen 18 GFRPFVKRIARKLGLTGWVRNLPDG----SVEIEAEGEEEQLEEFIKWLKKGPPPARVDEIEV 76 (91)
T ss_dssp SHHHHHHHHHHHTT-EEEEEE-TTS----EEEEEEEEEHHHHHHHHHHHHHSSTTSEEEEEEE
T ss_pred ChhHHHHHHHHHhCCceEEEECCCC----EEEEEEEeCHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 3788899999999999986544332 7889999998999999999998865577765544
No 224
>PRK14447 acylphosphatase; Provisional
Probab=66.55 E-value=26 Score=27.41 Aligned_cols=60 Identities=8% Similarity=0.013 Sum_probs=46.0
Q ss_pred HHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeC
Q 023530 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (281)
Q Consensus 102 L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn 164 (281)
+|.....+|.++|+..|..+..+ --+|-+.+.|...+++++++.++.|...+.|.-|-..
T Consensus 19 FR~~~~~~A~~~gl~G~V~N~~d---G~~Vei~~qG~~~~l~~f~~~l~~gp~~a~V~~v~~~ 78 (95)
T PRK14447 19 FRQSMKEVANRNGVRGWVRNRSD---GRTVEAVLEGPRDAVLKVIEWARVGPPGARVEDVEVK 78 (95)
T ss_pred chHHHHHHHhhcCeEEEEEECCC---CCEEEEEEEeCHHHHHHHHHHHhhCCCCeEEEEEEEE
Confidence 68888899999999998655422 1137888899999999999998877656777666543
No 225
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=66.51 E-value=18 Score=36.54 Aligned_cols=71 Identities=13% Similarity=0.155 Sum_probs=45.6
Q ss_pred CCCCCCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 023530 33 ESSVSPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (281)
Q Consensus 33 ~~~~~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~-~~g~F~mrlev~~p~~~~~~~~L~~~L~~ 108 (281)
+.+.-.+...+.+.|.=|||||-..++.+.|++ .||++++..... ....-+ +.++++. ..+.+++.++|++
T Consensus 316 ~r~~~~~~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~--vgie~~~-~~~~~~l~~~L~~ 387 (499)
T TIGR01124 316 ERCELGEQREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIF--VGVQLSN-PQERQEILARLND 387 (499)
T ss_pred HHHHHhcCCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEE--EEEEeCC-HHHHHHHHHHHHH
Confidence 334444567789999999999999999999997 599998875321 122222 3344442 2244555555544
No 226
>PRK14431 acylphosphatase; Provisional
Probab=66.50 E-value=26 Score=27.14 Aligned_cols=58 Identities=21% Similarity=0.225 Sum_probs=45.6
Q ss_pred HHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCC-CCeeEEEEEeC
Q 023530 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGK-LPVEITCVISN 164 (281)
Q Consensus 102 L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~-l~~eI~~Visn 164 (281)
+|-.-...|.++++..|..+.+ + .|-+.+.|...++++++..++.|. ..++|.-|...
T Consensus 17 FR~~~~~~A~~~gl~G~V~N~~--d---gVei~~qG~~~~l~~f~~~l~~g~p~~a~V~~v~~~ 75 (89)
T PRK14431 17 FRYFTQRIAMNYNIVGTVQNVD--D---YVEIYAQGDDADLERFIQGVIEGASPASNVTSYQLE 75 (89)
T ss_pred EhHHHHHHHhhcCCEEEEEECC--C---cEEEEEEcCHHHHHHHHHHHhcCCCCcEEEEEEEEE
Confidence 5777788899999999875432 2 399999999999999999999886 34777666544
No 227
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=66.45 E-value=19 Score=32.71 Aligned_cols=56 Identities=14% Similarity=0.092 Sum_probs=38.3
Q ss_pred CeeEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCC---hhHHHHHHhCCCCEEEeC
Q 023530 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN---SHVIRFLERHGIPYHYLC 188 (281)
Q Consensus 128 ~~rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~~---a~~~~~A~~~gIP~~~i~ 188 (281)
..|++|..||+- +.+-.++.. .| .++.+|..|++..+. ..+.++|++.|||+++++
T Consensus 12 ~~~vlVa~SGGvDSs~ll~la~~--~g---~~v~av~~~~~~~~~~e~~~a~~~a~~lgi~~~ii~ 72 (252)
T TIGR00268 12 FKKVLIAYSGGVDSSLLAAVCSD--AG---TEVLAITVVSPSISPRELEDAIIIAKEIGVNHEFVK 72 (252)
T ss_pred cCCEEEEecCcHHHHHHHHHHHH--hC---CCEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 347999999983 444444443 24 367777777643221 356889999999999886
No 228
>PRK14436 acylphosphatase; Provisional
Probab=65.90 E-value=33 Score=26.64 Aligned_cols=60 Identities=13% Similarity=0.072 Sum_probs=46.0
Q ss_pred HHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeC
Q 023530 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (281)
Q Consensus 101 ~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn 164 (281)
-+|.....+|.++++..|..+..+- +|-+.+.|....++++++.++.|.-.+.|.-|-..
T Consensus 18 GFR~~v~~~A~~l~l~G~V~N~~dG----~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~v~~~ 77 (91)
T PRK14436 18 GFRWSMQREARKLGVNGWVRNLPDG----SVEAVLEGDEERVEALIGWAHQGPPLARVTRVEVK 77 (91)
T ss_pred CcHHHHHHHHHHcCCEEEEEECCCC----cEEEEEEcCHHHHHHHHHHHhhCCCceEEEEEEEE
Confidence 4688888999999999987654332 58888999989999999988776544677666553
No 229
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=65.77 E-value=22 Score=27.46 Aligned_cols=50 Identities=12% Similarity=0.256 Sum_probs=32.4
Q ss_pred EEEeCCCCCCChhHHHHHHhCCCCEEEe--CCCCCChHHHHHHHHhCCCEEEE
Q 023530 160 CVISNHDRGPNSHVIRFLERHGIPYHYL--CAKENEREEELLELVQNTDFLVL 210 (281)
Q Consensus 160 ~Visn~pd~~~a~~~~~A~~~gIP~~~i--~~k~~~~e~~l~~~L~~~DlIVL 210 (281)
+||..+++. .....+.++++|....++ +.+..+.+..+.+.++++|+||+
T Consensus 3 liVGG~~~~-~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv 54 (97)
T PF10087_consen 3 LIVGGREDR-ERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIV 54 (97)
T ss_pred EEEcCCccc-HHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEE
Confidence 455554442 345788899999998887 22222223346677779999987
No 230
>PRK14426 acylphosphatase; Provisional
Probab=65.61 E-value=31 Score=26.76 Aligned_cols=61 Identities=13% Similarity=0.084 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcC-CCCeeEEEEEeC
Q 023530 100 EQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEG-KLPVEITCVISN 164 (281)
Q Consensus 100 ~~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g-~l~~eI~~Visn 164 (281)
--+|......|.++++..|..+..+- .|-+.+.|....++++++.++.| ...+.|.-|-..
T Consensus 17 VGFR~~v~~~A~~~gl~G~V~N~~dG----~Vei~~~G~~~~i~~f~~~l~~g~P~~a~V~~i~~~ 78 (92)
T PRK14426 17 VGFRYHTQHEALKLGLTGYAKNLDDG----SVEVVACGEEEQVEKLMEWLKEGGPRSARVDRVLTE 78 (92)
T ss_pred cCchHHHHHHHHHhCCEEEEEECCCC----cEEEEEEeCHHHHHHHHHHHhcCCCCCeEEEEEEEE
Confidence 34688889999999999986554333 58899999999999999999887 334677665553
No 231
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=65.23 E-value=22 Score=34.61 Aligned_cols=86 Identities=17% Similarity=0.104 Sum_probs=55.0
Q ss_pred CCeeEEEEeeCC-hhHH-HHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC-CCC-C----------
Q 023530 127 PKYKVAVLASKQ-EHCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKE-N---------- 192 (281)
Q Consensus 127 ~~~rIavl~Sg~-GsnL-~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~-~k~-~---------- 192 (281)
++.||+|..||+ +|.+ -.++.. .| .++.+|..+..+.....+.+.|+.+|||+++++ ... .
T Consensus 4 ~~~kVlVa~SGGvDSsv~a~lL~~--~G---~eV~av~~~~~~~e~~~a~~va~~LGI~~~vvd~~~~f~~~v~~~~~~~ 78 (362)
T PRK14664 4 SKKRVLVGMSGGIDSTATCLMLQE--QG---YEIVGVTMRVWGDEPQDARELAARMGIEHYVADERVPFKDTIVKNFIDE 78 (362)
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHH--cC---CcEEEEEecCcchhHHHHHHHHHHhCCCEEEEeChHHHHHHHHHHhHHH
Confidence 346999999998 3443 344442 34 578877776532112457889999999999987 321 0
Q ss_pred ----C---------hH---HHHHHHHh--CCCEEEEecccccC
Q 023530 193 ----E---------RE---EELLELVQ--NTDFLVLARYMQPV 217 (281)
Q Consensus 193 ----~---------~e---~~l~~~L~--~~DlIVLAgYMrIL 217 (281)
. .. ..+.+..+ ++|+|+..=|.++-
T Consensus 79 ~~~G~tpnpC~~Cn~~iKf~~L~~~A~~~G~~~IATGHyar~~ 121 (362)
T PRK14664 79 YRQGRTPNPCVMCNPLFKFRMLIEWADKLGCAWIATGHYSRLE 121 (362)
T ss_pred HHcCCCCCCchhhhHHHHHHHHHHHHHHcCCCEEEECCccccc
Confidence 0 01 12344443 78999999999874
No 232
>PRK14438 acylphosphatase; Provisional
Probab=64.88 E-value=28 Score=26.95 Aligned_cols=60 Identities=13% Similarity=0.103 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeC
Q 023530 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (281)
Q Consensus 101 ~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn 164 (281)
-+|.....+|.++|+..|..+..+- .|-+.+.|+...++++++.++.|...+.|.-|...
T Consensus 17 GFR~~~~~~A~~~gl~G~V~N~~dG----~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~v~~~ 76 (91)
T PRK14438 17 AFRHHTQQTAQRLNVSGWVKNLPNG----SVQGCFEGEETDVAALIDWCHHGPSRARVSGVIVE 76 (91)
T ss_pred CccHHHHHHHHHcCCEEEEEECCCC----EEEEEEEECHHHHHHHHHHHhhCCCCcEEEEEEEE
Confidence 3677888899999999986544332 58888999999999999998877555777766554
No 233
>PRK14445 acylphosphatase; Provisional
Probab=64.84 E-value=28 Score=26.89 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=46.3
Q ss_pred HHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeC
Q 023530 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (281)
Q Consensus 101 ~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn 164 (281)
-+|......|.++++..|..+..+- +|-+.+.|....++++++.++.|.-.+.|.-|-..
T Consensus 18 GFR~~v~~~A~~~gl~G~V~N~~dG----~Vei~~qG~~~~l~~f~~~l~~gP~~a~V~~i~~~ 77 (91)
T PRK14445 18 GFRMFIDRAASELNLSGWVRNLPDG----TVEIEAQGSSGMIDELIKQAERGPSRSSVTSIMVE 77 (91)
T ss_pred CChHHHHHHHhhCCCEEEEEECCCC----eEEEEEEECHHHHHHHHHHHHhCCCCcEEEEEEEE
Confidence 3688888999999999986544322 58899999999999999998876544777666554
No 234
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=64.71 E-value=22 Score=29.74 Aligned_cols=78 Identities=15% Similarity=0.173 Sum_probs=45.3
Q ss_pred CeeEEEEeeCCh---hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEE-eCCCCCChHHHHHHHH-
Q 023530 128 KYKVAVLASKQE---HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHY-LCAKENEREEELLELV- 202 (281)
Q Consensus 128 ~~rIavl~Sg~G---snL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~-i~~k~~~~e~~l~~~L- 202 (281)
++||.|+.+|+. .=.++|+.+.....+.+.=+++-+.+...++..+.+.++++||+.-- .+++ +.+..
T Consensus 2 ~~kVLFVC~gN~cRSpmAE~l~~~~~~~~~~v~SAGt~~~~g~~~~~~a~~vl~e~Gid~~~~~~k~-------i~~~~~ 74 (139)
T COG0394 2 MMKVLFVCTGNICRSPMAEALLRHLAPDNVEVDSAGTGGHPGEPPDPRAVEVLAEHGIDISGHRSKQ-------LTEEDF 74 (139)
T ss_pred CceEEEEcCCCcccCHHHHHHHHHhccCCeEEECCccCCCCCCCCCHHHHHHHHHcCCCcCCccCcc-------Cchhhh
Confidence 679999999995 44455666544322222223432111111456788999999998763 2222 11222
Q ss_pred hCCCEEEEec
Q 023530 203 QNTDFLVLAR 212 (281)
Q Consensus 203 ~~~DlIVLAg 212 (281)
++.|+||...
T Consensus 75 ~~~DlIitmd 84 (139)
T COG0394 75 DEFDLIITMD 84 (139)
T ss_pred hhCCEEEEeC
Confidence 3789999865
No 235
>PRK14427 acylphosphatase; Provisional
Probab=64.56 E-value=31 Score=26.96 Aligned_cols=60 Identities=13% Similarity=0.068 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeC
Q 023530 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (281)
Q Consensus 101 ~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn 164 (281)
-+|.-....|.++++..|..+..+- .|-|.+.|....++++++.++.+.-.+.|.-|-..
T Consensus 20 GFR~fv~~~A~~lgl~G~V~N~~dG----sVei~~qG~~~~i~~f~~~l~~~p~~a~V~~i~~~ 79 (94)
T PRK14427 20 GFRYWTMRKAEELGLTGTVRNLDDG----SVALVAEGTGEQVEKLLDWLNSDRAPGRVERVDHT 79 (94)
T ss_pred CChHHHHHHHHHcCCEEEEEECCCC----eEEEEEEECHHHHHHHHHHHhhCCCCcEEEEEEEE
Confidence 3678888899999999986554332 58889999999999999999877445677665543
No 236
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=64.52 E-value=12 Score=30.02 Aligned_cols=91 Identities=22% Similarity=0.193 Sum_probs=52.0
Q ss_pred eEEEEe-eCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCC----CCEEEeCCCCCChHHHHHHHHh
Q 023530 130 KVAVLA-SKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHG----IPYHYLCAKENEREEELLELVQ 203 (281)
Q Consensus 130 rIavl~-Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~g----IP~~~i~~k~~~~e~~l~~~L~ 203 (281)
||+|++ ||. |.-|-.+|.. .-..+++.+++..+ +.+..++..++ +.-..+.. .-.+.+.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~----hp~~e~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 65 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAE----HPDFELVALVSSSR----SAGKPLSEVFPHPKGFEDLSVED-------ADPEELS 65 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHH----TSTEEEEEEEESTT----TTTSBHHHTTGGGTTTEEEBEEE-------TSGHHHT
T ss_pred CEEEECCCCHHHHHHHHHHhc----CCCccEEEeeeecc----ccCCeeehhccccccccceeEee-------cchhHhh
Confidence 789999 776 5555555553 33589999999752 23455666554 22222211 0112336
Q ss_pred CCCEEEEecccccCChhHHhhhcCCcee------ccCCCCCCC
Q 023530 204 NTDFLVLARYMQPVPLQKEAYLGYKLLE------SLSSKGSLT 240 (281)
Q Consensus 204 ~~DlIVLAgYMrILs~~fl~~~~~riIN------SLLP~f~G~ 240 (281)
++|+|++| ++......+-.+.+. .+-+.||-.
T Consensus 66 ~~Dvvf~a-----~~~~~~~~~~~~~~~~g~~ViD~s~~~R~~ 103 (121)
T PF01118_consen 66 DVDVVFLA-----LPHGASKELAPKLLKAGIKVIDLSGDFRLD 103 (121)
T ss_dssp TESEEEE------SCHHHHHHHHHHHHHTTSEEEESSSTTTTS
T ss_pred cCCEEEec-----CchhHHHHHHHHHhhCCcEEEeCCHHHhCC
Confidence 89999999 555554444433333 688888763
No 237
>PRK14437 acylphosphatase; Provisional
Probab=64.33 E-value=31 Score=27.89 Aligned_cols=60 Identities=13% Similarity=0.035 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEe
Q 023530 100 EQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (281)
Q Consensus 100 ~~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Vis 163 (281)
=-+|.....+|.++|+..|..+..+- +|-|.+.|....++++++.++.|.-.++|.-|-.
T Consensus 36 VGFR~fv~~~A~~lgL~G~V~N~~dG----~Vei~~qG~~~~ie~f~~~L~~gP~~a~V~~i~~ 95 (109)
T PRK14437 36 VFFRESVRKKAEELQLTGWVKNLSHG----DVELVACGERDSIMILTEWLWEGPPQAAVSNVNW 95 (109)
T ss_pred cCchHHHHHHHHHhCCeEEEEECCCC----CEEEEEEECHHHHHHHHHHHHhCCCceEEEEEEE
Confidence 34788889999999999987554332 5889999998999999999887754567765543
No 238
>PRK14422 acylphosphatase; Provisional
Probab=64.16 E-value=35 Score=26.58 Aligned_cols=59 Identities=12% Similarity=0.010 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEe
Q 023530 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (281)
Q Consensus 101 ~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Vis 163 (281)
-+|.....+|.++++..|.-+..+- +|-+.+.|....++++++.++.|.-.+.|.-|-.
T Consensus 20 GFR~~v~~~A~~~gl~G~V~N~~dG----~Vei~~~G~~~~i~~f~~~l~~gp~~a~V~~i~~ 78 (93)
T PRK14422 20 GFRWWTRSRALELGLTGYAANLADG----RVQVVAEGPRAACEKLLQLLRGDDTPGRVDKVVE 78 (93)
T ss_pred CcHHHHHHHHHHcCCEEEEEECCCC----CEEEEEEcCHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 4688888999999999986443322 4889999999999999999988754466766554
No 239
>PRK14441 acylphosphatase; Provisional
Probab=64.05 E-value=32 Score=26.79 Aligned_cols=60 Identities=12% Similarity=0.089 Sum_probs=45.6
Q ss_pred HHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeC
Q 023530 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (281)
Q Consensus 101 ~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn 164 (281)
-+|.....+|.++++..|..+..+ -+|-+.+.|....++.+++.++.|...+.|.-+-..
T Consensus 19 GFR~~v~~~A~~lgL~G~V~N~~d----G~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~v~~~ 78 (93)
T PRK14441 19 AFRQSAADEARRLGVEGWVRNLPD----GRVEAEAEGERAAVGALVRWCHAGPPAARVDRVEVE 78 (93)
T ss_pred cchHHHHHHHhhcCcEEEEEECCC----CEEEEEEEECHHHHHHHHHHHhhCCCCcEEEEEEEE
Confidence 367888899999999998644322 268899999989999999998877545777665443
No 240
>PRK09034 aspartate kinase; Reviewed
Probab=63.68 E-value=88 Score=31.18 Aligned_cols=32 Identities=16% Similarity=0.065 Sum_probs=27.9
Q ss_pred EEEEEEc---CCCcchHHHHHHHHHhCCCeEeEee
Q 023530 43 GIHVFHC---PDEVGIVAKLSECIASRGGNILAAD 74 (281)
Q Consensus 43 ~iltV~G---~DrpGIVa~VS~~La~~giNI~dl~ 74 (281)
..|++.+ ++++|+.++|.+.|+++|+|+.-+.
T Consensus 309 ~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i~ 343 (454)
T PRK09034 309 TSIYISKYLMNREVGFGRKVLQILEDHGISYEHMP 343 (454)
T ss_pred EEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEEc
Confidence 5677776 6789999999999999999999874
No 241
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=63.65 E-value=32 Score=31.56 Aligned_cols=50 Identities=8% Similarity=0.151 Sum_probs=28.0
Q ss_pred CeeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCE
Q 023530 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY 184 (281)
Q Consensus 128 ~~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~ 184 (281)
|+||+|++.|. |.. ++..+.......++++|+... ...+.++++.+|++.
T Consensus 1 mmrIgIIG~G~iG~~---ia~~l~~~~~~~elv~v~d~~----~~~a~~~a~~~~~~~ 51 (265)
T PRK13304 1 MLKIGIVGCGAIASL---ITKAILSGRINAELYAFYDRN----LEKAENLASKTGAKA 51 (265)
T ss_pred CCEEEEECccHHHHH---HHHHHHcCCCCeEEEEEECCC----HHHHHHHHHhcCCee
Confidence 46999999987 332 233332332246777665432 223456667777654
No 242
>PRK14444 acylphosphatase; Provisional
Probab=63.32 E-value=37 Score=26.34 Aligned_cols=59 Identities=8% Similarity=-0.018 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEe
Q 023530 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (281)
Q Consensus 101 ~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Vis 163 (281)
-+|......|.++++..|.-+..+ -.|-+.+.|...+++++++.++.|...++|.-+-.
T Consensus 18 GFR~~v~~~A~~lgl~G~V~N~~d----G~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~i~~ 76 (92)
T PRK14444 18 NFRAYTRDRAREAGVKGWVRNLSD----GRVEAVFEGSRPAVQKMISWCYSGPSHARVERVEV 76 (92)
T ss_pred CcHHHHHHHHHHhCCEEEEEECCC----CcEEEEEEcCHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 368888899999999988543322 25889999999999999999887654577766544
No 243
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=63.15 E-value=28 Score=26.48 Aligned_cols=60 Identities=13% Similarity=0.169 Sum_probs=35.1
Q ss_pred HHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHh-CCCEEEE
Q 023530 144 DFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-NTDFLVL 210 (281)
Q Consensus 144 aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~-~~DlIVL 210 (281)
..++++++|+ +..+.+-+|-++.--.....+|++++||++.++++ ++|=..+- ++..-++
T Consensus 18 ~v~kai~~gk--aklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~s~-----~eLG~a~G~~~~~a~~ 78 (82)
T PRK13602 18 QTVKALKRGS--VKEVVVAEDADPRLTEKVEALANEKGVPVSKVDSM-----KKLGKACGIEVGAAAV 78 (82)
T ss_pred HHHHHHHcCC--eeEEEEECCCCHHHHHHHHHHHHHcCCCEEEECCH-----HHHHHHHCCCcCEEEE
Confidence 3445555564 56666666653211135778899999999998732 24555554 4444333
No 244
>PRK14428 acylphosphatase; Provisional
Probab=62.80 E-value=39 Score=26.69 Aligned_cols=60 Identities=12% Similarity=-0.002 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeC
Q 023530 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (281)
Q Consensus 101 ~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn 164 (281)
-+|--...+|.++++..|..+..+- +|-+.+.|....++++++.++.|--.+.|.-|...
T Consensus 22 GFR~fv~~~A~~lgL~G~V~N~~dG----sVei~~qG~~~~i~~fi~~l~~gP~~a~V~~v~~~ 81 (97)
T PRK14428 22 GFRYFTVTQARRLGVQGWVRNCRDG----SVELEAQGSSDAVQALVEQLAIGPRWSEVSHVAVH 81 (97)
T ss_pred cchHHHHHHHHHcCCEEEEEECCCC----EEEEEEEcCHHHHHHHHHHHhhCCCccEEEEEEEE
Confidence 3677888899999999986543322 58899999999999999998876545777666554
No 245
>PRK08210 aspartate kinase I; Reviewed
Probab=62.75 E-value=58 Score=31.64 Aligned_cols=35 Identities=9% Similarity=0.130 Sum_probs=30.0
Q ss_pred cEEEEEEcCCC-cchHHHHHHHHHhCCCeEeEeeee
Q 023530 42 HGIHVFHCPDE-VGIVAKLSECIASRGGNILAADVF 76 (281)
Q Consensus 42 ~~iltV~G~Dr-pGIVa~VS~~La~~giNI~dl~q~ 76 (281)
-..+++.+.+. +|+.++|.+.|+++|+||.-+.|.
T Consensus 271 i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~ 306 (403)
T PRK08210 271 VTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIF 306 (403)
T ss_pred cEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec
Confidence 35677777665 999999999999999999999875
No 246
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=62.68 E-value=22 Score=34.28 Aligned_cols=73 Identities=22% Similarity=0.280 Sum_probs=41.5
Q ss_pred CeeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC-CCC---CChHHHHHHHH
Q 023530 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKE---NEREEELLELV 202 (281)
Q Consensus 128 ~~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~-~k~---~~~e~~l~~~L 202 (281)
++||+|+++|. |+.|..++.. .| .+|. +-..+|+ -+.++-+.+ -...++| -.. -.....+.+++
T Consensus 1 ~~kI~ViGaGswGTALA~~la~--ng---~~V~-lw~r~~~----~~~~i~~~~-~N~~yLp~i~lp~~l~at~Dl~~a~ 69 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLAR--NG---HEVR-LWGRDEE----IVAEINETR-ENPKYLPGILLPPNLKATTDLAEAL 69 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHh--cC---CeeE-EEecCHH----HHHHHHhcC-cCccccCCccCCcccccccCHHHHH
Confidence 46999999999 8988877764 23 3454 4444332 223333322 2222333 111 12233466777
Q ss_pred hCCCEEEEe
Q 023530 203 QNTDFLVLA 211 (281)
Q Consensus 203 ~~~DlIVLA 211 (281)
+++|+||+|
T Consensus 70 ~~ad~iv~a 78 (329)
T COG0240 70 DGADIIVIA 78 (329)
T ss_pred hcCCEEEEE
Confidence 789999998
No 247
>PRK06683 hypothetical protein; Provisional
Probab=62.52 E-value=37 Score=25.91 Aligned_cols=49 Identities=18% Similarity=0.237 Sum_probs=31.1
Q ss_pred EeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC
Q 023530 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (281)
Q Consensus 134 l~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~ 188 (281)
+++|.-..+. +++.|+ +..+.|-.|-+++-......+|+.++||++.++
T Consensus 12 ~v~G~~~v~k----aik~gk--aklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~ 60 (82)
T PRK06683 12 VVVGHKRTLE----AIKNGI--VKEVVIAEDADMRLTHVIIRTALQHNIPITKVE 60 (82)
T ss_pred EEEcHHHHHH----HHHcCC--eeEEEEECCCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 3455544444 445564 667767676532112356788999999999986
No 248
>PRK07431 aspartate kinase; Provisional
Probab=62.00 E-value=32 Score=35.21 Aligned_cols=63 Identities=13% Similarity=0.153 Sum_probs=46.8
Q ss_pred ccEEEEEEcC---CCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhccc
Q 023530 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAM 116 (281)
Q Consensus 41 ~~~iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~ 116 (281)
.-..++++|. .+||+.+++.+.|+++|+|+.-+.+ +. ..+.+-++ .++.+++.+.+-++|++.
T Consensus 518 ~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~~-----S~---~~Is~vV~-----~~~~~~av~~Lh~~f~~~ 583 (587)
T PRK07431 518 AIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIAT-----SE---IRTSCVVA-----EDDGVKALQAVHQAFGLA 583 (587)
T ss_pred CeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEeec-----cc---eEEEEEEe-----HHHHHHHHHHHHHHhccC
Confidence 4567999997 8899999999999999999977764 22 13334443 466777787777777653
No 249
>PRK06635 aspartate kinase; Reviewed
Probab=61.73 E-value=1.1e+02 Score=29.63 Aligned_cols=35 Identities=23% Similarity=0.159 Sum_probs=29.3
Q ss_pred EEEEEEc-CCCcchHHHHHHHHHhCCCeEeEeeeec
Q 023530 43 GIHVFHC-PDEVGIVAKLSECIASRGGNILAADVFV 77 (281)
Q Consensus 43 ~iltV~G-~DrpGIVa~VS~~La~~giNI~dl~q~~ 77 (281)
..|++.| .++||+.+++.+.|+++|+||.-++|..
T Consensus 263 ~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~ 298 (404)
T PRK06635 263 AKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNV 298 (404)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecC
Confidence 4556655 5789999999999999999999998864
No 250
>PRK14425 acylphosphatase; Provisional
Probab=61.69 E-value=41 Score=26.23 Aligned_cols=60 Identities=10% Similarity=0.077 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeC
Q 023530 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (281)
Q Consensus 101 ~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn 164 (281)
-+|.....+|.++|+..|..+..+- .|-+.+.|....++++++.++.|.-.+.|.-+-..
T Consensus 20 GFR~~v~~~A~~~gl~G~V~N~~dG----sVei~~qG~~~~le~f~~~l~~gp~~a~V~~i~~~ 79 (94)
T PRK14425 20 GFRDWTRDEAERLGLTGWVRNESDG----SVTALIAGPDSAISAMIERFRRGPPGASVSGVETE 79 (94)
T ss_pred cchHHHHHHHHHhCCEEEEEECCCC----eEEEEEEeCHHHHHHHHHHHhhCCCceEEEEEEEE
Confidence 3688888999999999986543332 68899999999999999998877545777665543
No 251
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=61.49 E-value=35 Score=32.53 Aligned_cols=80 Identities=14% Similarity=0.203 Sum_probs=47.1
Q ss_pred CeeEEEEeeCCh-hHHHHH--HHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC-CCCCC---h------
Q 023530 128 KYKVAVLASKQE-HCLVDF--LYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENE---R------ 194 (281)
Q Consensus 128 ~~rIavl~Sg~G-snL~aL--l~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~-~k~~~---~------ 194 (281)
|+||.+-+-|+| |-.-+| .+..++. .++|..|-+++.- -.+...++|+|++.++ .+... .
T Consensus 1 ~~~i~~~~GGTGGHi~Pala~a~~l~~~--g~~v~~vg~~~~~-----e~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 73 (352)
T PRK12446 1 MKKIVFTGGGSAGHVTPNLAIIPYLKED--NWDISYIGSHQGI-----EKTIIEKENIPYYSISSGKLRRYFDLKNIKDP 73 (352)
T ss_pred CCeEEEEcCCcHHHHHHHHHHHHHHHhC--CCEEEEEECCCcc-----ccccCcccCCcEEEEeccCcCCCchHHHHHHH
Confidence 457777777775 665554 4444432 4788888776521 1234567799998886 22211 0
Q ss_pred ------HHHHHHHHh--CCCEEEEec-cc
Q 023530 195 ------EEELLELVQ--NTDFLVLAR-YM 214 (281)
Q Consensus 195 ------e~~l~~~L~--~~DlIVLAg-YM 214 (281)
.-+...+++ +||+|+.-| |.
T Consensus 74 ~~~~~~~~~~~~i~~~~kPdvvi~~Ggy~ 102 (352)
T PRK12446 74 FLVMKGVMDAYVRIRKLKPDVIFSKGGFV 102 (352)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEecCchh
Confidence 112334455 899999766 65
No 252
>PRK14452 acylphosphatase; Provisional
Probab=61.48 E-value=42 Score=26.99 Aligned_cols=61 Identities=13% Similarity=0.019 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeC
Q 023530 100 EQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (281)
Q Consensus 100 ~~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn 164 (281)
--++.....+|.++++..|..+..+. +|-+.+.|....++++++.+..|...+.|.-|-..
T Consensus 33 VGFR~~v~~~A~~lgL~G~V~N~~dG----sVeI~~qG~~~~ve~F~~~l~~gP~~A~V~~v~~~ 93 (107)
T PRK14452 33 VGFRASCCRRALDLGLSGWVRNLSDG----SVEVQAEGPPLALSELRAWCERGPPGARVKRVDPS 93 (107)
T ss_pred cChhHHHHHHHHHhCCEEEEEECCCC----CEEEEEEcCHHHHHHHHHHHhcCCCCcEEEEEEEE
Confidence 34788889999999999997654433 58899999999999998877777555777766553
No 253
>PRK14450 acylphosphatase; Provisional
Probab=61.46 E-value=39 Score=26.08 Aligned_cols=61 Identities=15% Similarity=0.122 Sum_probs=45.3
Q ss_pred HHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeC
Q 023530 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (281)
Q Consensus 101 ~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn 164 (281)
-+|......|.++++..|..++.+- ..|-+.++|+...++++++.++.|...+.|.-|-..
T Consensus 16 GFR~~v~~~A~~~~l~G~V~N~~dG---~~Vei~~~G~~~~v~~f~~~l~~gp~~a~V~~v~~~ 76 (91)
T PRK14450 16 YFRDFTRTQATRLGLCGYAKNLANG---NEVEVVAEGDKDSLLEFLDLLRSGPPRAEVKEVETS 76 (91)
T ss_pred CcHHHHHHHHHHcCCEEEEEECCCC---CEEEEEEEeCHHHHHHHHHHHhhCCCCcEEEEEEEE
Confidence 3688888999999999986544322 137788999988999999998877544677665543
No 254
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=61.39 E-value=1e+02 Score=33.17 Aligned_cols=36 Identities=11% Similarity=0.225 Sum_probs=31.1
Q ss_pred ccEEEEEEcC---CCcchHHHHHHHHHhCCCeEeEeeee
Q 023530 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVF 76 (281)
Q Consensus 41 ~~~iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q~ 76 (281)
.-..|++.|. +++|+.+++-+.|+++|+||.-++|.
T Consensus 314 dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqs 352 (819)
T PRK09436 314 NMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQS 352 (819)
T ss_pred CEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcC
Confidence 3457888876 67999999999999999999888875
No 255
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=61.32 E-value=16 Score=30.20 Aligned_cols=49 Identities=10% Similarity=0.015 Sum_probs=36.6
Q ss_pred hHHHHHHHHHhCCCeEeEeeeeccC-CCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 023530 55 IVAKLSECIASRGGNILAADVFVPE-KKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (281)
Q Consensus 55 IVa~VS~~La~~giNI~dl~q~~~~-~~g~F~mrlev~~p~~~~~~~~L~~~L~~ 108 (281)
=|..+.+.|.++|+.|..++.+... ....|+|++.-.- +...|...+.+
T Consensus 69 EV~pvi~aL~~~GI~vtAlHNH~l~e~Prl~ymH~~~~g-----dp~~lA~~vr~ 118 (123)
T PF07485_consen 69 EVNPVISALRKNGIEVTALHNHWLFEQPRLFYMHIWGVG-----DPAKLARKVRA 118 (123)
T ss_pred HHHHHHHHHHHCCceEEEEecccccCCCCEEEEEEEecC-----CHHHHHHHHHH
Confidence 4788999999999999999998743 3458898886542 35556555544
No 256
>PRK07431 aspartate kinase; Provisional
Probab=61.20 E-value=1.1e+02 Score=31.38 Aligned_cols=87 Identities=16% Similarity=0.116 Sum_probs=53.8
Q ss_pred EEEEE-cCCCcchHHHHHHHHHhCCCeEeEeeeeccCC-CCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccceeee
Q 023530 44 IHVFH-CPDEVGIVAKLSECIASRGGNILAADVFVPEK-KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVR 121 (281)
Q Consensus 44 iltV~-G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~-~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~~~~~ 121 (281)
.+++. -++++|+.+++.+.|+++|+||.-+.|..... .|.- .+.|.++. .+...+++.++++.++++.. .+.
T Consensus 441 ~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~--~isf~v~~--~~~~~~~~~l~~l~~~~~~~--~i~ 514 (587)
T PRK07431 441 QLAIRNVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTR--DISFTVPK--EDREAAQKVLRELAKQLPGA--EVE 514 (587)
T ss_pred EEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCce--eEEEEEcH--HHHHHHHHHHHHHHHhcCCc--eEE
Confidence 34443 46789999999999999999999999864322 1222 23344553 24455566666666666532 111
Q ss_pred ecCCCCCeeEEEEeeCC
Q 023530 122 VPDIDPKYKVAVLASKQ 138 (281)
Q Consensus 122 ~~~~~~~~rIavl~Sg~ 138 (281)
.....-+|.+.+.|-
T Consensus 515 --~~~~va~VSvVG~gm 529 (587)
T PRK07431 515 --DGPAIAKVSIVGAGM 529 (587)
T ss_pred --EeCCeEEEEEECCCc
Confidence 123455788877754
No 257
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=61.20 E-value=60 Score=29.02 Aligned_cols=74 Identities=19% Similarity=0.214 Sum_probs=41.0
Q ss_pred EEeeCC-hhHHHHHHHhhhcCCCCeeEEEE-EeCCCC--C------CChhHHHHHHhCCCCEEEeCCCC-CC-hHHHHHH
Q 023530 133 VLASKQ-EHCLVDFLYGWQEGKLPVEITCV-ISNHDR--G------PNSHVIRFLERHGIPYHYLCAKE-NE-REEELLE 200 (281)
Q Consensus 133 vl~Sg~-GsnL~aLl~~~~~g~l~~eI~~V-isn~pd--~------~~a~~~~~A~~~gIP~~~i~~k~-~~-~e~~l~~ 200 (281)
++.||+ +|++- +..+.+.| .+|.++ ..+.++ + +-..+...|+..|||.+.++.+. .. .++.+.+
T Consensus 2 vl~SGGkDS~~a-l~~a~~~G---~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip~~~i~~~~~~~~~~~~l~~ 77 (218)
T TIGR03679 2 ALYSGGKDSNYA-LYKALEEG---HEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIPLVKIETSGEKEKEVEDLKG 77 (218)
T ss_pred eeecCcHHHHHH-HHHHHHcC---CEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCCEEEEECCCCChHHHHHHHH
Confidence 677887 46654 45555556 467544 333211 0 11346778999999999887321 11 2233444
Q ss_pred HHh-----CCCEEEE
Q 023530 201 LVQ-----NTDFLVL 210 (281)
Q Consensus 201 ~L~-----~~DlIVL 210 (281)
.++ ++|.||.
T Consensus 78 ~l~~~~~~g~~~vv~ 92 (218)
T TIGR03679 78 ALKELKREGVEGIVT 92 (218)
T ss_pred HHHHHHHcCCCEEEE
Confidence 443 5776665
No 258
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=61.05 E-value=56 Score=27.66 Aligned_cols=110 Identities=10% Similarity=0.091 Sum_probs=62.8
Q ss_pred CeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCC--CCC-hhHH----HHHHhCCCCEEEeCCCCCChHHHHHH
Q 023530 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDR--GPN-SHVI----RFLERHGIPYHYLCAKENEREEELLE 200 (281)
Q Consensus 128 ~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd--~~~-a~~~----~~A~~~gIP~~~i~~k~~~~e~~l~~ 200 (281)
.+||++.+-+.+.....++..... ++.+ .-+++ .+. .+. ...+ +.+++.|-.+.+.+ .+.+
T Consensus 2 gl~i~~vGD~~~rv~~Sl~~~~~~--~g~~-~~~~~-P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~--------~~~e 69 (158)
T PF00185_consen 2 GLKIAYVGDGHNRVAHSLIELLAK--FGME-VVLIA-PEGLRYPPDPEVLEKAKKNAKKNGGKITITD--------DIEE 69 (158)
T ss_dssp TEEEEEESSTTSHHHHHHHHHHHH--TTSE-EEEES-SGGGGGSHHHHHHHHHHHHHHHHTTEEEEES--------SHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHHH--cCCE-EEEEC-CCcccCCCCHHHHHHHHHHHHHhCCCeEEEe--------CHHH
Confidence 368888887556555666554332 3456 33334 221 011 1233 45566676665542 2457
Q ss_pred HHhCCCEEEEeccc----------------ccCChhHHhhhcCC-ceeccCCCCCCCCCCCCchhHHHHhc
Q 023530 201 LVQNTDFLVLARYM----------------QPVPLQKEAYLGYK-LLESLSSKGSLTSYFNMHMPKHMILT 254 (281)
Q Consensus 201 ~L~~~DlIVLAgYM----------------rILs~~fl~~~~~r-iINSLLP~f~G~g~~g~~vh~a~l~~ 254 (281)
.++++|+|..-+|. -.++.++++..+.. ++-.=||++|| ..|-..+..+
T Consensus 70 ~l~~aDvvy~~~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~LP~~R~-----~Ev~~eV~~~ 135 (158)
T PF00185_consen 70 ALKGADVVYTDRWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPLPANRG-----EEVSDEVDDS 135 (158)
T ss_dssp HHTT-SEEEEESSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESSS--BT-----TSBEHHHHTS
T ss_pred hcCCCCEEEEcCcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCCCCCCC-----ceeCHhHhCC
Confidence 77899999999998 56777777765432 33378999999 4555555544
No 259
>PRK14448 acylphosphatase; Provisional
Probab=61.02 E-value=49 Score=25.54 Aligned_cols=59 Identities=19% Similarity=0.113 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEe
Q 023530 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (281)
Q Consensus 101 ~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Vis 163 (281)
-+|......|.++++..|.-+..+ -.|-|.+.|....++++++.++.|.-.+.|.-|-.
T Consensus 16 GFR~~v~~~A~~lgl~G~V~N~~d----G~Vei~~~G~~~~v~~f~~~l~~gp~~a~V~~v~~ 74 (90)
T PRK14448 16 GFRYFTWQEATKIGIKGYVKNRPD----GSVEVVAVGSDAQIAAFRDWLQHGPPTAVVCNVIE 74 (90)
T ss_pred chHHHHHHHHHHhCCEEEEEECCC----CCEEEEEEeCHHHHHHHHHHHHhCCCceEEEEEEE
Confidence 468888999999999998644333 24888999998899999999887754477776644
No 260
>PRK14442 acylphosphatase; Provisional
Probab=60.90 E-value=37 Score=26.33 Aligned_cols=60 Identities=13% Similarity=0.021 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeC
Q 023530 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (281)
Q Consensus 101 ~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn 164 (281)
-+|......|.++++..|..+..+- .|-+.+.|+...++++++.++.|.-.+.|..|-..
T Consensus 18 GFR~~~~~~A~~~gl~G~V~N~~dG----~Vei~~qG~~~~i~~f~~~l~~gp~~a~V~~v~~~ 77 (91)
T PRK14442 18 GFRQATREEADRLELDGWVRNLDDG----RVEVVWEGEEDRAKALERWLGRGPRHAEVSAVEVE 77 (91)
T ss_pred cccHHHHHHHHHcCCEEEEEECCCC----CEEEEEEcCHHHHHHHHHHHhhCCCCeEEEEEEEE
Confidence 4677888899999999987554432 58899999988999999998876545777766554
No 261
>PRK14440 acylphosphatase; Provisional
Probab=60.67 E-value=43 Score=25.90 Aligned_cols=60 Identities=18% Similarity=0.109 Sum_probs=45.8
Q ss_pred HHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeC
Q 023530 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (281)
Q Consensus 101 ~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn 164 (281)
-+|......|.++++..|..+..+- +|-+.+.|....++++++.++.|.-.+.|.-|-..
T Consensus 17 GFR~~v~~~A~~~gl~G~V~N~~dG----~Vei~~~G~~~~v~~f~~~l~~gp~~a~V~~i~~~ 76 (90)
T PRK14440 17 GFRKFVQIHAIRLGIKGYAKNLPDG----SVEVVAEGYEEALSKLLERIKQGPPAAEVEKVDFS 76 (90)
T ss_pred CchHHHHHHHHHcCCEEEEEECCCC----CEEEEEEcCHHHHHHHHHHHhhCCCCcEEEEEEEE
Confidence 3688888999999999985443322 68899999999999999998877544667665443
No 262
>PRK14420 acylphosphatase; Provisional
Probab=60.43 E-value=38 Score=26.06 Aligned_cols=59 Identities=17% Similarity=-0.018 Sum_probs=45.3
Q ss_pred HHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeC
Q 023530 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (281)
Q Consensus 102 L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn 164 (281)
+|.-....|.++++..|..+.. .-+|-+.+.|....++++++.++.+.-.+.|.-+-..
T Consensus 17 FR~~~~~~A~~~gl~G~V~N~~----dG~Vei~~qG~~~~i~~f~~~l~~~p~~a~V~~i~~~ 75 (91)
T PRK14420 17 FRYFVQMEADKRKLTGWVKNRD----DGTVEIEAEGPEEALQLFLDAIEKGSPFSKVTDVHIE 75 (91)
T ss_pred ChHHHHHHHHHcCCEEEEEECC----CCcEEEEEEECHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence 6778888999999999864432 2368899999999999999999887434677666554
No 263
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=60.09 E-value=1.9e+02 Score=28.76 Aligned_cols=76 Identities=12% Similarity=0.067 Sum_probs=48.8
Q ss_pred CCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccce---eeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCee
Q 023530 81 KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS---VVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVE 157 (281)
Q Consensus 81 ~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~~---~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~e 157 (281)
.|.|-+.++=--|. ...+|..+|+++-++|.-+.+ .-+.+-+.-+.||||..|.+|..++|++..++.-.-.++
T Consensus 82 ~G~~ql~v~~i~~~---G~G~l~~~~~~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~aa~~D~~~~~~~r~p~~~ 158 (432)
T TIGR00237 82 RGDYQIICFEMQPA---GEGLLQLAYEQLKEKLAAEGLFDQEYKKPLPHFPKRVGVITSQTGAALADILHILKRRDPSLK 158 (432)
T ss_pred CCcEEEEEEEeccC---ChHHHHHHHHHHHHHHHHCCCCCchhcCCCCCCCCEEEEEeCCccHHHHHHHHHHHhhCCCce
Confidence 55555444332333 478889999888777664433 112223344689999999999999999987765432245
Q ss_pred EE
Q 023530 158 IT 159 (281)
Q Consensus 158 I~ 159 (281)
|.
T Consensus 159 ~~ 160 (432)
T TIGR00237 159 VV 160 (432)
T ss_pred EE
Confidence 44
No 264
>PRK14421 acylphosphatase; Provisional
Probab=59.97 E-value=49 Score=26.24 Aligned_cols=59 Identities=10% Similarity=0.071 Sum_probs=45.9
Q ss_pred HHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeC
Q 023530 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (281)
Q Consensus 102 L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn 164 (281)
+|.-...+|.++++..|..+..+- +|-+.+.|....++++++.++.|--.+.|.-|-..
T Consensus 19 FR~fv~~~A~~lgL~G~V~N~~dG----~Vei~~~G~~~~i~~f~~~l~~gP~~a~V~~v~~~ 77 (99)
T PRK14421 19 YRAWVARTAEALGLEGWVRNRRDG----SVEALFAGPADAVAEMIARCRRGPSAARVDAVEDE 77 (99)
T ss_pred chHHHHHHHHHhCCEEEEEECCCC----EEEEEEeCCHHHHHHHHHHHHhCCCCcEEEEEEEE
Confidence 678888999999999986543322 68889999999999999988876545777766554
No 265
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=59.61 E-value=1.1e+02 Score=29.67 Aligned_cols=35 Identities=17% Similarity=0.112 Sum_probs=30.3
Q ss_pred cEEEEEEc---CCCcchHHHHHHHHHhCCCeEeEeeee
Q 023530 42 HGIHVFHC---PDEVGIVAKLSECIASRGGNILAADVF 76 (281)
Q Consensus 42 ~~iltV~G---~DrpGIVa~VS~~La~~giNI~dl~q~ 76 (281)
-..+++.| .+++|+.+++.+.|+++|+||.-++|.
T Consensus 260 va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~ 297 (401)
T TIGR00656 260 VTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQT 297 (401)
T ss_pred EEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcC
Confidence 35688885 578999999999999999999988874
No 266
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=59.43 E-value=36 Score=33.14 Aligned_cols=89 Identities=17% Similarity=0.205 Sum_probs=45.5
Q ss_pred CCeeEEEEeeCC-hhHHHHHHHhhhcCC----CCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC-CCCC---ChHHH
Q 023530 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGK----LPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKEN---EREEE 197 (281)
Q Consensus 127 ~~~rIavl~Sg~-GsnL~aLl~~~~~g~----l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~-~k~~---~~e~~ 197 (281)
.++||+|+++|. |+.|-.++.. .+. +..+|.+-.-| ++.......+.-.+.+....++| -+.. .....
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~--n~~~~~~~~~~V~lw~~~-~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsd 86 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGE--NTQRNYIFHNEVRMWVLE-EIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSD 86 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh--cCCcccCCCCeEEEEEec-ccccchHHHHHHHhcCCCcccCCCCcCCCceEEecC
Confidence 457999999999 7888777764 221 12355554433 21001111222222233333333 1211 11123
Q ss_pred HHHHHhCCCEEEEecccccCChhHHh
Q 023530 198 LLELVQNTDFLVLARYMQPVPLQKEA 223 (281)
Q Consensus 198 l~~~L~~~DlIVLAgYMrILs~~fl~ 223 (281)
+.+.++++|+||+| +|+.+++
T Consensus 87 l~eav~~aDiIvlA-----VPsq~l~ 107 (365)
T PTZ00345 87 LKEAVEDADLLIFV-----IPHQFLE 107 (365)
T ss_pred HHHHHhcCCEEEEE-----cChHHHH
Confidence 44666789999998 5555543
No 267
>PRK14446 acylphosphatase; Provisional
Probab=59.20 E-value=37 Score=26.27 Aligned_cols=59 Identities=12% Similarity=0.040 Sum_probs=45.8
Q ss_pred HHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeC
Q 023530 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (281)
Q Consensus 102 L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn 164 (281)
+|-.-..+|.++++..|..+..+- +|-|.+.|....++++++.++.|--.+.|.-|...
T Consensus 17 FR~fv~~~A~~lgl~G~V~N~~dG----sVei~~qG~~~~l~~f~~~l~~gP~~a~V~~v~~~ 75 (88)
T PRK14446 17 YRASTRERAVALGLVGHARNQADG----SVEVVAAGSAAALEALEAWLWQGPPAATVAAVTRT 75 (88)
T ss_pred EhHHHHHHHeeCCeEEEEEECCCC----CEEEEEEeCHHHHHHHHHHHhhCCCceEEEEEEEE
Confidence 566777889999999987654332 58888899888999999998877545788776654
No 268
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=58.91 E-value=46 Score=26.35 Aligned_cols=54 Identities=13% Similarity=0.220 Sum_probs=34.9
Q ss_pred CeeEEEEeeCChhH--HHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCC
Q 023530 128 KYKVAVLASKQEHC--LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189 (281)
Q Consensus 128 ~~rIavl~Sg~Gsn--L~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~ 189 (281)
+.-++|++|.+|.+ +.+.++..++. .+.++++-++. +..++|.++|+++..+|.
T Consensus 43 ~~dl~I~iS~SG~t~e~i~~~~~a~~~--g~~iI~IT~~~------~l~~~~~~~~~~~~~~p~ 98 (119)
T cd05017 43 RKTLVIAVSYSGNTEETLSAVEQAKER--GAKIVAITSGG------KLLEMAREHGVPVIIIPK 98 (119)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHC--CCEEEEEeCCc------hHHHHHHHcCCcEEECCC
Confidence 34689999999843 33334433332 35666554442 367789999999999883
No 269
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=58.83 E-value=57 Score=28.67 Aligned_cols=83 Identities=19% Similarity=0.194 Sum_probs=50.1
Q ss_pred CeeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHh-CC
Q 023530 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ-NT 205 (281)
Q Consensus 128 ~~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~-~~ 205 (281)
.++|+|.+.|+ |..+-..+.. .| ++|+ ++|+ ....+.+.++.+|.. .++. + +++. ++
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~--~G---~~Vv--v~D~---~~~~~~~~~~~~g~~--~v~~-----~----~l~~~~~ 86 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLE--EG---AKLI--VADI---NEEAVARAAELFGAT--VVAP-----E----EIYSVDA 86 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CC---CEEE--EEcC---CHHHHHHHHHHcCCE--EEcc-----h----hhccccC
Confidence 35899988887 4444333332 34 5665 4554 122345556665632 2221 1 2333 79
Q ss_pred CEEEEecccccCChhHHhhhcCCcee
Q 023530 206 DFLVLARYMQPVPLQKEAYLGYKLLE 231 (281)
Q Consensus 206 DlIVLAgYMrILs~~fl~~~~~riIN 231 (281)
|+++.+.--.++++..+++.+.++|=
T Consensus 87 Dv~vp~A~~~~I~~~~~~~l~~~~v~ 112 (200)
T cd01075 87 DVFAPCALGGVINDDTIPQLKAKAIA 112 (200)
T ss_pred CEEEecccccccCHHHHHHcCCCEEE
Confidence 99997777778888888888877765
No 270
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=58.70 E-value=38 Score=32.49 Aligned_cols=85 Identities=21% Similarity=0.251 Sum_probs=53.5
Q ss_pred eeEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCC-------------ChhHHHHHHhCCCCEEEeC-CCC-
Q 023530 129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-------------NSHVIRFLERHGIPYHYLC-AKE- 191 (281)
Q Consensus 129 ~rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~-------------~a~~~~~A~~~gIP~~~i~-~k~- 191 (281)
+||+|..||+- +.+-.++.. .| .++.++..+..+.. -..+.+.|+++|||+++++ .+.
T Consensus 1 ~kVlValSGGvDSsvla~lL~~--~G---~~V~~v~~~~~~~~~~~~~~~~~s~~d~~~a~~~a~~LgIp~~vvd~~~~f 75 (346)
T PRK00143 1 KRVVVGMSGGVDSSVAAALLKE--QG---YEVIGVFMKLWDDDDETGKGGCCAEEDIADARRVADKLGIPHYVVDFEKEF 75 (346)
T ss_pred CeEEEEecCCHHHHHHHHHHHH--cC---CcEEEEEEeCCCcccccccCCcCcHHHHHHHHHHHHHcCCcEEEEeCHHHH
Confidence 48999999983 444444443 33 46777766653211 1257889999999999987 210
Q ss_pred C-----------------------ChH---HHHHHHHh--CCCEEEEecccccCC
Q 023530 192 N-----------------------ERE---EELLELVQ--NTDFLVLARYMQPVP 218 (281)
Q Consensus 192 ~-----------------------~~e---~~l~~~L~--~~DlIVLAgYMrILs 218 (281)
. +.. ..+.+..+ ++|.|+.+=|.+...
T Consensus 76 ~~~vi~~~~~~~~~g~tpnpc~~C~r~ik~~~l~~~A~~~g~~~IATGH~a~d~~ 130 (346)
T PRK00143 76 WDRVIDYFLDEYKAGRTPNPCVLCNKEIKFKAFLEYARELGADYIATGHYARIRD 130 (346)
T ss_pred HHHHHHHHHHHHHcCCCCCcChhhhHHHHHHHHHHHHHHCCCCEEEeeeeccccc
Confidence 0 001 12333333 799999999998863
No 271
>PRK13820 argininosuccinate synthase; Provisional
Probab=58.61 E-value=29 Score=34.24 Aligned_cols=57 Identities=16% Similarity=0.019 Sum_probs=38.8
Q ss_pred CeeEEEEeeCCh--hHHHHHHHhhhcCCCCe-eEEEEEeCCCCCC-C-hhHHHHHHhCCCCEEEeC
Q 023530 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPV-EITCVISNHDRGP-N-SHVIRFLERHGIPYHYLC 188 (281)
Q Consensus 128 ~~rIavl~Sg~G--snL~aLl~~~~~g~l~~-eI~~Visn~pd~~-~-a~~~~~A~~~gIP~~~i~ 188 (281)
+.||++..||+- +.+-.++.. .+.. ++.+|..|+.-++ + ..+.+.|+++|||+++++
T Consensus 2 ~~kVvvA~SGGvDSsvll~lL~e----~~g~~~Viav~vd~g~~~~e~~~a~~~a~~lGi~~~vvd 63 (394)
T PRK13820 2 MKKVVLAYSGGLDTSVCVPLLKE----KYGYDEVITVTVDVGQPEEEIKEAEEKAKKLGDKHYTID 63 (394)
T ss_pred CCeEEEEEeCcHHHHHHHHHHHH----hcCCCEEEEEEEECCCChHHHHHHHHHHHHcCCCEEEEe
Confidence 458999999983 444444432 1234 7888888763211 1 247889999999999988
No 272
>PRK09034 aspartate kinase; Reviewed
Probab=58.36 E-value=44 Score=33.29 Aligned_cols=62 Identities=18% Similarity=0.177 Sum_probs=44.5
Q ss_pred ccEEEEEEcC---CCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhh
Q 023530 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (281)
Q Consensus 41 ~~~iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l 113 (281)
.-..|+++|. +++|+.+++-+.|+++|+||.-++|... + ..+.+-++. ++..++++.+-++|
T Consensus 384 ~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~S---e---~~Is~vV~~-----~d~~~av~~LH~~f 448 (454)
T PRK09034 384 DLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSS---E---ISIMFGVKN-----EDAEKAVKAIYNAF 448 (454)
T ss_pred CEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCC---c---ceEEEEEcH-----HHHHHHHHHHHHHH
Confidence 5678999885 7899999999999999999999988432 2 244455543 44555555555555
No 273
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=58.22 E-value=40 Score=33.20 Aligned_cols=35 Identities=20% Similarity=0.177 Sum_probs=30.7
Q ss_pred ccEEEEEEcC---CCcchHHHHHHHHHhCCCeEeEeee
Q 023530 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADV 75 (281)
Q Consensus 41 ~~~iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q 75 (281)
.-..++++|. ++||+++++.+.|+++|+||.-+.+
T Consensus 377 ~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~~ 414 (441)
T TIGR00657 377 GLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMISS 414 (441)
T ss_pred CeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEEe
Confidence 4567889875 7899999999999999999988875
No 274
>PRK04998 hypothetical protein; Provisional
Probab=58.00 E-value=83 Score=24.15 Aligned_cols=68 Identities=13% Similarity=0.080 Sum_probs=44.7
Q ss_pred cccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEE-EEEEEEeCCCCCCHHHHHHHHHHHhhh
Q 023530 40 LTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSKM 112 (281)
Q Consensus 40 ~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~-mrlev~~p~~~~~~~~L~~~L~~la~~ 112 (281)
+..|-+.++|+..++.+++|..++.++...-..+.+. .+..|.|. ..+.+.+. +.+++.+-++++.+.
T Consensus 13 Pc~~~~Kvig~~~~~~~~~v~~v~~~~~~~~~~~~~r-~S~~GkY~Svtv~v~v~----s~eq~~~iY~~L~~~ 81 (88)
T PRK04998 13 PCSFTYKVMGLARPELVDQVVEVVQRHAPGDYTPTVK-PSSKGNYHSVSITITAT----SIEQVETLYEELAKI 81 (88)
T ss_pred CCCceEEEEEeCcHhHHHHHHHHHHHhCCCCCCceEc-cCCCCEEEEEEEEEEEC----CHHHHHHHHHHHhcC
Confidence 3568999999999999999999998774432112221 23478885 34555544 466666666666543
No 275
>PRK14435 acylphosphatase; Provisional
Probab=57.95 E-value=45 Score=25.74 Aligned_cols=60 Identities=20% Similarity=0.150 Sum_probs=46.0
Q ss_pred HHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeC
Q 023530 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISN 164 (281)
Q Consensus 101 ~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn 164 (281)
-+|......|.++|+..|..+..+ -.|-+.+.|....++++++.++.|...+.|.-|-..
T Consensus 16 GFR~~v~~~A~~~gl~G~V~N~~d----G~Vei~~~G~~~~i~~f~~~l~~gp~~a~V~~v~~~ 75 (90)
T PRK14435 16 GFRYFTRRVAKSLGVKGYVMNMDD----GSVFIHAEGDENALRRFLNEVAKGPPAAVVTNVSVE 75 (90)
T ss_pred CChHHHHHHHHHhCCEEEEEECCC----CCEEEEEEECHHHHHHHHHHHhhCCCCcEEEEEEEE
Confidence 367888889999999998644333 258888899989999999998877545777766554
No 276
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=57.83 E-value=27 Score=30.47 Aligned_cols=117 Identities=14% Similarity=0.198 Sum_probs=54.0
Q ss_pred CeeEEEEeeCC-hhH-HHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC---CCCC------ChH-
Q 023530 128 KYKVAVLASKQ-EHC-LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC---AKEN------ERE- 195 (281)
Q Consensus 128 ~~rIavl~Sg~-Gsn-L~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~---~k~~------~~e- 195 (281)
.++|+|++-|+ |+. .++|-| +| +-.+|.++ ++..-.+.|++.|..+..+. .+.+ .++
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrD---SG-----~~V~Vglr---~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~L~PD~~ 72 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRD---SG-----VNVIVGLR---EGSASWEKAKADGFEVMSVAEAVKKADVVMLLLPDEV 72 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHH---CC------EEEEEE----TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE-S-HHH
T ss_pred CCEEEEECCChHHHHHHHHHHh---CC-----CCEEEEec---CCCcCHHHHHHCCCeeccHHHHHhhCCEEEEeCChHH
Confidence 46899999987 421 122222 33 44567777 45567889999998776554 1110 011
Q ss_pred ------HHHHHHHh-CCCEEEEec----ccccCChhHHhhhcCCceeccCCCCCCCCCCCCchhHHHHhcCCCcceeeee
Q 023530 196 ------EELLELVQ-NTDFLVLAR----YMQPVPLQKEAYLGYKLLESLSSKGSLTSYFNMHMPKHMILTDKGCLCSTRI 264 (281)
Q Consensus 196 ------~~l~~~L~-~~DlIVLAg----YMrILs~~fl~~~~~riINSLLP~f~G~g~~g~~vh~a~l~~d~g~~~~~~~ 264 (281)
+++...|+ ..-|++.-| |.+|.+|+-++-. -.-|+-+| .-| |....-.+|.+++.-+
T Consensus 73 q~~vy~~~I~p~l~~G~~L~fahGfni~~~~i~pp~~vdV~------mvAPKgpG-----~~v-R~~y~~G~Gvp~l~AV 140 (165)
T PF07991_consen 73 QPEVYEEEIAPNLKPGATLVFAHGFNIHYGLIKPPKDVDVI------MVAPKGPG-----HLV-RREYVEGRGVPALIAV 140 (165)
T ss_dssp HHHHHHHHHHHHS-TT-EEEESSSHHHHCTTS---TTSEEE------EEEESSSC-----HHH-HHHHHCCTS--EEEEE
T ss_pred HHHHHHHHHHhhCCCCCEEEeCCcchhhcCcccCCCCCeEE------EEecCCCC-----hHH-HHHHHcCCCceEEEEE
Confidence 22222333 233333323 4455544422221 24477667 344 4444456799988776
Q ss_pred ecc
Q 023530 265 SQG 267 (281)
Q Consensus 265 ~~~ 267 (281)
-|-
T Consensus 141 ~qD 143 (165)
T PF07991_consen 141 HQD 143 (165)
T ss_dssp EE-
T ss_pred EEC
Confidence 664
No 277
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=57.66 E-value=50 Score=24.49 Aligned_cols=59 Identities=12% Similarity=0.174 Sum_probs=34.8
Q ss_pred CeeEEEEeeCChh---HHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC
Q 023530 128 KYKVAVLASKQEH---CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (281)
Q Consensus 128 ~~rIavl~Sg~Gs---nL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~ 188 (281)
.+||+|-+|..-+ -+.+-|+.+.... .++++|-.-.|..-+.-+.++|+++|||+..++
T Consensus 3 g~rVli~GgR~~~D~~~i~~~Ld~~~~~~--~~~~lvhGga~~GaD~iA~~wA~~~gv~~~~~~ 64 (71)
T PF10686_consen 3 GMRVLITGGRDWTDHELIWAALDKVHARH--PDMVLVHGGAPKGADRIAARWARERGVPVIRFP 64 (71)
T ss_pred CCEEEEEECCccccHHHHHHHHHHHHHhC--CCEEEEECCCCCCHHHHHHHHHHHCCCeeEEeC
Confidence 3578887776643 3333355444432 234433333222234567889999999999887
No 278
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=57.63 E-value=2e+02 Score=28.30 Aligned_cols=69 Identities=14% Similarity=0.045 Sum_probs=44.4
Q ss_pred CCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccce---eeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcC
Q 023530 81 KNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRS---VVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEG 152 (281)
Q Consensus 81 ~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~~---~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g 152 (281)
.|.|-+.++=--|. + ..+|...|+++-++|--+.+ .-+.+-+.-+.||||..|.+|..++|++..++.-
T Consensus 88 ~g~~ql~v~~i~~~-g--~G~l~~~~~~lk~~L~~eGlfd~~~k~~lP~~p~~I~viTs~~gAa~~D~~~~~~~r 159 (438)
T PRK00286 88 RGDYQLIVEEIEPA-G--IGALAAAFEQLKEKLAAEGLFDPERKKPLPFFPKRIGVITSPTGAAIRDILTVLRRR 159 (438)
T ss_pred CCCEEEEEEEeeeC-C--ccHHHHHHHHHHHHHHHCCCCChhhcCCCCCCCCEEEEEeCCccHHHHHHHHHHHhc
Confidence 55555444322233 3 37788888888776654432 1112223447899999999999999998877654
No 279
>PRK14432 acylphosphatase; Provisional
Probab=57.30 E-value=54 Score=25.53 Aligned_cols=60 Identities=12% Similarity=0.036 Sum_probs=45.3
Q ss_pred HHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEee-CChhHHHHHHHhhhcCCCCeeEEEEEeC
Q 023530 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLAS-KQEHCLVDFLYGWQEGKLPVEITCVISN 164 (281)
Q Consensus 101 ~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~S-g~GsnL~aLl~~~~~g~l~~eI~~Visn 164 (281)
-+|.....+|.++++..|..++.+- .|-+.+. |....++++++.++.|.-.+.|.-|-..
T Consensus 16 GFR~~v~~~A~~lgl~G~V~N~~dG----~Vei~~~~G~~~~v~~f~~~l~~gp~~a~V~~v~~~ 76 (93)
T PRK14432 16 GFRFFTEQIANNMKLKGFVKNLNDG----RVEIVAFFNTKEQMKKFEKLLKNGNKYSNIENIEKK 76 (93)
T ss_pred eehHHHHHHHHHhCCEEEEEECCCC----CEEEEEEECCHHHHHHHHHHHHhCCCccEEEEEEEE
Confidence 3678888999999999987654332 5778886 8888999999998887434677665543
No 280
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=57.29 E-value=34 Score=33.38 Aligned_cols=89 Identities=22% Similarity=0.352 Sum_probs=57.6
Q ss_pred CCeeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCC-CCCCC---------hhHHHHHHhCCCCEEEeC-CCCC--
Q 023530 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNH-DRGPN---------SHVIRFLERHGIPYHYLC-AKEN-- 192 (281)
Q Consensus 127 ~~~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~-pd~~~---------a~~~~~A~~~gIP~~~i~-~k~~-- 192 (281)
.++||+|..||+ +|.+-|.+-. ++| .+|.+|.-+. .+... ..+...|+..|||+++++ .+..
T Consensus 2 ~~~kV~v~mSGGVDSSVaA~lLk-~QG---yeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~vdf~~~y~~ 77 (356)
T COG0482 2 KKKKVLVGMSGGVDSSVAAYLLK-EQG---YEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVVDFEKEFWN 77 (356)
T ss_pred CCcEEEEEccCCHHHHHHHHHHH-HcC---CeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCCceEEEchHHHHHH
Confidence 367999999998 4555554332 235 5888876544 21111 147889999999999998 3310
Q ss_pred ----------------------ChH---HHHHHHHh--CCCEEEEecccccCCh
Q 023530 193 ----------------------ERE---EELLELVQ--NTDFLVLARYMQPVPL 219 (281)
Q Consensus 193 ----------------------~~e---~~l~~~L~--~~DlIVLAgYMrILs~ 219 (281)
+.+ ..+++.++ ++|+|+.-=|.|+-..
T Consensus 78 ~V~~~f~~~Y~~G~TPNPci~CN~~iKF~~~l~~a~~lgad~iATGHYar~~~~ 131 (356)
T COG0482 78 KVFEYFLAEYKAGKTPNPCILCNKEIKFKALLDYAKELGADYIATGHYARQRED 131 (356)
T ss_pred HHHHHHHHHHhCCCCCCcchhcCHHHHHHHHHHHHHHcCCCeEEEeeeEeeecC
Confidence 011 23444433 7999999999988763
No 281
>PRK09181 aspartate kinase; Validated
Probab=57.28 E-value=41 Score=33.88 Aligned_cols=64 Identities=20% Similarity=0.292 Sum_probs=47.8
Q ss_pred ccEEEEEEcCC--CcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcc
Q 023530 41 THGIHVFHCPD--EVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (281)
Q Consensus 41 ~~~iltV~G~D--rpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l 115 (281)
.-.+|+++|.. +||+.+++-+.|++.|+||.-++|... .. .+.+-++ .++.++++..+-++|..
T Consensus 401 ~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~qg~s---e~---~Is~vV~-----~~d~~~Av~~lH~~f~~ 466 (475)
T PRK09181 401 KVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQSMR---QV---NMQFVVD-----EDDYEKAICALHEALVE 466 (475)
T ss_pred CceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEecCC---cc---eEEEEEe-----HHHHHHHHHHHHHHHhc
Confidence 55789999975 899999999999999999999998532 11 2333333 35677888888777753
No 282
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=57.11 E-value=64 Score=22.47 Aligned_cols=32 Identities=6% Similarity=0.073 Sum_probs=24.7
Q ss_pred EEEEEEcC---CCcchHHHHHHHHHhCCCeEeEeeee
Q 023530 43 GIHVFHCP---DEVGIVAKLSECIASRGGNILAADVF 76 (281)
Q Consensus 43 ~iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q~ 76 (281)
..++++|. +++|+.+++.+.|++ ++|.=++|.
T Consensus 2 alIsvvG~~~~~~~~v~~~i~~~L~~--i~i~~i~~~ 36 (64)
T cd04917 2 ALVALIGNDISETAGVEKRIFDALED--INVRMICYG 36 (64)
T ss_pred eEEEEECCCccCCcCHHHHHHHHHHh--CCeEEEEEe
Confidence 36888897 789999999999976 555555553
No 283
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=56.35 E-value=44 Score=30.86 Aligned_cols=72 Identities=10% Similarity=0.200 Sum_probs=37.7
Q ss_pred CeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCC-CCChHHHHHHHHh--C
Q 023530 128 KYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAK-ENEREEELLELVQ--N 204 (281)
Q Consensus 128 ~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k-~~~~e~~l~~~L~--~ 204 (281)
|+||.|++.|.+. ++++..+.-.-..+|. +++.. +.+++...|.+ ++.++.. ...+-+++.++++ +
T Consensus 1 ~~~vLv~g~~~~~---~~~~~l~~~~~g~~vi--~~d~~--~~~~~~~~~d~----~~~~p~~~~~~~~~~l~~~~~~~~ 69 (326)
T PRK12767 1 MMNILVTSAGRRV---QLVKALKKSLLKGRVI--GADIS--ELAPALYFADK----FYVVPKVTDPNYIDRLLDICKKEK 69 (326)
T ss_pred CceEEEecCCccH---HHHHHHHHhccCCEEE--EECCC--CcchhhHhccC----cEecCCCCChhHHHHHHHHHHHhC
Confidence 5788888888775 4454443321013444 34321 45666665543 2333311 1112356777776 7
Q ss_pred CCEEEE
Q 023530 205 TDFLVL 210 (281)
Q Consensus 205 ~DlIVL 210 (281)
+|+|+.
T Consensus 70 id~ii~ 75 (326)
T PRK12767 70 IDLLIP 75 (326)
T ss_pred CCEEEE
Confidence 998775
No 284
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=56.08 E-value=73 Score=31.94 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=32.5
Q ss_pred CcccEEEEEEcCC---CcchHHHHHHHHHhCCCeEeEeeeecc
Q 023530 39 TLTHGIHVFHCPD---EVGIVAKLSECIASRGGNILAADVFVP 78 (281)
Q Consensus 39 ~~~~~iltV~G~D---rpGIVa~VS~~La~~giNI~dl~q~~~ 78 (281)
......|++.|+- ++|..++|...|+++|+|+.-+.|...
T Consensus 304 ~~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~ 346 (447)
T COG0527 304 DDNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSIS 346 (447)
T ss_pred CCCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccC
Confidence 3455678888763 459999999999999999999988653
No 285
>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=55.99 E-value=20 Score=34.26 Aligned_cols=54 Identities=15% Similarity=0.184 Sum_probs=37.8
Q ss_pred CCeeEEEEeeCCh-hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC
Q 023530 127 PKYKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (281)
Q Consensus 127 ~~~rIavl~Sg~G-snL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~ 188 (281)
.+++|+|.+|..| .-|.++..... ..+.+++...- ...-+++|+++|||.++-+
T Consensus 3 ~pksVvV~GtrFGq~Ylaaf~~~~~----~~eLaGiLaqG----SeRSRaLAh~~GVply~~~ 57 (361)
T COG4693 3 DPKSVVVCGTRFGQFYLAAFAAAPP----RFELAGILAQG----SERSRALAHRLGVPLYCEV 57 (361)
T ss_pred CCceEEEecchHHHHHHHHhccCCC----Cceeehhhhcc----cHHHHHHHHHhCCccccCH
Confidence 3459999999998 44444433321 25888888864 3446889999999988843
No 286
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=55.48 E-value=50 Score=32.45 Aligned_cols=78 Identities=17% Similarity=0.189 Sum_probs=50.5
Q ss_pred CeeEEEEeeCC--hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCC-------------
Q 023530 128 KYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN------------- 192 (281)
Q Consensus 128 ~~rIavl~Sg~--GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~------------- 192 (281)
++||.||+|.+ |++--+++.+. ++ .++|+++.+++ --....+-+++|+-.+..+.....
T Consensus 1 ~k~i~iLGSTGSIG~qtLdVi~~~--p~-~f~vval~ag~---n~~~l~~q~~~f~P~~v~~~d~~~~~~l~~~~~~~~v 74 (385)
T COG0743 1 MKKLTILGSTGSIGTQTLDVIRRN--PD-KFEVVALAAGK---NVELLAEQIREFKPKYVVIADESAAKELEDLLPGTEV 74 (385)
T ss_pred CceEEEEecCCchhHHHHHHHHhC--CC-cEEEEEEecCC---cHHHHHHHHHHhCCceEEecChHHHHHHHhhccCceE
Confidence 57999999987 56666667653 22 47899998886 234677889999966654431110
Q ss_pred -ChHHHHHHHHh--CCCEEEEe
Q 023530 193 -EREEELLELVQ--NTDFLVLA 211 (281)
Q Consensus 193 -~~e~~l~~~L~--~~DlIVLA 211 (281)
.-++.+.++.. ++|.|+-|
T Consensus 75 ~~G~~~l~e~a~~~~~d~Vm~A 96 (385)
T COG0743 75 LVGEEGLCELAAEDDADVVMNA 96 (385)
T ss_pred EecHHHHHHHHhcCCCCEEeeh
Confidence 01345666666 67877765
No 287
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=55.09 E-value=40 Score=29.29 Aligned_cols=70 Identities=13% Similarity=0.109 Sum_probs=37.9
Q ss_pred HHHHHHHhhhcCCCCeeEEEEEeCCC----CCCChhHHHHHHhCCCCEEEeC-CCCCChHHHHHHHHh-C-----CCEEE
Q 023530 141 CLVDFLYGWQEGKLPVEITCVISNHD----RGPNSHVIRFLERHGIPYHYLC-AKENEREEELLELVQ-N-----TDFLV 209 (281)
Q Consensus 141 nL~aLl~~~~~g~l~~eI~~Visn~p----d~~~a~~~~~A~~~gIP~~~i~-~k~~~~e~~l~~~L~-~-----~DlIV 209 (281)
-+.+-++.+++-. ..+=++|+||.. |.....+...++..|||+.... .|... -+++++.++ + ++=++
T Consensus 63 ~~~~~~~~l~~~~-~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpvl~h~~kKP~~-~~~i~~~~~~~~~~~~p~eia 140 (168)
T PF09419_consen 63 EYAEWLNELKKQF-GKDRVLIVSNSAGSSDDPDGERAEALEKALGIPVLRHRAKKPGC-FREILKYFKCQKVVTSPSEIA 140 (168)
T ss_pred HHHHHHHHHHHHC-CCCeEEEEECCCCcccCccHHHHHHHHHhhCCcEEEeCCCCCcc-HHHHHHHHhhccCCCCchhEE
Confidence 3444455544321 122356889962 1012346778899999988766 33222 235666665 3 55555
Q ss_pred Eec
Q 023530 210 LAR 212 (281)
Q Consensus 210 LAg 212 (281)
+.|
T Consensus 141 vIG 143 (168)
T PF09419_consen 141 VIG 143 (168)
T ss_pred EEc
Confidence 544
No 288
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=54.85 E-value=48 Score=31.27 Aligned_cols=55 Identities=16% Similarity=0.057 Sum_probs=38.3
Q ss_pred eEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCC---hhHHHHHHhCCC-CEEEeC
Q 023530 130 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN---SHVIRFLERHGI-PYHYLC 188 (281)
Q Consensus 130 rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~~---a~~~~~A~~~gI-P~~~i~ 188 (281)
|++|..||+- +.+..++... .| .++.+|..|++-.+. ..+.+.|+++|+ |+++++
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~-lG---~~v~aV~vd~g~~~~~E~~~~~~~~~~~g~i~~~vvd 61 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKA-IG---DRLTCVFVDNGLLRKNEAERVEELFSKLLGINLIVVD 61 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHH-hC---CcEEEEEecCCCCChHHHHHHHHHHHHhCCCcEEEEc
Confidence 6889999983 5555555532 24 368888888754322 357788888886 999987
No 289
>PRK06291 aspartate kinase; Provisional
Probab=54.83 E-value=49 Score=32.99 Aligned_cols=64 Identities=16% Similarity=0.162 Sum_probs=45.7
Q ss_pred ccEEEEEEcC---CCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcc
Q 023530 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNA 115 (281)
Q Consensus 41 ~~~iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l 115 (281)
.-.+|+++|. +++|+.+++.+.|++.|+||.-++|... +. .+.+-++ .++..++++.+-++|.+
T Consensus 397 ~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgsS---e~---~Is~vV~-----~~d~~~av~~Lh~~f~~ 463 (465)
T PRK06291 397 DVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGSS---EV---NISFVVD-----EEDGERAVKVLHDEFIL 463 (465)
T ss_pred CEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEeccc---cC---eEEEEEe-----HHHHHHHHHHHHHHhcc
Confidence 4578999997 7999999999999999999999888542 21 2233333 24456666666666643
No 290
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=54.72 E-value=84 Score=29.91 Aligned_cols=108 Identities=8% Similarity=-0.009 Sum_probs=63.8
Q ss_pred CCCCccCCCCCCC------CcccEEEEEEcC-CCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCC
Q 023530 26 KFPGEPIESSVSP------TLTHGIHVFHCP-DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWP 98 (281)
Q Consensus 26 ~~~~~~~~~~~~~------~~~~~iltV~G~-DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~ 98 (281)
.||+.|+.-+..+ ...+..+.+.|. -.+..+..+.+.+...+.|+-... + +.|... .+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~---~~------ 79 (322)
T PRK11133 15 LWPGLPLSLSGDEVMPLDYRAGRSGWLLYGRGLDKQRLTDFQRKLGAAMVIVAAWC--V----EDYQVV---RL------ 79 (322)
T ss_pred ccCCCCcccccccccccccccccceEEEECCCCCHHHHHHHHHHHhhccceeeeee--c----ccccee---ec------
Confidence 5788886555443 123345566665 577899999999999988882211 1 112111 01
Q ss_pred HHHHHHHHHHHhhhhcccceeeeecCCCCCeeEEEE-eeCC---hhHHHHHHHh
Q 023530 99 REQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVL-ASKQ---EHCLVDFLYG 148 (281)
Q Consensus 99 ~~~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl-~Sg~---GsnL~aLl~~ 148 (281)
...|+.++..++.++++|+-..+-...-+..|+++| .=|+ ..+.+.+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~LvvfDmDGTLI~~e~i~eia~~ 133 (322)
T PRK11133 80 AGSLTPRATRLAHELGLDVAPLGKIPHLRTPGLLVMDMDSTAIQIECIDEIAKL 133 (322)
T ss_pred hhhHHHHHHHHHhhcCCcEEEecCcccccCCCEEEEECCCCCcchHHHHHHHHH
Confidence 145999999999999999542221222345677776 1111 2455655554
No 291
>PRK03868 glucose-6-phosphate isomerase; Provisional
Probab=54.32 E-value=46 Score=32.89 Aligned_cols=56 Identities=11% Similarity=0.110 Sum_probs=36.4
Q ss_pred eeEEEEeeCChhHHHHHHH------hhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC
Q 023530 129 YKVAVLASKQEHCLVDFLY------GWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (281)
Q Consensus 129 ~rIavl~Sg~GsnL~aLl~------~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~ 188 (281)
.-++|.+|++|+..+-+.. ..+.+.-.+....++|+. +.+..++|+++|++++.++
T Consensus 112 ~TlviviSKSGtT~ETl~~~~~~~~~~~~~~~~~~~~v~vTd~----~s~L~~~a~~~g~~~f~ip 173 (410)
T PRK03868 112 NTLFIVISKSGTTIETISIFKYLLSHFKLDQELKKNFLFITDP----DSKLEQFAKENNIKCFNIP 173 (410)
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHHHhccccccccEEEEEecC----CchHHHhHHhcCCcEEecC
Confidence 3578899999966665432 221110123444567763 4468999999999999987
No 292
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=54.20 E-value=67 Score=29.80 Aligned_cols=79 Identities=10% Similarity=0.103 Sum_probs=45.4
Q ss_pred CeeEEEEeeCCh---hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCC-CC--CC--------
Q 023530 128 KYKVAVLASKQE---HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA-KE--NE-------- 193 (281)
Q Consensus 128 ~~rIavl~Sg~G---snL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~-k~--~~-------- 193 (281)
||||.|.+.|.| +...+|...+... ..++.++..+. ....+..++.|++++.++. .. ..
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~~--g~ev~vv~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~ 73 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKKR--GWEVLYLGTAR-----GMEARLVPKAGIEFHFIPSGGLRRKGSLANLKAP 73 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHhC--CCEEEEEECCC-----chhhhccccCCCcEEEEeccCcCCCChHHHHHHH
Confidence 478888876665 2223566655442 35776554432 1123445567999998872 11 11
Q ss_pred --h---HHHHHHHHh--CCCEEEEecc
Q 023530 194 --R---EEELLELVQ--NTDFLVLARY 213 (281)
Q Consensus 194 --~---e~~l~~~L~--~~DlIVLAgY 213 (281)
. -.++.+.++ ++|+|+.-++
T Consensus 74 ~~~~~~~~~~~~~ik~~~pDvv~~~~~ 100 (357)
T PRK00726 74 FKLLKGVLQARKILKRFKPDVVVGFGG 100 (357)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 0 023455566 6999999874
No 293
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=53.22 E-value=30 Score=30.49 Aligned_cols=56 Identities=23% Similarity=0.156 Sum_probs=40.0
Q ss_pred eeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCC-CChhHHHHHHhCCCCEEEeC
Q 023530 129 YKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRG-PNSHVIRFLERHGIPYHYLC 188 (281)
Q Consensus 129 ~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~-~~a~~~~~A~~~gIP~~~i~ 188 (281)
|++.+|.||+ +|.|.|++-. .+..++.+|-+|---. .-.++.+-|+..|.|+.++.
T Consensus 1 m~v~vLfSGGKDSSLaA~iL~----klgyev~LVTvnFGv~d~~k~A~~tA~~lgF~h~vl~ 58 (198)
T COG2117 1 MDVYVLFSGGKDSSLAALILD----KLGYEVELVTVNFGVLDSWKYARETAAILGFPHEVLQ 58 (198)
T ss_pred CceEEEecCCCchhHHHHHHH----HhCCCcEEEEEEeccccchhhHHHHHHHhCCCcceec
Confidence 4788999987 5889887652 3346777777664111 13578899999999988876
No 294
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=53.14 E-value=48 Score=27.47 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=29.1
Q ss_pred hHHHHHHhCCCCEEEeC-CCCCChHHHHHHHHh----CCCEEEEecccccCChhH
Q 023530 172 HVIRFLERHGIPYHYLC-AKENEREEELLELVQ----NTDFLVLARYMQPVPLQK 221 (281)
Q Consensus 172 ~~~~~A~~~gIP~~~i~-~k~~~~e~~l~~~L~----~~DlIVLAgYMrILs~~f 221 (281)
...++.+++|+.+.... -.+ + .++|.+.++ ++|+||+.|=.-.=..++
T Consensus 31 ~l~~~l~~~G~~v~~~~~v~D-d-~~~i~~~l~~~~~~~DliIttGG~g~g~~D~ 83 (144)
T TIGR00177 31 LLAALLEEAGFNVSRLGIVPD-D-PEEIREILRKAVDEADVVLTTGGTGVGPRDV 83 (144)
T ss_pred HHHHHHHHCCCeEEEEeecCC-C-HHHHHHHHHHHHhCCCEEEECCCCCCCCCcc
Confidence 45667889998877654 221 1 233444433 799999998555444443
No 295
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=52.95 E-value=48 Score=31.40 Aligned_cols=78 Identities=15% Similarity=0.144 Sum_probs=41.1
Q ss_pred CeeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC--CCCCChHHHHHHHHhC
Q 023530 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC--AKENEREEELLELVQN 204 (281)
Q Consensus 128 ~~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~--~k~~~~e~~l~~~L~~ 204 (281)
++||+|.+.|. |+.+...+. .+.+..+++++=.|. ++...-+.++. +..|+.... .....+ +.+++
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~---~~~~~~el~LiD~~~-~~~~g~a~Dl~--~~~~~~~~~~v~~~~dy-----~~~~~ 71 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISIL---AKGLADELVLVDVVE-DKLKGEAMDLQ--HGSAFLKNPKIEADKDY-----SVTAN 71 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHH---hcCCCCEEEEEeCCc-cHHHHHHHHHH--HhhccCCCCEEEECCCH-----HHhCC
Confidence 56999999988 543333332 245566888876663 22122233332 333332111 000112 23568
Q ss_pred CCEEEE-eccccc
Q 023530 205 TDFLVL-ARYMQP 216 (281)
Q Consensus 205 ~DlIVL-AgYMrI 216 (281)
+|+||. ||-.+.
T Consensus 72 adivvitaG~~~k 84 (312)
T cd05293 72 SKVVIVTAGARQN 84 (312)
T ss_pred CCEEEECCCCCCC
Confidence 999988 887765
No 296
>PRK14443 acylphosphatase; Provisional
Probab=52.84 E-value=68 Score=25.10 Aligned_cols=59 Identities=17% Similarity=0.151 Sum_probs=46.2
Q ss_pred HHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCC-CeeEEEEEeC
Q 023530 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKL-PVEITCVISN 164 (281)
Q Consensus 102 L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l-~~eI~~Visn 164 (281)
+|......|.++++..|..++.+. +|-+.+.|.-..++.+++.++.|.- .+.|..|...
T Consensus 19 FR~~~~~~A~~~gl~G~V~N~~dG----~Vei~~qG~~~~l~~f~~~l~~g~p~~a~V~~v~~~ 78 (93)
T PRK14443 19 FRYTTKHVAYKYDISGTVKNLDDG----SVEIHAIAEEENLNKFIDAIKKGPSPGCRIEHVYIY 78 (93)
T ss_pred CcHHHHHHHHHcCCEEEEEECCCC----EEEEEEECCHHHHHHHHHHHhcCCCCcEEEEEEEEE
Confidence 577788899999999986544332 6888999998999999999988764 4778776553
No 297
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=52.74 E-value=67 Score=30.96 Aligned_cols=70 Identities=16% Similarity=0.190 Sum_probs=39.1
Q ss_pred eEEEEe---------eCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHH----HHHHhCCCCEEEeCCCCCChHH
Q 023530 130 KVAVLA---------SKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVI----RFLERHGIPYHYLCAKENEREE 196 (281)
Q Consensus 130 rIavl~---------Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~----~~A~~~gIP~~~i~~k~~~~e~ 196 (281)
|+.||. ||.|+.+.-|..+.+.|. .+..+++ +.+|...+. ..-.+.|||+.++.. .
T Consensus 147 ~~~ILThcnsg~lat~~~gtal~~l~~A~~~g~---~~~V~v~--EsrP~~qG~rlta~~L~~~GI~vtlI~D------s 215 (331)
T TIGR00512 147 PLRVLTHCNTGSLATAGYGTALGVIRSAHEKGR---LEHVYAD--ETRPRLQGARLTAWELVQEGIPATLITD------S 215 (331)
T ss_pred CceEEeecCCccccccccchHHHHHHHHHHcCC---ceEEEEC--CCCchhhHHHHHHHHHHHCCCCEEEEcc------c
Confidence 556776 345677776667766664 2333333 223432222 334678999999872 1
Q ss_pred HHHHHHh--CCCEEEE
Q 023530 197 ELLELVQ--NTDFLVL 210 (281)
Q Consensus 197 ~l~~~L~--~~DlIVL 210 (281)
.+--+++ ++|.|++
T Consensus 216 av~~~m~~~~vd~Viv 231 (331)
T TIGR00512 216 MAAHLMKHGEVDAVIV 231 (331)
T ss_pred HHHHHhcccCCCEEEE
Confidence 2334444 5776665
No 298
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=52.45 E-value=59 Score=30.38 Aligned_cols=68 Identities=21% Similarity=0.289 Sum_probs=38.7
Q ss_pred CeeEEEEeeCChhHHHHHHHhhh-cCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHhCCC
Q 023530 128 KYKVAVLASKQEHCLVDFLYGWQ-EGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (281)
Q Consensus 128 ~~rIavl~Sg~GsnL~aLl~~~~-~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~~~D 206 (281)
++||+|++-|+= -++|+..+. +|.++.+- .++||+ .......+++++|+.. . ++ . .+..++.|
T Consensus 1 ~~~IgfIG~G~M--g~Ai~~gl~~~g~~~~~~-I~v~~~---~~e~~~~l~~~~g~~~-~-~~-----~---~~~~~~ad 64 (266)
T COG0345 1 MMKIGFIGAGNM--GEAILSGLLKSGALPPEE-IIVTNR---SEEKRAALAAEYGVVT-T-TD-----N---QEAVEEAD 64 (266)
T ss_pred CceEEEEccCHH--HHHHHHHHHhcCCCCcce-EEEeCC---CHHHHHHHHHHcCCcc-c-Cc-----H---HHHHhhCC
Confidence 468999998872 234444433 34344222 356774 2233446899999884 2 11 1 13333789
Q ss_pred EEEEe
Q 023530 207 FLVLA 211 (281)
Q Consensus 207 lIVLA 211 (281)
+|+||
T Consensus 65 vv~La 69 (266)
T COG0345 65 VVFLA 69 (266)
T ss_pred EEEEE
Confidence 99998
No 299
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=52.18 E-value=66 Score=31.22 Aligned_cols=56 Identities=20% Similarity=0.064 Sum_probs=37.6
Q ss_pred CeeEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCC-----hhHHHHHHhCCCCEEEeC
Q 023530 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN-----SHVIRFLERHGIPYHYLC 188 (281)
Q Consensus 128 ~~rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~~-----a~~~~~A~~~gIP~~~i~ 188 (281)
..||+|..||+- +.+-.|+.. .| .++.+|.-|..+... ..+.+.|+++|||+++++
T Consensus 5 ~~kVlValSGGVDSsvaa~LL~~--~G---~~V~~v~~~~~~~~~~~~d~~~a~~va~~LgIp~~vvd 67 (360)
T PRK14665 5 NKRVLLGMSGGTDSSVAAMLLLE--AG---YEVTGVTFRFYEFNGSTEYLEDARALAERLGIGHITYD 67 (360)
T ss_pred CCEEEEEEcCCHHHHHHHHHHHH--cC---CeEEEEEEecCCCCCChHHHHHHHHHHHHhCCCEEEEe
Confidence 458999999983 444445543 34 578777665422111 136789999999999987
No 300
>PLN02551 aspartokinase
Probab=51.86 E-value=52 Score=33.60 Aligned_cols=62 Identities=13% Similarity=0.131 Sum_probs=43.8
Q ss_pred ccEEEEEEcC--CCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhh
Q 023530 41 THGIHVFHCP--DEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (281)
Q Consensus 41 ~~~iltV~G~--DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l 113 (281)
.-.+|+++|. .++|+.+++-+.|+++|+||.-++|... . ..+.+-++ .++..++++.+-++|
T Consensus 444 ~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqgaS---e---inIS~vV~-----~~d~~~Av~aLH~~F 507 (521)
T PLN02551 444 GRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGAS---K---VNISLIVN-----DDEAEQCVRALHSAF 507 (521)
T ss_pred CEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecCC---C---cEEEEEEe-----HHHHHHHHHHHHHHH
Confidence 5578899986 6899999999999999999999998432 1 12333333 244566666665555
No 301
>PF04359 DUF493: Protein of unknown function (DUF493); InterPro: IPR007454 This family includes several proteins of uncharacterised function.; PDB: 1RWU_A 2JOQ_A 2H9Z_A.
Probab=51.74 E-value=28 Score=26.34 Aligned_cols=70 Identities=14% Similarity=0.101 Sum_probs=45.0
Q ss_pred CcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeec-cCCCCeEE-EEEEEEeCCCCCCHHHHHHHHHHHhhh
Q 023530 39 TLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV-PEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSKM 112 (281)
Q Consensus 39 ~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~-~~~~g~F~-mrlev~~p~~~~~~~~L~~~L~~la~~ 112 (281)
.+..|.+.++|++..+.+.+|..++.++-.++.+..... .+..|.|. ..+.+.+. +.+++.+-++++.+.
T Consensus 7 fP~~y~~KvIg~~~~~~~~~v~~iv~~~~~~~~~~~~~~k~S~~GkY~Svtv~v~v~----s~eq~~~iy~~L~~~ 78 (85)
T PF04359_consen 7 FPCDYPFKVIGKAEEDFVEAVKEIVEKHAPEFDDEKVSSKPSSKGKYVSVTVSVTVE----SAEQVDAIYRELKAH 78 (85)
T ss_dssp SSCEEEEEEEEC-STTHHHHHCCCCCCHSS--SSEEEEECCSTTSSEEEEEEEEEES----SHHHHHHHHHHHTTS
T ss_pred CCCcceEEEEEECcHhHHHHHHHHHHHhCCcCccCceEEecCCCCeEEEEEEEEEEC----CHHHHHHHHHHhccC
Confidence 346799999999999999999999988754442222222 23478774 35555554 467777766666543
No 302
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=51.67 E-value=26 Score=27.14 Aligned_cols=45 Identities=11% Similarity=0.196 Sum_probs=29.5
Q ss_pred HHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCC
Q 023530 143 VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189 (281)
Q Consensus 143 ~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~ 189 (281)
..-+++++.|. +..+.+-.|-++.--.++...|+++|||+.++++
T Consensus 19 kqt~Kai~kg~--~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s 63 (84)
T PRK13600 19 KETLKALKKDQ--VTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKS 63 (84)
T ss_pred HHHHHHHhcCC--ceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 34566677674 4555555553211114788999999999999984
No 303
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=51.25 E-value=51 Score=28.42 Aligned_cols=54 Identities=19% Similarity=0.078 Sum_probs=34.1
Q ss_pred EEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCC---hhHHHHHHhCCCCEEEeC
Q 023530 131 VAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN---SHVIRFLERHGIPYHYLC 188 (281)
Q Consensus 131 Iavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~~---a~~~~~A~~~gIP~~~i~ 188 (281)
|+|+.||+- +.+-.++.. .+. .++.+|-.|+....+ ..+.+.|+++|||+++++
T Consensus 1 vvva~SGG~DS~~ll~ll~~--~~~--~~v~~v~vd~g~~~~~~~~~~~~~a~~lgi~~~~~~ 59 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVD--ALG--DRVLAVTATSPLFPRRELEEAKRLAKEIGIRHEVIE 59 (202)
T ss_pred CEEEccCCHHHHHHHHHHHH--HhC--CcEEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEEe
Confidence 578999983 444444433 221 267777777632111 246788999999999987
No 304
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=51.25 E-value=76 Score=36.71 Aligned_cols=78 Identities=13% Similarity=-0.049 Sum_probs=54.2
Q ss_pred CCCcccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeecc---C-C-------------CC--eEEEEEEEEeCCCCC
Q 023530 37 SPTLTHGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP---E-K-------------KN--VFYSRSEFIFDPIKW 97 (281)
Q Consensus 37 ~~~~~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~---~-~-------------~g--~F~mrlev~~p~~~~ 97 (281)
.-....-+|.|+++|.|=||..|+..|.++|+.|.-+..-+. + . ++ .-+|.++++-...+.
T Consensus 12 gw~~~~TvI~IV~dDmPFLVDSV~~~L~r~gl~I~~i~HPVl~V~RD~~G~L~~v~~~~~~~~~~ES~I~ieId~~~d~~ 91 (1528)
T PF05088_consen 12 GWESDHTVIEIVTDDMPFLVDSVRMELNRQGLTIHLIIHPVLNVERDADGKLVAVGPADDSGGTRESWIHIEIDRQSDPE 91 (1528)
T ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHhCCCceEEEecCcEEEEECCCCcEEEecCCCCCCCceEEEEEEEEcCCCCHH
Confidence 334457899999999999999999999999999988765430 1 0 12 335666666442234
Q ss_pred CHHHHHHHHHHHhhhhc
Q 023530 98 PREQMDEDFFKLSKMFN 114 (281)
Q Consensus 98 ~~~~L~~~L~~la~~l~ 114 (281)
..++|+++|+...++..
T Consensus 92 ~~~~L~~~L~~VL~dVr 108 (1528)
T PF05088_consen 92 ELEALREDLERVLEDVR 108 (1528)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56777777776655544
No 305
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=50.95 E-value=1.4e+02 Score=24.87 Aligned_cols=79 Identities=15% Similarity=0.155 Sum_probs=43.4
Q ss_pred eEEEEeeCCh-hHH-HHHHHhhhcCCCCeeEEEEEeCCCCCCC---hhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHh-
Q 023530 130 KVAVLASKQE-HCL-VDFLYGWQEGKLPVEITCVISNHDRGPN---SHVIRFLERHGIPYHYLCAKENEREEELLELVQ- 203 (281)
Q Consensus 130 rIavl~Sg~G-snL-~aLl~~~~~g~l~~eI~~Visn~pd~~~---a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~- 203 (281)
|++++.||+- |-+ -.++. +.| .++.++..+....+. ..+...|+++| |...++.........+.+..+
T Consensus 1 kvlv~~SGG~DS~~~~~~~~--~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~l~~~a~~ 74 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAK--KEG---YEVHALSFDYGQRHAKEEEAAKLIAEKLG-PSTYVPARNLIFLSIAAAYAEA 74 (169)
T ss_pred CEEEEecCcHHHHHHHHHHH--HcC---CcEEEEEEECCCCChhHHHHHHHHHHHHC-CCEEEeCcCHHHHHHHHHHHHH
Confidence 6899999983 433 32332 233 356666666422111 35677889999 776665221111122223323
Q ss_pred -CCCEEEEeccc
Q 023530 204 -NTDFLVLARYM 214 (281)
Q Consensus 204 -~~DlIVLAgYM 214 (281)
+.|.|+++-..
T Consensus 75 ~g~~~i~~G~~~ 86 (169)
T cd01995 75 LGAEAIIIGVNA 86 (169)
T ss_pred CCCCEEEEeecc
Confidence 78999886554
No 306
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=50.48 E-value=48 Score=29.18 Aligned_cols=65 Identities=23% Similarity=0.291 Sum_probs=41.1
Q ss_pred hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHh----CCCEEEEec
Q 023530 140 HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ----NTDFLVLAR 212 (281)
Q Consensus 140 snL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~----~~DlIVLAg 212 (281)
.-+++-++-++.. .-.+.|+||+ ..+.+..+|+.+|||+.+--.|. ...++.++|+ .++=+|+.|
T Consensus 49 pe~~~W~~e~k~~---gi~v~vvSNn---~e~RV~~~~~~l~v~fi~~A~KP--~~~~fr~Al~~m~l~~~~vvmVG 117 (175)
T COG2179 49 PELRAWLAELKEA---GIKVVVVSNN---KESRVARAAEKLGVPFIYRAKKP--FGRAFRRALKEMNLPPEEVVMVG 117 (175)
T ss_pred HHHHHHHHHHHhc---CCEEEEEeCC---CHHHHHhhhhhcCCceeecccCc--cHHHHHHHHHHcCCChhHEEEEc
Confidence 4566666555443 1345688887 56778889999999999854332 1234555554 566666655
No 307
>PRK10126 tyrosine phosphatase; Provisional
Probab=50.32 E-value=1e+02 Score=25.58 Aligned_cols=79 Identities=16% Similarity=0.237 Sum_probs=43.9
Q ss_pred CeeEEEEeeCCh---hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHH-HHHh
Q 023530 128 KYKVAVLASKQE---HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELL-ELVQ 203 (281)
Q Consensus 128 ~~rIavl~Sg~G---snL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~-~~L~ 203 (281)
++||.|..+|+- .-.++|+.... +.+.+.=+++.....+.++..+.+.++++||+..-...+ .+. +.++
T Consensus 2 ~~~iLFVC~gN~cRSpmAEa~~~~~~-~~~~v~SAG~~~~~g~~~~~~a~~~l~~~Gid~~~h~sr------~lt~~~~~ 74 (147)
T PRK10126 2 FNNILVVCVGNICRSPTAERLLQRYH-PELKVESAGLGALVGKGADPTAISVAAEHQLSLEGHCAR------QISRRLCR 74 (147)
T ss_pred CCeEEEEcCCcHhHHHHHHHHHHHhc-CCeEEEeeeccCCCCCCCCHHHHHHHHHcCCCcCCCccc------cCCHHHhc
Confidence 368888888884 33455665432 333333344422111114667889999999985321111 111 2334
Q ss_pred CCCEEEEecc
Q 023530 204 NTDFLVLARY 213 (281)
Q Consensus 204 ~~DlIVLAgY 213 (281)
+.|+|+....
T Consensus 75 ~~DlIl~Md~ 84 (147)
T PRK10126 75 NYDLILTMEK 84 (147)
T ss_pred cCCEEEECCH
Confidence 7999998643
No 308
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=50.29 E-value=30 Score=26.54 Aligned_cols=59 Identities=12% Similarity=0.110 Sum_probs=35.1
Q ss_pred EeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHh
Q 023530 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (281)
Q Consensus 134 l~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~ 203 (281)
+++|.-..+.+ ++.|+ +..+.|-+|-++.-......+|+.++||+.+..++ ++|=..+-
T Consensus 9 lv~G~~~vlka----Ik~gk--akLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~t~-----~eLG~A~G 67 (82)
T PRK13601 9 RVVGAKQTLKA----ITNCN--VLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDTM-----KELGVMCG 67 (82)
T ss_pred EEEchHHHHHH----HHcCC--eeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeCCH-----HHHHHHHC
Confidence 56666555554 44563 56666666653211136788899999999775422 24555554
No 309
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=49.63 E-value=1.4e+02 Score=26.19 Aligned_cols=56 Identities=11% Similarity=0.158 Sum_probs=29.9
Q ss_pred eEEEEeeCCh----hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCCh--hHHHHHHhCCCCEEEeC
Q 023530 130 KVAVLASKQE----HCLVDFLYGWQEGKLPVEITCVISNHDRGPNS--HVIRFLERHGIPYHYLC 188 (281)
Q Consensus 130 rIavl~Sg~G----snL~aLl~~~~~g~l~~eI~~Visn~pd~~~a--~~~~~A~~~gIP~~~i~ 188 (281)
+|.+|+-.+| +.+--|..+.+.. +..|.+|-++. -|..+ ....+|+..|+|++...
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~-~R~ga~eQL~~~a~~l~vp~~~~~ 63 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADT-YRIGAVEQLKTYAEILGVPFYVAR 63 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEEST-SSTHHHHHHHHHHHHHTEEEEESS
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCC-CCccHHHHHHHHHHHhccccchhh
Confidence 4444544343 6666665554433 34666666653 22111 24667888888888754
No 310
>PRK09977 putative Mg(2+) transport ATPase; Provisional
Probab=49.59 E-value=1.3e+02 Score=27.29 Aligned_cols=62 Identities=6% Similarity=-0.058 Sum_probs=41.6
Q ss_pred cEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 023530 42 HGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFK 108 (281)
Q Consensus 42 ~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~ 108 (281)
.+.+++.+.+.. +..+.+.+.++++.+.+++........ .+.+++.++. ..+..++-+++.+
T Consensus 144 ~~~~~i~~~~~~--~~~i~~~l~~~~i~i~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~l~~~L~~ 205 (215)
T PRK09977 144 HYHLQLTLVNGN--VVSMLDWFKQQKIKTDLVSLQENEDHE--VVAIDITLHA-TTSIEDLYRLLKG 205 (215)
T ss_pred cEEEEEEEcccc--HHHHHHHHHHcCceEEEEEEEecCCCc--EEEEEEEECC-CCCHHHHHHHHhc
Confidence 456677776553 688899999999999999876432222 3567777775 5566666554433
No 311
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=49.54 E-value=17 Score=29.45 Aligned_cols=43 Identities=16% Similarity=0.196 Sum_probs=31.1
Q ss_pred hhHHHHHHhCCCCEEEeC-CCC--C--C----------hHHHHHHHHhCCCEEEEecc
Q 023530 171 SHVIRFLERHGIPYHYLC-AKE--N--E----------REEELLELVQNTDFLVLARY 213 (281)
Q Consensus 171 a~~~~~A~~~gIP~~~i~-~k~--~--~----------~e~~l~~~L~~~DlIVLAgY 213 (281)
..+.++|++.|+|+..-. .+. . . ......++++++|+|++.|.
T Consensus 29 ~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~iG~ 86 (137)
T PF00205_consen 29 EELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADLVLAIGT 86 (137)
T ss_dssp HHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSEEEEESS
T ss_pred HHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCCCEEEEECC
Confidence 357889999999998865 332 0 0 02456677789999999994
No 312
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=49.35 E-value=37 Score=26.23 Aligned_cols=41 Identities=15% Similarity=0.356 Sum_probs=25.0
Q ss_pred HHHHHHhCCCCEEEeCCCCCChHHHHHHHHh--CCCEEEEecc
Q 023530 173 VIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARY 213 (281)
Q Consensus 173 ~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~--~~DlIVLAgY 213 (281)
..+.+++.|+++...-....+..+++.+..+ ++|+||+..-
T Consensus 61 ~~~~~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~ 103 (132)
T cd01988 61 AERIAASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWH 103 (132)
T ss_pred HHHHhhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecC
Confidence 4556677788876543111123356777666 7899998543
No 313
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=49.21 E-value=1e+02 Score=28.94 Aligned_cols=76 Identities=18% Similarity=0.283 Sum_probs=45.8
Q ss_pred eEEEEeeCChhHHHHHHHhh----hcCCCCeeEEEEEeCCCCCCCh--hHHHHHHhCCCCEEEeC-CCCCC-hHHHHHHH
Q 023530 130 KVAVLASKQEHCLVDFLYGW----QEGKLPVEITCVISNHDRGPNS--HVIRFLERHGIPYHYLC-AKENE-REEELLEL 201 (281)
Q Consensus 130 rIavl~Sg~GsnL~aLl~~~----~~g~l~~eI~~Visn~pd~~~a--~~~~~A~~~gIP~~~i~-~k~~~-~e~~l~~~ 201 (281)
.| +|+++....++.++..+ +.|+ +|...-.++ +.. +..++++++|+.+..++ ..... +.+++.+.
T Consensus 63 ~v-~~~~~~t~a~~~~~~~l~~~~~~g~---~vl~~~~~~---~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~ 135 (371)
T PF00266_consen 63 EV-VFTSNGTEALNAVASSLLNPLKPGD---EVLVTSNEH---PSNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEA 135 (371)
T ss_dssp EE-EEESSHHHHHHHHHHHHHHHGTTTC---EEEEEESSH---HHHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHH
T ss_pred cc-ccccccchhhhhhhhcccccccccc---ccccccccc---cccccccccccccchhhhccccccccchhhhhhhhhh
Confidence 45 45555555777777765 3342 444333333 222 35667789999998887 22222 23567777
Q ss_pred Hh-CCCEEEEec
Q 023530 202 VQ-NTDFLVLAR 212 (281)
Q Consensus 202 L~-~~DlIVLAg 212 (281)
|. ++++|++.-
T Consensus 136 l~~~~~lv~~~~ 147 (371)
T PF00266_consen 136 LNPDTRLVSISH 147 (371)
T ss_dssp HHTTESEEEEES
T ss_pred hccccceEEeec
Confidence 77 899987753
No 314
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=49.07 E-value=64 Score=31.44 Aligned_cols=72 Identities=15% Similarity=0.194 Sum_probs=43.6
Q ss_pred CCCeeEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHh
Q 023530 126 DPKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (281)
Q Consensus 126 ~~~~rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~ 203 (281)
+...|++|++-|.- --..+|... .+-+++|++|.+- .-..+.+.|++|++| - ++-...+| ++++
T Consensus 4 s~~ir~Gi~g~g~ia~~f~~al~~~---p~s~~~Ivava~~----s~~~A~~fAq~~~~~--~-~k~y~syE----eLak 69 (351)
T KOG2741|consen 4 SATIRWGIVGAGRIARDFVRALHTL---PESNHQIVAVADP----SLERAKEFAQRHNIP--N-PKAYGSYE----ELAK 69 (351)
T ss_pred CceeEEEEeehhHHHHHHHHHhccC---cccCcEEEEEecc----cHHHHHHHHHhcCCC--C-CccccCHH----HHhc
Confidence 45679999988873 122222222 2235789998773 234678999999996 1 11123444 5555
Q ss_pred --CCCEEEEe
Q 023530 204 --NTDFLVLA 211 (281)
Q Consensus 204 --~~DlIVLA 211 (281)
++|.|++.
T Consensus 70 d~~vDvVyi~ 79 (351)
T KOG2741|consen 70 DPEVDVVYIS 79 (351)
T ss_pred CCCcCEEEeC
Confidence 57887653
No 315
>PRK10206 putative oxidoreductase; Provisional
Probab=48.92 E-value=54 Score=31.17 Aligned_cols=67 Identities=10% Similarity=0.096 Sum_probs=36.9
Q ss_pred CeeEEEEeeCChhH---HHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHh-
Q 023530 128 KYKVAVLASKQEHC---LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ- 203 (281)
Q Consensus 128 ~~rIavl~Sg~Gsn---L~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~- 203 (281)
+.||+|++.|.... +.++... .. ..++++|.+.. +.+ .+.++++++...+ + + +.++|+
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~--~~--~~~l~av~d~~---~~~--~~~~~~~~~~~~~-~----~----~~ell~~ 62 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNR--KD--SWHVAHIFRRH---AKP--EEQAPIYSHIHFT-S----D----LDEVLND 62 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcC--CC--CEEEEEEEcCC---hhH--HHHHHhcCCCccc-C----C----HHHHhcC
Confidence 46999999997311 2323221 11 37898887754 222 3667777643222 1 1 224454
Q ss_pred -CCCEEEEec
Q 023530 204 -NTDFLVLAR 212 (281)
Q Consensus 204 -~~DlIVLAg 212 (281)
++|+|+.+-
T Consensus 63 ~~iD~V~I~t 72 (344)
T PRK10206 63 PDVKLVVVCT 72 (344)
T ss_pred CCCCEEEEeC
Confidence 678888763
No 316
>COG3007 Uncharacterized paraquat-inducible protein B [Function unknown]
Probab=48.43 E-value=1.4e+02 Score=28.81 Aligned_cols=93 Identities=17% Similarity=0.186 Sum_probs=59.0
Q ss_pred CCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCC----------ChhHHHHHHhCCCCEEEeCCCCCC
Q 023530 124 DIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGP----------NSHVIRFLERHGIPYHYLCAKENE 193 (281)
Q Consensus 124 ~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~----------~a~~~~~A~~~gIP~~~i~~k~~~ 193 (281)
..+.++||.|+++.+|-.|.+=+.+. -| -.++-.+|.--+|... ++...+.|++.|.=...+.-...+
T Consensus 37 ~~ngPKkVLviGaSsGyGLa~RIsaa-FG-~gAdTiGVffE~pgte~~~gtagwyn~~~f~~~A~~kGlyAksingDaFS 114 (398)
T COG3007 37 IKNGPKKVLVIGASSGYGLAARISAA-FG-PGADTIGVFFERPGTERKPGTAGWYNNAAFKKFAKQKGLYAKSINGDAFS 114 (398)
T ss_pred ccCCCceEEEEecCCcccHHHHHHHH-hC-CCCceeeEEeecCCccCCCcchhhhHHHHHHHHHHhcCceeeecccchhh
Confidence 35678899999999987776655432 23 2467777877664321 145678999999766555511112
Q ss_pred hH--HHHHHHHh----CCCEEE--EecccccCC
Q 023530 194 RE--EELLELVQ----NTDFLV--LARYMQPVP 218 (281)
Q Consensus 194 ~e--~~l~~~L~----~~DlIV--LAgYMrILs 218 (281)
.| +..++.++ ++|||| ||.=||--+
T Consensus 115 ~e~k~kvIe~Ik~~~g~vDlvvYSlAsp~Rk~p 147 (398)
T COG3007 115 DEMKQKVIEAIKQDFGKVDLVVYSLASPRRKHP 147 (398)
T ss_pred HHHHHHHHHHHHHhhccccEEEEeccCccccCC
Confidence 23 45667777 799998 555555443
No 317
>PRK13980 NAD synthetase; Provisional
Probab=48.28 E-value=1.3e+02 Score=27.57 Aligned_cols=58 Identities=16% Similarity=0.086 Sum_probs=36.8
Q ss_pred CeeEEEEeeCCh-h-HHHHHHHhhhcCCCCeeEEEEEeCCCCCC---ChhHHHHHHhCCCCEEEeC
Q 023530 128 KYKVAVLASKQE-H-CLVDFLYGWQEGKLPVEITCVISNHDRGP---NSHVIRFLERHGIPYHYLC 188 (281)
Q Consensus 128 ~~rIavl~Sg~G-s-nL~aLl~~~~~g~l~~eI~~Visn~pd~~---~a~~~~~A~~~gIP~~~i~ 188 (281)
..+++|..||+- | .+-.++... .|. .++.+|..++...+ -..+.+.|+++||++++++
T Consensus 30 ~~~vvv~lSGGiDSsv~a~l~~~~-~~~--~~v~av~~~~~~~~~~~~~~a~~la~~lgi~~~~i~ 92 (265)
T PRK13980 30 AKGVVLGLSGGIDSAVVAYLAVKA-LGK--ENVLALLMPSSVSPPEDLEDAELVAEDLGIEYKVIE 92 (265)
T ss_pred CCcEEEECCCCHHHHHHHHHHHHH-hCc--cceEEEEeeCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 468999999983 4 444444332 221 35766666543211 1357889999999999986
No 318
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=48.26 E-value=1.5e+02 Score=26.97 Aligned_cols=58 Identities=24% Similarity=0.302 Sum_probs=40.8
Q ss_pred CeeEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCC-----hhHHHHHHhCCCCEEEeC
Q 023530 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN-----SHVIRFLERHGIPYHYLC 188 (281)
Q Consensus 128 ~~rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~~-----a~~~~~A~~~gIP~~~i~ 188 (281)
..||+|-+||+- +.|-.++...... .++.+|-.||-=++. ..+...|+..|+|.++..
T Consensus 21 ~~~ilVavSGGkDS~~ll~~L~~l~~~---~~~~a~~Vd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 85 (298)
T COG0037 21 EYKILVAVSGGKDSLALLHLLKELGRR---IEVEAVHVDHGLRGYSDQEAELVEKLCEKLGIPLIVER 85 (298)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHhccC---ceEEEEEecCCCCCccchHHHHHHHHHHHhCCceEEEE
Confidence 568999999983 6666666654332 578888888732221 246788999999988865
No 319
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=48.15 E-value=15 Score=30.85 Aligned_cols=85 Identities=20% Similarity=0.231 Sum_probs=41.2
Q ss_pred eEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCE----EEeCCCCCChHHHHHHHHhC
Q 023530 130 KVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY----HYLCAKENEREEELLELVQN 204 (281)
Q Consensus 130 rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~----~~i~~k~~~~e~~l~~~L~~ 204 (281)
||+|+++|+ |+.+-.++.. .| .+|.+- +.+ ...+.++-+.+..+. +.++... .....+.+.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~--~g---~~V~l~-~~~----~~~~~~i~~~~~n~~~~~~~~l~~~i-~~t~dl~~a~~~ 69 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLAD--NG---HEVTLW-GRD----EEQIEEINETRQNPKYLPGIKLPENI-KATTDLEEALED 69 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHH--CT---EEEEEE-TSC----HHHHHHHHHHTSETTTSTTSBEETTE-EEESSHHHHHTT
T ss_pred CEEEECcCHHHHHHHHHHHH--cC---CEEEEE-ecc----HHHHHHHHHhCCCCCCCCCcccCccc-ccccCHHHHhCc
Confidence 799999999 5777766664 33 455533 322 123334444443222 1111100 001124467779
Q ss_pred CCEEEEecccccCChhHHhhhc
Q 023530 205 TDFLVLARYMQPVPLQKEAYLG 226 (281)
Q Consensus 205 ~DlIVLAgYMrILs~~fl~~~~ 226 (281)
+|+|++|==.+-+ ++++++..
T Consensus 70 ad~IiiavPs~~~-~~~~~~l~ 90 (157)
T PF01210_consen 70 ADIIIIAVPSQAH-REVLEQLA 90 (157)
T ss_dssp -SEEEE-S-GGGH-HHHHHHHT
T ss_pred ccEEEecccHHHH-HHHHHHHh
Confidence 9999998444444 23444433
No 320
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=48.02 E-value=70 Score=30.99 Aligned_cols=59 Identities=19% Similarity=0.205 Sum_probs=39.0
Q ss_pred CCCeeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCC-----C-------hhHHHHHHhCCCCEEEeC
Q 023530 126 DPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGP-----N-------SHVIRFLERHGIPYHYLC 188 (281)
Q Consensus 126 ~~~~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~-----~-------a~~~~~A~~~gIP~~~i~ 188 (281)
..+.||+|..||+ +|...+.|-+- +| .++.+|.--+=|.- . ..+...|+..+||+++++
T Consensus 3 ~~~~~VvvamSgGVDSsVaa~Ll~~-~g---~~v~gv~M~nWd~~de~~s~cp~e~D~~da~~Vc~~LnI~~~~Vn 74 (377)
T KOG2805|consen 3 EKPDRVVVAMSGGVDSSVAARLLAA-RG---YNVTGVFMKNWDSLDEFGSQCPAERDWKDAKRVCKQLNIPLHQVN 74 (377)
T ss_pred cccceEEEEecCCchHHHHHHHHHh-cC---CCeeEEeeeccccccccccCCCchhhHHHHHHHHHHhCCeeEEEe
Confidence 4567999999998 46665554432 34 46777765331110 1 257788999999999987
No 321
>PF14085 DUF4265: Domain of unknown function (DUF4265)
Probab=47.47 E-value=1.4e+02 Score=24.04 Aligned_cols=60 Identities=7% Similarity=-0.011 Sum_probs=42.7
Q ss_pred cEEEEEEcCCCc-chHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhh
Q 023530 42 HGIHVFHCPDEV-GIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKM 112 (281)
Q Consensus 42 ~~iltV~G~Drp-GIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~ 112 (281)
+.+|.|.-.+.. ....+|...|.+.||.++-.+. ++ +.+++|+ ..+.+.+++.|+...++
T Consensus 52 nsTiRv~~~~~~~~~~~~v~~~l~~lG~~~E~~~~------~~----lav~VP~-~~~~~~i~~~L~~~~e~ 112 (117)
T PF14085_consen 52 NSTIRVIFDDPGPDDIEAVREELEALGCTVEGFSE------RM----LAVDVPP-SVDFDAIKDYLDRGEEQ 112 (117)
T ss_pred CEEEEEEEcCCcchhHHHHHHHHHHcCCeEEccCC------CE----EEEEECC-CCCHHHHHHHHHhhhhc
Confidence 344555444333 3789999999999998876653 23 3478888 78999999999885543
No 322
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=47.16 E-value=75 Score=30.67 Aligned_cols=87 Identities=21% Similarity=0.208 Sum_probs=52.5
Q ss_pred eeEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCC----C---------ChhHHHHHHhCCCCEEEeC-CCC-
Q 023530 129 YKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRG----P---------NSHVIRFLERHGIPYHYLC-AKE- 191 (281)
Q Consensus 129 ~rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~----~---------~a~~~~~A~~~gIP~~~i~-~k~- 191 (281)
+||+|..||+- +.+..|+.. .| .+|.+|..++-+. . -..+.+.|+.+|||+++++ .+.
T Consensus 1 ~kVlValSGGvDSsv~a~lL~~--~G---~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lgIp~~vid~~~~f 75 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQ--QG---YEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLGIPLEKVNFQKEY 75 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHHH--cC---CeEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcCCCEEEEECHHHH
Confidence 48999999983 444444443 34 4788877642110 0 0235788999999999986 210
Q ss_pred ---------------C--C------hH---HHHHHHHh---CCCEEEEecccccCChh
Q 023530 192 ---------------N--E------RE---EELLELVQ---NTDFLVLARYMQPVPLQ 220 (281)
Q Consensus 192 ---------------~--~------~e---~~l~~~L~---~~DlIVLAgYMrILs~~ 220 (281)
. + .. ..+.+..+ ++|.|+..=|.++....
T Consensus 76 ~~~v~~~~~~~y~~g~tpnpC~~Cnr~iKf~~l~~~a~~~~G~~~IATGHya~~~~d~ 133 (352)
T TIGR00420 76 WNKVFEPFIQEYKEGRTPNPDILCNKFIKFGAFLEYAAELLGNDKIATGHYARIAEIE 133 (352)
T ss_pred HHHHHHHHHHHHHcCCCCCcchhhhHHHHHHHHHHHHHHHcCCCEEEECCcceEeCCC
Confidence 0 0 00 12223332 68999999999886543
No 323
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=46.96 E-value=56 Score=31.36 Aligned_cols=54 Identities=22% Similarity=0.193 Sum_probs=35.9
Q ss_pred eEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCC-----------CChhHHHHHHhCCCCEEEeC
Q 023530 130 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRG-----------PNSHVIRFLERHGIPYHYLC 188 (281)
Q Consensus 130 rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~-----------~~a~~~~~A~~~gIP~~~i~ 188 (281)
||++..||+- +.+-.++.. .| .++.+|..|+.+. .-..+.+.|+++|||+++++
T Consensus 1 kVlValSGGvDSsvla~lL~~--~g---~~v~~v~i~~~~~~~~~~~~~s~~d~~~a~~va~~lgI~~~vvd 67 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKE--QG---YEVIGVFMKNWDEDDGKGGCCSEEDLKDARRVADQLGIPHYVVN 67 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHH--cC---CcEEEEEEecccccccccCCCCHHHHHHHHHHHHHhCCcEEEEE
Confidence 6899999983 444445543 33 4677776654321 01247889999999999987
No 324
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=46.89 E-value=54 Score=26.43 Aligned_cols=74 Identities=15% Similarity=0.169 Sum_probs=41.0
Q ss_pred eeEEEEeeCCh---hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHH-HHhC
Q 023530 129 YKVAVLASKQE---HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLE-LVQN 204 (281)
Q Consensus 129 ~rIavl~Sg~G---snL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~-~L~~ 204 (281)
+||.|+..|+. .=.++++.+...+.+.+.=+++-.+. .+..+.+..+++||+..-...+. +.+ .+++
T Consensus 1 ~~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~~~~~---~~p~a~~~l~e~Gid~~~~~s~~------l~~~~~~~ 71 (126)
T TIGR02689 1 KKVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGLEVSR---VHPTAIEVMSEIGIDISGQTSKP------LENFHPED 71 (126)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcCCCCC---CCHHHHHHHHHhCCCcccCcccc------CChhHhcC
Confidence 47888888874 23455665543333222223333332 45567888899999864322111 111 2338
Q ss_pred CCEEEEe
Q 023530 205 TDFLVLA 211 (281)
Q Consensus 205 ~DlIVLA 211 (281)
.|+||.-
T Consensus 72 ~D~iitm 78 (126)
T TIGR02689 72 YDVVISL 78 (126)
T ss_pred CCEEEEe
Confidence 9999985
No 325
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=46.69 E-value=89 Score=28.55 Aligned_cols=77 Identities=13% Similarity=0.136 Sum_probs=44.2
Q ss_pred eeEEEEeeCChhHHH---HHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC-CCC---CC-------h
Q 023530 129 YKVAVLASKQEHCLV---DFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKE---NE-------R 194 (281)
Q Consensus 129 ~rIavl~Sg~GsnL~---aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~-~k~---~~-------~ 194 (281)
|||.|.+.|.|..+. +|++.+.+. ..++..+ +. +. . ....+.+++|++++.++ ... .. .
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~--g~eV~vv-~~-~~-~--~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~~~ 73 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKR--GVEVLWL-GT-KR-G--LEKRLVPKAGIEFYFIPVGGLRRKGSFRLIKTPL 73 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhC--CCEEEEE-eC-CC-c--chhcccccCCCceEEEeccCcCCCChHHHHHHHH
Confidence 378888888775554 566665542 2577766 53 21 1 11233456899998887 221 11 0
Q ss_pred H-----HHHHHHHh--CCCEEEEec
Q 023530 195 E-----EELLELVQ--NTDFLVLAR 212 (281)
Q Consensus 195 e-----~~l~~~L~--~~DlIVLAg 212 (281)
. .++.+.++ ++|+|+.-+
T Consensus 74 ~~~~~~~~l~~~i~~~~pDvVi~~~ 98 (348)
T TIGR01133 74 KLLKAVFQARRILKKFKPDAVIGFG 98 (348)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 0 23445565 799999854
No 326
>PRK09084 aspartate kinase III; Validated
Probab=46.50 E-value=1.4e+02 Score=29.81 Aligned_cols=35 Identities=11% Similarity=0.134 Sum_probs=30.3
Q ss_pred ccEEEEEEcC---CCcchHHHHHHHHHhCCCeEeEeee
Q 023530 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADV 75 (281)
Q Consensus 41 ~~~iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q 75 (281)
.-..+++.|. +.+|+.++|-+.|+++|+||.-+.|
T Consensus 305 ~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~s 342 (448)
T PRK09084 305 NQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLITT 342 (448)
T ss_pred CEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEec
Confidence 3457888776 6899999999999999999999986
No 327
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=46.42 E-value=2.7e+02 Score=28.12 Aligned_cols=66 Identities=14% Similarity=0.009 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCC
Q 023530 97 WPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRG 168 (281)
Q Consensus 97 ~~~~~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~ 168 (281)
.+.+++.+.|+.+-.-.|-++ ....+ .+.+.|--.+++-.|++.+...+. ..+.++.+|+.+-.|+
T Consensus 306 ~~~e~i~~~l~~~~~v~GRmE----~v~~~-~~~v~VDyAHnPd~le~~L~~~~~-~~~g~li~VfG~gGDr 371 (475)
T COG0769 306 VDLEDILAGLETLKPVPGRME----LVNIG-GKLVIVDYAHNPDGLEKALRAVRL-HAAGRLIVVFGCGGDR 371 (475)
T ss_pred CCHHHHHHHHHhcCCCCCcce----EecCC-CCeEEEEeccChHHHHHHHHHHHh-hcCCcEEEEECccCCC
Confidence 445566666665544444322 12223 668888888998888888888761 1123577777766665
No 328
>PRK14424 acylphosphatase; Provisional
Probab=46.24 E-value=1e+02 Score=24.06 Aligned_cols=59 Identities=12% Similarity=0.049 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEe
Q 023530 101 QMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVIS 163 (281)
Q Consensus 101 ~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Vis 163 (281)
-+|......|.++++..|.-++.+- +|-|.+.|....+++++..++.|.-.++|.-|..
T Consensus 21 GFR~~v~~~A~~~gl~G~V~N~~dG----~Vei~~qG~~~~v~~f~~~l~~gp~~a~V~~v~~ 79 (94)
T PRK14424 21 GFRHATVREAHALGLRGWVANLEDG----TVEAMIQGPAAQIDRMLAWLRHGPPAARVTEVTF 79 (94)
T ss_pred chHHHHHHHHHHcCCeEEEEECCCC----CEEEEEEECHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 4788888999999999885433321 5889999998889999999887654466666544
No 329
>PRK00973 glucose-6-phosphate isomerase; Provisional
Probab=46.22 E-value=45 Score=33.43 Aligned_cols=55 Identities=9% Similarity=0.032 Sum_probs=34.3
Q ss_pred eEEEEeeCChhHHHHHH------Hhhh-cCC-CCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC
Q 023530 130 KVAVLASKQEHCLVDFL------YGWQ-EGK-LPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (281)
Q Consensus 130 rIavl~Sg~GsnL~aLl------~~~~-~g~-l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~ 188 (281)
-..+.+|++|++++-+. +..+ .|. ....++ +||++ .+-...++|+++|++++.+|
T Consensus 134 Tl~iviSKSGtT~ET~~~f~~~~~~l~~~g~~~~~~~v-aiTd~---~~g~L~~~A~~~g~~~f~ip 196 (446)
T PRK00973 134 TLFNVISKSGNTAETLANYLIIRGILEKLGLDPKKHLV-FTTDP---EKGKLKKIAEKEGYRTLEIP 196 (446)
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHHHhcCccccceEE-EEcCC---CccchHHHHHHcCCcEEeeC
Confidence 36788999996655543 2121 121 123444 66763 22347889999999999887
No 330
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=46.17 E-value=55 Score=31.35 Aligned_cols=49 Identities=18% Similarity=0.172 Sum_probs=30.7
Q ss_pred CeeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCE
Q 023530 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY 184 (281)
Q Consensus 128 ~~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~ 184 (281)
|+||||.+-|+ |..+...+.. .. ..++++|.... ......+|+++|.+.
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~--~~--d~eLvav~d~~----~~~~~~la~~~G~~~ 50 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAA--QP--DMELVGVAKTK----PDYEARVAVEKGYPL 50 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhc--CC--CcEEEEEECCC----hHHHHHHHHhcCCCc
Confidence 57999999977 6554444432 22 47898887532 234555677777664
No 331
>COG2243 CobF Precorrin-2 methylase [Coenzyme metabolism]
Probab=46.05 E-value=2.1e+02 Score=26.32 Aligned_cols=101 Identities=19% Similarity=0.214 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCCh---hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHH
Q 023530 99 REQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE---HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIR 175 (281)
Q Consensus 99 ~~~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~G---snL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~ 175 (281)
.+.+++..++.+++.--+ -..-+.+||+.=|.. +.+..|+++++...+..+++-=||. ...
T Consensus 69 ~e~~~~~~~e~a~~va~~--------l~~G~~VAf~~lGDP~~YsTf~~l~~~l~~~~~e~e~VPGVsS--------~~a 132 (234)
T COG2243 69 REELEDAWEEAAAEVAAE--------LEAGRDVAFLTLGDPTFYSTFMYLLERLRERGFEVEVVPGVSS--------FSA 132 (234)
T ss_pred HHHHHHHHHHHHHHHHHH--------HHcCCeEEEEEccCccHHHHHHHHHHHhhccCCceEEeCCcch--------HHH
Confidence 677888888887764321 122346888888874 6777788888765455665544453 467
Q ss_pred HHHhCCCCEEEeCCC-----CCChHHHHHHHHhCCCEEEEecccc
Q 023530 176 FLERHGIPYHYLCAK-----ENEREEELLELVQNTDFLVLARYMQ 215 (281)
Q Consensus 176 ~A~~~gIP~~~i~~k-----~~~~e~~l~~~L~~~DlIVLAgYMr 215 (281)
.|..+|+|...-+.. .+..+.++.+.+++.|.+|+.-=.+
T Consensus 133 ~aa~~~~pL~~g~~~l~Vlp~t~~~~~~~~~l~~~d~~VvMK~~~ 177 (234)
T COG2243 133 CAARLGVPLVEGDDSLSVLPATRPDEELERALADFDTAVVMKVGR 177 (234)
T ss_pred HHHHhCCceeccCceeEEEeccCchhhHHhHHhhCCeEEEEecCC
Confidence 899999998875421 1233455666777899999865555
No 332
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=45.85 E-value=75 Score=30.15 Aligned_cols=56 Identities=21% Similarity=0.255 Sum_probs=36.5
Q ss_pred eeEEEEeeCC-h-hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCC---hhHHHH-HHhCCCCEEEeC
Q 023530 129 YKVAVLASKQ-E-HCLVDFLYGWQEGKLPVEITCVISNHDRGPN---SHVIRF-LERHGIPYHYLC 188 (281)
Q Consensus 129 ~rIavl~Sg~-G-snL~aLl~~~~~g~l~~eI~~Visn~pd~~~---a~~~~~-A~~~gIP~~~i~ 188 (281)
.|+++..||+ + +.+-.++... -| .++.+|..|+.-++. ..+.+. |+++|||+++++
T Consensus 17 ~kVvValSGGVDSsvla~ll~~~-~G---~~v~av~vd~G~~~~~E~e~~~~~~~~~lgi~~~vvd 78 (311)
T TIGR00884 17 AKVIIALSGGVDSSVAAVLAHRA-IG---DRLTCVFVDHGLLRKGEAEQVVKTFGDRLGLNLVYVD 78 (311)
T ss_pred CcEEEEecCChHHHHHHHHHHHH-hC---CCEEEEEEeCCCCChHHHHHHHHHHHHHcCCcEEEEe
Confidence 5899999998 3 4444454331 24 378888888754322 134444 458999999988
No 333
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=45.07 E-value=37 Score=26.68 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=29.1
Q ss_pred EeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC
Q 023530 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (281)
Q Consensus 134 l~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~ 188 (281)
+++|...++.+ ++.|+ +..+.+-+|-|+.-......+|++++||++.+.
T Consensus 17 l~~G~~~v~ka----i~~gk--aklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~ 65 (99)
T PRK01018 17 VILGSKRTIKA----IKLGK--AKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYE 65 (99)
T ss_pred EEEcHHHHHHH----HHcCC--ceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 45555455444 44564 556655555422112367889999999987753
No 334
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=44.72 E-value=52 Score=31.28 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=18.1
Q ss_pred CCCCeeEEEEeeCC-hhHHHHHHHh
Q 023530 125 IDPKYKVAVLASKQ-EHCLVDFLYG 148 (281)
Q Consensus 125 ~~~~~rIavl~Sg~-GsnL~aLl~~ 148 (281)
..+++||+|+++|. |+.+-..+..
T Consensus 4 ~~~~mkI~IiGaGa~G~alA~~La~ 28 (341)
T PRK12439 4 AKREPKVVVLGGGSWGTTVASICAR 28 (341)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHH
Confidence 35578999999999 6767666653
No 335
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=44.29 E-value=84 Score=30.24 Aligned_cols=86 Identities=17% Similarity=0.228 Sum_probs=44.0
Q ss_pred eEEEEeeCC-hhHHHHHHHhhhcCC-----CCeeEEEEEeCCCCCCChhHHH-HHHhCCCCEEEeC-CCCC---ChHHHH
Q 023530 130 KVAVLASKQ-EHCLVDFLYGWQEGK-----LPVEITCVISNHDRGPNSHVIR-FLERHGIPYHYLC-AKEN---EREEEL 198 (281)
Q Consensus 130 rIavl~Sg~-GsnL~aLl~~~~~g~-----l~~eI~~Visn~pd~~~a~~~~-~A~~~gIP~~~i~-~k~~---~~e~~l 198 (281)
||+|+++|+ |+.|-.++.. .+. +..+|.+-.-+ ++..+....+ +-+.+. ...+++ -+.. +....+
T Consensus 1 kI~VIGaG~wGtALA~~la~--ng~~~~~~~~~~V~lw~~~-~~~~~~~~~~~in~~~~-n~~ylpgi~Lp~~i~at~dl 76 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAE--NARALPELFEESVRMWVFE-EEIEGRNLTEIINTTHE-NVKYLPGIKLPANLVAVPDL 76 (342)
T ss_pred CEEEECcCHHHHHHHHHHHH--cCCcccccCCceEEEEEec-cccCCHHHHHHHHhcCC-CccccCCCcCCCCeEEECCH
Confidence 699999999 6888777753 231 22466654432 1111222222 223322 233332 1111 111235
Q ss_pred HHHHhCCCEEEEecccccCChhHHhh
Q 023530 199 LELVQNTDFLVLARYMQPVPLQKEAY 224 (281)
Q Consensus 199 ~~~L~~~DlIVLAgYMrILs~~fl~~ 224 (281)
.++++++|+|++| +|..+++.
T Consensus 77 ~eal~~ADiIIlA-----VPs~~i~~ 97 (342)
T TIGR03376 77 VEAAKGADILVFV-----IPHQFLEG 97 (342)
T ss_pred HHHHhcCCEEEEE-----CChHHHHH
Confidence 5677789999998 66665544
No 336
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=43.92 E-value=43 Score=28.26 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=21.1
Q ss_pred EEEEEeCCCCCCChhHHHHHHhCCCCEEEeC
Q 023530 158 ITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (281)
Q Consensus 158 I~~Visn~pd~~~a~~~~~A~~~gIP~~~i~ 188 (281)
-+.|+||- -...+++++.|||+.++.
T Consensus 99 ~~iVaTnD-----~eLk~rlr~~GIPvi~lr 124 (136)
T COG1412 99 RYIVATND-----KELKRRLRENGIPVITLR 124 (136)
T ss_pred CEEEEeCC-----HHHHHHHHHcCCCEEEEe
Confidence 56688873 467899999999999986
No 337
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=43.91 E-value=3.8e+02 Score=27.51 Aligned_cols=156 Identities=13% Similarity=0.146 Sum_probs=83.2
Q ss_pred HHHHHHHHHhCCCeEeEeeeec--cCCCC--eEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccceeeeecCCCCCeeE
Q 023530 56 VAKLSECIASRGGNILAADVFV--PEKKN--VFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKV 131 (281)
Q Consensus 56 Va~VS~~La~~giNI~dl~q~~--~~~~g--~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~~~~~~~~~~~~~rI 131 (281)
-.++.+.|.+++++.++++.-- ++.+. .|..+.++ ..-..+.++.+.+...+.... + ....-+..|+
T Consensus 97 n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~i------AGy~Avi~Aa~~lgr~~~g~~-t--aag~vp~akV 167 (511)
T TIGR00561 97 NPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANI------AGYRAIIEAAHEFGRFFTGQI-T--AAGKVPPAKV 167 (511)
T ss_pred CHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHH------HHHHHHHHHHHHhhhhcCCce-e--cCCCCCCCEE
Confidence 4889999999999999998632 11111 11100000 011233334444443333221 0 0112235799
Q ss_pred EEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCC-CCC----------ChH--HH
Q 023530 132 AVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA-KEN----------ERE--EE 197 (281)
Q Consensus 132 avl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~-k~~----------~~e--~~ 197 (281)
+|++.|. |...-.++.. .| +.|. |+..++ ..++.|+++|..+..++. +.. ..| ++
T Consensus 168 lViGaG~iGl~Aa~~ak~--lG---A~V~-v~d~~~-----~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~ 236 (511)
T TIGR00561 168 LVIGAGVAGLAAIGAANS--LG---AIVR-AFDTRP-----EVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAA 236 (511)
T ss_pred EEECCCHHHHHHHHHHHH--CC---CEEE-EEeCCH-----HHHHHHHHcCCeEEeccccccccccccceeecCHHHHHH
Confidence 9999876 3333223332 34 4533 333332 358899999987766662 110 011 11
Q ss_pred ----HHHHHhCCCEEEEec------ccccCChhHHhhhcC--Ccee
Q 023530 198 ----LLELVQNTDFLVLAR------YMQPVPLQKEAYLGY--KLLE 231 (281)
Q Consensus 198 ----l~~~L~~~DlIVLAg------YMrILs~~fl~~~~~--riIN 231 (281)
+.+.++++|+|+.+- .-++++++.++..+. -|++
T Consensus 237 ~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 237 EMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 223344799999876 778899999988873 3555
No 338
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=43.88 E-value=1.1e+02 Score=27.93 Aligned_cols=56 Identities=18% Similarity=0.234 Sum_probs=36.6
Q ss_pred CeeEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCC---hhHHHHHHhCCCCEEEeC
Q 023530 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN---SHVIRFLERHGIPYHYLC 188 (281)
Q Consensus 128 ~~rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~~---a~~~~~A~~~gIP~~~i~ 188 (281)
++|.+|+.||+- +.+- ..+.+++ .+|.++--|---+.. -.+.+.|+..|||.++++
T Consensus 2 ~~kavvl~SGG~DStt~l--~~a~~~~---~ev~alsfdYGQrh~~Ele~A~~iak~lgv~~~iid 62 (222)
T COG0603 2 MKKAVVLLSGGLDSTTCL--AWAKKEG---YEVHALTFDYGQRHRKELEAAKELAKKLGVPHHIID 62 (222)
T ss_pred CceEEEEccCChhHHHHH--HHHHhcC---CEEEEEEeeCCCCcHHHHHHHHHHHHHcCCCeEEec
Confidence 578889999873 3322 2333345 478777776532221 246788999999999987
No 339
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=43.88 E-value=80 Score=30.39 Aligned_cols=45 Identities=20% Similarity=0.321 Sum_probs=24.8
Q ss_pred CeeEEEEeeCC-hhHH-HHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCC
Q 023530 128 KYKVAVLASKQ-EHCL-VDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP 183 (281)
Q Consensus 128 ~~rIavl~Sg~-GsnL-~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP 183 (281)
.++|+|++.|+ |+.+ .+|.+ .| .+|. +.+++ +....+.|++.|+.
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~---sG---~~Vv--v~~r~---~~~s~~~A~~~G~~ 63 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRD---SG---VDVV--VGLRE---GSKSWKKAEADGFE 63 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHH---CC---CEEE--EEECC---chhhHHHHHHCCCe
Confidence 35899999998 5444 33333 34 3443 33432 22335567777764
No 340
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=43.34 E-value=78 Score=29.16 Aligned_cols=77 Identities=13% Similarity=0.132 Sum_probs=48.3
Q ss_pred hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCC-C-hH-HHHHHHHhCCCEEEEeccccc
Q 023530 140 HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKEN-E-RE-EELLELVQNTDFLVLARYMQP 216 (281)
Q Consensus 140 snL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~-~-~e-~~l~~~L~~~DlIVLAgYMrI 216 (281)
+++++++.. ++ .+++.|.| |+.-.......|-++|.++.+ +++.. . .| ++|.++-++..+.+..||++.
T Consensus 57 ~~~~~ll~~---~~--iD~V~Iat--p~~~H~e~~~~AL~aGkhVl~-EKPla~t~~ea~~l~~~a~~~~~~l~v~~~~R 128 (342)
T COG0673 57 TDLEELLAD---PD--IDAVYIAT--PNALHAELALAALEAGKHVLC-EKPLALTLEEAEELVELARKAGVKLMVGFNRR 128 (342)
T ss_pred CCHHHHhcC---CC--CCEEEEcC--CChhhHHHHHHHHhcCCEEEE-cCCCCCCHHHHHHHHHHHHHcCCceeeehhhh
Confidence 457777773 33 45554444 322356677788899987776 32221 1 22 345566556699999999999
Q ss_pred CChhHHhh
Q 023530 217 VPLQKEAY 224 (281)
Q Consensus 217 Ls~~fl~~ 224 (281)
..|.+...
T Consensus 129 f~p~~~~~ 136 (342)
T COG0673 129 FDPAVQAL 136 (342)
T ss_pred cCHHHHHH
Confidence 98877644
No 341
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.16 E-value=1.2e+02 Score=22.99 Aligned_cols=60 Identities=12% Similarity=0.023 Sum_probs=41.2
Q ss_pred CCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccc
Q 023530 50 PDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (281)
Q Consensus 50 ~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~ 117 (281)
.-..|..+++-+.|.++|++++++-+..+ .|.+.++-. +++.+.+++-++++.++++.+.
T Consensus 12 n~evGF~rk~L~I~E~~~is~Eh~PSGID------~~Siii~~~--~~~~~~~~~i~~~i~~~~~pD~ 71 (76)
T cd04911 12 NREVGFGRKLLSILEDNGISYEHMPSGID------DISIIIRDN--QLTDEKEQKILAEIKEELHPDE 71 (76)
T ss_pred cchhcHHHHHHHHHHHcCCCEeeecCCCc------cEEEEEEcc--ccchhhHHHHHHHHHHhcCCCE
Confidence 34579999999999999999999987554 233444422 3333455666777777776653
No 342
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=43.14 E-value=1.3e+02 Score=28.00 Aligned_cols=50 Identities=14% Similarity=0.214 Sum_probs=28.1
Q ss_pred EEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHH---hCCCCEEEeC
Q 023530 132 AVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLE---RHGIPYHYLC 188 (281)
Q Consensus 132 avl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~---~~gIP~~~i~ 188 (281)
+|+.-|.++.++.++...+.+ ..| .|.-.+ |...+...|+ +.|||+.+++
T Consensus 89 vILT~s~S~~v~~~l~~~~~~---~~V-~v~ESr---P~~eG~~~a~~L~~~GI~vtli~ 141 (253)
T PRK06372 89 VIGTISSSQVLKAFISSSEKI---KSV-YILESR---PMLEGIDMAKLLVKSGIDVVLLT 141 (253)
T ss_pred EEEEeCCcHHHHHHHHhcCCC---CEE-EEecCC---CchHHHHHHHHHHHCCCCEEEEe
Confidence 445555678888888653221 233 233333 4444455554 4699999886
No 343
>PRK14439 acylphosphatase; Provisional
Probab=43.04 E-value=1.2e+02 Score=26.51 Aligned_cols=64 Identities=14% Similarity=0.053 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhc-CCCCeeEEEEEeC
Q 023530 97 WPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQE-GKLPVEITCVISN 164 (281)
Q Consensus 97 ~~~~~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~-g~l~~eI~~Visn 164 (281)
+.---+|......|.++|+..|..+..+- .|-+.+.|....++++++.++. |--.+.|.-|-..
T Consensus 85 VQGVGFR~fv~~~A~qlGLtGwVrNl~DG----sVEI~aQG~ee~Ie~Fi~~L~~~gPp~A~Ve~I~v~ 149 (163)
T PRK14439 85 VQGVGFRYTTQYEAKKLGLTGYAKNLDDG----SVEVVACGEEGQVEKLMQWLKSGGPRSARVERVLSE 149 (163)
T ss_pred eCCcCchHHHHHHHHHhCCEEEEEECCCC----CEEEEEEcCHHHHHHHHHHHhhCCCCCeEEEEEEEE
Confidence 33344788889999999999986543332 5889999999999999999987 3323677776665
No 344
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=42.99 E-value=87 Score=28.14 Aligned_cols=15 Identities=7% Similarity=0.220 Sum_probs=11.2
Q ss_pred CeeEEEEeeCC-hhHH
Q 023530 128 KYKVAVLASKQ-EHCL 142 (281)
Q Consensus 128 ~~rIavl~Sg~-GsnL 142 (281)
|+||+|++.|. |+.+
T Consensus 2 mm~I~iIG~G~mG~~l 17 (267)
T PRK11880 2 MKKIGFIGGGNMASAI 17 (267)
T ss_pred CCEEEEEechHHHHHH
Confidence 56899999987 4433
No 345
>PRK11890 phosphate acetyltransferase; Provisional
Probab=42.79 E-value=1.4e+02 Score=28.52 Aligned_cols=87 Identities=16% Similarity=0.175 Sum_probs=55.0
Q ss_pred CCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCC---EEEeCCCCC-ChHHHHHHH
Q 023530 126 DPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP---YHYLCAKEN-EREEELLEL 201 (281)
Q Consensus 126 ~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP---~~~i~~k~~-~~e~~l~~~ 201 (281)
..++|++|-.-...+.|++.....+.|- ++.++ +.|+ ....+.|++.|+. +.+++.... +.-++-...
T Consensus 20 ~~~~~vava~a~D~~vl~Aa~~a~~~gl--~~piL-vG~~-----~~I~~~a~~~g~dl~~~eII~~~~~~~~a~~av~m 91 (312)
T PRK11890 20 LPPLPTAVAHPCDESSLRGAVEAAQLGL--ITPIL-VGPR-----ARIEAVAAECGLDLSGYEIVDAPHSHAAAAKAVEL 91 (312)
T ss_pred CCCceEEEECCCCHHHHHHHHHHHHcCC--EEEEE-ECCH-----HHHHHHHHHcCCCcCCCEEECCCChHHHHHHHHHH
Confidence 4467999999888899999999888874 56554 4664 2578899999876 444542211 111233345
Q ss_pred Hh--CCCEEEEecccccCChhHHh
Q 023530 202 VQ--NTDFLVLARYMQPVPLQKEA 223 (281)
Q Consensus 202 L~--~~DlIVLAgYMrILs~~fl~ 223 (281)
++ ++|.+ +.|... +.++++
T Consensus 92 V~~G~AD~l-mkG~i~--Tt~~lr 112 (312)
T PRK11890 92 VREGEAEAL-MKGSLH--TDELMS 112 (312)
T ss_pred HHcCCCCEE-ecCCcc--cHHHHH
Confidence 55 79954 557664 334443
No 346
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=42.63 E-value=90 Score=25.14 Aligned_cols=57 Identities=19% Similarity=0.167 Sum_probs=35.7
Q ss_pred eEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCC---hhHHHHHHhCCCCEEEeC
Q 023530 130 KVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN---SHVIRFLERHGIPYHYLC 188 (281)
Q Consensus 130 rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~~---a~~~~~A~~~gIP~~~i~ 188 (281)
+|+|..||+- +.+-.|+...... . .++.+|..|..-..+ ..+.+.++++|+|+..+.
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~-~-~~~~~v~~dtg~~~~~~~~~~~~~~~~~g~~~~~~~ 62 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPE-L-KPVPVIFLDTGYEFPETYEFVDRVAERYGLPLVVVR 62 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhccc-c-cCceEEEeCCCCCCHHHHHHHHHHHHHhCCCeEEEC
Confidence 5788999873 5555555432211 0 257777777532111 257788999999998886
No 347
>PRK07742 phosphate butyryltransferase; Validated
Probab=42.43 E-value=1.8e+02 Score=27.36 Aligned_cols=77 Identities=19% Similarity=0.296 Sum_probs=49.5
Q ss_pred CCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCC----CEEEeCCCCCChHH---HHH
Q 023530 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGI----PYHYLCAKENEREE---ELL 199 (281)
Q Consensus 127 ~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gI----P~~~i~~k~~~~e~---~l~ 199 (281)
.++||+|-.......+++...+.++|. +++.+ +.+. ....+.++++|+ .+.+++... .++ .-.
T Consensus 14 ~~~ri~~~~~~d~~vl~Aa~~a~~e~~--~~~iL-vG~~-----~~I~~~~~~~~l~~~~~~~Ii~~~~--~~~s~~~a~ 83 (299)
T PRK07742 14 PKKTVAVAVAEDEEVIEAVAKAIELQL--ARFRL-YGNQ-----EKIMGMLQEHGLQTSEHIEIIHAQS--SAEAAELAV 83 (299)
T ss_pred CCCeEEEeCCCCHHHHHHHHHHHHcCC--ceEEE-ECCH-----HHHHHHHHHCCCCCCCCcEEECCCC--HHHHHHHHH
Confidence 456888877555688999988887773 66665 4653 245677888877 234444221 122 234
Q ss_pred HHHh--CCCEEEEecc
Q 023530 200 ELVQ--NTDFLVLARY 213 (281)
Q Consensus 200 ~~L~--~~DlIVLAgY 213 (281)
++++ ++|.+|-+|-
T Consensus 84 ~lV~~G~aD~lvsG~~ 99 (299)
T PRK07742 84 KAVRNGEADVLMKGNV 99 (299)
T ss_pred HHHHCCCCCEEEECCc
Confidence 5666 7999997665
No 348
>PRK13530 arsenate reductase; Provisional
Probab=42.33 E-value=52 Score=27.00 Aligned_cols=76 Identities=16% Similarity=0.217 Sum_probs=41.0
Q ss_pred CeeEEEEeeCCh---hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHhC
Q 023530 128 KYKVAVLASKQE---HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQN 204 (281)
Q Consensus 128 ~~rIavl~Sg~G---snL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~~ 204 (281)
++||.|+.+|+. .=.++++.....+.+.+.=+++-.. ..+..+.+..+++||+......+.-. + +.+++
T Consensus 3 ~~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~~~~---~~~~~a~~~l~e~Gi~~~~~~s~~l~-~----~~~~~ 74 (133)
T PRK13530 3 KKTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGIEAH---GVNPNAIKAMKEVGIDISNQTSDIID-N----DILNN 74 (133)
T ss_pred CCEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCCCCC---CCCHHHHHHHHHcCCCcCCCccccCC-h----hHhcc
Confidence 568998888884 2345555543323222222222111 14567888999999986321111101 1 12337
Q ss_pred CCEEEEe
Q 023530 205 TDFLVLA 211 (281)
Q Consensus 205 ~DlIVLA 211 (281)
.|+||.-
T Consensus 75 ~D~ii~m 81 (133)
T PRK13530 75 ADLVVTL 81 (133)
T ss_pred CCEEEEe
Confidence 8999875
No 349
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=42.22 E-value=1.8e+02 Score=26.27 Aligned_cols=58 Identities=12% Similarity=0.024 Sum_probs=36.5
Q ss_pred CeeEEEEeeCC-hhHH-HHHHHhhhcCCCCeeEEEEEeCCCCCC---ChhHHHHHHhCCCCEEEeC
Q 023530 128 KYKVAVLASKQ-EHCL-VDFLYGWQEGKLPVEITCVISNHDRGP---NSHVIRFLERHGIPYHYLC 188 (281)
Q Consensus 128 ~~rIavl~Sg~-GsnL-~aLl~~~~~g~l~~eI~~Visn~pd~~---~a~~~~~A~~~gIP~~~i~ 188 (281)
..+++|..||+ +|.+ -+|+... .+ +.++.++..+..... -..+...|++.|||++.++
T Consensus 23 ~~~vvv~lSGGiDSs~~a~la~~~-~~--~~~v~~~~~~~~~~~~~~~~~a~~~a~~lgi~~~~i~ 85 (248)
T cd00553 23 FKGVVLGLSGGIDSALVAALAVRA-LG--RENVLALFMPSRYSSEETREDAKELAEALGIEHVNID 85 (248)
T ss_pred CCCEEEeCCCcHHHHHHHHHHHHH-hC--cccEEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEec
Confidence 45899999998 3444 3444332 22 135666666542111 1257889999999999887
No 350
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=42.19 E-value=1.3e+02 Score=22.83 Aligned_cols=46 Identities=13% Similarity=0.234 Sum_probs=34.6
Q ss_pred HHHHHHHHhCCCe-EeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhh
Q 023530 57 AKLSECIASRGGN-ILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (281)
Q Consensus 57 a~VS~~La~~giN-I~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l 113 (281)
.+|.+.|...|.+ |.++++ |.++ .++++.+ +.++-++..+++|+++
T Consensus 19 ~ai~~al~~lG~~~v~~Vr~------GK~~-~l~~~~~----~~e~a~~~v~~i~~~L 65 (80)
T PF02700_consen 19 EAIKRALHRLGYDGVKDVRV------GKYI-ELELEAD----DEEEAEEQVEEICEKL 65 (80)
T ss_dssp HHHHHHHHHTT-TTEEEEEE------EEEE-EEEEE-S----SHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCcccCcEEE------EEEE-EEEEeCC----CHHHHHHHHHHHHHHh
Confidence 5788999999988 888887 6555 4555533 5788899999999987
No 351
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=42.08 E-value=1.1e+02 Score=30.05 Aligned_cols=88 Identities=10% Similarity=-0.045 Sum_probs=49.4
Q ss_pred CChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCC-CChH--HHHHHHHhCCCEEEEecc
Q 023530 137 KQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKE-NERE--EELLELVQNTDFLVLARY 213 (281)
Q Consensus 137 g~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~-~~~e--~~l~~~L~~~DlIVLAgY 213 (281)
+.|.....++.+..... +.|.+=+.|.-| . -.+.|+..|+++..-+.-. -..| ++..+.++++|.||++++
T Consensus 274 ~~~~~~~~~~~~L~~~g--~~v~~g~l~~~d---~-d~~~a~~l~~~~~~~~pf~~i~~~~~~~a~~~~~~~~~vi~~~~ 347 (402)
T PRK09536 274 GGGQPAARAVSRLVAAG--ASVSVGPVPEGD---T-AAETAARVGCEAVTVPPFKPIEDSTRAEATDLIIAADAVVAAGV 347 (402)
T ss_pred CCCCcHHHHHHHHHHCC--CeEEEecCcCcc---h-hHHHHHHcCCCEEeeCCCCCCCHHHHHHHHHHHHhCCEEEECCC
Confidence 34434444554443332 566555555423 2 2578999999998865111 1112 344455559999999887
Q ss_pred cccCChhHHhhhcCCce
Q 023530 214 MQPVPLQKEAYLGYKLL 230 (281)
Q Consensus 214 MrILs~~fl~~~~~riI 230 (281)
=-=-.+.....|.++++
T Consensus 348 ~~g~~~~~~~~~~~~~~ 364 (402)
T PRK09536 348 AAAARSGVIGLLAGNAP 364 (402)
T ss_pred ccCCCCCchheecccce
Confidence 54444555555555443
No 352
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=41.73 E-value=3.5e+02 Score=26.56 Aligned_cols=38 Identities=13% Similarity=0.031 Sum_probs=31.5
Q ss_pred cccEEEEEEcCCC--cchHHHHHHHHHhCCCeEeEeeeec
Q 023530 40 LTHGIHVFHCPDE--VGIVAKLSECIASRGGNILAADVFV 77 (281)
Q Consensus 40 ~~~~iltV~G~Dr--pGIVa~VS~~La~~giNI~dl~q~~ 77 (281)
.....+++.|.+- +|+.+++.+.|+++|+||.-+.|.+
T Consensus 300 ~~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~ 339 (441)
T TIGR00657 300 RNQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSS 339 (441)
T ss_pred CCEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecC
Confidence 3456788888654 6999999999999999999998754
No 353
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=41.18 E-value=1.1e+02 Score=28.00 Aligned_cols=66 Identities=17% Similarity=0.290 Sum_probs=33.3
Q ss_pred eeEEEEeeCC-hhHH-HHHHHhhhcCCCC-eeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHhCC
Q 023530 129 YKVAVLASKQ-EHCL-VDFLYGWQEGKLP-VEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (281)
Q Consensus 129 ~rIavl~Sg~-GsnL-~aLl~~~~~g~l~-~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~~~ 205 (281)
+||+|++.|. |+.+ ..|++ .|..+ .+| +++|+. +......+++++|+... . + ..+.++++
T Consensus 4 mkI~~IG~G~mG~aia~~l~~---~g~~~~~~v--~v~~r~--~~~~~~~l~~~~g~~~~--~----~----~~e~~~~a 66 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLH---ANVVKGEQI--TVSNRS--NETRLQELHQKYGVKGT--H----N----KKELLTDA 66 (279)
T ss_pred CEEEEECccHHHHHHHHHHHH---CCCCCcceE--EEECCC--CHHHHHHHHHhcCceEe--C----C----HHHHHhcC
Confidence 4899999887 4333 33433 23222 233 456651 12234556666675321 1 1 11233466
Q ss_pred CEEEEe
Q 023530 206 DFLVLA 211 (281)
Q Consensus 206 DlIVLA 211 (281)
|+|++|
T Consensus 67 DvVila 72 (279)
T PRK07679 67 NILFLA 72 (279)
T ss_pred CEEEEE
Confidence 777776
No 354
>PRK14434 acylphosphatase; Provisional
Probab=41.13 E-value=1.3e+02 Score=23.40 Aligned_cols=59 Identities=19% Similarity=0.191 Sum_probs=44.5
Q ss_pred HHHHHHHHhhhhc-ccceeeeecCCCCCeeEEEEeeCCh-hHHHHHHHhhhcCCC-CeeEEEEEeC
Q 023530 102 MDEDFFKLSKMFN-AMRSVVRVPDIDPKYKVAVLASKQE-HCLVDFLYGWQEGKL-PVEITCVISN 164 (281)
Q Consensus 102 L~~~L~~la~~l~-l~~~~~~~~~~~~~~rIavl~Sg~G-snL~aLl~~~~~g~l-~~eI~~Visn 164 (281)
+|.-...+|.+++ +..|..+..+- +|-+.+.|.. ..++.+++.++.|.- .+.|.-|-..
T Consensus 17 FR~fv~~~A~~lg~l~G~V~N~~dG----sVei~~qG~~~~~l~~f~~~l~~g~pp~a~V~~v~~~ 78 (92)
T PRK14434 17 FRYSVYSLALEIGDIYGRVWNNDDG----TVEILAQSDDSAKLAKFIQEIRKGPSKWAKVTYVDVT 78 (92)
T ss_pred EhHHHHHHHHHcCCcEEEEEECCCC----CEEEEEEcCCHHHHHHHHHHHhcCCCCCEEEEEEEEE
Confidence 5777788999999 99986543322 5888899986 589999999988764 3777766554
No 355
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=40.84 E-value=1.8e+02 Score=27.46 Aligned_cols=52 Identities=19% Similarity=0.314 Sum_probs=27.8
Q ss_pred EEEeeCCh-hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHH---HHhCCCCEEEeC
Q 023530 132 AVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRF---LERHGIPYHYLC 188 (281)
Q Consensus 132 avl~Sg~G-snL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~---A~~~gIP~~~i~ 188 (281)
.||.-++. +.+.-|..+.+.|. +.+|. |.-.+ |...+... ..+.|||+..++
T Consensus 118 ~ILT~~~S~tv~~~l~~a~~~~~-~f~V~-v~Esr---P~~~G~~~a~~L~~~gI~vtlI~ 173 (301)
T TIGR00511 118 VVMTHCNSEAALSVIKTAFEQGK-DIEVI-ATETR---PRKQGHITAKELRDYGIPVTLIV 173 (301)
T ss_pred EEEEECCcHHHHHHHHHHHHcCC-cEEEE-EecCC---CcchHHHHHHHHHHCCCCEEEEe
Confidence 35555554 54554555555554 34443 22233 44333433 356799999986
No 356
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=40.84 E-value=1.1e+02 Score=27.95 Aligned_cols=55 Identities=15% Similarity=0.066 Sum_probs=33.8
Q ss_pred eeEEEEeeCC-hhHHH-HHHHhhhcCCCCeeEEEEEeCCCCCCC---hhHHHHHHhCCCC-EEEeC
Q 023530 129 YKVAVLASKQ-EHCLV-DFLYGWQEGKLPVEITCVISNHDRGPN---SHVIRFLERHGIP-YHYLC 188 (281)
Q Consensus 129 ~rIavl~Sg~-GsnL~-aLl~~~~~g~l~~eI~~Visn~pd~~~---a~~~~~A~~~gIP-~~~i~ 188 (281)
.|++|+.||+ +|.+- .++. +.+ .++.+|..|-+.+.. ..+...|+++||| +.+++
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a~--~~~---~~v~alt~dygq~~~~El~~a~~ia~~~gi~~h~vid 62 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQAL--QQY---DEVHCVTFDYGQRHRAEIDVARELALKLGARAHKVLD 62 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHHH--hcC---CeEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 4799999998 34332 2322 233 267677666532211 2467889999997 77765
No 357
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y ....
Probab=40.63 E-value=1.6e+02 Score=22.18 Aligned_cols=63 Identities=14% Similarity=0.083 Sum_probs=42.8
Q ss_pred EEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhc
Q 023530 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (281)
Q Consensus 43 ~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~ 114 (281)
+.++|.+|+ ..+..|.+.|.++++.|++.... ..+.+. +++.+|- .....++.+|..+.+..+
T Consensus 7 ~~~~I~~p~--~~~g~v~~~l~~r~g~i~~~~~~---~~~~~~--i~~~iP~--~~~~gf~~~Lr~~T~G~a 69 (89)
T PF00679_consen 7 MSVEISVPE--EYLGKVISDLSKRRGEILSMDPI---GGDRVV--IEAEIPV--RELFGFRSELRSLTSGRA 69 (89)
T ss_dssp EEEEEEEEG--GGHHHHHHHHHHTT-EEEEEEEE---STTEEE--EEEEEEG--GGHTTHHHHHHHHTTTS-
T ss_pred EEEEEEECH--HHHHHHHHHhcccccEEEechhh---hhhhee--EEEEECh--hhhhhHHHHhhccCCCEE
Confidence 356677773 45788888999999999999985 245555 4455553 235578888988876554
No 358
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=40.62 E-value=1.1e+02 Score=28.48 Aligned_cols=85 Identities=12% Similarity=0.081 Sum_probs=46.8
Q ss_pred CeeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHhCCC
Q 023530 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (281)
Q Consensus 128 ~~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~~~D 206 (281)
.++++|++.|+ |..+...+.. .| ++|. +.|+. . .-.+.+.+.|..... . .++.+.+++.|
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~--~G---~~V~--v~~R~---~-~~~~~~~~~g~~~~~-------~-~~l~~~l~~aD 211 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSA--LG---ARVF--VGARS---S-ADLARITEMGLIPFP-------L-NKLEEKVAEID 211 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHH--CC---CEEE--EEeCC---H-HHHHHHHHCCCeeec-------H-HHHHHHhccCC
Confidence 35899999987 4333333332 23 4543 44541 1 123445555643221 1 23556667999
Q ss_pred EEEEecccccCChhHHhhhcC--Ccee
Q 023530 207 FLVLARYMQPVPLQKEAYLGY--KLLE 231 (281)
Q Consensus 207 lIVLAgYMrILs~~fl~~~~~--riIN 231 (281)
+|+.+=-..+++.+.++.++. =+||
T Consensus 212 iVint~P~~ii~~~~l~~~k~~aliID 238 (287)
T TIGR02853 212 IVINTIPALVLTADVLSKLPKHAVIID 238 (287)
T ss_pred EEEECCChHHhCHHHHhcCCCCeEEEE
Confidence 999985555667776666653 2555
No 359
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=40.57 E-value=49 Score=26.58 Aligned_cols=59 Identities=12% Similarity=0.099 Sum_probs=33.9
Q ss_pred EeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC-CCCCChHHHHHHHHh
Q 023530 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENEREEELLELVQ 203 (281)
Q Consensus 134 l~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~-~k~~~~e~~l~~~L~ 203 (281)
+++|.-.++.+| +.|. +..+.|-+|-++.-......+|+.++||++.+. ++ +++-.++-
T Consensus 26 lv~G~~~vlkal----k~gk--aklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~t~-----~eLG~A~G 85 (108)
T PTZ00106 26 YTLGTKSTLKAL----RNGK--AKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAGNN-----NDLGTACG 85 (108)
T ss_pred eeecHHHHHHHH----HcCC--eeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCCCH-----HHHHHHhC
Confidence 556665555554 3463 455555555432111356788999999998643 21 34656665
No 360
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=40.37 E-value=1.4e+02 Score=29.08 Aligned_cols=69 Identities=13% Similarity=0.111 Sum_probs=39.2
Q ss_pred CChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHH----HHhCCCCEEEeCCCCCChHHHHHHHHh--CCCEEEE
Q 023530 137 KQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRF----LERHGIPYHYLCAKENEREEELLELVQ--NTDFLVL 210 (281)
Q Consensus 137 g~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~----A~~~gIP~~~i~~k~~~~e~~l~~~L~--~~DlIVL 210 (281)
|.|+.|.-|..+.+.|. .+. |+.. +.||...+..+ ..+.|||+..+.. ....-+++ ++|.|++
T Consensus 176 ~~gTal~vi~~A~~~gk---~~~-V~v~-EtRP~~qG~rlta~eL~~~GI~vtlI~D------sav~~~M~~~~Vd~Viv 244 (356)
T PRK08334 176 HLGTVGAVLRVMHKDGT---LKL-LWVD-ETRPVLQGARLSAWEYHYDGIPLKLISD------NMAGFVMQQGKVDAIIV 244 (356)
T ss_pred ccchHHHHHHHHHHcCC---eEE-EEEC-CCCchhhHHHHHHHHHHHCCCCEEEEeh------hHHHHHhhhcCCCEEEE
Confidence 34678887777777774 344 3333 44454333333 3678999999862 12334444 5777666
Q ss_pred ecccccC
Q 023530 211 ARYMQPV 217 (281)
Q Consensus 211 AgYMrIL 217 (281)
|=-+|.
T Consensus 245 -GAd~I~ 250 (356)
T PRK08334 245 -GADRIV 250 (356)
T ss_pred -CccEEe
Confidence 334443
No 361
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=40.22 E-value=1.5e+02 Score=24.53 Aligned_cols=78 Identities=12% Similarity=0.111 Sum_probs=42.5
Q ss_pred eeEEEEeeCCh---hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHhCC
Q 023530 129 YKVAVLASKQE---HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (281)
Q Consensus 129 ~rIavl~Sg~G---snL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~~~ 205 (281)
+||.|..+|+- .-.++++.... +.+.+.=+++..-....++..+.+.++++||+......+.-. + +.+++.
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~-~~~~v~SaG~~~~~g~~~~~~a~~~l~~~Gid~~~h~s~~lt-~----~~~~~~ 76 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRL-PGVKVKSAGVHGLVKHPADATAADVAANHGVSLEGHAGRKLT-A----EMARNY 76 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhc-CCeEEEcccccCCCCCCCCHHHHHHHHHcCCCcCCCccCcCC-H----HHHhhC
Confidence 58888888884 33455655432 223333344432111114567888999999986432111111 1 223478
Q ss_pred CEEEEec
Q 023530 206 DFLVLAR 212 (281)
Q Consensus 206 DlIVLAg 212 (281)
|+|+...
T Consensus 77 DlIl~M~ 83 (144)
T PRK11391 77 DLILAME 83 (144)
T ss_pred CEEEECC
Confidence 9999864
No 362
>PRK07714 hypothetical protein; Provisional
Probab=40.06 E-value=52 Score=25.73 Aligned_cols=59 Identities=12% Similarity=0.161 Sum_probs=34.3
Q ss_pred EeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHh
Q 023530 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (281)
Q Consensus 134 l~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~ 203 (281)
+++|...++ ++++.|+ +..+.+-+|-++.-...+..+|+.++||++.+.++ +++-.++-
T Consensus 19 ~v~G~~~v~----~al~~g~--~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~~sk-----~eLG~a~G 77 (100)
T PRK07714 19 VISGEELVL----KEVRSGK--AKLVLLSEDASVNTTKKITDKCTYYNVPMRKVENR-----QQLGHAIG 77 (100)
T ss_pred eeecHHHHH----HHHHhCC--ceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEeCCH-----HHHHHHhC
Confidence 455554444 4444564 45666666653211235677899999999876532 24555555
No 363
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=39.92 E-value=1.5e+02 Score=29.29 Aligned_cols=71 Identities=17% Similarity=0.246 Sum_probs=35.0
Q ss_pred CeeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhC---CCCEEEeCCCCCChHHHHHHHHh
Q 023530 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH---GIPYHYLCAKENEREEELLELVQ 203 (281)
Q Consensus 128 ~~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~---gIP~~~i~~k~~~~e~~l~~~L~ 203 (281)
|+||.|+++|+ |+.....+. ++++ .+|.. .++ .... .+.+.+. ++.+..++... .+++.++|+
T Consensus 1 m~~ilviGaG~Vg~~va~~la--~~~d--~~V~i--AdR---s~~~-~~~i~~~~~~~v~~~~vD~~d---~~al~~li~ 67 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLA--QNGD--GEVTI--ADR---SKEK-CARIAELIGGKVEALQVDAAD---VDALVALIK 67 (389)
T ss_pred CCcEEEECCchhHHHHHHHHH--hCCC--ceEEE--EeC---CHHH-HHHHHhhccccceeEEecccC---hHHHHHHHh
Confidence 57999999987 443322222 2354 45543 333 1122 3334344 47777777221 224445555
Q ss_pred CCCEEEEe
Q 023530 204 NTDFLVLA 211 (281)
Q Consensus 204 ~~DlIVLA 211 (281)
+.|+|+-|
T Consensus 68 ~~d~VIn~ 75 (389)
T COG1748 68 DFDLVINA 75 (389)
T ss_pred cCCEEEEe
Confidence 44554443
No 364
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=39.81 E-value=84 Score=28.97 Aligned_cols=65 Identities=14% Similarity=0.216 Sum_probs=33.0
Q ss_pred eeEEEEeeCC-h-hHHHHHHHhhhcCCCC-eeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHhCC
Q 023530 129 YKVAVLASKQ-E-HCLVDFLYGWQEGKLP-VEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (281)
Q Consensus 129 ~rIavl~Sg~-G-snL~aLl~~~~~g~l~-~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~~~ 205 (281)
+||+|++.|. | +-+..|++ .|..+ .+| .++|+ ........++++|+. ..+. ..+.++++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~---~g~~~~~~I--~v~~r---~~~~~~~l~~~~g~~--~~~~--------~~e~~~~a 64 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMIN---KNIVSPDQI--ICSDL---NVSNLKNASDKYGIT--ITTN--------NNEVANSA 64 (272)
T ss_pred CeEEEECccHHHHHHHHHHHH---CCCCCCceE--EEECC---CHHHHHHHHHhcCcE--EeCC--------cHHHHhhC
Confidence 4799999998 4 33334443 34322 233 34554 222334445557752 2221 11234477
Q ss_pred CEEEEe
Q 023530 206 DFLVLA 211 (281)
Q Consensus 206 DlIVLA 211 (281)
|+|+||
T Consensus 65 DiIiLa 70 (272)
T PRK12491 65 DILILS 70 (272)
T ss_pred CEEEEE
Confidence 888877
No 365
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=39.79 E-value=40 Score=27.52 Aligned_cols=84 Identities=19% Similarity=0.164 Sum_probs=49.6
Q ss_pred CeeEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhC-CCCEEEeCCCCCChHHHHHHHHhC
Q 023530 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH-GIPYHYLCAKENEREEELLELVQN 204 (281)
Q Consensus 128 ~~rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~-gIP~~~i~~k~~~~e~~l~~~L~~ 204 (281)
.+|+.|+++|+- ..+.+|.+. |- .+| .|+|| ....+.++|+++ +..+..++- + ++.+.+.+
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~---g~--~~i--~i~nR---t~~ra~~l~~~~~~~~~~~~~~-----~-~~~~~~~~ 75 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAAL---GA--KEI--TIVNR---TPERAEALAEEFGGVNIEAIPL-----E-DLEEALQE 75 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHT---TS--SEE--EEEES---SHHHHHHHHHHHTGCSEEEEEG-----G-GHCHHHHT
T ss_pred CCEEEEECCHHHHHHHHHHHHHc---CC--CEE--EEEEC---CHHHHHHHHHHcCccccceeeH-----H-HHHHHHhh
Confidence 568999999762 333333332 31 123 45676 344577888887 233333321 1 23356669
Q ss_pred CCEEEEe--cccccCChhHHhhhcC
Q 023530 205 TDFLVLA--RYMQPVPLQKEAYLGY 227 (281)
Q Consensus 205 ~DlIVLA--gYMrILs~~fl~~~~~ 227 (281)
+|+||-| .=|.+++++.++....
T Consensus 76 ~DivI~aT~~~~~~i~~~~~~~~~~ 100 (135)
T PF01488_consen 76 ADIVINATPSGMPIITEEMLKKASK 100 (135)
T ss_dssp ESEEEE-SSTTSTSSTHHHHTTTCH
T ss_pred CCeEEEecCCCCcccCHHHHHHHHh
Confidence 9999998 4456888888877653
No 366
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=39.71 E-value=1.7e+02 Score=28.08 Aligned_cols=91 Identities=10% Similarity=0.098 Sum_probs=58.1
Q ss_pred CCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCC-hhHHHHHHhCCCCEE-EeCCCCCChHHHHHHH
Q 023530 124 DIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN-SHVIRFLERHGIPYH-YLCAKENEREEELLEL 201 (281)
Q Consensus 124 ~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~-a~~~~~A~~~gIP~~-~i~~k~~~~e~~l~~~ 201 (281)
..+++.||.=+++|.|.-+-+.+... +..+.+|.++=-+ | .+ ..+.+.+++.|+.-. .+.. .+-.+.+-++.
T Consensus 132 ~~g~pvrIlDIAaG~GRYvlDal~~~--~~~~~~i~LrDys-~--~Nv~~g~~li~~~gL~~i~~f~~-~dAfd~~~l~~ 205 (311)
T PF12147_consen 132 EQGRPVRILDIAAGHGRYVLDALEKH--PERPDSILLRDYS-P--INVEKGRALIAERGLEDIARFEQ-GDAFDRDSLAA 205 (311)
T ss_pred hcCCceEEEEeccCCcHHHHHHHHhC--CCCCceEEEEeCC-H--HHHHHHHHHHHHcCCccceEEEe-cCCCCHhHhhc
Confidence 45788999999999996555555432 2223455544333 1 12 467889999998754 4431 11223344556
Q ss_pred Hh-CCCEEEEecccccCChh
Q 023530 202 VQ-NTDFLVLARYMQPVPLQ 220 (281)
Q Consensus 202 L~-~~DlIVLAgYMrILs~~ 220 (281)
++ +|+++|+.|---.+++.
T Consensus 206 l~p~P~l~iVsGL~ElF~Dn 225 (311)
T PF12147_consen 206 LDPAPTLAIVSGLYELFPDN 225 (311)
T ss_pred cCCCCCEEEEecchhhCCcH
Confidence 66 89999999988888773
No 367
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=39.41 E-value=2.2e+02 Score=28.38 Aligned_cols=86 Identities=16% Similarity=0.184 Sum_probs=47.6
Q ss_pred CeeEEEEeeCChhHHHHHHHhhhc-CCCCeeEEEEEeCCCCC-------CC-hhHHHHHHhCCCCEEEeCCCCCChH--H
Q 023530 128 KYKVAVLASKQEHCLVDFLYGWQE-GKLPVEITCVISNHDRG-------PN-SHVIRFLERHGIPYHYLCAKENERE--E 196 (281)
Q Consensus 128 ~~rIavl~Sg~GsnL~aLl~~~~~-g~l~~eI~~Visn~pd~-------~~-a~~~~~A~~~gIP~~~i~~k~~~~e--~ 196 (281)
..|+.|.++|+. -+.+++..++ +....++++++.+.+.. .+ ....+.+++++|....+.-...+.+ +
T Consensus 143 ~rrVLIvGaG~~--g~~l~~~L~~~~~~g~~vVGfiDdd~~~g~~VpvlG~~~dL~~~v~~~~IdeViIAip~~~~~~l~ 220 (463)
T PRK10124 143 KRMVAVAGDLPA--GQMLLESFRNEPWLGFEVVGVYHDPKPGGVSNDWAGNLQQLVEDAKAGKIHNVYIAMSMCDGARVK 220 (463)
T ss_pred CCcEEEEECCHH--HHHHHHHHhcCccCCeEEEEEEeCCccccCCCCcCCCHHHHHHHHHhCCCCEEEEeCCCcchHHHH
Confidence 457888888763 2344444433 34567899998764210 01 1244567777887766652211111 3
Q ss_pred HHHHHHh--CCCEEEEecccc
Q 023530 197 ELLELVQ--NTDFLVLARYMQ 215 (281)
Q Consensus 197 ~l~~~L~--~~DlIVLAgYMr 215 (281)
++++.++ .+++.++.++..
T Consensus 221 ell~~~~~~~v~V~ivP~l~~ 241 (463)
T PRK10124 221 KLVRQLADTTCSVLLIPDVFT 241 (463)
T ss_pred HHHHHHHHcCCeEEEecchhh
Confidence 4555554 567666666543
No 368
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=39.35 E-value=75 Score=31.42 Aligned_cols=67 Identities=15% Similarity=0.219 Sum_probs=39.8
Q ss_pred CeeEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCC-CCEEEeCCCCCChHHHHHHHHhC
Q 023530 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHG-IPYHYLCAKENEREEELLELVQN 204 (281)
Q Consensus 128 ~~rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~g-IP~~~i~~k~~~~e~~l~~~L~~ 204 (281)
.+|+.|+++|+- ....+|.. .| +. ...|+|+ ....+.++|++++ ..+.. . +++.+.+.+
T Consensus 181 ~kkvlviGaG~~a~~va~~L~~---~g---~~-~I~V~nR---t~~ra~~La~~~~~~~~~~-------~-~~l~~~l~~ 242 (414)
T PRK13940 181 SKNVLIIGAGQTGELLFRHVTA---LA---PK-QIMLANR---TIEKAQKITSAFRNASAHY-------L-SELPQLIKK 242 (414)
T ss_pred CCEEEEEcCcHHHHHHHHHHHH---cC---CC-EEEEECC---CHHHHHHHHHHhcCCeEec-------H-HHHHHHhcc
Confidence 368999999863 23333322 23 22 3467887 3345688888876 43222 1 134566678
Q ss_pred CCEEEEec
Q 023530 205 TDFLVLAR 212 (281)
Q Consensus 205 ~DlIVLAg 212 (281)
+|+||.|-
T Consensus 243 aDiVI~aT 250 (414)
T PRK13940 243 ADIIIAAV 250 (414)
T ss_pred CCEEEECc
Confidence 89998874
No 369
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=39.21 E-value=2.4e+02 Score=25.49 Aligned_cols=57 Identities=14% Similarity=0.113 Sum_probs=35.1
Q ss_pred CeeEEEEeeCC-h-hHHHHHHHhhhcCCCCeeEEEEEeCCCCC--C--ChhHHHHHHhCCCCEEEeC
Q 023530 128 KYKVAVLASKQ-E-HCLVDFLYGWQEGKLPVEITCVISNHDRG--P--NSHVIRFLERHGIPYHYLC 188 (281)
Q Consensus 128 ~~rIavl~Sg~-G-snL~aLl~~~~~g~l~~eI~~Visn~pd~--~--~a~~~~~A~~~gIP~~~i~ 188 (281)
..+|+|-.||+ + +.+-+|+... .+ .++.++..++... . -..+.+.|+.+|||++.++
T Consensus 22 ~~~V~vglSGGiDSsvla~l~~~~-~~---~~~~~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~i~ 84 (250)
T TIGR00552 22 AKGVVLGLSGGIDSAVVAALCVEA-LG---EQNHALLLPHSVQTPEQDVQDALALAEPLGINYKNID 84 (250)
T ss_pred CCCEEEECCCcHHHHHHHHHHHHh-hC---CceEEEEECCccCCCHHHHHHHHHHHHHhCCeEEEEc
Confidence 34799999998 3 4444444332 12 2566665553110 0 1257889999999999986
No 370
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=39.18 E-value=1.8e+02 Score=27.52 Aligned_cols=52 Identities=15% Similarity=0.291 Sum_probs=28.9
Q ss_pred EEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHH---HhCCCCEEEeC
Q 023530 132 AVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFL---ERHGIPYHYLC 188 (281)
Q Consensus 132 avl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A---~~~gIP~~~i~ 188 (281)
.||.-++ ++.+..|..+.+.|. +..| +++ +.+|...++..| .+.|||+..++
T Consensus 123 ~ILT~~~S~tv~~~l~~A~~~~k-~~~V--~v~--EsrP~~~G~~~a~~L~~~GI~vtlI~ 178 (310)
T PRK08535 123 VIMTHCNSSAALSVIKTAHEQGK-DIEV--IAT--ETRPRNQGHITAKELAEYGIPVTLIV 178 (310)
T ss_pred EEEEeCCcHHHHHHHHHHHHCCC-eEEE--EEe--cCCchhhHHHHHHHHHHCCCCEEEEe
Confidence 3555554 566666666666664 2333 333 222443334443 56799999987
No 371
>PRK06849 hypothetical protein; Provisional
Probab=39.13 E-value=2.5e+02 Score=26.83 Aligned_cols=75 Identities=19% Similarity=0.203 Sum_probs=37.4
Q ss_pred CCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC-CCCC--ChHHHHHHHHh
Q 023530 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKEN--EREEELLELVQ 203 (281)
Q Consensus 127 ~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~-~k~~--~~e~~l~~~L~ 203 (281)
.++||.|++.+.+.++. ++...... ..+|.++-++ ++ +-+.....+.+ ++.++ .+.+ .+-+++.++++
T Consensus 3 ~~~~VLI~G~~~~~~l~-iar~l~~~--G~~Vi~~d~~-~~-~~~~~s~~~d~----~~~~p~p~~d~~~~~~~L~~i~~ 73 (389)
T PRK06849 3 TKKTVLITGARAPAALE-LARLFHNA--GHTVILADSL-KY-PLSRFSRAVDG----FYTIPSPRWDPDAYIQALLSIVQ 73 (389)
T ss_pred CCCEEEEeCCCcHHHHH-HHHHHHHC--CCEEEEEeCC-ch-HHHHHHHhhhh----eEEeCCCCCCHHHHHHHHHHHHH
Confidence 46788888766654443 44444332 3577766554 21 11111122222 34443 2211 12256777776
Q ss_pred --CCCEEEE
Q 023530 204 --NTDFLVL 210 (281)
Q Consensus 204 --~~DlIVL 210 (281)
++|+|+-
T Consensus 74 ~~~id~vIP 82 (389)
T PRK06849 74 RENIDLLIP 82 (389)
T ss_pred HcCCCEEEE
Confidence 7898875
No 372
>PRK08462 biotin carboxylase; Validated
Probab=39.06 E-value=87 Score=30.62 Aligned_cols=77 Identities=10% Similarity=0.150 Sum_probs=46.3
Q ss_pred CCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC-CC-CCCh--HHHHHHHH
Q 023530 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AK-ENER--EEELLELV 202 (281)
Q Consensus 127 ~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~-~k-~~~~--e~~l~~~L 202 (281)
.++||.|+..|.. ..+ ++.+.+ ++..++++|.++ +| ++++....|.+. +.++ .. ..++ -++++++.
T Consensus 3 ~~k~ili~~~g~~-~~~-~~~~~~--~~G~~~v~~~~~-~d-~~~~~~~~ad~~----~~~~~~~~~~~y~~~~~l~~~~ 72 (445)
T PRK08462 3 EIKRILIANRGEI-ALR-AIRTIQ--EMGKEAIAIYST-AD-KDALYLKYADAK----ICIGGAKSSESYLNIPAIISAA 72 (445)
T ss_pred CCCEEEEECCcHH-HHH-HHHHHH--HcCCCEEEEech-hh-cCCchhhhCCEE----EEeCCCchhcccCCHHHHHHHH
Confidence 3679999988875 333 444433 234688888776 55 466777777542 2332 11 1112 24677777
Q ss_pred h--CCCEEEEeccc
Q 023530 203 Q--NTDFLVLARYM 214 (281)
Q Consensus 203 ~--~~DlIVLAgYM 214 (281)
+ ++|.|+- ||.
T Consensus 73 ~~~~~D~i~p-g~g 85 (445)
T PRK08462 73 EIFEADAIFP-GYG 85 (445)
T ss_pred HHcCCCEEEE-CCC
Confidence 7 8998886 554
No 373
>COG1828 PurS Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]
Probab=38.99 E-value=1.2e+02 Score=23.60 Aligned_cols=47 Identities=13% Similarity=0.145 Sum_probs=35.2
Q ss_pred HHHHHHHHhCCCe-EeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhc
Q 023530 57 AKLSECIASRGGN-ILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFN 114 (281)
Q Consensus 57 a~VS~~La~~giN-I~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~ 114 (281)
.+|.+.|...|.+ +.++++ |.++ .++++- .+.+..++.+.++|+++=
T Consensus 20 ~ti~~aL~~lg~~~V~~vR~------gK~~-el~ld~----~~~e~a~~~v~~mcekLL 67 (83)
T COG1828 20 ETIEKALHRLGYNEVSDVRV------GKVI-ELELDA----ESEEKAEEEVKEMCEKLL 67 (83)
T ss_pred HHHHHHHHHcCCcccceeee------eeEE-EEEecC----cchhHHHHHHHHHHHHHh
Confidence 6899999999988 999987 5543 444542 246778889999998863
No 374
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=38.42 E-value=3.2e+02 Score=26.05 Aligned_cols=59 Identities=14% Similarity=0.082 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCCh---hHHHHHHHhhhcCCCCeeEEEEEeCC
Q 023530 97 WPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE---HCLVDFLYGWQEGKLPVEITCVISNH 165 (281)
Q Consensus 97 ~~~~~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~G---snL~aLl~~~~~g~l~~eI~~Visn~ 165 (281)
+..+.+.+.++.+....|. .+-.+--|+|-.||+. .+|.+|++.+++-. ..-++||||-
T Consensus 57 i~~~~I~~~~~~~~~~~g~--------ea~~pd~vtis~~GEPTLy~~L~elI~~~k~~g--~~~tflvTNg 118 (296)
T COG0731 57 IVEESILEELKLLLGYKGD--------EATEPDHVTISLSGEPTLYPNLGELIEEIKKRG--KKTTFLVTNG 118 (296)
T ss_pred ecHHHHHHHHHHHhccccc--------ccCCCCEEEEeCCCCcccccCHHHHHHHHHhcC--CceEEEEeCC
Confidence 4568889999888876651 2234456888888885 89999999887632 1367788984
No 375
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=38.33 E-value=1.2e+02 Score=28.09 Aligned_cols=58 Identities=14% Similarity=0.215 Sum_probs=36.9
Q ss_pred CeeEEEEeeCCh-----hHHHHHHHhhhcCCCCeeEEEEEeCCCC-------C--C---------------------Chh
Q 023530 128 KYKVAVLASKQE-----HCLVDFLYGWQEGKLPVEITCVISNHDR-------G--P---------------------NSH 172 (281)
Q Consensus 128 ~~rIavl~Sg~G-----snL~aLl~~~~~g~l~~eI~~Visn~pd-------~--~---------------------~a~ 172 (281)
+-||+||+-|.| +.--+-+.+ -++.+++.+..+|+=| + | |.-
T Consensus 124 ~grVvIf~gGtg~P~fTTDt~AALrA---~ei~ad~ll~atn~VDGVY~~DPkk~pdA~~~~~Lty~e~l~~~l~vmD~t 200 (238)
T COG0528 124 KGRVVIFGGGTGNPGFTTDTAAALRA---EEIEADVLLKATNKVDGVYDADPKKDPDAKKYDTLTYDEVLKIGLKVMDPT 200 (238)
T ss_pred cCCEEEEeCCCCCCCCchHHHHHHHH---HHhCCcEEEEeccCCCceeCCCCCCCCCceecccCCHHHHHHhcCeeecHH
Confidence 469999999665 222222333 2334666666666211 1 1 245
Q ss_pred HHHHHHhCCCCEEEeC
Q 023530 173 VIRFLERHGIPYHYLC 188 (281)
Q Consensus 173 ~~~~A~~~gIP~~~i~ 188 (281)
+..+|++.+||+.+++
T Consensus 201 A~~l~~~~~i~i~Vfn 216 (238)
T COG0528 201 AFSLARDNGIPIIVFN 216 (238)
T ss_pred HHHHHHHcCCcEEEEe
Confidence 7889999999999998
No 376
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=38.30 E-value=64 Score=27.16 Aligned_cols=56 Identities=16% Similarity=0.230 Sum_probs=33.7
Q ss_pred CeeEEEEeeCChhHHHHHHHh------hhc--C-CCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC
Q 023530 128 KYKVAVLASKQEHCLVDFLYG------WQE--G-KLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (281)
Q Consensus 128 ~~rIavl~Sg~GsnL~aLl~~------~~~--g-~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~ 188 (281)
+.-++|.+|++|+..+-+... ++. + .....++ +||++ +.+..++|..++.++..++
T Consensus 73 ~~tlvi~iSkSG~T~Et~~~~~~a~~~l~~~~~~~~~~~~v-aiT~~----~s~l~~~a~~~~~~~~~~~ 137 (158)
T cd05015 73 ETTLFIVISKSGTTLETLANARLAREWLEEAGGDDLAKHFV-AITDN----GSGLLKKAGIEGLNTFEIP 137 (158)
T ss_pred ccEEEEEEECCcCCHHHHHHHHHHHHHHHHhccccccceEE-EEcCC----ChHHHHHcCCCcceeeeCC
Confidence 345789999999555443211 111 1 1234455 66763 3456666888999988877
No 377
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=38.22 E-value=2.8e+02 Score=26.48 Aligned_cols=79 Identities=10% Similarity=0.167 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCC-hhHHHH-HHHhhhcCCCCeeEEEEEeCCCCCCC-h--h
Q 023530 98 PREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQ-EHCLVD-FLYGWQEGKLPVEITCVISNHDRGPN-S--H 172 (281)
Q Consensus 98 ~~~~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~-GsnL~a-Ll~~~~~g~l~~eI~~Visn~pd~~~-a--~ 172 (281)
+.++-++.|+++.+++.-. .+.+..++|.+||+ +|.+.+ ++.. +-| .++.+|--++.-..+ + .
T Consensus 37 ~~~~~~~~l~~l~~~~k~~--------~~~~yD~iV~lSGGkDSs~la~ll~~-~~g---l~~l~vt~~~~~~~e~~~~n 104 (343)
T TIGR03573 37 DWDEREKELEELVDKIKKK--------GGGRYDCIIGVSGGKDSTYQAHVLKK-KLG---LNPLLVTVDPGWNTELGVKN 104 (343)
T ss_pred CHHHHHHHHHHHHHHHHhc--------CCCCCCEEEECCCCHHHHHHHHHHHH-HhC---CceEEEEECCCCCCHHHHHH
Confidence 4455567788887765311 12237899999998 455444 5532 123 234433333221112 2 4
Q ss_pred HHHHHHhCCCCEEEeC
Q 023530 173 VIRFLERHGIPYHYLC 188 (281)
Q Consensus 173 ~~~~A~~~gIP~~~i~ 188 (281)
+..+|+.+|++.+.+.
T Consensus 105 ~~~~~~~lgvd~~~i~ 120 (343)
T TIGR03573 105 LNNLIKKLGFDLHTIT 120 (343)
T ss_pred HHHHHHHcCCCeEEEe
Confidence 7788999999999876
No 378
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=38.11 E-value=1.7e+02 Score=27.73 Aligned_cols=71 Identities=20% Similarity=0.237 Sum_probs=36.8
Q ss_pred CCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHh-
Q 023530 125 IDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ- 203 (281)
Q Consensus 125 ~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~- 203 (281)
..+++||.|+++|... ..++.+.++ +..++..+-.+ |++++...|.. ++.++. .+.+++.+.++
T Consensus 9 ~~~~~~ilIiG~g~~~--~~~~~a~~~--~G~~v~~~~~~----~~~~~~~~ad~----~~~~~~---~d~~~l~~~~~~ 73 (395)
T PRK09288 9 SPSATRVMLLGSGELG--KEVAIEAQR--LGVEVIAVDRY----ANAPAMQVAHR----SHVIDM---LDGDALRAVIER 73 (395)
T ss_pred CCCCCEEEEECCCHHH--HHHHHHHHH--CCCEEEEEeCC----CCCchHHhhhh----eEECCC---CCHHHHHHHHHH
Confidence 3456789999887421 222332221 23577655443 34555555543 233331 12345667766
Q ss_pred -CCCEEEE
Q 023530 204 -NTDFLVL 210 (281)
Q Consensus 204 -~~DlIVL 210 (281)
++|+|+.
T Consensus 74 ~~id~vi~ 81 (395)
T PRK09288 74 EKPDYIVP 81 (395)
T ss_pred hCCCEEEE
Confidence 7887765
No 379
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=38.02 E-value=14 Score=26.22 Aligned_cols=14 Identities=7% Similarity=0.299 Sum_probs=13.0
Q ss_pred CCCCchhHHHHhcC
Q 023530 242 YFNMHMPKHMILTD 255 (281)
Q Consensus 242 ~~g~~vh~a~l~~d 255 (281)
+||.++|.|+..||
T Consensus 2 lYgvaiq~AiasGD 15 (53)
T PF08898_consen 2 LYGVAIQQAIASGD 15 (53)
T ss_pred CchHHHHHHHHcCc
Confidence 69999999999998
No 380
>PLN02256 arogenate dehydrogenase
Probab=37.69 E-value=1.4e+02 Score=28.03 Aligned_cols=68 Identities=12% Similarity=0.281 Sum_probs=37.1
Q ss_pred CCCeeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHh-
Q 023530 126 DPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ- 203 (281)
Q Consensus 126 ~~~~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~- 203 (281)
.+++||+|++.|. |..+..-+.+ .| .+|.+ +..+ + ..+.|+++|+.+ .+ ..+ +.+.
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~--~G---~~V~~-~d~~---~---~~~~a~~~gv~~--~~----~~~----e~~~~ 91 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVK--QG---HTVLA-TSRS---D---YSDIAAELGVSF--FR----DPD----DFCEE 91 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHh--CC---CEEEE-EECc---c---HHHHHHHcCCee--eC----CHH----HHhhC
Confidence 3567999999987 5444333332 23 35553 3322 1 246777888743 11 111 2233
Q ss_pred CCCEEEEecccc
Q 023530 204 NTDFLVLARYMQ 215 (281)
Q Consensus 204 ~~DlIVLAgYMr 215 (281)
++|+|++|=--.
T Consensus 92 ~aDvVilavp~~ 103 (304)
T PLN02256 92 HPDVVLLCTSIL 103 (304)
T ss_pred CCCEEEEecCHH
Confidence 688888885544
No 381
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=37.61 E-value=76 Score=25.53 Aligned_cols=34 Identities=6% Similarity=0.240 Sum_probs=22.7
Q ss_pred eeEEEEee-CC-hhHHHHHHHhhhcCCCCeeEEEEEeCCC
Q 023530 129 YKVAVLAS-KQ-EHCLVDFLYGWQEGKLPVEITCVISNHD 166 (281)
Q Consensus 129 ~rIavl~S-g~-GsnL~aLl~~~~~g~l~~eI~~Visn~p 166 (281)
+||+|.+. |+ |+-+...+.. .. ..++++++..++
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~--~~--~~~lv~~v~~~~ 36 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILE--SP--GFELVGAVDRKP 36 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHH--ST--TEEEEEEEETTT
T ss_pred CEEEEECCCCHHHHHHHHHHHh--cC--CcEEEEEEecCC
Confidence 58888888 66 6555544443 12 379999988764
No 382
>TIGR01269 Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric. This model describes tyrosine 3-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tryptophan 5-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=37.40 E-value=1.8e+02 Score=29.39 Aligned_cols=65 Identities=5% Similarity=-0.025 Sum_probs=42.5
Q ss_pred ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccC-CC---CeEEEEEEEEeCCCCCCHHHHHHHHHH
Q 023530 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPE-KK---NVFYSRSEFIFDPIKWPREQMDEDFFK 108 (281)
Q Consensus 41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~-~~---g~F~mrlev~~p~~~~~~~~L~~~L~~ 108 (281)
....+++...+ +|-++.+-+.+.++++||.++++.... .. ..|..-+.++.+. .++.++-+.|..
T Consensus 38 ~~~~~~~~~~~-~g~L~~~l~~f~~~~inl~hiEsr~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~l~~ 106 (457)
T TIGR01269 38 QNNQFYIRTKE-ISSLHRILKYIETFKLNLVHFETRPTRTLSNADVDYSCLITLEANE--INMSLLIESLRG 106 (457)
T ss_pred eeEEEEeccCc-chhHHHHHHHHHHcCCcEEEeecCCccccCCCCCceEEEEEEeccH--hhHHHHHHHHHh
Confidence 45577777666 999999999999999999999986532 11 3444445555432 234444444444
No 383
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=37.30 E-value=2e+02 Score=25.51 Aligned_cols=94 Identities=17% Similarity=0.176 Sum_probs=54.6
Q ss_pred eEEEEeeCChhHHHHHHHhhhcCCC------------------------CeeEEEEEeCCCCCCChhHHHHHHhCCCCEE
Q 023530 130 KVAVLASKQEHCLVDFLYGWQEGKL------------------------PVEITCVISNHDRGPNSHVIRFLERHGIPYH 185 (281)
Q Consensus 130 rIavl~Sg~GsnL~aLl~~~~~g~l------------------------~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~ 185 (281)
.++|+-.|.--++..+++..+++.- ..+.-++||.+ ..+...|+++|+++.
T Consensus 25 ~~vflL~~~i~~ik~ivk~lK~~gK~vfiHvDLv~Gl~~~e~~i~fi~~~~~pdGIISTk-----~~~i~~Akk~~~~aI 99 (181)
T COG1954 25 QYVFLLTGHILNIKEIVKKLKNRGKTVFIHVDLVEGLSNDEVAIEFIKEVIKPDGIISTK-----SNVIKKAKKLGILAI 99 (181)
T ss_pred eEEEEEechhhhHHHHHHHHHhCCcEEEEEeHHhcccCCchHHHHHHHHhccCCeeEEcc-----HHHHHHHHHcCCcee
Confidence 5677777777777777776654320 12345677765 357889999999976
Q ss_pred E----eCCCCCChHHHHHHHHh-CCCEE-EEecccccCChhHHhhhcCCce
Q 023530 186 Y----LCAKENEREEELLELVQ-NTDFL-VLARYMQPVPLQKEAYLGYKLL 230 (281)
Q Consensus 186 ~----i~~k~~~~e~~l~~~L~-~~DlI-VLAgYMrILs~~fl~~~~~riI 230 (281)
+ +++ ...+..+..+.+ +||+| ||=|-|--+=..+.++.+..+|
T Consensus 100 qR~FilDS--~Al~~~~~~i~~~~pD~iEvLPGv~Pkvi~~i~~~t~~piI 148 (181)
T COG1954 100 QRLFILDS--IALEKGIKQIEKSEPDFIEVLPGVMPKVIKEITEKTHIPII 148 (181)
T ss_pred eeeeeecH--HHHHHHHHHHHHcCCCEEEEcCcccHHHHHHHHHhcCCCEE
Confidence 5 221 112333333334 89998 7778554433344444443333
No 384
>PRK11579 putative oxidoreductase; Provisional
Probab=37.13 E-value=2e+02 Score=27.02 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=20.0
Q ss_pred CCeeEEEEeeCCh-hH-HHHHHHhhhcCCCCeeEEEEEeC
Q 023530 127 PKYKVAVLASKQE-HC-LVDFLYGWQEGKLPVEITCVISN 164 (281)
Q Consensus 127 ~~~rIavl~Sg~G-sn-L~aLl~~~~~g~l~~eI~~Visn 164 (281)
.++||+|++.|.- .. ....+.. .. .+++++|...
T Consensus 3 ~~irvgiiG~G~i~~~~~~~~~~~--~~--~~~l~av~d~ 38 (346)
T PRK11579 3 DKIRVGLIGYGYASKTFHAPLIAG--TP--GLELAAVSSS 38 (346)
T ss_pred CcceEEEECCCHHHHHHHHHHHhh--CC--CCEEEEEECC
Confidence 3679999999984 22 1122222 12 3788888653
No 385
>PLN02688 pyrroline-5-carboxylate reductase
Probab=37.09 E-value=1.5e+02 Score=26.60 Aligned_cols=47 Identities=9% Similarity=0.221 Sum_probs=23.6
Q ss_pred eeEEEEeeCC-hh-HHHHHHHhhhcCCCCeeEEEEEe-CCCCCCChhHHHHHHhCCCC
Q 023530 129 YKVAVLASKQ-EH-CLVDFLYGWQEGKLPVEITCVIS-NHDRGPNSHVIRFLERHGIP 183 (281)
Q Consensus 129 ~rIavl~Sg~-Gs-nL~aLl~~~~~g~l~~eI~~Vis-n~pd~~~a~~~~~A~~~gIP 183 (281)
+||+|++.|. |+ -...|++ .|.++. ...+++ |+ ... ..+.+.++|+.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~---~g~~~~-~~i~v~~~r---~~~-~~~~~~~~g~~ 50 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVA---SGVVPP-SRISTADDS---NPA-RRDVFQSLGVK 50 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHH---CCCCCc-ceEEEEeCC---CHH-HHHHHHHcCCE
Confidence 5799999887 43 3334443 243221 223445 54 122 23445567764
No 386
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=37.05 E-value=2.1e+02 Score=24.60 Aligned_cols=71 Identities=14% Similarity=0.119 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHH
Q 023530 99 REQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLE 178 (281)
Q Consensus 99 ~~~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~ 178 (281)
...+.+.+++.++++|.. +-++.+.........++...+.. +.++|....+ ++...++.+.
T Consensus 14 ~~~~~~~i~~~~~~~g~~--------------~~~~~~~~~~~~~~~i~~~~~~~----vdgiii~~~~-~~~~~~~~~~ 74 (266)
T cd06278 14 YSELLEALSRALQARGYQ--------------PLLINTDDDEDLDAALRQLLQYR----VDGVIVTSGT-LSSELAEECR 74 (266)
T ss_pred HHHHHHHHHHHHHHCCCe--------------EEEEcCCCCHHHHHHHHHHHHcC----CCEEEEecCC-CCHHHHHHHh
Confidence 456777788888887753 11222222223333444333332 2222222111 3345577888
Q ss_pred hCCCCEEEeC
Q 023530 179 RHGIPYHYLC 188 (281)
Q Consensus 179 ~~gIP~~~i~ 188 (281)
+.|||+..++
T Consensus 75 ~~~ipvV~~~ 84 (266)
T cd06278 75 RNGIPVVLIN 84 (266)
T ss_pred hcCCCEEEEC
Confidence 8999999987
No 387
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=36.61 E-value=1e+02 Score=25.85 Aligned_cols=77 Identities=10% Similarity=0.027 Sum_probs=41.3
Q ss_pred eEEEEeeCChhH---HHHHHHhhhcCCCCeeEEEEEeCCCCC----------CChhHHHHHHhCCCCEEEeCCCCCChHH
Q 023530 130 KVAVLASKQEHC---LVDFLYGWQEGKLPVEITCVISNHDRG----------PNSHVIRFLERHGIPYHYLCAKENEREE 196 (281)
Q Consensus 130 rIavl~Sg~Gsn---L~aLl~~~~~g~l~~eI~~Visn~pd~----------~~a~~~~~A~~~gIP~~~i~~k~~~~e~ 196 (281)
|-+|.++|.|+- +++|.-..+.+.+ .+..||-|+.-. .......+|+.+|++...+.+. .+-++
T Consensus 60 ~~Vv~i~GDG~f~m~~~el~t~~~~~~~--~i~~vV~nN~~~g~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~-~el~~ 136 (157)
T cd02001 60 RKVIVVDGDGSLLMNPGVLLTAGEFTPL--NLILVVLDNRAYGSTGGQPTPSSNVNLEAWAAACGYLVLSAPLL-GGLGS 136 (157)
T ss_pred CcEEEEECchHHHhcccHHHHHHHhcCC--CEEEEEEeCccccccCCcCCCCCCCCHHHHHHHCCCceEEcCCH-HHHHH
Confidence 455778888744 4554443333223 466666554210 0234678999999998876521 11123
Q ss_pred HHHHHHh--CCCEEE
Q 023530 197 ELLELVQ--NTDFLV 209 (281)
Q Consensus 197 ~l~~~L~--~~DlIV 209 (281)
.+.+.++ +|-+|-
T Consensus 137 al~~a~~~~gp~vi~ 151 (157)
T cd02001 137 EFAGLLATTGPTLLH 151 (157)
T ss_pred HHHHHHhCCCCEEEE
Confidence 4445554 455443
No 388
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=36.47 E-value=1.3e+02 Score=27.16 Aligned_cols=90 Identities=16% Similarity=0.067 Sum_probs=43.8
Q ss_pred CeeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHhCCC
Q 023530 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (281)
Q Consensus 128 ~~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~~~D 206 (281)
|++++|++.|+ |+.|--.+.. .| +||. |.++. ........|++.+.- .... +..+..+..|
T Consensus 1 m~~~~i~GtGniG~alA~~~a~--ag---~eV~--igs~r--~~~~~~a~a~~l~~~-i~~~--------~~~dA~~~aD 62 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAK--AG---HEVI--IGSSR--GPKALAAAAAALGPL-ITGG--------SNEDAAALAD 62 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHh--CC---CeEE--EecCC--ChhHHHHHHHhhccc-cccC--------ChHHHHhcCC
Confidence 57899999999 6655433222 23 4554 44331 122234455555543 1111 1223444688
Q ss_pred EEEEec-ccccC--ChhHHhhhcCCcee-ccCC
Q 023530 207 FLVLAR-YMQPV--PLQKEAYLGYKLLE-SLSS 235 (281)
Q Consensus 207 lIVLAg-YMrIL--s~~fl~~~~~riIN-SLLP 235 (281)
.||||= |-.+. -+++-+.+.++|+= ..-|
T Consensus 63 VVvLAVP~~a~~~v~~~l~~~~~~KIvID~tnp 95 (211)
T COG2085 63 VVVLAVPFEAIPDVLAELRDALGGKIVIDATNP 95 (211)
T ss_pred EEEEeccHHHHHhHHHHHHHHhCCeEEEecCCC
Confidence 888872 22221 12333445566665 3444
No 389
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=36.28 E-value=69 Score=28.75 Aligned_cols=44 Identities=14% Similarity=0.280 Sum_probs=24.6
Q ss_pred hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC
Q 023530 140 HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (281)
Q Consensus 140 snL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~ 188 (281)
.-+..|.+.++++ .|.+|+++. ..++..+..+|++.|+|+..++
T Consensus 186 ~~l~~l~~~ik~~----~v~~i~~e~-~~~~~~~~~la~~~g~~vv~ld 229 (256)
T PF01297_consen 186 KDLAELIKLIKEN----KVKCIFTEP-QFSSKLAEALAKETGVKVVYLD 229 (256)
T ss_dssp HHHHHHHHHHHHT----T-SEEEEET-TS-THHHHHHHHCCT-EEEESS
T ss_pred HHHHHHHHHhhhc----CCcEEEecC-CCChHHHHHHHHHcCCcEEEeC
Confidence 5556666666665 355566653 1133456667777787777766
No 390
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=36.20 E-value=54 Score=30.30 Aligned_cols=109 Identities=16% Similarity=0.188 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCC-CCCCCh--
Q 023530 97 WPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNH-DRGPNS-- 171 (281)
Q Consensus 97 ~~~~~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~-pd~~~a-- 171 (281)
.+.+.+.+.|+.+- +.+ .|+-...+-+.+++|=+-.++ .++...++.......+-++++|-=-- ++..+.
T Consensus 39 ~~~~v~~~h~~rl~---~~E--~~Ra~~~Gl~~~vavGvHPr~iP~e~~~~l~~L~~~l~~e~VvAiGEiGLe~~t~~E~ 113 (254)
T COG1099 39 KTAEVYLDHFRRLL---GVE--PERAEKAGLKLKVAVGVHPRAIPPELEEVLEELEELLSNEDVVAIGEIGLEEATDEEK 113 (254)
T ss_pred ccHHHHHHHHHHHH---ccc--hhhHHhhCceeeEEeccCCCCCCchHHHHHHHHHhhcccCCeeEeeecccccCCHHHH
Confidence 45677777777663 222 344334455678887555554 66777777665543333455542110 000111
Q ss_pred ----hHHHHHHhCCCCEEEeCCCCCChH--HHHHHHHh----CCCEEEE
Q 023530 172 ----HVIRFLERHGIPYHYLCAKENERE--EELLELVQ----NTDFLVL 210 (281)
Q Consensus 172 ----~~~~~A~~~gIP~~~i~~k~~~~e--~~l~~~L~----~~DlIVL 210 (281)
.=+++|+++++|+.+.....+|.+ .++++++. +++++|.
T Consensus 114 evf~~QL~LA~e~dvPviVHTPr~nK~e~t~~ildi~~~~~l~~~lvvI 162 (254)
T COG1099 114 EVFREQLELARELDVPVIVHTPRRNKKEATSKILDILIESGLKPSLVVI 162 (254)
T ss_pred HHHHHHHHHHHHcCCcEEEeCCCCcchhHHHHHHHHHHHcCCChhheeh
Confidence 236799999999988762223333 45666665 6777775
No 391
>PRK04148 hypothetical protein; Provisional
Probab=35.72 E-value=2.6e+02 Score=23.37 Aligned_cols=51 Identities=12% Similarity=0.065 Sum_probs=36.8
Q ss_pred CCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC
Q 023530 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (281)
Q Consensus 127 ~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~ 188 (281)
+.+|+++.+.|.|..+...+.. .| .+|.+|=.|. .+.+.|++.++.+.+-+
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~--~G---~~ViaIDi~~------~aV~~a~~~~~~~v~dD 66 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKE--SG---FDVIVIDINE------KAVEKAKKLGLNAFVDD 66 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHH--CC---CEEEEEECCH------HHHHHHHHhCCeEEECc
Confidence 3468999999998655544442 35 5888776662 35888999999888865
No 392
>PLN00200 argininosuccinate synthase; Provisional
Probab=35.60 E-value=1.5e+02 Score=29.47 Aligned_cols=57 Identities=14% Similarity=0.169 Sum_probs=36.3
Q ss_pred CeeEEEEeeCC-hhHH-HHHHHhhhcCCCCeeEEEEEeCCCCC-CC-hhHHHHHHhCCCCE-EEeC
Q 023530 128 KYKVAVLASKQ-EHCL-VDFLYGWQEGKLPVEITCVISNHDRG-PN-SHVIRFLERHGIPY-HYLC 188 (281)
Q Consensus 128 ~~rIavl~Sg~-GsnL-~aLl~~~~~g~l~~eI~~Visn~pd~-~~-a~~~~~A~~~gIP~-~~i~ 188 (281)
+.||+|+.||+ +|.+ -.++.. . +..+|.+|..|-+.. .+ ..+.+.|+++|||. ++++
T Consensus 5 ~~kVvva~SGGlDSsvla~~L~e--~--~G~eViav~id~Gq~~~el~~a~~~A~~lGi~~~~v~d 66 (404)
T PLN00200 5 LNKVVLAYSGGLDTSVILKWLRE--N--YGCEVVCFTADVGQGIEELEGLEAKAKASGAKQLVVKD 66 (404)
T ss_pred CCeEEEEEeCCHHHHHHHHHHHH--h--hCCeEEEEEEECCCChHHHHHHHHHHHHcCCCEEEEEe
Confidence 45999999998 3433 333332 2 235788888876421 01 35788999999985 5555
No 393
>PRK05783 hypothetical protein; Provisional
Probab=35.41 E-value=2.1e+02 Score=22.11 Aligned_cols=60 Identities=10% Similarity=0.058 Sum_probs=40.0
Q ss_pred EEEEEEcCCCcchH----HHHHHHHHhCCC-eEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhh
Q 023530 43 GIHVFHCPDEVGIV----AKLSECIASRGG-NILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMF 113 (281)
Q Consensus 43 ~iltV~G~DrpGIV----a~VS~~La~~gi-NI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l 113 (281)
+.+.|.=.-|+||. .+|.+.|..+|. ++.++++ |.|+ .++++.+ +.++.++..+++|+++
T Consensus 3 ~k~~V~V~lK~gVlDPqG~aI~~aL~~lg~~~V~~VRv------GK~i-el~l~~~----~~e~a~~~v~~mc~~L 67 (84)
T PRK05783 3 YYVELIIINKDSVRDPEGETIQRYVIERYTGNIIEVRA------GKYL-VFKIEAN----SPEEAKELALKIAREG 67 (84)
T ss_pred EEEEEEEEECCCCcCchHHHHHHHHHHcCCCCcceEEe------eEEE-EEEEcCC----CHHHHHHHHHHHHHhc
Confidence 33444444556665 578899988765 3666665 6655 4555532 5677899999999987
No 394
>PLN02712 arogenate dehydrogenase
Probab=35.41 E-value=1.2e+02 Score=31.85 Aligned_cols=48 Identities=13% Similarity=0.218 Sum_probs=27.2
Q ss_pred CCCCeeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCE
Q 023530 125 IDPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPY 184 (281)
Q Consensus 125 ~~~~~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~ 184 (281)
..+++||+|++.|. |..+..-+.. .| .+|.+ .++. ...+.|++.|+..
T Consensus 49 ~~~~~kIgIIG~G~mG~slA~~L~~--~G---~~V~~--~dr~-----~~~~~A~~~Gv~~ 97 (667)
T PLN02712 49 NTTQLKIAIIGFGNYGQFLAKTLIS--QG---HTVLA--HSRS-----DHSLAARSLGVSF 97 (667)
T ss_pred cCCCCEEEEEccCHHHHHHHHHHHH--CC---CEEEE--EeCC-----HHHHHHHHcCCEE
Confidence 35678999999987 5444333322 24 35543 3331 1235688888743
No 395
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=35.34 E-value=2.2e+02 Score=23.84 Aligned_cols=56 Identities=18% Similarity=0.134 Sum_probs=33.2
Q ss_pred eEEEEeeCCh---hHHHHHHHhhhcCCCCeeEEEEEeCCCC---------------------CCChhHHHHHHhCCCCEE
Q 023530 130 KVAVLASKQE---HCLVDFLYGWQEGKLPVEITCVISNHDR---------------------GPNSHVIRFLERHGIPYH 185 (281)
Q Consensus 130 rIavl~Sg~G---snL~aLl~~~~~g~l~~eI~~Visn~pd---------------------~~~a~~~~~A~~~gIP~~ 185 (281)
|-+|...|.| .+.++|.-+.+.+ + .+..||-|+-- .+......+|+.+|++..
T Consensus 67 ~~vv~i~GDG~f~~~~~el~ta~~~~-l--pv~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~ 143 (172)
T cd02004 67 KRVVLVEGDGAFGFSGMELETAVRYN-L--PIVVVVGNNGGWYQGLDGQQLSYGLGLPVTTLLPDTRYDLVAEAFGGKGE 143 (172)
T ss_pred CeEEEEEcchhhcCCHHHHHHHHHcC-C--CEEEEEEECcccccchhhhhhhccCCCceeccCCCCCHHHHHHHCCCeEE
Confidence 5567778887 4556665544332 3 44445555310 012245678999999988
Q ss_pred EeC
Q 023530 186 YLC 188 (281)
Q Consensus 186 ~i~ 188 (281)
.++
T Consensus 144 ~v~ 146 (172)
T cd02004 144 LVT 146 (172)
T ss_pred EEC
Confidence 876
No 396
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=35.27 E-value=1.3e+02 Score=27.34 Aligned_cols=56 Identities=14% Similarity=0.210 Sum_probs=31.8
Q ss_pred eeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChH-HHHHHHHh-CCCEEEEeccc
Q 023530 156 VEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENERE-EELLELVQ-NTDFLVLARYM 214 (281)
Q Consensus 156 ~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e-~~l~~~L~-~~DlIVLAgYM 214 (281)
.+++..+|. |+ ........|.++|+|+..-+...+..+ ++|.+ .. ++-+++...|.
T Consensus 61 ~DvVid~t~-p~-~~~~~~~~al~~G~~vvigttG~s~~~~~~l~~-aa~~~~v~~s~n~s 118 (257)
T PRK00048 61 ADVLIDFTT-PE-ATLENLEFALEHGKPLVIGTTGFTEEQLAELEE-AAKKIPVVIAPNFS 118 (257)
T ss_pred CCEEEECCC-HH-HHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHH-HhcCCCEEEECcch
Confidence 355555553 22 123567788899999987543322222 23444 33 67777776664
No 397
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=35.16 E-value=1.1e+02 Score=30.40 Aligned_cols=100 Identities=19% Similarity=0.183 Sum_probs=54.6
Q ss_pred HHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCC-CeeEEEEEeCCCCCCChhHHHHHHhC
Q 023530 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKL-PVEITCVISNHDRGPNSHVIRFLERH 180 (281)
Q Consensus 102 L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l-~~eI~~Visn~pd~~~a~~~~~A~~~ 180 (281)
|...=-.+...+|... ++ --+++||+|+.||. .|++-- ..+ +.+|. =||. -.+..+.+++
T Consensus 155 L~p~~i~llas~Gi~~--V~---V~rkprV~IisTGd-----ELv~~~--~~l~~gqI~--dsN~-----~~l~a~l~~~ 215 (404)
T COG0303 155 LTPAEIALLASLGIAE--VK---VYRKPRVAIISTGD-----ELVEPG--QPLEPGQIY--DSNS-----YMLAALLERA 215 (404)
T ss_pred cCHHHHHHHHhCCCce--EE---EecCCEEEEEecCc-----cccCCC--CCCCCCeEE--ecCH-----HHHHHHHHHc
Confidence 3333334455666542 22 24578999999997 244421 111 13332 2333 2356678999
Q ss_pred CCCEEEeC-CCCCChHHHHHHHHh----CCCEEEEecccccCChhHH
Q 023530 181 GIPYHYLC-AKENEREEELLELVQ----NTDFLVLARYMQPVPLQKE 222 (281)
Q Consensus 181 gIP~~~i~-~k~~~~e~~l~~~L~----~~DlIVLAgYMrILs~~fl 222 (281)
|....... -++ +++++.+.++ ++|+||..|=--.=..+++
T Consensus 216 G~e~~~~giv~D--d~~~l~~~i~~a~~~~DviItsGG~SvG~~D~v 260 (404)
T COG0303 216 GGEVVDLGIVPD--DPEALREAIEKALSEADVIITSGGVSVGDADYV 260 (404)
T ss_pred CCceeeccccCC--CHHHHHHHHHHhhhcCCEEEEeCCccCcchHhH
Confidence 98666555 222 2344555554 7999999875444444443
No 398
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=34.88 E-value=3.5e+02 Score=25.99 Aligned_cols=76 Identities=16% Similarity=0.245 Sum_probs=47.4
Q ss_pred eEEEEeeCC--hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC-CCCCC---------hHHH
Q 023530 130 KVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENE---------REEE 197 (281)
Q Consensus 130 rIavl~Sg~--GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~-~k~~~---------~e~~ 197 (281)
||.|=+... -|-+..+++..+.. ..+|....-+. ....++++.+|+++.++- ...+. +..+
T Consensus 2 kIwiDi~~p~hvhfFk~~I~eL~~~--GheV~it~R~~-----~~~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~~R~~~ 74 (335)
T PF04007_consen 2 KIWIDITHPAHVHFFKNIIRELEKR--GHEVLITARDK-----DETEELLDLYGIDYIVIGKHGDSLYGKLLESIERQYK 74 (335)
T ss_pred eEEEECCCchHHHHHHHHHHHHHhC--CCEEEEEEecc-----chHHHHHHHcCCCeEEEcCCCCCHHHHHHHHHHHHHH
Confidence 455544433 37788888876653 24665444433 246889999999999987 33221 2234
Q ss_pred HHHHHh--CCCEEEEec
Q 023530 198 LLELVQ--NTDFLVLAR 212 (281)
Q Consensus 198 l~~~L~--~~DlIVLAg 212 (281)
+.+.++ +||+++-.+
T Consensus 75 l~~~~~~~~pDv~is~~ 91 (335)
T PF04007_consen 75 LLKLIKKFKPDVAISFG 91 (335)
T ss_pred HHHHHHhhCCCEEEecC
Confidence 566665 799998543
No 399
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=34.81 E-value=3.4e+02 Score=26.57 Aligned_cols=36 Identities=11% Similarity=0.135 Sum_probs=22.8
Q ss_pred CeeEEEEeeCChhHHHHHHHhhh-cCCCCeeEEEEEeCC
Q 023530 128 KYKVAVLASKQEHCLVDFLYGWQ-EGKLPVEITCVISNH 165 (281)
Q Consensus 128 ~~rIavl~Sg~GsnL~aLl~~~~-~g~l~~eI~~Visn~ 165 (281)
+.|++|.++|+. .+.+++.++ ......++++++.+.
T Consensus 125 ~rrvlIiGag~~--~~~l~~~l~~~~~~g~~vvGfidd~ 161 (456)
T TIGR03022 125 GRPAVIIGAGQN--AAILYRALQSNPQLGLRPLAVVDTD 161 (456)
T ss_pred CceEEEEeCCHH--HHHHHHHHhhCccCCcEEEEEEeCC
Confidence 457888888752 334455443 234457899999865
No 400
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=34.66 E-value=2.9e+02 Score=27.02 Aligned_cols=88 Identities=8% Similarity=0.125 Sum_probs=46.8
Q ss_pred CeeEEEEeeCChhHHHHHHHhhhc-CCCCeeEEEEEeCCCCCCC-----------hhHHHHHHhCCCCEEEeCCCCCChH
Q 023530 128 KYKVAVLASKQEHCLVDFLYGWQE-GKLPVEITCVISNHDRGPN-----------SHVIRFLERHGIPYHYLCAKENERE 195 (281)
Q Consensus 128 ~~rIavl~Sg~GsnL~aLl~~~~~-g~l~~eI~~Visn~pd~~~-----------a~~~~~A~~~gIP~~~i~~k~~~~e 195 (281)
..|+.|.++|. +.+.+++..++ ++...++++++.+.++... ....+.++++++....+.-...+.+
T Consensus 128 ~~rvLIiGag~--~~~~l~~~L~~~~~~g~~vvG~idd~~~~~~~~~gvpVlg~~~dl~~~i~~~~vd~ViIA~p~~~~~ 205 (451)
T TIGR03023 128 LRRVLIVGAGE--LGRRLAERLARNPELGYRVVGFFDDRPDARTGVRGVPVLGKLDDLEELIREGEVDEVYIALPLAAED 205 (451)
T ss_pred CCcEEEEeCCH--HHHHHHHHHHhCccCCcEEEEEEeCCCccccccCCCCccCCHHHHHHHHHhcCCCEEEEeeCcccHH
Confidence 45788888775 34455555543 3456789999886532110 1234556666766665541111111
Q ss_pred --HHHHHHHh--CCCEEEEecccccC
Q 023530 196 --EELLELVQ--NTDFLVLARYMQPV 217 (281)
Q Consensus 196 --~~l~~~L~--~~DlIVLAgYMrIL 217 (281)
+++++.++ .+++.++-....+.
T Consensus 206 ~~~~ll~~~~~~gv~V~vvP~~~e~~ 231 (451)
T TIGR03023 206 RILELLDALEDLTVDVRLVPDLFDFA 231 (451)
T ss_pred HHHHHHHHHHhcCCEEEEeCchhhhc
Confidence 23444444 56666665554443
No 401
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=34.62 E-value=1.7e+02 Score=24.60 Aligned_cols=89 Identities=17% Similarity=0.173 Sum_probs=45.4
Q ss_pred CCeeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC-CCC-------------
Q 023530 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKE------------- 191 (281)
Q Consensus 127 ~~~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~-~k~------------- 191 (281)
++.||+|++.|+ |.....++.. ++++++..=. ++ ..++..+..+--...++ .+.
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~-----lGa~v~~~d~-~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 87 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKG-----LGAEVVVPDE-RP-----ERLRQLESLGAYFIEVDYEDHLERKDFDKADYYE 87 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHH-----TT-EEEEEES-SH-----HHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhH-----CCCEEEeccC-CH-----HHHHhhhcccCceEEEcccccccccccchhhhhH
Confidence 467999999888 5666666664 2456553322 21 22344455544333332 110
Q ss_pred --CChHHHHHHHHhCCCEEEEec------ccccCChhHHhhhc
Q 023530 192 --NEREEELLELVQNTDFLVLAR------YMQPVPLQKEAYLG 226 (281)
Q Consensus 192 --~~~e~~l~~~L~~~DlIVLAg------YMrILs~~fl~~~~ 226 (281)
..++..+.+.++..|+|+.++ +=++++.+-++..+
T Consensus 88 ~~~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~ 130 (168)
T PF01262_consen 88 HPESYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMK 130 (168)
T ss_dssp HCCHHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSS
T ss_pred HHHHhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccC
Confidence 112345667777899999754 34666666666655
No 402
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=34.57 E-value=83 Score=31.05 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=15.2
Q ss_pred CCeeEEEEeeCChhHHHHHHHhhhc
Q 023530 127 PKYKVAVLASKQEHCLVDFLYGWQE 151 (281)
Q Consensus 127 ~~~rIavl~Sg~GsnL~aLl~~~~~ 151 (281)
++|||.|++||.-. .+|.++.++
T Consensus 3 ~~~kvLviG~g~re--hal~~~~~~ 25 (426)
T PRK13789 3 VKLKVLLIGSGGRE--SAIAFALRK 25 (426)
T ss_pred CCcEEEEECCCHHH--HHHHHHHHh
Confidence 45799999998752 345555544
No 403
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=34.45 E-value=3.6e+02 Score=26.63 Aligned_cols=75 Identities=20% Similarity=0.154 Sum_probs=44.8
Q ss_pred EEEEeeCCh-hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCC--hHHHHHHHHh-C--
Q 023530 131 VAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENE--REEELLELVQ-N-- 204 (281)
Q Consensus 131 Iavl~Sg~G-snL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~--~e~~l~~~L~-~-- 204 (281)
-+++.+|+| ..+++-+...-. +.+-++|+.|-. =.....++|+.+|.+++.+...-.+ +-+++.+.|+ +
T Consensus 57 ~~~ll~gsGt~amEAav~sl~~---pgdkVLv~~nG~--FG~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~ 131 (383)
T COG0075 57 DVVLLSGSGTLAMEAAVASLVE---PGDKVLVVVNGK--FGERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKDPD 131 (383)
T ss_pred cEEEEcCCcHHHHHHHHHhccC---CCCeEEEEeCCh--HHHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCC
Confidence 344444454 556665554322 246777888741 1234678899999999999832211 2357778888 4
Q ss_pred CCEEEE
Q 023530 205 TDFLVL 210 (281)
Q Consensus 205 ~DlIVL 210 (281)
++.|.+
T Consensus 132 ~~~V~~ 137 (383)
T COG0075 132 IKAVAV 137 (383)
T ss_pred ccEEEE
Confidence 555554
No 404
>PRK10867 signal recognition particle protein; Provisional
Probab=34.43 E-value=4.8e+02 Score=26.03 Aligned_cols=127 Identities=10% Similarity=0.026 Sum_probs=62.6
Q ss_pred chHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCC-HHHHHHHHH-HHhhhhcccceeeeecCCCCCeeE
Q 023530 54 GIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWP-REQMDEDFF-KLSKMFNAMRSVVRVPDIDPKYKV 131 (281)
Q Consensus 54 GIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~-~~~L~~~L~-~la~~l~l~~~~~~~~~~~~~~rI 131 (281)
-.+.++-..|-+.++|..-....++.-..... .-.++. ..+ .+.+.+.+. ++.+-++-....+. ....++++
T Consensus 29 ~~l~ei~~~Ll~aDV~~~~~~~~~~~v~~~~~---~~~~~~-~~~~~~~~~~~v~~el~~~l~~~~~~~~--~~~~~p~v 102 (433)
T PRK10867 29 EALREVRLALLEADVNLPVVKDFIARVKEKAV---GQEVLK-SLTPGQQVIKIVNDELVEILGGENSELN--LAAKPPTV 102 (433)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHh---hccccc-cCCcHHHHHHHHHHHHHHHhCCCcceee--ecCCCCEE
Confidence 45788999999999988776665531100000 001111 122 233444443 33444432211222 23344566
Q ss_pred EEEeeCCh----hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCCh--hHHHHHHhCCCCEEEeC
Q 023530 132 AVLASKQE----HCLVDFLYGWQEGKLPVEITCVISNHDRGPNS--HVIRFLERHGIPYHYLC 188 (281)
Q Consensus 132 avl~Sg~G----snL~aLl~~~~~g~l~~eI~~Visn~pd~~~a--~~~~~A~~~gIP~~~i~ 188 (281)
.+|+...| +....|..+.... -...|..|-++ +-++.+ ....+|+..|||++..+
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~-~G~kV~lV~~D-~~R~aa~eQL~~~a~~~gv~v~~~~ 163 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKK-KKKKVLLVAAD-VYRPAAIEQLKTLGEQIGVPVFPSG 163 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHh-cCCcEEEEEcc-ccchHHHHHHHHHHhhcCCeEEecC
Confidence 66665555 4444454433221 01356666665 333322 23457899999988754
No 405
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=34.41 E-value=2.1e+02 Score=27.07 Aligned_cols=63 Identities=17% Similarity=0.300 Sum_probs=31.7
Q ss_pred hhHHHHHHHhhhcCCCCeeEEEEEe-CCCCCCChh-HHHHHHhCCCCEEEeCCCCCChHHHHHHHHh--CCCEEEE
Q 023530 139 EHCLVDFLYGWQEGKLPVEITCVIS-NHDRGPNSH-VIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVL 210 (281)
Q Consensus 139 GsnL~aLl~~~~~g~l~~eI~~Vis-n~pd~~~a~-~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~--~~DlIVL 210 (281)
++.+.-|..+.+.|. ... .+++ .+|....+. ....-.+.|||+.++. +..+.-.++ ++|.|++
T Consensus 137 ~tv~~~l~~A~~~g~-~~~--V~v~EsrP~~~G~~~~a~~L~~~gI~vtlI~------Dsa~~~~m~~~~vd~Vlv 203 (303)
T TIGR00524 137 GTALGVIRSAWEDGK-RIR--VIACETRPRNQGSRLTAWELMQDGIDVTLIT------DSMAAYFMQKGEIDAVIV 203 (303)
T ss_pred chHHHHHHHHHHcCC-ceE--EEECCCCCccchHHHHHHHHHHCCCCEEEEC------hhHHHHHccccCCCEEEE
Confidence 445555555655664 233 3344 244322211 1233346799999986 223444444 5666665
No 406
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=34.27 E-value=3.6e+02 Score=24.48 Aligned_cols=100 Identities=15% Similarity=0.141 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCCh---hHHHHHHHhhhc--CCCCeeEEEEEeCCCCCCCh
Q 023530 97 WPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE---HCLVDFLYGWQE--GKLPVEITCVISNHDRGPNS 171 (281)
Q Consensus 97 ~~~~~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~G---snL~aLl~~~~~--g~l~~eI~~Visn~pd~~~a 171 (281)
.+.+.++++.++.++..--. ...-.+|+++.+|.. +....+++.++. ...+.+|+-=||
T Consensus 69 ~~~~~~~~~~~~~~~~i~~~--------~~~g~~v~~l~~GDp~~ys~~~~l~~~l~~~~~~~~veivPGIs-------- 132 (238)
T PRK05948 69 QDEEQLEQAWQAAADQVWHY--------LEQGEDVAFACEGDVSFYSTFTYLAQTLQELYPQVAIQTIPGVC-------- 132 (238)
T ss_pred CChHHHHHHHHHHHHHHHHH--------HHcCCeEEEEeCCChHHHHHHHHHHHHHHhcCCCCCEEEECChh--------
Confidence 34566666666665543211 122357999999984 444555555544 233455443333
Q ss_pred hHHHHHHhCCCCEEEeCCC-----CCChHHHHHHHHhCCCEEEEec
Q 023530 172 HVIRFLERHGIPYHYLCAK-----ENEREEELLELVQNTDFLVLAR 212 (281)
Q Consensus 172 ~~~~~A~~~gIP~~~i~~k-----~~~~e~~l~~~L~~~DlIVLAg 212 (281)
.+...|...|+|...-+.. .....+.+.+.++..|.+|+.+
T Consensus 133 s~~a~aa~~g~pL~~~~e~l~ii~~~~~~~~l~~~l~~~~~vVlmk 178 (238)
T PRK05948 133 SPLAAAAALGIPLTLGSQRLAILPALYHLEELEQALTWADVVVLMK 178 (238)
T ss_pred HHHHHHHHhCCCeecCCCeEEEEcCCCCHHHHHHHHhCCCEEEEEE
Confidence 3466788899997642210 0112234555666778888655
No 407
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=34.24 E-value=2e+02 Score=28.90 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=31.2
Q ss_pred ccEEEEEEcC---CCcchHHHHHHHHHhCCCeEeEeee
Q 023530 41 THGIHVFHCP---DEVGIVAKLSECIASRGGNILAADV 75 (281)
Q Consensus 41 ~~~iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q 75 (281)
.-..++++|. ..||+.+++.+.|++.++||.-.++
T Consensus 382 ~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~iss 419 (447)
T COG0527 382 GLALVSIVGAGMRSNPGVAARIFQALAEENINIIMISS 419 (447)
T ss_pred CeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEEc
Confidence 5578999997 5689999999999999999999984
No 408
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=34.02 E-value=2.2e+02 Score=26.23 Aligned_cols=48 Identities=13% Similarity=0.205 Sum_probs=27.0
Q ss_pred hHHHHHHHhhhcCCCCeeEEEEEeCCCCCC-ChhHHHHHHhCCCCEEEeC
Q 023530 140 HCLVDFLYGWQEGKLPVEITCVISNHDRGP-NSHVIRFLERHGIPYHYLC 188 (281)
Q Consensus 140 snL~aLl~~~~~g~l~~eI~~Visn~pd~~-~a~~~~~A~~~gIP~~~i~ 188 (281)
.|.++-....- .+.+.+.+..||-+|..| +..+++.-++.++|+.++.
T Consensus 46 e~veaav~~~~-e~~~pDfvi~isPNpaaPGP~kARE~l~~s~~Paiiig 94 (277)
T COG1927 46 ECVEAAVTEML-EEFNPDFVIYISPNPAAPGPKKAREILSDSDVPAIIIG 94 (277)
T ss_pred HHHHHHHHHHH-HhcCCCEEEEeCCCCCCCCchHHHHHHhhcCCCEEEec
Confidence 56655443322 223446666777553322 1345666667788888887
No 409
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=33.82 E-value=1e+02 Score=29.65 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=22.0
Q ss_pred CeeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCC
Q 023530 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNH 165 (281)
Q Consensus 128 ~~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~ 165 (281)
+.||+|.+.|+ |......+.. .. ..++++|++.+
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~--~p--d~ELVgV~dr~ 37 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQ--QP--DMELVGVFSRR 37 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHh--CC--CcEEEEEEcCC
Confidence 57999999998 5432222221 22 36999998865
No 410
>PLN02591 tryptophan synthase
Probab=33.71 E-value=1.7e+02 Score=26.99 Aligned_cols=188 Identities=8% Similarity=0.053 Sum_probs=100.6
Q ss_pred cchHHHHHHHHHhCCCeEeEeeeec-cC-CCCeEEEEEEEE-eCCCCCCHHHHHHHHHHHhhhhcccceeeeecCCCCCe
Q 023530 53 VGIVAKLSECIASRGGNILAADVFV-PE-KKNVFYSRSEFI-FDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKY 129 (281)
Q Consensus 53 pGIVa~VS~~La~~giNI~dl~q~~-~~-~~g~F~mrlev~-~p~~~~~~~~L~~~L~~la~~l~l~~~~~~~~~~~~~~ 129 (281)
..--.++...|.+.|++++|+--=. || .+|--.++.... +.. +++.+++-+.++++. .....
T Consensus 15 ~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~-G~~~~~~~~~~~~~r--------------~~~~~ 79 (250)
T PLN02591 15 LDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEK-GTTLDSVISMLKEVA--------------PQLSC 79 (250)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHc-CCCHHHHHHHHHHHh--------------cCCCC
Confidence 3445677888999999999986422 22 122111100000 111 222222222222211 11223
Q ss_pred eEEEEeeCCh---hHHHHHHHhhhcCCCCeeEEEEEeCCCCCC---ChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHh
Q 023530 130 KVAVLASKQE---HCLVDFLYGWQEGKLPVEITCVISNHDRGP---NSHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (281)
Q Consensus 130 rIavl~Sg~G---snL~aLl~~~~~g~l~~eI~~Visn~pd~~---~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~ 203 (281)
.+++|..-+- ..++++++.+++- -+.+||- ||+| .....+.|+++||....+=... ..++++.++.+
T Consensus 80 p~ilm~Y~N~i~~~G~~~F~~~~~~a----Gv~Gvii--pDLP~ee~~~~~~~~~~~gl~~I~lv~Pt-t~~~ri~~ia~ 152 (250)
T PLN02591 80 PIVLFTYYNPILKRGIDKFMATIKEA----GVHGLVV--PDLPLEETEALRAEAAKNGIELVLLTTPT-TPTERMKAIAE 152 (250)
T ss_pred CEEEEecccHHHHhHHHHHHHHHHHc----CCCEEEe--CCCCHHHHHHHHHHHHHcCCeEEEEeCCC-CCHHHHHHHHH
Confidence 5678888773 3667777766542 3666777 5655 2467889999999876654222 22446666666
Q ss_pred -CCCEEEEecccccC------Chh---HHhhhcCCceeccCCCCCCCCCC-CCchhHHHHhcCCCcceeeeee
Q 023530 204 -NTDFLVLARYMQPV------PLQ---KEAYLGYKLLESLSSKGSLTSYF-NMHMPKHMILTDKGCLCSTRIS 265 (281)
Q Consensus 204 -~~DlIVLAgYMrIL------s~~---fl~~~~~riINSLLP~f~G~g~~-g~~vh~a~l~~d~g~~~~~~~~ 265 (281)
..++|=+.+-+=+- ++. ++++-+. . +=+|-+-|.|-- ..++.+..-.|-.|+.+.+.++
T Consensus 153 ~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~-~--~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalV 222 (250)
T PLN02591 153 ASEGFVYLVSSTGVTGARASVSGRVESLLQELKE-V--TDKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMV 222 (250)
T ss_pred hCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHh-c--CCCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHH
Confidence 77888776555332 222 2222222 1 346777776543 2355555555678888876554
No 411
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=33.57 E-value=4.7e+02 Score=25.66 Aligned_cols=95 Identities=14% Similarity=0.138 Sum_probs=0.0
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccceeeeec
Q 023530 44 IHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVP 123 (281)
Q Consensus 44 iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~~~~~~~ 123 (281)
.+.|.|. +..+..++++|.+.|..++-+.+ +.....+++.+++...+.+.+
T Consensus 302 rv~v~g~--~~~~~~l~~~L~elG~~~~~v~~--------------------~~~~~~~~~~l~~~~~~~~~~------- 352 (429)
T cd03466 302 KAAIYGE--PDFVVAITRFVLENGMVPVLIAT--------------------GSESKKLKEKLEEDLKEYVEK------- 352 (429)
T ss_pred EEEEEcC--HHHHHHHHHHHHHCCCEEEEEEe--------------------CCCChHHHHHHHHHHHhcCCc-------
Q ss_pred CCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEe
Q 023530 124 DIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYL 187 (281)
Q Consensus 124 ~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i 187 (281)
+.|...+...-+++++++ .+.-++|+|. ....+|++.|||+..+
T Consensus 353 -------~~v~~~~d~~e~~~~l~~-------~~~dliiG~s------~~~~~a~~~~ip~~~~ 396 (429)
T cd03466 353 -------CVILDGADFFDIESYAKE-------LKIDVLIGNS------YGRRIAEKLGIPLIRI 396 (429)
T ss_pred -------eEEEeCCCHHHHHHHHHh-------cCCCEEEECc------hhHHHHHHcCCCEEEe
No 412
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=33.41 E-value=2.5e+02 Score=26.33 Aligned_cols=67 Identities=12% Similarity=0.249 Sum_probs=35.4
Q ss_pred EEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHH---HhCCCCEEEeCCCCCChHHHHHHHHhCCCEE
Q 023530 133 VLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFL---ERHGIPYHYLCAKENEREEELLELVQNTDFL 208 (281)
Q Consensus 133 vl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A---~~~gIP~~~i~~k~~~~e~~l~~~L~~~DlI 208 (281)
||.-++ |+.+..|..+.++|. ..+|. ++ +.+|...+..+| .+.|||+..+... .+--.++++|.|
T Consensus 113 ILTh~~S~tv~~~l~~A~~~gk-~~~V~--v~--EsrP~~qG~~la~eL~~~GI~vtlI~Ds------a~~~~m~~vd~V 181 (275)
T PRK08335 113 IITHSFSSAVLEILKTAKRKGK-RFKVI--LT--ESAPDYEGLALANELEFLGIEFEVITDA------QLGLFAKEATLA 181 (275)
T ss_pred EEEECCcHHHHHHHHHHHHcCC-ceEEE--Ee--cCCCchhHHHHHHHHHHCCCCEEEEecc------HHHHHHHhCCEE
Confidence 444443 566666666666664 23333 22 333444444444 3469999998621 222333456666
Q ss_pred EE
Q 023530 209 VL 210 (281)
Q Consensus 209 VL 210 (281)
++
T Consensus 182 iv 183 (275)
T PRK08335 182 LV 183 (275)
T ss_pred EE
Confidence 65
No 413
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=33.37 E-value=1.4e+02 Score=28.32 Aligned_cols=10 Identities=20% Similarity=0.248 Sum_probs=8.9
Q ss_pred eeEEEEeeCC
Q 023530 129 YKVAVLASKQ 138 (281)
Q Consensus 129 ~rIavl~Sg~ 138 (281)
+||+|++.|+
T Consensus 4 kkIgiIG~G~ 13 (314)
T TIGR00465 4 KTVAIIGYGS 13 (314)
T ss_pred CEEEEEeEcH
Confidence 5799999997
No 414
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=33.27 E-value=1.6e+02 Score=24.05 Aligned_cols=57 Identities=12% Similarity=0.035 Sum_probs=33.6
Q ss_pred eeEEEEeeCChh---HHHHHHHhhhcCCCCeeEEEEEeCCCCC--------------------CChhHHHHHHhCCCCEE
Q 023530 129 YKVAVLASKQEH---CLVDFLYGWQEGKLPVEITCVISNHDRG--------------------PNSHVIRFLERHGIPYH 185 (281)
Q Consensus 129 ~rIavl~Sg~Gs---nL~aLl~~~~~g~l~~eI~~Visn~pd~--------------------~~a~~~~~A~~~gIP~~ 185 (281)
.+.+|...|.|+ ++++|.-+.+.+ ..+..||-|+.-. +......+|+.+|+++.
T Consensus 64 ~~~vv~~~GDG~~~~~~~~l~ta~~~~---~~~~~iv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~ 140 (168)
T cd00568 64 DRPVVCIAGDGGFMMTGQELATAVRYG---LPVIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDFAALAEAYGAKGV 140 (168)
T ss_pred CCcEEEEEcCcHHhccHHHHHHHHHcC---CCcEEEEEECCccHHHHHHHHHHcCCCcccccCCCCCHHHHHHHCCCeEE
Confidence 356677778774 456665544433 3566666665210 11235667888898888
Q ss_pred EeC
Q 023530 186 YLC 188 (281)
Q Consensus 186 ~i~ 188 (281)
.++
T Consensus 141 ~v~ 143 (168)
T cd00568 141 RVE 143 (168)
T ss_pred EEC
Confidence 775
No 415
>PRK07680 late competence protein ComER; Validated
Probab=33.16 E-value=1.4e+02 Score=27.11 Aligned_cols=14 Identities=7% Similarity=0.252 Sum_probs=10.2
Q ss_pred eeEEEEeeCC-hhHH
Q 023530 129 YKVAVLASKQ-EHCL 142 (281)
Q Consensus 129 ~rIavl~Sg~-GsnL 142 (281)
+||+|++.|. |+.+
T Consensus 1 m~I~iIG~G~mG~al 15 (273)
T PRK07680 1 MNIGFIGTGNMGTIL 15 (273)
T ss_pred CEEEEECccHHHHHH
Confidence 4799999887 5443
No 416
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=33.00 E-value=99 Score=27.14 Aligned_cols=120 Identities=12% Similarity=0.027 Sum_probs=64.2
Q ss_pred CCeeEEEEeeCChhHHHHHHHhhhcCC-C-----------------------CeeEEEEEeCCCCCCChhHHHHHHhCCC
Q 023530 127 PKYKVAVLASKQEHCLVDFLYGWQEGK-L-----------------------PVEITCVISNHDRGPNSHVIRFLERHGI 182 (281)
Q Consensus 127 ~~~rIavl~Sg~GsnL~aLl~~~~~g~-l-----------------------~~eI~~Visn~pd~~~a~~~~~A~~~gI 182 (281)
.+.++++|..|+-.+|.++++++++.. . ...+-+|||.+ ...+++|++.|+
T Consensus 18 s~~~~vfLl~g~I~~l~~~v~~~~~~gK~vfVHiDli~Gl~~D~~~i~~L~~~~~~dGIISTk-----~~~i~~Ak~~gl 92 (175)
T PF04309_consen 18 SDVEVVFLLTGDIGNLKDIVKRLKAAGKKVFVHIDLIEGLSRDEAGIEYLKEYGKPDGIISTK-----SNLIKRAKKLGL 92 (175)
T ss_dssp SSSSEEEE-SEECCCHHHHHHHHHHTT-EEEEECCGEETB-SSHHHHHHHHHTT--SEEEESS-----HHHHHHHHHTT-
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHHcCCEEEEEehhcCCCCCCHHHHHHHHHcCCCcEEEeCC-----HHHHHHHHHcCC
Confidence 356889999988889999888766421 1 13356777766 357899999998
Q ss_pred CEEEeCCCC--CCh-HHHHHHHHh--CCCEEE-EecccccCChhHHhhhcCCceeccCCCCCCCCCCC--CchhHHHHhc
Q 023530 183 PYHYLCAKE--NER-EEELLELVQ--NTDFLV-LARYMQPVPLQKEAYLGYKLLESLSSKGSLTSYFN--MHMPKHMILT 254 (281)
Q Consensus 183 P~~~i~~k~--~~~-e~~l~~~L~--~~DlIV-LAgYMrILs~~fl~~~~~riINSLLP~f~G~g~~g--~~vh~a~l~~ 254 (281)
.+.+ +=+ ++. =+.-++.++ +||.|= |=|+| |++++.+...+ + .|-..| |+.- ..|.+++-+|
T Consensus 93 ~tIq--RiFliDS~al~~~~~~i~~~~PD~vEilPg~~----p~vi~~i~~~~-~--~PiIAG-GLI~~~e~v~~al~aG 162 (175)
T PF04309_consen 93 LTIQ--RIFLIDSSALETGIKQIEQSKPDAVEILPGVM----PKVIKKIREET-N--IPIIAG-GLIRTKEDVEEALKAG 162 (175)
T ss_dssp EEEE--EEE-SSHHHHHHHHHHHHHHT-SEEEEESCCH----HHHHCCCCCCC-S--S-EEEE-SS--SHHHHHHHCCTT
T ss_pred EEEE--EeeeecHHHHHHHHHHHhhcCCCEEEEchHHH----HHHHHHHHHhc-C--CCEEee-cccCCHHHHHHHHHcC
Confidence 8655 111 111 123445555 899984 44422 35666655432 2 555555 2211 1444555455
Q ss_pred CCCccee
Q 023530 255 DKGCLCS 261 (281)
Q Consensus 255 d~g~~~~ 261 (281)
..|..+|
T Consensus 163 a~aVSTS 169 (175)
T PF04309_consen 163 ADAVSTS 169 (175)
T ss_dssp CEEEEE-
T ss_pred CEEEEcC
Confidence 5554444
No 417
>TIGR02706 P_butyryltrans phosphate butyryltransferase. Members of this family are phosphate butyryltransferase, also called phosphotransbutyrylase. In general, this enzyme is found in butyrate-producing anaerobic bacteria, encoded next to the gene for butyrate kinase. Together, these two enzymes represent what may be the less common of two pathways for butyrate production from butyryl-CoA. The alternative is transfer of the CoA group to acetate by butyryl-CoA:acetate CoA transferase. Cutoffs for this model are set such that the homolog from Thermotoga maritima, whose activity on butyryl-CoA is only 30 % of its activity with acetyl-CoA, scores in the zone between trusted and noice cutoffs.
Probab=32.91 E-value=2.9e+02 Score=25.81 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=47.6
Q ss_pred CCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCC---EEEeCCCCCChH--HHHHHH
Q 023530 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP---YHYLCAKENERE--EELLEL 201 (281)
Q Consensus 127 ~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP---~~~i~~k~~~~e--~~l~~~ 201 (281)
.++||+|-.....+.|++.....+.|. +++.+ +.|. ....+.++++|+. +.+++... ..+ ..-+++
T Consensus 12 ~~~ri~~~~~~d~~vl~A~~~~~~~~~--~~~iL-vG~~-----~~I~~~~~~~~l~~~~ieIi~~~~-~~~s~~~a~~l 82 (294)
T TIGR02706 12 PMKTVAVAVAQDEPVLEAVKEAKEHGI--ARAIL-VGDE-----EKINEIAKKIGMNLDDVEIVNAPS-PKKAALLAVRL 82 (294)
T ss_pred CCCeEEEeCCCCHHHHHHHHHHHHCCC--ceEEE-ECCH-----HHHHHHHHHcCCCccCcEEECCCC-cHHHHHHHHHH
Confidence 356899888666788888877666553 45554 4553 2456778888763 33444221 111 123456
Q ss_pred Hh--CCCEEEEec
Q 023530 202 VQ--NTDFLVLAR 212 (281)
Q Consensus 202 L~--~~DlIVLAg 212 (281)
++ ++|.+|-+|
T Consensus 83 v~~G~aD~~vsg~ 95 (294)
T TIGR02706 83 VSTGKADMLMKGL 95 (294)
T ss_pred HHCCCCCEEEeCC
Confidence 66 899999887
No 418
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=32.73 E-value=1.7e+02 Score=29.16 Aligned_cols=79 Identities=19% Similarity=0.172 Sum_probs=51.8
Q ss_pred CeeEEEEeeCChh--HHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHhCC
Q 023530 128 KYKVAVLASKQEH--CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (281)
Q Consensus 128 ~~rIavl~Sg~Gs--nL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~~~ 205 (281)
.+|+.|++-|.=. ....|..+ | . =...|.|+ .-..+.++|+++|..+..+ +++.+.|.+.
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~---g---~-~~i~IaNR---T~erA~~La~~~~~~~~~l--------~el~~~l~~~ 239 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEK---G---V-KKITIANR---TLERAEELAKKLGAEAVAL--------EELLEALAEA 239 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHhC---C---C-CEEEEEcC---CHHHHHHHHHHhCCeeecH--------HHHHHhhhhC
Confidence 4578888887632 22333332 3 1 23367888 4567888999999433332 2566777799
Q ss_pred CEEEEe--cccccCChhHHhh
Q 023530 206 DFLVLA--RYMQPVPLQKEAY 224 (281)
Q Consensus 206 DlIVLA--gYMrILs~~fl~~ 224 (281)
|+|+.| ...-|++..-+..
T Consensus 240 DvVissTsa~~~ii~~~~ve~ 260 (414)
T COG0373 240 DVVISSTSAPHPIITREMVER 260 (414)
T ss_pred CEEEEecCCCccccCHHHHHH
Confidence 999998 8888888776644
No 419
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=32.68 E-value=1.2e+02 Score=30.05 Aligned_cols=56 Identities=13% Similarity=0.158 Sum_probs=34.2
Q ss_pred CeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC-CCCCChHHHHHHHHh-CCCEEEE
Q 023530 155 PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENEREEELLELVQ-NTDFLVL 210 (281)
Q Consensus 155 ~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~-~k~~~~e~~l~~~L~-~~DlIVL 210 (281)
.++|.+.-||.=...|-.+..+|++.|||++-.. ....++-..+.++|+ .||+|+=
T Consensus 69 GAeV~~a~cNplSTqD~vaaAl~~~~GipVfA~kGe~~eeY~~~~~~vl~~~p~iiiD 126 (420)
T COG0499 69 GAEVRWASCNPLSTQDDVAAALAAKEGIPVFAWKGETLEEYYEAIDQVLDWEPNIIID 126 (420)
T ss_pred CceEEEecCCCCcccHHHHHHHhhccCceEEEEcCCCHHHHHHHHHHHhCcCCCEEEe
Confidence 4899998888411123346667788899999974 111112234556666 6776663
No 420
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=32.58 E-value=2.2e+02 Score=25.92 Aligned_cols=58 Identities=22% Similarity=0.187 Sum_probs=37.5
Q ss_pred eeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCC---hhHHHHHHhCCCCEEEeC
Q 023530 129 YKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPN---SHVIRFLERHGIPYHYLC 188 (281)
Q Consensus 129 ~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~---a~~~~~A~~~gIP~~~i~ 188 (281)
+++++-.||+ +|.+-+.+-.-.-| +-++.+|+......++ ..+.+.|+++||++..++
T Consensus 19 ~~vVvglSGGiDSav~A~La~~Alg--~~~v~~v~mp~~~~~~~~~~~A~~la~~lgi~~~~i~ 80 (242)
T PF02540_consen 19 KGVVVGLSGGIDSAVVAALAVKALG--PDNVLAVIMPSGFSSEEDIEDAKELAEKLGIEYIVID 80 (242)
T ss_dssp SEEEEEETSSHHHHHHHHHHHHHHG--GGEEEEEEEESSTSTHHHHHHHHHHHHHHTSEEEEEE
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhh--hccccccccccccCChHHHHHHHHHHHHhCCCeeccc
Confidence 4799999998 36665554432223 1367777664221111 257889999999999987
No 421
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=32.38 E-value=1.2e+02 Score=27.79 Aligned_cols=20 Identities=30% Similarity=0.282 Sum_probs=14.6
Q ss_pred CeeEEEEeeCC-hhHHHHHHH
Q 023530 128 KYKVAVLASKQ-EHCLVDFLY 147 (281)
Q Consensus 128 ~~rIavl~Sg~-GsnL~aLl~ 147 (281)
|+||+|++.|. |+.+-..+.
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~ 21 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLA 21 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHH
Confidence 46899999998 666555444
No 422
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=31.89 E-value=64 Score=33.73 Aligned_cols=92 Identities=10% Similarity=0.038 Sum_probs=48.7
Q ss_pred ChhHHHHHHHhhhcCCC-CeeEEEEEeCCCCCCCh-hHHH-HHHhCCCCEEEeCCCC------C--Ch----HHHHHHHH
Q 023530 138 QEHCLVDFLYGWQEGKL-PVEITCVISNHDRGPNS-HVIR-FLERHGIPYHYLCAKE------N--ER----EEELLELV 202 (281)
Q Consensus 138 ~GsnL~aLl~~~~~g~l-~~eI~~Visn~pd~~~a-~~~~-~A~~~gIP~~~i~~k~------~--~~----e~~l~~~L 202 (281)
.||++++|.++++.-.- .....+|+++..-.... +... -.+.||.|-+.++... . ++ .+++.++.
T Consensus 254 dGhd~~~l~~al~~ak~~~~~P~~I~~~T~kGkG~~~~e~~~~~~Hg~~~f~~~~~~~~~~~~~~~~~~~~f~~~L~~la 333 (641)
T PRK12571 254 DGHDMEALLSVLRAARARADGPVLVHVVTEKGRGYAPAEADEDKYHAVGKFDVVTGLQKKSAPSAPSYTSVFGEELTKEA 333 (641)
T ss_pred CCCCHHHHHHHHHHHHhCCCCCEEEEEEecCccCcchhhcCCCcccCCCCcCCCCCcccCCCccchhHHHHHHHHHHHHH
Confidence 78999999887654211 11234444432111121 1222 1234666643333110 0 11 13455555
Q ss_pred h-CCCEEEE----ecccccCChhHHhhhcCCcee
Q 023530 203 Q-NTDFLVL----ARYMQPVPLQKEAYLGYKLLE 231 (281)
Q Consensus 203 ~-~~DlIVL----AgYMrILs~~fl~~~~~riIN 231 (281)
+ +++++++ ++.... ..|-+.|+.|.+|
T Consensus 334 ~~d~~iv~isadl~~~~~~--~~f~~~~p~R~id 365 (641)
T PRK12571 334 AEDSDIVAITAAMPLGTGL--DKLQKRFPNRVFD 365 (641)
T ss_pred hhCCCEEEEeCCccCCCCh--HHHHHhCCCcccc
Confidence 5 8999988 333322 7788999999999
No 423
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=31.84 E-value=1.4e+02 Score=28.07 Aligned_cols=34 Identities=12% Similarity=-0.020 Sum_probs=22.3
Q ss_pred CCCCcccEEEEEEcCCCcchHHHHHHHHHh-CCCe
Q 023530 36 VSPTLTHGIHVFHCPDEVGIVAKLSECIAS-RGGN 69 (281)
Q Consensus 36 ~~~~~~~~iltV~G~DrpGIVa~VS~~La~-~giN 69 (281)
.-+++++.-+-+.+.+-.-.+..+.++|++ .|.+
T Consensus 44 iLsTCNR~EiY~~~~~~~~~~~~~~~~l~~~~~~~ 78 (311)
T cd05213 44 LLSTCNRVELYLVGDNFHKLADELEELLAELLNEP 78 (311)
T ss_pred EEecCCeEEEEEEeCCcchhHHHHHHHHHHhcCch
Confidence 456788887777777644446677778765 3443
No 424
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=31.80 E-value=2.3e+02 Score=25.90 Aligned_cols=73 Identities=14% Similarity=0.157 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCC-ChhHHH
Q 023530 99 REQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGP-NSHVIR 175 (281)
Q Consensus 99 ~~~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~-~a~~~~ 175 (281)
...+++.+++.+++++..+... ..+. ... .-++.+-+.+.++ +-+++.+.+|.+ -.++++
T Consensus 48 ~~~~~~g~~~~a~~~g~~~~~~-~~~~-----------~~d~~~Q~~~i~~~ia~~-----~daIiv~~~d~~~~~~~v~ 110 (322)
T COG1879 48 FQAVRKGAEAAAKKLGVVVAVV-IADA-----------QNDVAKQIAQIEDLIAQG-----VDAIIINPVDPDALTPAVK 110 (322)
T ss_pred HHHHHHHHHHHHHHcCCcEEEE-eccc-----------ccChHHHHHHHHHHHHcC-----CCEEEEcCCChhhhHHHHH
Confidence 4668888888888888521111 1111 111 1222222323233 444555543311 247899
Q ss_pred HHHhCCCCEEEeC
Q 023530 176 FLERHGIPYHYLC 188 (281)
Q Consensus 176 ~A~~~gIP~~~i~ 188 (281)
+|.+.|||+..++
T Consensus 111 ~a~~aGIpVv~~d 123 (322)
T COG1879 111 KAKAAGIPVVTVD 123 (322)
T ss_pred HHHHCCCcEEEEe
Confidence 9999999999998
No 425
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=31.63 E-value=2.5e+02 Score=22.15 Aligned_cols=67 Identities=12% Similarity=0.024 Sum_probs=45.4
Q ss_pred ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeec-cCCCCeEE-EEEEEEeCCCCCCHHHHHHHHHHHhh
Q 023530 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFV-PEKKNVFY-SRSEFIFDPIKWPREQMDEDFFKLSK 111 (281)
Q Consensus 41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~-~~~~g~F~-mrlev~~p~~~~~~~~L~~~L~~la~ 111 (281)
-.|.+.|+|.-+|++...|-+.+..++-.-..=+... .+..|.|. .++.+.. .+.++++..-+++.+
T Consensus 14 c~F~~KVmG~a~~~l~~~vv~vvqr~ap~~~~~~~~~k~SSkGnY~svsI~i~A----~~~EQ~e~ly~eL~~ 82 (90)
T COG2921 14 CTFTYKVMGAAGPELEDQVVEVVQRHAPGDYTPRVSWKPSSKGNYLSVSITIRA----TNIEQVEALYRELRK 82 (90)
T ss_pred ccceeeehcccchhHHHHHHHHHHHHCCcccCceeeeccCCCCceEEEEEEEEE----CCHHHHHHHHHHHhh
Confidence 3488999999999999999999999876544433322 23467775 3444443 356776666666553
No 426
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=31.55 E-value=1.1e+02 Score=23.06 Aligned_cols=38 Identities=26% Similarity=0.202 Sum_probs=24.5
Q ss_pred HHHHhhhcCCCCeeEEEEEeCCC--CC---C-ChhHHHHHHhCCCCEE
Q 023530 144 DFLYGWQEGKLPVEITCVISNHD--RG---P-NSHVIRFLERHGIPYH 185 (281)
Q Consensus 144 aLl~~~~~g~l~~eI~~Visn~p--d~---~-~a~~~~~A~~~gIP~~ 185 (281)
++++.++.| +|.+||.+.. +. . ....+..|.+++||+.
T Consensus 46 ~i~~~i~~g----~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 46 AILDLIKNG----EIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHHHHhcCC----CeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 466766666 5777777621 10 1 2356778999999975
No 427
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=31.52 E-value=2e+02 Score=31.16 Aligned_cols=36 Identities=17% Similarity=0.052 Sum_probs=30.6
Q ss_pred cEEEEEEcC---CCcchHHHHHHHHHhCCCeEeEeeeec
Q 023530 42 HGIHVFHCP---DEVGIVAKLSECIASRGGNILAADVFV 77 (281)
Q Consensus 42 ~~iltV~G~---DrpGIVa~VS~~La~~giNI~dl~q~~ 77 (281)
-..+++.|. +.+|+.++|-+.|+++|+|+.-+.|..
T Consensus 317 v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~ 355 (810)
T PRK09466 317 VCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHP 355 (810)
T ss_pred EEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecC
Confidence 357788876 788999999999999999999997753
No 428
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=31.50 E-value=2e+02 Score=26.31 Aligned_cols=114 Identities=14% Similarity=0.150 Sum_probs=62.9
Q ss_pred HHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEE------EeCCCCCCC-hhH
Q 023530 102 MDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCV------ISNHDRGPN-SHV 173 (281)
Q Consensus 102 L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~V------isn~pd~~~-a~~ 173 (281)
+...+++.++.++.+ +-+-+|++|=+.|+ |.++-..+.. .| +.|++| |.| |+.-+ ..+
T Consensus 14 V~~~~~~~~~~~~~~--------~l~g~~v~IqGfG~VG~~~a~~l~~--~G---a~vv~vsD~~G~i~~-~~Gld~~~l 79 (244)
T PF00208_consen 14 VAYAIEAALEHLGGD--------SLEGKRVAIQGFGNVGSHAARFLAE--LG---AKVVAVSDSSGAIYD-PDGLDVEEL 79 (244)
T ss_dssp HHHHHHHHHHHTTCH--------SSTTCEEEEEESSHHHHHHHHHHHH--TT---EEEEEEEESSEEEEE-TTEEHHHHH
T ss_pred HHHHHHHHHHHcCCC--------CcCCCEEEEECCCHHHHHHHHHHHH--cC---CEEEEEecCceEEEc-CCCchHHHH
Confidence 344556666666653 12346899988877 5554444432 24 577766 555 22111 234
Q ss_pred HHHHHhCCCCEEEeC-C-C-CCC--hHHHHHHHHh-CCCEEEEecccccCChhHHh-hhc--CCcee
Q 023530 174 IRFLERHGIPYHYLC-A-K-ENE--REEELLELVQ-NTDFLVLARYMQPVPLQKEA-YLG--YKLLE 231 (281)
Q Consensus 174 ~~~A~~~gIP~~~i~-~-k-~~~--~e~~l~~~L~-~~DlIVLAgYMrILs~~fl~-~~~--~riIN 231 (281)
.++.++.|..+..++ . . ..+ .++ .+++. ++|+.+.|+.-..|+++-+. ..+ -|+|=
T Consensus 80 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~il~~~~DiliP~A~~~~I~~~~~~~~i~~~akiIv 144 (244)
T PF00208_consen 80 LRIKEERGSRVDDYPLESPDGAEYIPND--DEILSVDCDILIPCALGNVINEDNAPSLIKSGAKIIV 144 (244)
T ss_dssp HHHHHHHSSHSTTGTHTCSSTSEEECHH--CHGGTSSSSEEEEESSSTSBSCHHHCHCHHTT-SEEE
T ss_pred HHHHHHhCCcccccccccccceeEeccc--cccccccccEEEEcCCCCeeCHHHHHHHHhccCcEEE
Confidence 445556664121111 0 0 000 111 03455 99999999999999998887 666 56654
No 429
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=31.33 E-value=1.9e+02 Score=25.73 Aligned_cols=55 Identities=15% Similarity=0.176 Sum_probs=32.2
Q ss_pred eEEEEeeCCh-hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCC---hhHHHHHHhCCC-CEEEeC
Q 023530 130 KVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGPN---SHVIRFLERHGI-PYHYLC 188 (281)
Q Consensus 130 rIavl~Sg~G-snL~aLl~~~~~g~l~~eI~~Visn~pd~~~---a~~~~~A~~~gI-P~~~i~ 188 (281)
|.+|+.||+- |..- +..+.+.+ .+|.++.-|..-+.. ..+.+.|+.+|| |..+++
T Consensus 1 Kavvl~SGG~DSt~~-l~~~~~~~---~~v~al~~~YGq~~~~El~~a~~i~~~l~v~~~~~i~ 60 (209)
T PF06508_consen 1 KAVVLFSGGLDSTTC-LYWAKKEG---YEVYALTFDYGQRHRRELEAAKKIAKKLGVKEHEVID 60 (209)
T ss_dssp EEEEE--SSHHHHHH-HHHHHHH----SEEEEEEEESSSTTCHHHHHHHHHHHHCT-SEEEEEE
T ss_pred CEEEEeCCCHHHHHH-HHHHHHcC---CeEEEEEEECCCCCHHHHHHHHHHHHHhCCCCCEEee
Confidence 6889999983 3222 22222345 478888877633211 357889999999 888877
No 430
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=31.27 E-value=1.4e+02 Score=29.63 Aligned_cols=38 Identities=18% Similarity=0.117 Sum_probs=25.3
Q ss_pred eeEEEEeeCCh------hHHHHHHHhhhcCCCCeeEEEEEeCCCC
Q 023530 129 YKVAVLASKQE------HCLVDFLYGWQEGKLPVEITCVISNHDR 167 (281)
Q Consensus 129 ~rIavl~Sg~G------snL~aLl~~~~~g~l~~eI~~Visn~pd 167 (281)
+||+|.++-+. .-|.++++.++.-.-.++|. |+|+.|+
T Consensus 1 ~~i~i~G~~g~~N~GdeAil~~ii~~l~~~~p~~~i~-v~S~~P~ 44 (426)
T PRK10017 1 MKLLILGNHTCGNRGDSAILRGLLDAINILNPHAEVD-VMSRYPV 44 (426)
T ss_pred CeEEEEccccCCCccHHHHHHHHHHHHHhhCCCCeEE-EEecCcc
Confidence 46777766553 45677777777654346776 8898864
No 431
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.20 E-value=2.5e+02 Score=24.28 Aligned_cols=71 Identities=14% Similarity=0.050 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHH
Q 023530 99 REQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFL 177 (281)
Q Consensus 99 ~~~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A 177 (281)
..++...+++.++++|.+ +-++.+.. .....++++...++. +-++|...++ ++...++.+
T Consensus 14 ~~~~~~gi~~~~~~~g~~--------------~~~~~~~~~~~~~~~~i~~l~~~~----~dgiii~~~~-~~~~~~~~~ 74 (270)
T cd06296 14 ASEVLRGVEEAAAAAGYD--------------VVLSESGRRTSPERQWVERLSARR----TDGVILVTPE-LTSAQRAAL 74 (270)
T ss_pred HHHHHHHHHHHHHHcCCe--------------EEEecCCCchHHHHHHHHHHHHcC----CCEEEEecCC-CChHHHHHH
Confidence 567888888888887754 22222222 223334454444443 2222222122 234567888
Q ss_pred HhCCCCEEEeC
Q 023530 178 ERHGIPYHYLC 188 (281)
Q Consensus 178 ~~~gIP~~~i~ 188 (281)
++.+||+..++
T Consensus 75 ~~~~ipvV~i~ 85 (270)
T cd06296 75 RRTGIPFVVVD 85 (270)
T ss_pred hcCCCCEEEEe
Confidence 99999999987
No 432
>PRK04527 argininosuccinate synthase; Provisional
Probab=30.93 E-value=1.6e+02 Score=29.19 Aligned_cols=56 Identities=9% Similarity=0.097 Sum_probs=37.1
Q ss_pred CeeEEEEeeCC-h-hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCC---hhHHHHHHhCCC-CEEEeC
Q 023530 128 KYKVAVLASKQ-E-HCLVDFLYGWQEGKLPVEITCVISNHDRGPN---SHVIRFLERHGI-PYHYLC 188 (281)
Q Consensus 128 ~~rIavl~Sg~-G-snL~aLl~~~~~g~l~~eI~~Visn~pd~~~---a~~~~~A~~~gI-P~~~i~ 188 (281)
+.||+|..||+ + +.+-.++.. .| .++.+|..|-+..+. ..+.+.|++.|+ |+++++
T Consensus 2 ~~kVvVA~SGGvDSSvla~~l~e--~G---~~Viavt~d~gq~~~~El~~a~~~A~~lG~~~~~viD 63 (400)
T PRK04527 2 SKDIVLAFSGGLDTSFCIPYLQE--RG---YAVHTVFADTGGVDAEERDFIEKRAAELGAASHVTVD 63 (400)
T ss_pred CCcEEEEEcCChHHHHHHHHHHH--cC---CcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEec
Confidence 35899999998 3 444334432 34 478888877643211 246788999998 588887
No 433
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=30.64 E-value=1.4e+02 Score=29.12 Aligned_cols=75 Identities=19% Similarity=0.204 Sum_probs=40.3
Q ss_pred CCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC-CCCCChHHHHHHHHh--
Q 023530 127 PKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENEREEELLELVQ-- 203 (281)
Q Consensus 127 ~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~-~k~~~~e~~l~~~L~-- 203 (281)
+++||+|+.+|+- |++.-... -+.+|. =+|. .....+.+++|..+.... -++ + .++|.+.|+
T Consensus 167 ~~~rv~ii~tGdE-----l~~~g~~~-~~g~i~--dsn~-----~~l~~~l~~~G~~~~~~~~v~D-d-~~~i~~~l~~a 231 (394)
T cd00887 167 RRPRVAIISTGDE-----LVEPGEPL-APGQIY--DSNS-----YMLAALLRELGAEVVDLGIVPD-D-PEALREALEEA 231 (394)
T ss_pred cCCEEEEEeCCCc-----ccCCCCCC-CCCEEE--EChH-----HHHHHHHHHCCCEEEEeceeCC-C-HHHHHHHHHHH
Confidence 4679999999862 33211000 012222 1332 235567888888776655 222 1 233444443
Q ss_pred --CCCEEEEeccccc
Q 023530 204 --NTDFLVLARYMQP 216 (281)
Q Consensus 204 --~~DlIVLAgYMrI 216 (281)
+.|+||+.|=.-.
T Consensus 232 ~~~~DliittGG~s~ 246 (394)
T cd00887 232 LEEADVVITSGGVSV 246 (394)
T ss_pred hhCCCEEEEeCCCCC
Confidence 6899999885543
No 434
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=30.07 E-value=3.6e+02 Score=26.31 Aligned_cols=37 Identities=5% Similarity=0.137 Sum_probs=24.5
Q ss_pred CeeEEEEeeCChhHHHHHHHhhhc-CCCCeeEEEEEeCCC
Q 023530 128 KYKVAVLASKQEHCLVDFLYGWQE-GKLPVEITCVISNHD 166 (281)
Q Consensus 128 ~~rIavl~Sg~GsnL~aLl~~~~~-g~l~~eI~~Visn~p 166 (281)
..|+.|.++|+ ..+.+++.+++ .....++++++.+.+
T Consensus 125 ~~rvLIvGag~--~a~~l~~~L~~~~~~g~~vvG~idd~~ 162 (445)
T TIGR03025 125 LRRVLIVGTGE--AARELAAALSRNPDLGYRVVGFVDDRP 162 (445)
T ss_pred CCcEEEEECCH--HHHHHHHHHhhCccCCeEEEEEEeCCc
Confidence 45788888765 44566666543 345689999998653
No 435
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=30.07 E-value=1.8e+02 Score=27.31 Aligned_cols=58 Identities=21% Similarity=0.194 Sum_probs=37.8
Q ss_pred CeeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCC---hhHHHHHHhCCCCEEEeC
Q 023530 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPN---SHVIRFLERHGIPYHYLC 188 (281)
Q Consensus 128 ~~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~---a~~~~~A~~~gIP~~~i~ 188 (281)
+.|++|..||+ +|.+-+.+..-.-|+ ++++|-..-|-.|. -.+...|++.||...+++
T Consensus 17 ~~kv~vAfSGGvDSslLa~la~~~lG~---~v~AvTv~sP~~p~~e~e~A~~~A~~iGi~H~~i~ 78 (269)
T COG1606 17 KKKVVVAFSGGVDSSLLAKLAKEALGD---NVVAVTVDSPYIPRREIEEAKNIAKEIGIRHEFIK 78 (269)
T ss_pred cCeEEEEecCCccHHHHHHHHHHHhcc---ceEEEEEecCCCChhhhhHHHHHHHHhCCcceeee
Confidence 34899999998 465555554433453 56555544432222 256789999999988887
No 436
>PRK00509 argininosuccinate synthase; Provisional
Probab=29.90 E-value=2e+02 Score=28.50 Aligned_cols=57 Identities=14% Similarity=0.142 Sum_probs=36.4
Q ss_pred CeeEEEEeeCC-hhHHH-HHHHhhhcCCCCeeEEEEEeCCCCCCC-hhHHHHHHhCCC-CEEEeC
Q 023530 128 KYKVAVLASKQ-EHCLV-DFLYGWQEGKLPVEITCVISNHDRGPN-SHVIRFLERHGI-PYHYLC 188 (281)
Q Consensus 128 ~~rIavl~Sg~-GsnL~-aLl~~~~~g~l~~eI~~Visn~pd~~~-a~~~~~A~~~gI-P~~~i~ 188 (281)
+.||+|..||+ +|.+- .++.. . +..+|.+|..|.+...+ ..+.+.|++.|+ ++++++
T Consensus 2 ~~kVvva~SGGlDSsvla~~l~e--~--lG~eViavt~d~Gq~~dle~a~~~A~~lGi~~~~viD 62 (399)
T PRK00509 2 KKKVVLAYSGGLDTSVIIKWLKE--T--YGCEVIAFTADVGQGEELEPIREKALKSGASEIYVED 62 (399)
T ss_pred CCeEEEEEcCCHHHHHHHHHHHH--h--hCCeEEEEEEecCCHHHHHHHHHHHHHcCCCeEEEEc
Confidence 45899999998 34333 33332 2 23588888888642111 246789999998 466665
No 437
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=29.87 E-value=1.4e+02 Score=27.37 Aligned_cols=16 Identities=13% Similarity=0.627 Sum_probs=10.8
Q ss_pred HHHHHHhCCCCEEEeC
Q 023530 173 VIRFLERHGIPYHYLC 188 (281)
Q Consensus 173 ~~~~A~~~gIP~~~i~ 188 (281)
+.+.+++.||++...+
T Consensus 212 l~~~ik~~~v~~if~e 227 (282)
T cd01017 212 LVEFVKKSDVKYIFFE 227 (282)
T ss_pred HHHHHHHcCCCEEEEe
Confidence 4566677777777665
No 438
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=29.84 E-value=1.3e+02 Score=24.70 Aligned_cols=32 Identities=19% Similarity=0.389 Sum_probs=22.1
Q ss_pred eeEEEEEeCCCCCC-ChhHHHHHHhCCCCEEEeC
Q 023530 156 VEITCVISNHDRGP-NSHVIRFLERHGIPYHYLC 188 (281)
Q Consensus 156 ~eI~~Visn~pd~~-~a~~~~~A~~~gIP~~~i~ 188 (281)
..|..+-|= +.+. .....+.|+++|+|+..++
T Consensus 35 ~si~~lasi-~~K~~E~~L~~~A~~lg~pl~~~~ 67 (126)
T PRK07027 35 ADVRVVATL-DLKADEAGLLALCARHGWPLRAFS 67 (126)
T ss_pred HHhheeEeh-hhhcCCHHHHHHHHHhCCCeEEeC
Confidence 456666662 1112 3467899999999999986
No 439
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=29.79 E-value=2.7e+02 Score=26.27 Aligned_cols=51 Identities=24% Similarity=0.286 Sum_probs=34.1
Q ss_pred EeeCChh----HHHHHHHhhhcCCCCeeEEEEEeCCCCC----CChhHHHHHHhCCCCEEEeC
Q 023530 134 LASKQEH----CLVDFLYGWQEGKLPVEITCVISNHDRG----PNSHVIRFLERHGIPYHYLC 188 (281)
Q Consensus 134 l~Sg~Gs----nL~aLl~~~~~g~l~~eI~~Visn~pd~----~~a~~~~~A~~~gIP~~~i~ 188 (281)
+.|-..| ....|+..++.| +-+++|||--.. |.+...+.|.++||++..+|
T Consensus 55 ~is~h~hne~~~~~~li~~l~~g----~~valVSDAG~P~ISDPG~~LV~~a~~~gi~V~~lP 113 (275)
T COG0313 55 LISYHEHNEKEKLPKLIPLLKKG----KSVALVSDAGTPLISDPGYELVRAAREAGIRVVPLP 113 (275)
T ss_pred eecccCCcHHHHHHHHHHHHhcC----CeEEEEecCCCCcccCccHHHHHHHHHcCCcEEecC
Confidence 5555544 444566666666 355566763110 45677889999999999998
No 440
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=29.55 E-value=83 Score=25.36 Aligned_cols=90 Identities=18% Similarity=0.176 Sum_probs=48.0
Q ss_pred eeEEEEeeCChhHHH--HHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCC---CCEEEe-CCCCCChHHHHHHHH
Q 023530 129 YKVAVLASKQEHCLV--DFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHG---IPYHYL-CAKENEREEELLELV 202 (281)
Q Consensus 129 ~rIavl~Sg~GsnL~--aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~g---IP~~~i-~~k~~~~e~~l~~~L 202 (281)
|||++.+||.+.+.+ +++.+.++. ..+|..|+|.. +.++..... =++..- +.........-.+..
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~--g~~v~vv~S~~-------A~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 71 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRA--GWEVRVVLSPS-------AERFVTPEGLTGEPVYTDWDTWDRGDPAEHIELS 71 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTT--TSEEEEEESHH-------HHHHSHHHGHCCSCEECTHCTCSTTTTTCHHHHH
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhC--CCEEEEEECCc-------HHHHhhhhccccchhhhccccCCCCCCcCccccc
Confidence 689999999986555 456655543 47899898863 344443333 222221 000001111123333
Q ss_pred hCCCEEEEecccccCChhHHhhhcCCcee
Q 023530 203 QNTDFLVLARYMQPVPLQKEAYLGYKLLE 231 (281)
Q Consensus 203 ~~~DlIVLAgYMrILs~~fl~~~~~riIN 231 (281)
+.+|++|+|= .+.+.+.+..++|=+
T Consensus 72 ~~~D~~vVaP----aT~NtlaKiA~GiaD 96 (129)
T PF02441_consen 72 RWADAMVVAP----ATANTLAKIANGIAD 96 (129)
T ss_dssp HTESEEEEEE----EEHHHHHHHHTT--S
T ss_pred ccCCEEEEcc----cCHHHHHHHHhCCcc
Confidence 3799999973 566667776666544
No 441
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=29.53 E-value=3.6e+02 Score=23.03 Aligned_cols=57 Identities=7% Similarity=0.001 Sum_probs=35.2
Q ss_pred eEEEEeeCChhH---HHHHHHhhhcCCCCeeEEEEEeCCCCC-----------CChhHHHHHHhCCCCEEEeC
Q 023530 130 KVAVLASKQEHC---LVDFLYGWQEGKLPVEITCVISNHDRG-----------PNSHVIRFLERHGIPYHYLC 188 (281)
Q Consensus 130 rIavl~Sg~Gsn---L~aLl~~~~~g~l~~eI~~Visn~pd~-----------~~a~~~~~A~~~gIP~~~i~ 188 (281)
|-+|.+.|.|+. +++|....+.+.. .+..||-|+.-. +......+|+.+|++...+.
T Consensus 60 ~~vv~i~GDG~f~m~~~el~ta~~~~~~--~l~vvV~NN~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~ 130 (179)
T cd03372 60 RKVIVIDGDGSLLMNLGALATIAAEKPK--NLIIVVLDNGAYGSTGNQPTHAGKKTDLEAVAKACGLDNVATV 130 (179)
T ss_pred CcEEEEECCcHHHhCHHHHHHHHHcCCC--CEEEEEEcCccccccCCCCCCCCCCCCHHHHHHHcCCCeEEec
Confidence 667888888854 5667666555432 344454443210 12235678999999998875
No 442
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=29.40 E-value=4.6e+02 Score=24.19 Aligned_cols=73 Identities=15% Similarity=0.300 Sum_probs=38.3
Q ss_pred eEEEEeeCCh----hHHHHHHHhhh-c-CCCCeeEEEEEeCCCCCCCh--hHHHHHHhCCCCEEEeCCCCCChHHHHHHH
Q 023530 130 KVAVLASKQE----HCLVDFLYGWQ-E-GKLPVEITCVISNHDRGPNS--HVIRFLERHGIPYHYLCAKENEREEELLEL 201 (281)
Q Consensus 130 rIavl~Sg~G----snL~aLl~~~~-~-g~l~~eI~~Visn~pd~~~a--~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~ 201 (281)
++..|+..+| +.+..|..... . |. ..|. +|+.-+-+..+ ....+++..|+|+.... ...++.+.
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~~~~g~--~~V~-li~~D~~r~~a~eql~~~~~~~~~p~~~~~-----~~~~l~~~ 266 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFVLEHGN--KKVA-LITTDTYRIGAVEQLKTYAKILGVPVKVAR-----DPKELRKA 266 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHcCC--CeEE-EEECCccchhHHHHHHHHHHHhCCceeccC-----CHHHHHHH
Confidence 4444443344 55555655443 2 31 2454 44442322112 34567888999997753 12345555
Q ss_pred Hh---CCCEEEE
Q 023530 202 VQ---NTDFLVL 210 (281)
Q Consensus 202 L~---~~DlIVL 210 (281)
++ +.|+|++
T Consensus 267 l~~~~~~d~vli 278 (282)
T TIGR03499 267 LDRLRDKDLILI 278 (282)
T ss_pred HHHccCCCEEEE
Confidence 55 6898875
No 443
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=29.37 E-value=4.3e+02 Score=24.20 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=27.8
Q ss_pred hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCC
Q 023530 139 EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP 183 (281)
Q Consensus 139 GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP 183 (281)
..+|.+|+.....- ...|++|+||- ++.=...-+++||-
T Consensus 195 ~~~l~~iI~~l~~~--g~~VvAivsD~----g~~N~~~w~~Lgi~ 233 (236)
T PF12017_consen 195 ADILKNIIEKLHEI--GYNVVAIVSDM----GSNNISLWRELGIS 233 (236)
T ss_pred HHHHHHHHHHHHHC--CCEEEEEECCC----CcchHHHHHHcCCC
Confidence 48888888776543 46899999996 22335667788874
No 444
>PRK08618 ornithine cyclodeaminase; Validated
Probab=29.35 E-value=1.5e+02 Score=27.96 Aligned_cols=69 Identities=13% Similarity=0.119 Sum_probs=37.4
Q ss_pred CeeEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHH----hCCCCEEEeCCCCCChHHHHHHH
Q 023530 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLE----RHGIPYHYLCAKENEREEELLEL 201 (281)
Q Consensus 128 ~~rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~----~~gIP~~~i~~k~~~~e~~l~~~ 201 (281)
.++++|+++|.- ..+.+++.. . +.+-+.|++-. ...+.++++ ++++++..++ + ..+.
T Consensus 127 ~~~v~iiGaG~~a~~~~~al~~~--~---~~~~v~v~~r~----~~~a~~~~~~~~~~~~~~~~~~~----~----~~~~ 189 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLAV--R---DIERVRVYSRT----FEKAYAFAQEIQSKFNTEIYVVN----S----ADEA 189 (325)
T ss_pred CcEEEEECCcHHHHHHHHHHHhc--C---CccEEEEECCC----HHHHHHHHHHHHHhcCCcEEEeC----C----HHHH
Confidence 458999999973 333444331 1 23444455433 223444444 4577655543 1 2234
Q ss_pred HhCCCEEEEecc
Q 023530 202 VQNTDFLVLARY 213 (281)
Q Consensus 202 L~~~DlIVLAgY 213 (281)
++++|+||.|-=
T Consensus 190 ~~~aDiVi~aT~ 201 (325)
T PRK08618 190 IEEADIIVTVTN 201 (325)
T ss_pred HhcCCEEEEccC
Confidence 468899888754
No 445
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=29.19 E-value=1.3e+02 Score=29.48 Aligned_cols=80 Identities=16% Similarity=0.132 Sum_probs=43.1
Q ss_pred CeeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHhCCC
Q 023530 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (281)
Q Consensus 128 ~~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~~~D 206 (281)
..+|+|++.|. |..+-..+.. .|- .+| +++|+ ....+.++|+++|..+.. . +.+.+.+.++|
T Consensus 182 ~~~vlViGaG~iG~~~a~~L~~--~G~--~~V--~v~~r---~~~ra~~la~~~g~~~~~-------~-~~~~~~l~~aD 244 (423)
T PRK00045 182 GKKVLVIGAGEMGELVAKHLAE--KGV--RKI--TVANR---TLERAEELAEEFGGEAIP-------L-DELPEALAEAD 244 (423)
T ss_pred CCEEEEECchHHHHHHHHHHHH--CCC--CeE--EEEeC---CHHHHHHHHHHcCCcEee-------H-HHHHHHhccCC
Confidence 36899998876 3332222221 231 133 34555 234456688888754221 1 12445556899
Q ss_pred EEEEec--ccccCChhHHhh
Q 023530 207 FLVLAR--YMQPVPLQKEAY 224 (281)
Q Consensus 207 lIVLAg--YMrILs~~fl~~ 224 (281)
+||.|- ---++.++.++.
T Consensus 245 vVI~aT~s~~~~i~~~~l~~ 264 (423)
T PRK00045 245 IVISSTGAPHPIIGKGMVER 264 (423)
T ss_pred EEEECCCCCCcEEcHHHHHH
Confidence 999983 234556665544
No 446
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=28.98 E-value=2.7e+02 Score=22.07 Aligned_cols=76 Identities=14% Similarity=0.192 Sum_probs=40.6
Q ss_pred EeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHhCCCEEEEecc
Q 023530 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARY 213 (281)
Q Consensus 134 l~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~~~DlIVLAgY 213 (281)
++||...++++ ++.|+ +..+.+-+|-++.-......+|+.++||++.+-+ + ++|-.++-+...+++|
T Consensus 18 lv~G~~~v~~a----ik~gk--~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t---~--~eLg~a~Gk~~~~~ia-- 84 (104)
T PRK05583 18 LLEGYNKCEEA----IKKKK--VYLIIISNDISENSKNKFKNYCNKYNIPYIEGYS---K--EELGNAIGRDEIKILG-- 84 (104)
T ss_pred eeecHHHHHHH----HHcCC--ceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecC---H--HHHHHHhCCCCeEEEE--
Confidence 56776555444 44563 3444444443211112467788999999987632 1 3465666544455554
Q ss_pred cccCChhHHhh
Q 023530 214 MQPVPLQKEAY 224 (281)
Q Consensus 214 MrILs~~fl~~ 224 (281)
|.++.|-+.
T Consensus 85 --i~d~g~a~~ 93 (104)
T PRK05583 85 --VKDKNMAKK 93 (104)
T ss_pred --EeChHHHHH
Confidence 444444443
No 447
>COG0245 IspF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Lipid metabolism]
Probab=28.89 E-value=1.7e+02 Score=25.33 Aligned_cols=79 Identities=9% Similarity=0.059 Sum_probs=52.1
Q ss_pred EEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccceeeeecCC
Q 023530 46 VFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPDI 125 (281)
Q Consensus 46 tV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~~~~~~~~~ 125 (281)
...|.|+.-++.++.+.+.++|..|.+++.++ +.+-|+.. .-..+-.+.+|+.|+++..++++..
T Consensus 67 ~~kgadS~~lL~~~~~~v~~~g~~i~Nvd~ti-----------i~~~PK~~---P~~~amr~~ia~~L~i~~~~invKa- 131 (159)
T COG0245 67 RWKGADSRILLKEAVELVREKGYRIGNVDITI-----------IAQRPKLG---PYREAMRANIAELLGIPVDRINVKA- 131 (159)
T ss_pred ccCCCchHHHHHHHHHHHHHhCcEEEeEEEEE-----------EEecCccc---chHHHHHHHHHHHhCCCchheEEEE-
Confidence 34588999999999999999999999987643 33445421 1233334456777887765554432
Q ss_pred CCCeeEEEEeeCCh
Q 023530 126 DPKYKVAVLASKQE 139 (281)
Q Consensus 126 ~~~~rIavl~Sg~G 139 (281)
...-++++.+-++|
T Consensus 132 tT~E~LGf~Gr~eG 145 (159)
T COG0245 132 TTTEKLGFTGRGEG 145 (159)
T ss_pred eccCccccccccCc
Confidence 33457777777665
No 448
>PRK06141 ornithine cyclodeaminase; Validated
Probab=28.76 E-value=2.6e+02 Score=26.20 Aligned_cols=85 Identities=9% Similarity=0.002 Sum_probs=44.4
Q ss_pred CeeEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhC---CCCEEEeCCCCCChHHHHHHHH
Q 023530 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERH---GIPYHYLCAKENEREEELLELV 202 (281)
Q Consensus 128 ~~rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~---gIP~~~i~~k~~~~e~~l~~~L 202 (281)
.++|+|+++|.- ..+.+++.. .+ ..+| .+.|+ ....+.++|+++ |+++.... + ..+.+
T Consensus 125 ~~~v~iiG~G~~a~~~~~al~~~--~~--~~~V--~V~~R---s~~~a~~~a~~~~~~g~~~~~~~----~----~~~av 187 (314)
T PRK06141 125 ASRLLVVGTGRLASLLALAHASV--RP--IKQV--RVWGR---DPAKAEALAAELRAQGFDAEVVT----D----LEAAV 187 (314)
T ss_pred CceEEEECCcHHHHHHHHHHHhc--CC--CCEE--EEEcC---CHHHHHHHHHHHHhcCCceEEeC----C----HHHHH
Confidence 458999999973 333444331 12 1233 34565 234455666553 55554432 1 22455
Q ss_pred hCCCEEEEecccc--cCChhHHhhhcCCcee
Q 023530 203 QNTDFLVLARYMQ--PVPLQKEAYLGYKLLE 231 (281)
Q Consensus 203 ~~~DlIVLAgYMr--ILs~~fl~~~~~riIN 231 (281)
+++|+||.|-=-. ++..+.+ -++..||
T Consensus 188 ~~aDIVi~aT~s~~pvl~~~~l--~~g~~i~ 216 (314)
T PRK06141 188 RQADIISCATLSTEPLVRGEWL--KPGTHLD 216 (314)
T ss_pred hcCCEEEEeeCCCCCEecHHHc--CCCCEEE
Confidence 6899998875543 1222222 2456777
No 449
>PRK07283 hypothetical protein; Provisional
Probab=28.67 E-value=1e+02 Score=24.01 Aligned_cols=75 Identities=15% Similarity=0.065 Sum_probs=41.2
Q ss_pred EeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHhCCCEEEEecc
Q 023530 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARY 213 (281)
Q Consensus 134 l~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~~~DlIVLAgY 213 (281)
+++|...++. ++++|+ +..+.+-+|-++.-.....+.|+.++||++.+.++ ++|-.++-+ +..|+|
T Consensus 19 lv~G~~~v~~----aik~gk--~~lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~~t~-----~eLG~a~Gk-~~~vva-- 84 (98)
T PRK07283 19 IISGEELVVK----AIQSGQ--AKLVFLANDAGPNLTKKVTDKSNYYQVEVSTVFST-----LELSAAVGK-PRKVLA-- 84 (98)
T ss_pred eeEcHHHHHH----HHHcCC--ccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCH-----HHHHHHhCC-CceEEE--
Confidence 5666655444 444564 44555555532111124567889999999876522 346566655 345543
Q ss_pred cccCChhHHhh
Q 023530 214 MQPVPLQKEAY 224 (281)
Q Consensus 214 MrILs~~fl~~ 224 (281)
|.++.|-+.
T Consensus 85 --i~d~g~a~~ 93 (98)
T PRK07283 85 --VTDAGFSKK 93 (98)
T ss_pred --EeChhHHHH
Confidence 555555443
No 450
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=28.66 E-value=2.7e+02 Score=25.94 Aligned_cols=79 Identities=19% Similarity=0.140 Sum_probs=42.6
Q ss_pred CeeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHhCCC
Q 023530 128 KYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTD 206 (281)
Q Consensus 128 ~~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~~~D 206 (281)
.+|++|++.|. |..+...+.+ .| ++|.. +|+ .....+.+++.|..+..+ +.+.+.+++.|
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~--~G---a~V~v--~~r----~~~~~~~~~~~G~~~~~~--------~~l~~~l~~aD 212 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKA--LG---ANVTV--GAR----KSAHLARITEMGLSPFHL--------SELAEEVGKID 212 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHH--CC---CEEEE--EEC----CHHHHHHHHHcCCeeecH--------HHHHHHhCCCC
Confidence 46899999886 3333333332 23 45443 343 112366778887543321 23556666899
Q ss_pred EEEEecccccCChhHHhhh
Q 023530 207 FLVLARYMQPVPLQKEAYL 225 (281)
Q Consensus 207 lIVLAgYMrILs~~fl~~~ 225 (281)
+|+.+==..+++++.++..
T Consensus 213 iVI~t~p~~~i~~~~l~~~ 231 (296)
T PRK08306 213 IIFNTIPALVLTKEVLSKM 231 (296)
T ss_pred EEEECCChhhhhHHHHHcC
Confidence 9988622233444444333
No 451
>PLN02347 GMP synthetase
Probab=28.62 E-value=2.1e+02 Score=29.38 Aligned_cols=57 Identities=14% Similarity=0.156 Sum_probs=37.1
Q ss_pred CeeEEEEeeCC-hhHHH-HHHHhhhcCCCCeeEEEEEeCCCCCCC---hhH-HHHHHhCCCCEEEeC
Q 023530 128 KYKVAVLASKQ-EHCLV-DFLYGWQEGKLPVEITCVISNHDRGPN---SHV-IRFLERHGIPYHYLC 188 (281)
Q Consensus 128 ~~rIavl~Sg~-GsnL~-aLl~~~~~g~l~~eI~~Visn~pd~~~---a~~-~~~A~~~gIP~~~i~ 188 (281)
..|+++..||+ +|.+- .|+.. .-| .++.+|..+++-.+. ..+ ...|+++|||+.+++
T Consensus 229 ~~~vvvalSGGVDSsvla~l~~~-alG---~~v~av~id~g~~~~~E~~~~~~~~a~~lgi~~~vvd 291 (536)
T PLN02347 229 DEHVICALSGGVDSTVAATLVHK-AIG---DRLHCVFVDNGLLRYKEQERVMETFKRDLHLPVTCVD 291 (536)
T ss_pred CCeEEEEecCChhHHHHHHHHHH-HhC---CcEEEEEEeCCCCChhHHHHHHHHHHHHcCCcEEEEe
Confidence 46799999998 34444 44433 124 378888887532211 123 557889999999998
No 452
>PF01250 Ribosomal_S6: Ribosomal protein S6; InterPro: IPR000529 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S6 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S6 is known to bind together with S18 to 16S ribosomal RNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups bacterial, red algal chloroplast and cyanelle S6 ribosomal proteins.; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 3BBN_F 3R3T_B 3F1E_F 2QNH_g 2OW8_g 3PYQ_F 3PYS_F 3PYU_F 3MR8_F 3PYN_F ....
Probab=28.59 E-value=1.8e+02 Score=21.98 Aligned_cols=53 Identities=11% Similarity=0.285 Sum_probs=36.3
Q ss_pred CcchHHHHHHHHHhCCCeEeEeeeec---------cCCCCeEEEEEEEEeCCCCCCHHHHHHHHH
Q 023530 52 EVGIVAKLSECIASRGGNILAADVFV---------PEKKNVFYSRSEFIFDPIKWPREQMDEDFF 107 (281)
Q Consensus 52 rpGIVa~VS~~La~~giNI~dl~q~~---------~~~~g~F~mrlev~~p~~~~~~~~L~~~L~ 107 (281)
..-++..+.+.+.++|+.|.+++.-- ....|.|+ .+.++.++ ....+|++.|.
T Consensus 18 ~~~~~~~~~~~i~~~gg~v~~~~~~G~r~LaY~i~k~~~G~Y~-~~~f~~~~--~~i~el~~~l~ 79 (92)
T PF01250_consen 18 IKKLIERVKKIIEKNGGVVRSVENWGKRRLAYPIKKQKEGHYF-LFNFDASP--SAIKELERKLR 79 (92)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEEEEEEEEESSEETTECEEEEE-EEEEEEST--THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEEeecccccCCCCCCEEEEE-EEEEEeCH--HHHHHHHHHhc
Confidence 45788999999999999999988743 11356665 46777664 24555555553
No 453
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=28.45 E-value=2.5e+02 Score=22.94 Aligned_cols=58 Identities=17% Similarity=0.307 Sum_probs=34.4
Q ss_pred EeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCC--hhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHh
Q 023530 134 LASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPN--SHVIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (281)
Q Consensus 134 l~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~--a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~ 203 (281)
+++|.-.+ +++++.|+ +..+.+-.|-.+ .+ .....+|+++|||+..+.++ ++|-+++.
T Consensus 31 lv~G~~~v----~kaikkgk--akLVilA~D~s~-~~i~~~~~~lc~~~~Vp~~~~~tk-----~eLG~a~G 90 (122)
T PRK04175 31 IKKGTNET----TKAVERGI--AKLVVIAEDVDP-EEIVAHLPLLCEEKKIPYVYVPSK-----KDLGKAAG 90 (122)
T ss_pred EeEcHHHH----HHHHHcCC--ccEEEEeCCCCh-HHHHHHHHHHHHHcCCCEEEECCH-----HHHHHHhC
Confidence 45555444 45555564 566656565421 12 35778899999998887632 24555554
No 454
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=28.40 E-value=2.6e+02 Score=23.77 Aligned_cols=70 Identities=11% Similarity=0.090 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCCh----
Q 023530 96 KWPREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNS---- 171 (281)
Q Consensus 96 ~~~~~~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a---- 171 (281)
..+++++.+.+++.|+++|++ +.+..++. +| +|++.+++-. .+..+||-|. .+
T Consensus 23 ~~tl~di~~~~~~~a~~~g~~---v~~~QSN~----------EG----elId~i~~a~--~~~dgiIINp----ga~THt 79 (141)
T TIGR01088 23 SQTLEEIVEIIETFAAQLNVE---LEFFQSNS----------EG----QLIDKIHEAE--GQYDGIIINP----GALTHT 79 (141)
T ss_pred CCCHHHHHHHHHHHHHHcCCE---EEEEeeCc----------HH----HHHHHHHhcc--ccCCEEEEcC----hHHhhh
Confidence 457899999999999998875 22222222 23 3455544431 2356788983 33
Q ss_pred --hHHHHHHhCCCCEEEeC
Q 023530 172 --HVIRFLERHGIPYHYLC 188 (281)
Q Consensus 172 --~~~~~A~~~gIP~~~i~ 188 (281)
..++--+..++|+.-+-
T Consensus 80 SiAl~DAl~~~~~P~vEVH 98 (141)
T TIGR01088 80 SVALRDALAAVSLPVVEVH 98 (141)
T ss_pred HHHHHHHHHcCCCCEEEEE
Confidence 23445577899986653
No 455
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=28.37 E-value=3.1e+02 Score=23.63 Aligned_cols=75 Identities=9% Similarity=0.032 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCC-CChhHHHH
Q 023530 99 REQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRG-PNSHVIRF 176 (281)
Q Consensus 99 ~~~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~-~~a~~~~~ 176 (281)
...+.+.+++.|++++.+...+ .-+.. .....+.++..-+.. +-+||....+. .-.+.++.
T Consensus 13 ~~~~~~g~~~~a~~~g~~~~~~-------------~~~~~d~~~q~~~i~~~i~~~----~d~Iiv~~~~~~~~~~~l~~ 75 (257)
T PF13407_consen 13 WQQVIKGAKAAAKELGYEVEIV-------------FDAQNDPEEQIEQIEQAISQG----VDGIIVSPVDPDSLAPFLEK 75 (257)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEE-------------EESTTTHHHHHHHHHHHHHTT----ESEEEEESSSTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCEEEEe-------------CCCCCCHHHHHHHHHHHHHhc----CCEEEecCCCHHHHHHHHHH
Confidence 4567888899999988753211 11112 233333333332222 22333332211 23578999
Q ss_pred HHhCCCCEEEeCCC
Q 023530 177 LERHGIPYHYLCAK 190 (281)
Q Consensus 177 A~~~gIP~~~i~~k 190 (281)
|++.|||+..++..
T Consensus 76 ~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 76 AKAAGIPVVTVDSD 89 (257)
T ss_dssp HHHTTSEEEEESST
T ss_pred HhhcCceEEEEecc
Confidence 99999999999843
No 456
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=28.32 E-value=3.9e+02 Score=24.37 Aligned_cols=76 Identities=21% Similarity=0.313 Sum_probs=40.6
Q ss_pred eeEEEEeeCCh-hHH-HHHHHhhhcCCCCeeEEEEEeCCCCCCC-hhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHhCC
Q 023530 129 YKVAVLASKQE-HCL-VDFLYGWQEGKLPVEITCVISNHDRGPN-SHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (281)
Q Consensus 129 ~rIavl~Sg~G-snL-~aLl~~~~~g~l~~eI~~Visn~pd~~~-a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~~~ 205 (281)
.+|.|+..|.+ .++ ..+++++..-..+.++..|+.... +. ....+.++... .+.... +-+.+.+++..+
T Consensus 171 ~~iLi~~GG~d~~~~~~~~l~~l~~~~~~~~i~vv~G~~~--~~~~~l~~~~~~~~-~i~~~~-----~~~~m~~lm~~a 242 (279)
T TIGR03590 171 RRVLVSFGGADPDNLTLKLLSALAESQINISITLVTGSSN--PNLDELKKFAKEYP-NIILFI-----DVENMAELMNEA 242 (279)
T ss_pred CeEEEEeCCcCCcCHHHHHHHHHhccccCceEEEEECCCC--cCHHHHHHHHHhCC-CEEEEe-----CHHHHHHHHHHC
Confidence 46766666664 443 455666543222356666665321 22 22344444432 233322 123577888899
Q ss_pred CEEEEec
Q 023530 206 DFLVLAR 212 (281)
Q Consensus 206 DlIVLAg 212 (281)
|++|.+|
T Consensus 243 Dl~Is~~ 249 (279)
T TIGR03590 243 DLAIGAA 249 (279)
T ss_pred CEEEECC
Confidence 9999974
No 457
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=28.27 E-value=89 Score=28.30 Aligned_cols=53 Identities=17% Similarity=0.111 Sum_probs=27.2
Q ss_pred HHHHHhCCCCEEEeCCC-C-CChHHHHHHHHh-CCCEEEEecccccCC-hhHHhhhc
Q 023530 174 IRFLERHGIPYHYLCAK-E-NEREEELLELVQ-NTDFLVLARYMQPVP-LQKEAYLG 226 (281)
Q Consensus 174 ~~~A~~~gIP~~~i~~k-~-~~~e~~l~~~L~-~~DlIVLAgYMrILs-~~fl~~~~ 226 (281)
.+.++++|+.+.+++.. . .+.++.+.++.+ ++|+|+..|+..-=. .+.-++||
T Consensus 24 ~~~~~~~gv~~~~~e~~~~~~~~~~~i~~~~~~g~dlIi~~g~~~~~~~~~vA~~~p 80 (258)
T cd06353 24 KAAEKALGVEVTYVENVPEGADAERVLRELAAQGYDLIFGTSFGFMDAALKVAKEYP 80 (258)
T ss_pred HHHHHhcCCeEEEEecCCchHhHHHHHHHHHHcCCCEEEECchhhhHHHHHHHHHCC
Confidence 44445577777666522 1 122334444444 688888876654321 23334555
No 458
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=28.12 E-value=91 Score=25.91 Aligned_cols=34 Identities=3% Similarity=-0.043 Sum_probs=22.6
Q ss_pred CCCEEEeCCCCCChHHHHHHHHhCCCEEEEeccc
Q 023530 181 GIPYHYLCAKENEREEELLELVQNTDFLVLARYM 214 (281)
Q Consensus 181 gIP~~~i~~k~~~~e~~l~~~L~~~DlIVLAgYM 214 (281)
.+.+.+++...+..|..|++.++.-|+||.+.|.
T Consensus 28 ~~~~i~Vd~g~DaaD~~I~~~~~~gDiVITqDig 61 (130)
T PF02639_consen 28 YVEMIVVDSGFDAADFYIVNHAKPGDIVITQDIG 61 (130)
T ss_pred CeEEEEECCCCChHHHHHHHcCCCCCEEEECCHH
Confidence 3445555532234456777877789999999885
No 459
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=28.06 E-value=1.2e+02 Score=30.27 Aligned_cols=35 Identities=14% Similarity=-0.089 Sum_probs=23.5
Q ss_pred ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeee
Q 023530 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADV 75 (281)
Q Consensus 41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q 75 (281)
.++.+.++-|=+-=-.+.=-..|.+.|.|.-.+.+
T Consensus 10 ePfrir~vepi~~ttre~RE~al~~ag~N~F~l~S 44 (471)
T COG3033 10 EPFRIRVVEPIKRTTREYREEALKKAGYNPFLLDS 44 (471)
T ss_pred CceeeeeeccccccCHHHHHHHHHHcCCCeeeccc
Confidence 45666666664444455566788889998877665
No 460
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=28.03 E-value=2.1e+02 Score=26.38 Aligned_cols=57 Identities=25% Similarity=0.383 Sum_probs=38.2
Q ss_pred eeEEEEEeCCCCCCChhH--HHHHHhCC--CCEEEeCCCCCChHHHHHHHHh--CCCEEEEecccccC
Q 023530 156 VEITCVISNHDRGPNSHV--IRFLERHG--IPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQPV 217 (281)
Q Consensus 156 ~eI~~Visn~pd~~~a~~--~~~A~~~g--IP~~~i~~k~~~~e~~l~~~L~--~~DlIVLAgYMrIL 217 (281)
.+|..+|.|+-+ ..+.. .++.++.. ||++.=+ ..+..++++|. +-|++|--+.+|+.
T Consensus 61 ~~I~f~vVN~~~-~~s~~~~~~l~~r~~~~ipVyqq~----~~q~dvW~~L~G~kdD~~iyDRCGrL~ 123 (238)
T PF04592_consen 61 SNISFMVVNHQG-EHSRLKYWELKRRVSEHIPVYQQD----ENQPDVWELLNGSKDDFLIYDRCGRLT 123 (238)
T ss_pred CceEEEEEcCCC-cchhHHHHHHHHhCCCCCceecCC----ccccCHHHHhCCCcCcEEEEeccCcEE
Confidence 479999999743 23333 23444544 8888733 12345899999 78999999888863
No 461
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=27.99 E-value=1.7e+02 Score=29.02 Aligned_cols=57 Identities=14% Similarity=0.188 Sum_probs=33.1
Q ss_pred CeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCC-CCCChHHHHHHHHh-CCCEEEEec
Q 023530 155 PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA-KENEREEELLELVQ-NTDFLVLAR 212 (281)
Q Consensus 155 ~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~-k~~~~e~~l~~~L~-~~DlIVLAg 212 (281)
.++|.+.-|| |-.-+-.+...-.+.|||++-... ...++...+.+.++ +||+|+=-|
T Consensus 56 GA~v~~~~~n-p~stqd~vaaaL~~~gi~v~a~~~~~~~ey~~~~~~~l~~~p~~iiDdG 114 (406)
T TIGR00936 56 GAEVAWTSCN-PLSTQDDVAAALAKAGIPVFAWRGETNEEYYWAIEQVLDHEPNIIIDDG 114 (406)
T ss_pred CCEEEEEccC-CccccHHHHHHHHhCCceEEEecCCCHHHHHHHHHHHhcCCCCEEEecc
Confidence 3899988888 322222344444478999998651 11112233555666 788887544
No 462
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=27.89 E-value=1.3e+02 Score=29.70 Aligned_cols=54 Identities=13% Similarity=0.080 Sum_probs=36.3
Q ss_pred eEEEEeeCC-h-hHHHHHHHhhhcCCCCeeEEEEEeCCCCC--CChhHHHHHHhCCC-CEEEeC
Q 023530 130 KVAVLASKQ-E-HCLVDFLYGWQEGKLPVEITCVISNHDRG--PNSHVIRFLERHGI-PYHYLC 188 (281)
Q Consensus 130 rIavl~Sg~-G-snL~aLl~~~~~g~l~~eI~~Visn~pd~--~~a~~~~~A~~~gI-P~~~i~ 188 (281)
||++..||+ + +.+-.++.. .| .+|.+|..|..-+ .-..+.+.|+++|+ ++++++
T Consensus 1 kVvla~SGGlDSsvll~~l~e--~g---~~V~av~id~Gq~~~e~~~a~~~a~~lGi~~~~viD 59 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLRE--KG---YEVIAYTADVGQPEEDIDAIPEKALEYGAENHYTID 59 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHH--cC---CEEEEEEEecCCChHHHHHHHHHHHHhCCCeEEEEe
Confidence 689999998 3 444444442 23 5888888886321 01246789999998 788887
No 463
>PRK08291 ectoine utilization protein EutC; Validated
Probab=27.64 E-value=1.3e+02 Score=28.46 Aligned_cols=90 Identities=13% Similarity=0.116 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHH
Q 023530 98 PREQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIR 175 (281)
Q Consensus 98 ~~~~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~ 175 (281)
....++.+-........+ . ....++++|+++|.- ..+.++... . +.+-+.|. |+ ....+.+
T Consensus 110 ~lt~~rT~a~~~~a~~~l-------a-~~~~~~v~IiGaG~~a~~~~~al~~~---~--~~~~V~v~-~R---~~~~a~~ 172 (330)
T PRK08291 110 YLTDVRTAAAGAVAARHL-------A-REDASRAAVIGAGEQARLQLEALTLV---R--PIREVRVW-AR---DAAKAEA 172 (330)
T ss_pred hHHHHHHHHHHHHHHHHh-------C-CCCCCEEEEECCCHHHHHHHHHHHhc---C--CCCEEEEE-cC---CHHHHHH
Confidence 355666655544333222 1 123458999999974 333444331 1 23333343 44 2334555
Q ss_pred HHHh----CCCCEEEeCCCCCChHHHHHHHHhCCCEEEEec
Q 023530 176 FLER----HGIPYHYLCAKENEREEELLELVQNTDFLVLAR 212 (281)
Q Consensus 176 ~A~~----~gIP~~~i~~k~~~~e~~l~~~L~~~DlIVLAg 212 (281)
++++ +|+++...+ + +.+.++++|+||.|-
T Consensus 173 l~~~~~~~~g~~v~~~~----d----~~~al~~aDiVi~aT 205 (330)
T PRK08291 173 YAADLRAELGIPVTVAR----D----VHEAVAGADIIVTTT 205 (330)
T ss_pred HHHHHhhccCceEEEeC----C----HHHHHccCCEEEEee
Confidence 5553 467654432 1 234455789998874
No 464
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=27.62 E-value=2.8e+02 Score=21.18 Aligned_cols=41 Identities=20% Similarity=0.333 Sum_probs=28.9
Q ss_pred HHHHHHhCCCCEEEeCCCCCChHHHHHHHHh--CCCEEEEecccc
Q 023530 173 VIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQ 215 (281)
Q Consensus 173 ~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~--~~DlIVLAgYMr 215 (281)
..+.+++.++++..+.. .+..+.|.+..+ ++|+||+....+
T Consensus 54 ~~~~~~~~~~~~~~~~~--~~~~~~I~~~~~~~~~dllviG~~~~ 96 (124)
T cd01987 54 ALRLAEELGAEVVTLPG--DDVAEAIVEFAREHNVTQIVVGKSRR 96 (124)
T ss_pred HHHHHHHcCCEEEEEeC--CcHHHHHHHHHHHcCCCEEEeCCCCC
Confidence 45678888998776542 234567888777 899999976644
No 465
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=27.56 E-value=1.3e+02 Score=29.73 Aligned_cols=73 Identities=18% Similarity=0.211 Sum_probs=40.7
Q ss_pred CCeeEEEEeeCChhHHHHHHHhhhcCC-C-CeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC-CCCCChHHHHHHHHh
Q 023530 127 PKYKVAVLASKQEHCLVDFLYGWQEGK-L-PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC-AKENEREEELLELVQ 203 (281)
Q Consensus 127 ~~~rIavl~Sg~GsnL~aLl~~~~~g~-l-~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~-~k~~~~e~~l~~~L~ 203 (281)
+++||+|+.+|.- |++. |+ + ..+|. =+|. .....+.+++|+.+.... -++ + .+++.+.|+
T Consensus 192 ~~prV~IisTGdE-----l~~~---g~~~~~g~i~--dsN~-----~~L~a~l~~~G~~v~~~~~v~D-d-~~~i~~~l~ 254 (419)
T PRK14690 192 RPLRVAVLSTGDE-----LVEP---GALAEVGQIY--DANR-----PMLLALARRWGHAPVDLGRVGD-D-RAALAARLD 254 (419)
T ss_pred cCCEEEEEEcccc-----ccCC---CCCCCCCeEE--eCHH-----HHHHHHHHHCCCEEEEEeeeCC-C-HHHHHHHHH
Confidence 5679999999853 3321 11 1 12322 1332 135667899998776554 222 1 233444443
Q ss_pred ----CCCEEEEeccccc
Q 023530 204 ----NTDFLVLARYMQP 216 (281)
Q Consensus 204 ----~~DlIVLAgYMrI 216 (281)
+.|+||+.|=+-.
T Consensus 255 ~a~~~~DlIItTGG~S~ 271 (419)
T PRK14690 255 RAAAEADVILTSGGASA 271 (419)
T ss_pred HhCccCCEEEEcCCccC
Confidence 7899999874444
No 466
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.48 E-value=4.3e+02 Score=23.57 Aligned_cols=135 Identities=11% Similarity=0.067 Sum_probs=83.8
Q ss_pred EEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccceeeeecC
Q 023530 45 HVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMRSVVRVPD 124 (281)
Q Consensus 45 ltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~~~~~~~~ 124 (281)
+-|.=.+.+.-...+++.|.+.|+.++|+.-.+ |. -.+.++++.++++-
T Consensus 16 i~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~---------------~~-------a~~~i~~l~~~~~~--------- 64 (213)
T PRK06552 16 VAVVRGESKEEALKISLAVIKGGIKAIEVTYTN---------------PF-------ASEVIKELVELYKD--------- 64 (213)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCEEEEECCC---------------cc-------HHHHHHHHHHHcCC---------
Confidence 334445566677889999998888887775421 11 12344455444321
Q ss_pred CCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHh-
Q 023530 125 IDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ- 203 (281)
Q Consensus 125 ~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~- 203 (281)
.+ + .+++.|+-.+.++.-.+++.| ++ .++|-. -+-.+.++|+++|||+.-=- ....++.+.++
T Consensus 65 --~p-~-~~vGaGTV~~~~~~~~a~~aG---A~--FivsP~---~~~~v~~~~~~~~i~~iPG~----~T~~E~~~A~~~ 128 (213)
T PRK06552 65 --DP-E-VLIGAGTVLDAVTARLAILAG---AQ--FIVSPS---FNRETAKICNLYQIPYLPGC----MTVTEIVTALEA 128 (213)
T ss_pred --CC-C-eEEeeeeCCCHHHHHHHHHcC---CC--EEECCC---CCHHHHHHHHHcCCCEECCc----CCHHHHHHHHHc
Confidence 01 1 346667777777777777666 23 355643 35578999999999976521 12346777777
Q ss_pred CCCEEEEecccccCChhHHhhhcC
Q 023530 204 NTDFLVLARYMQPVPLQKEAYLGY 227 (281)
Q Consensus 204 ~~DlIVLAgYMrILs~~fl~~~~~ 227 (281)
++|+|-+.= -..+++++++...+
T Consensus 129 Gad~vklFP-a~~~G~~~ik~l~~ 151 (213)
T PRK06552 129 GSEIVKLFP-GSTLGPSFIKAIKG 151 (213)
T ss_pred CCCEEEECC-cccCCHHHHHHHhh
Confidence 999999821 12367777777663
No 467
>PRK00876 nadE NAD synthetase; Reviewed
Probab=27.47 E-value=4.4e+02 Score=25.26 Aligned_cols=57 Identities=16% Similarity=0.075 Sum_probs=34.0
Q ss_pred eEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCC-C--ChhHHHHHHhCCCCEEEeC
Q 023530 130 KVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRG-P--NSHVIRFLERHGIPYHYLC 188 (281)
Q Consensus 130 rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~-~--~a~~~~~A~~~gIP~~~i~ 188 (281)
+|++..||+ +|.+-+.+-.-..|. .++.+|.-..... + -..+...|+.+||+++.++
T Consensus 35 ~VvVgLSGGIDSSvvaaLa~~a~g~--~~v~av~~~~~~s~~~e~~~A~~lA~~LGi~~~~i~ 95 (326)
T PRK00876 35 GVVLGLSGGIDSSVTAALCVRALGK--ERVYGLLMPERDSSPESLRLGREVAEHLGVEYVVED 95 (326)
T ss_pred CEEEEccCCHHHHHHHHHHHHhhCC--CcEEEEEecCCCCChHHHHHHHHHHHHcCCCEEEEE
Confidence 799999998 344444332211232 2455554432110 1 1357889999999999987
No 468
>PF06877 RraB: Regulator of ribonuclease activity B; InterPro: IPR009671 This entry occurs in several hypothetical bacterial proteins of around 120 residues in length. The function of these proteins is unknown. The protein structure has been determined for one member of this group, the hypothetical protein VCO424 from Vibrio cholerae; it has an alpha+beta sandwich fold.; PDB: 1NXI_A.
Probab=27.41 E-value=1.6e+02 Score=22.63 Aligned_cols=76 Identities=14% Similarity=0.024 Sum_probs=43.0
Q ss_pred ccEEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHhhhhcccc
Q 023530 41 THGIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFFKLSKMFNAMR 117 (281)
Q Consensus 41 ~~~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~~la~~l~l~~ 117 (281)
...-..+..+|.. -..+++..+.+.|..|...........+.|...+....+....+..++...|..+|+++|...
T Consensus 24 r~ieh~~~f~~~~-~~~~f~~~~~~~g~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~I~~~~~~l~~lA~~~~g~Y 99 (104)
T PF06877_consen 24 RPIEHWFYFEDEE-DAEKFAEELEKLGYEVESAEEDEEDGDGPYCLDISREMVLDYEDINAITQELEDLAKEFGGEY 99 (104)
T ss_dssp EEEEEEEEES-HH-HHHHHHHHHHHHS---B----B-SS-SSBEEEEEEEEE-S-HHHHHHHHHHHHHHHHHHT-EE
T ss_pred eEEEEEEEeCCHH-HHHHHHHHHHHCCCEEEEeecccCCCCceEEEEEEEecCCCHHHHHHHHHHHHHHHHHhCcEe
Confidence 3444556665554 578888899999999777654222234566666665543323456788889999999998653
No 469
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=27.37 E-value=4e+02 Score=25.44 Aligned_cols=52 Identities=12% Similarity=0.243 Sum_probs=29.4
Q ss_pred EEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHH---HhCCCCEEEeC
Q 023530 133 VLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFL---ERHGIPYHYLC 188 (281)
Q Consensus 133 vl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A---~~~gIP~~~i~ 188 (281)
|+.-+..+.+.+++...+... ..+..+++- .+|.-.+...| +++|||+..+.
T Consensus 123 IlTh~~S~~v~~~l~~A~~~~--k~~~V~VtE--SRP~~eG~~~ak~L~~~gI~~~~I~ 177 (301)
T COG1184 123 ILTHSFSKTVLEVLKTAADRG--KRFKVIVTE--SRPRGEGRIMAKELRQSGIPVTVIV 177 (301)
T ss_pred EEEecCcHHHHHHHHHhhhcC--CceEEEEEc--CCCcchHHHHHHHHHHcCCceEEEe
Confidence 444446677777766544322 235555552 23443444444 57799999986
No 470
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=27.34 E-value=2.5e+02 Score=25.92 Aligned_cols=46 Identities=15% Similarity=0.106 Sum_probs=24.0
Q ss_pred eeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCC
Q 023530 129 YKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIP 183 (281)
Q Consensus 129 ~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP 183 (281)
+||+|++.|. |..+-..+.. .|. ..+|. +.++ +....+.+++.|+.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~--~g~-~~~V~--~~dr----~~~~~~~a~~~g~~ 53 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRR--LGL-AGEIV--GADR----SAETRARARELGLG 53 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHh--cCC-CcEEE--EEEC----CHHHHHHHHhCCCC
Confidence 5899999988 4444332322 231 22443 3333 11235667777764
No 471
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=27.33 E-value=3.2e+02 Score=26.78 Aligned_cols=48 Identities=13% Similarity=0.098 Sum_probs=27.1
Q ss_pred eCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHH----HHHHhCCCCEEEeC
Q 023530 136 SKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVI----RFLERHGIPYHYLC 188 (281)
Q Consensus 136 Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~----~~A~~~gIP~~~i~ 188 (281)
+|.|+.+.-|..+.+.|. .+..+++ +.+|...+. ....+.|||+..+.
T Consensus 183 ~g~gtal~~i~~a~~~gk---~f~V~v~--EsRP~~qG~rlta~eL~~~GIpvtlI~ 234 (363)
T PRK05772 183 TGLGTALAPVKLAKALGM---SVSVIAP--ETRPWLQGSRLTVYELMEEGIKVTLIT 234 (363)
T ss_pred cccccHHHHHHHHHHCCC---eEEEEEC--CCCccchhHHHHHHHHHHCCCCEEEEe
Confidence 344677777776666664 3443333 333432221 22356899999986
No 472
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=27.32 E-value=82 Score=23.86 Aligned_cols=51 Identities=24% Similarity=0.444 Sum_probs=30.0
Q ss_pred HHHHhhhcCCCCeeEEEEEeCCCCCCCh--h-HHHHHHhCCCCEEEeCCCCCChHHHHHHHHh
Q 023530 144 DFLYGWQEGKLPVEITCVISNHDRGPNS--H-VIRFLERHGIPYHYLCAKENEREEELLELVQ 203 (281)
Q Consensus 144 aLl~~~~~g~l~~eI~~Visn~pd~~~a--~-~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~ 203 (281)
...+.++.|+ +..+.+-.|-+ ++. . ...+|++++||++.+++ -++|-+++-
T Consensus 22 ~v~k~l~~~~--~~lvilA~d~~--~~~~~~~l~~~c~~~~Ip~~~~~s-----~~eLG~~~g 75 (95)
T PF01248_consen 22 EVLKALKKGK--AKLVILAEDCS--PDSIKKHLPALCEEKNIPYVFVPS-----KEELGRACG 75 (95)
T ss_dssp HHHHHHHTTC--ESEEEEETTSS--SGHHHHHHHHHHHHTTEEEEEESH-----HHHHHHHTT
T ss_pred HHHHHHHcCC--CcEEEEcCCCC--hhhhcccchhheeccceeEEEECC-----HHHHHHHHC
Confidence 3444445563 45555555542 222 2 45689999999999862 135666665
No 473
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=27.18 E-value=3.3e+02 Score=24.88 Aligned_cols=15 Identities=7% Similarity=0.126 Sum_probs=10.8
Q ss_pred CeeEEEEeeCC-hhHH
Q 023530 128 KYKVAVLASKQ-EHCL 142 (281)
Q Consensus 128 ~~rIavl~Sg~-GsnL 142 (281)
|+||+|++.|. |..+
T Consensus 1 m~~I~iIG~G~mG~al 16 (277)
T PRK06928 1 MEKIGFIGYGSMADMI 16 (277)
T ss_pred CCEEEEECccHHHHHH
Confidence 45899999887 4433
No 474
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=26.99 E-value=1.7e+02 Score=26.55 Aligned_cols=16 Identities=13% Similarity=0.391 Sum_probs=10.0
Q ss_pred HHHHHHhCCCCEEEeC
Q 023530 173 VIRFLERHGIPYHYLC 188 (281)
Q Consensus 173 ~~~~A~~~gIP~~~i~ 188 (281)
+.+.+++++|++...+
T Consensus 209 l~~~ik~~~v~~if~e 224 (266)
T cd01018 209 LIDLAKEKGVRVVFVQ 224 (266)
T ss_pred HHHHHHHcCCCEEEEc
Confidence 4555666777766654
No 475
>COG4080 SpoU rRNA Methylase family enzyme [General function prediction only]
Probab=26.99 E-value=1.1e+02 Score=26.10 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=27.1
Q ss_pred HHHHHHhCCCCEEEeCCCCCChHHHHHHHHh--CCCEEEEec
Q 023530 173 VIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLAR 212 (281)
Q Consensus 173 ~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~--~~DlIVLAg 212 (281)
+.+.|.+.|.|+.+++ ++.++++ +||.+.++|
T Consensus 48 ~~kla~k~G~~vlvf~--------dL~DAlevL~P~v~ll~~ 81 (147)
T COG4080 48 VLKLAFKLGKPVLVFP--------DLDDALEVLRPDVTLLVG 81 (147)
T ss_pred HHHHHHHhCCcEEEeh--------hHHHHHHhcCCceEEEec
Confidence 6789999999999986 3667777 999999985
No 476
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=26.96 E-value=3.3e+02 Score=21.96 Aligned_cols=37 Identities=8% Similarity=0.194 Sum_probs=19.2
Q ss_pred CCCCeeEEEEEeCCCCCCC------------hhHHHHHHhCCCCEEEeC
Q 023530 152 GKLPVEITCVISNHDRGPN------------SHVIRFLERHGIPYHYLC 188 (281)
Q Consensus 152 g~l~~eI~~Visn~pd~~~------------a~~~~~A~~~gIP~~~i~ 188 (281)
.+...++++++.++++... ....+.+++++|.-.++.
T Consensus 100 ~~~g~~vvg~~d~~~~~~~~~~~~~~~lg~~~~l~~~~~~~~id~v~ia 148 (175)
T PF13727_consen 100 PRLGYRVVGFVDDDPSDRGPEIDGVPVLGDLDDLPELVREHDIDEVIIA 148 (175)
T ss_dssp -SSSEEEEEEE-S-GGGTT-EETTEEEE--GGGHHHHHHHHT--EEEE-
T ss_pred hhcCceEEEEEeCchhhccCcccCceeEcCHHHHHHHHHhCCCCEEEEE
Confidence 4556899999998743110 235666677777766554
No 477
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=26.87 E-value=1.3e+02 Score=28.26 Aligned_cols=123 Identities=8% Similarity=-0.047 Sum_probs=62.5
Q ss_pred cCCCCeEEEEEEEEeCCCCCCHHHHHHH-HHHHhhhhcccceeeeecCCCCCeeEEEEeeCCh--hHHHHHHHhhhcCCC
Q 023530 78 PEKKNVFYSRSEFIFDPIKWPREQMDED-FFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE--HCLVDFLYGWQEGKL 154 (281)
Q Consensus 78 ~~~~g~F~mrlev~~p~~~~~~~~L~~~-L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~G--snL~aLl~~~~~g~l 154 (281)
++.+|.....++. ..+..+|.+ ...++-++ + . ....+++|+++|.- +.++++..- .
T Consensus 82 d~~TG~p~Almd~------~~lT~~RTaA~salaa~~-l-------~--~da~~l~iiGaG~QA~~~~~a~~~v-~---- 140 (301)
T PRK06407 82 DVNNPELVAIFEA------NRLGQIRTGAVTAYATSI-L-------H--KNVENFTIIGSGFQAETQLEGMASV-Y---- 140 (301)
T ss_pred ECCCCCEEEEEcc------chHHHHHHHHHHHHHHHH-h-------h--cCCcEEEEECCcHHHHHHHHHHHhc-C----
Confidence 3456765544422 246677773 33334332 1 1 23568999999983 455555542 1
Q ss_pred CeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHhCCCEEEEecccc--cCChhHHhhhcCCcee
Q 023530 155 PVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQ--PVPLQKEAYLGYKLLE 231 (281)
Q Consensus 155 ~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~~~DlIVLAgYMr--ILs~~fl~~~~~riIN 231 (281)
+.+=+.|.+-.+++..+.+.++.++.|+++..++ + ..+.++++|+|+.|---+ ++..+.++ ++--||
T Consensus 141 ~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~----~----~~eav~~aDIV~taT~s~~P~~~~~~l~--pg~hV~ 209 (301)
T PRK06407 141 NPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVD----N----AEAALRDADTITSITNSDTPIFNRKYLG--DEYHVN 209 (301)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeC----C----HHHHHhcCCEEEEecCCCCcEecHHHcC--CCceEE
Confidence 2333334443321101122233334588877764 1 225556899999875433 23333333 355666
No 478
>PRK00074 guaA GMP synthase; Reviewed
Probab=26.83 E-value=2.1e+02 Score=29.11 Aligned_cols=57 Identities=23% Similarity=0.208 Sum_probs=37.3
Q ss_pred CeeEEEEeeCCh--hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCC---hhHH-HHHHhCCCCEEEeC
Q 023530 128 KYKVAVLASKQE--HCLVDFLYGWQEGKLPVEITCVISNHDRGPN---SHVI-RFLERHGIPYHYLC 188 (281)
Q Consensus 128 ~~rIavl~Sg~G--snL~aLl~~~~~g~l~~eI~~Visn~pd~~~---a~~~-~~A~~~gIP~~~i~ 188 (281)
..|++|..||+- +.+-.++... -| .++.+|..|+.-.+. ..+. ..|+++|||+++++
T Consensus 215 ~~~vlva~SGGvDS~vll~ll~~~-lg---~~v~av~vd~g~~~~~e~~~~~~~~a~~lgi~~~vvd 277 (511)
T PRK00074 215 DKKVILGLSGGVDSSVAAVLLHKA-IG---DQLTCVFVDHGLLRKNEAEQVMEMFREHFGLNLIHVD 277 (511)
T ss_pred CCcEEEEeCCCccHHHHHHHHHHH-hC---CceEEEEEeCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 368999999983 4444454432 14 368888888753221 1234 36799999999987
No 479
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.58 E-value=1.4e+02 Score=26.35 Aligned_cols=31 Identities=16% Similarity=0.368 Sum_probs=23.2
Q ss_pred eEEEEEeCCCCCCC------hhHHHHHHhCCCCEEEeC
Q 023530 157 EITCVISNHDRGPN------SHVIRFLERHGIPYHYLC 188 (281)
Q Consensus 157 eI~~Visn~pd~~~------a~~~~~A~~~gIP~~~i~ 188 (281)
+|+ ++.|+.|+++ ..+.++|+++|||++--+
T Consensus 126 Div-lcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETS 162 (219)
T KOG0081|consen 126 DIV-LCGNKADLEDQRVVSEDQAAALADKYGLPYFETS 162 (219)
T ss_pred CEE-EEcCccchhhhhhhhHHHHHHHHHHhCCCeeeec
Confidence 455 4567766654 457889999999999876
No 480
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=26.57 E-value=2.9e+02 Score=24.88 Aligned_cols=117 Identities=17% Similarity=0.113 Sum_probs=60.4
Q ss_pred chHHHHHHHHHhCCCeEeEeeeeccC-CCCe---------------EE---------EEEEEEeCCCCCCHHHHHHHHHH
Q 023530 54 GIVAKLSECIASRGGNILAADVFVPE-KKNV---------------FY---------SRSEFIFDPIKWPREQMDEDFFK 108 (281)
Q Consensus 54 GIVa~VS~~La~~giNI~dl~q~~~~-~~g~---------------F~---------mrlev~~p~~~~~~~~L~~~L~~ 108 (281)
....+.-..+.++|+++...++..|. ..|. |. +-....+|. +.+.++|.+.+.+
T Consensus 75 ~~~~~~~~~li~~~I~vy~~Ht~lD~~~~G~n~~La~~Lgl~~~~~~~~~~~~~~~g~g~i~~l~~-~~s~~el~~~vk~ 153 (241)
T PF01784_consen 75 DYKGKIIEKLIKNGISVYSAHTNLDAAPGGVNDYLAKKLGLENIKPLDPSKSGEGYGLGRIGELPE-PMSLEELAERVKE 153 (241)
T ss_dssp SHHHHHHHHHHHTT-EEEEESHHHHHSTTSHHHHHHHHHTEEEEEEEEEEEEEEEEECEEEEEEEE-EEEHHHHHHHHHH
T ss_pred chhhHHHHHHHHCCCEEEEecccccccCcCHHHHHHHHhCCCCccccccccccccceeeeEeecCC-CCCHHHHHHHHHH
Confidence 45677777888888888888776531 1121 11 112234543 3566666666554
Q ss_pred Hhhhhcccceeeeec-CCCCC-eeEEEEeeCChh-HHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEE
Q 023530 109 LSKMFNAMRSVVRVP-DIDPK-YKVAVLASKQEH-CLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYH 185 (281)
Q Consensus 109 la~~l~l~~~~~~~~-~~~~~-~rIavl~Sg~Gs-nL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~ 185 (281)
.++++. +++. ....+ .||| +++|.|. .+....+ .| ++ +.||=. -.-.....|++.|+.+.
T Consensus 154 ---~l~~~~--vr~~g~~~~~v~rVa-v~~GsG~~~i~~a~~---~g---~D--~~ITGd---~~~h~~~~a~~~g~~lI 216 (241)
T PF01784_consen 154 ---KLGLPG--VRVVGDPDKKVKRVA-VCGGSGGSFIEEAAE---AG---AD--VYITGD---IKYHDAQDAKENGINLI 216 (241)
T ss_dssp ---HTTSS---EEEESCTTSEEEEEE-EECSSSGGGHHHHHH---TT---SS--EEEESS-----HHHHHHHHHCTSEEE
T ss_pred ---HcCCCc--EEecCCCCCcccEEE-EEcccCccHHHHHHh---CC---Ce--EEEEcc---CcHHHHHHHHHCCCEEE
Confidence 556653 3443 33333 5778 5556664 3332222 23 23 344421 12234667899999988
Q ss_pred EeC
Q 023530 186 YLC 188 (281)
Q Consensus 186 ~i~ 188 (281)
.+.
T Consensus 217 ~~g 219 (241)
T PF01784_consen 217 DAG 219 (241)
T ss_dssp E--
T ss_pred EcC
Confidence 876
No 481
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=26.55 E-value=1.7e+02 Score=26.70 Aligned_cols=70 Identities=16% Similarity=0.254 Sum_probs=34.4
Q ss_pred EEEEeeCChhHHHHH-HHhhhcCCCCeeEEEEEeCCCCCCChhHHHHH---HhCCCCEEEeCCCCCChHHHHHHHHhC-C
Q 023530 131 VAVLASKQEHCLVDF-LYGWQEGKLPVEITCVISNHDRGPNSHVIRFL---ERHGIPYHYLCAKENEREEELLELVQN-T 205 (281)
Q Consensus 131 Iavl~Sg~GsnL~aL-l~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A---~~~gIP~~~i~~k~~~~e~~l~~~L~~-~ 205 (281)
-.||.-|..+.+... ..+++.|. ..+|. |.=.+ |...++..| .+.|||+.+++. ..+...+++ +
T Consensus 109 ~~ILT~~~S~~v~~~l~~a~~~~~-~~~V~-v~es~---P~~eG~~~a~~L~~~gi~v~~i~d------~~~~~~m~~~v 177 (282)
T PF01008_consen 109 DTILTHGYSSTVERFLLSAKKKGK-KFRVI-VLESR---PYNEGRLMAKELAEAGIPVTLIPD------SAVGYVMPRDV 177 (282)
T ss_dssp EEEEEES--SHHHHHHHHHHHTTE-EEEEE-EE--T---TTTHHHTHHHHHHHTT-EEEEE-G------GGHHHHHHCTE
T ss_pred eEEEEeCCchHHHHHHHHHHHcCC-eEEEE-EccCC---cchhhhhHHHHhhhcceeEEEEec------hHHHHHHHHhC
Confidence 455666665555554 44455453 23332 33333 444444444 456999999872 234555565 7
Q ss_pred CEEEEe
Q 023530 206 DFLVLA 211 (281)
Q Consensus 206 DlIVLA 211 (281)
|.|++.
T Consensus 178 d~VliG 183 (282)
T PF01008_consen 178 DKVLIG 183 (282)
T ss_dssp SEEEEE
T ss_pred CeeEEe
Confidence 777764
No 482
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=26.45 E-value=1.1e+02 Score=24.11 Aligned_cols=49 Identities=12% Similarity=0.163 Sum_probs=29.0
Q ss_pred HHHHHHhCCCCEEEeCCCCCChHHHHHHHHhCCCEEEEecccccCChhHHhhh
Q 023530 173 VIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQKEAYL 225 (281)
Q Consensus 173 ~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~~~DlIVLAgYMrILs~~fl~~~ 225 (281)
..+.|+++|+++.+... ...++.+.+++.|+|+++-=.+..-+++-+..
T Consensus 20 m~~~a~~~gi~~~i~a~----~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~ 68 (99)
T cd05565 20 LNKGAKERGVPLEAAAG----AYGSHYDMIPDYDLVILAPQMASYYDELKKDT 68 (99)
T ss_pred HHHHHHHCCCcEEEEEe----eHHHHHHhccCCCEEEEcChHHHHHHHHHHHh
Confidence 56788888888776431 12334455557888888755444444444443
No 483
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=26.39 E-value=3.2e+02 Score=27.17 Aligned_cols=56 Identities=16% Similarity=0.239 Sum_probs=34.2
Q ss_pred eEEEEEeCC----CCCCChhHHHHHHhCCCCEEEeCCCCC--ChHHHHHHHHh-CCCEEEEec
Q 023530 157 EITCVISNH----DRGPNSHVIRFLERHGIPYHYLCAKEN--EREEELLELVQ-NTDFLVLAR 212 (281)
Q Consensus 157 eI~~Visn~----pd~~~a~~~~~A~~~gIP~~~i~~k~~--~~e~~l~~~L~-~~DlIVLAg 212 (281)
-+.-|.+-| .+.+-..+.+.|+++|+|+++=..... +.|..+-+.++ ++|||+-.|
T Consensus 159 ~llkV~s~~~~f~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~GaDLV~~Sg 221 (395)
T COG1921 159 LLLKVHSSNYGFTGMLSEEELVEIAHEKGLPVIVDLASGALVDKEPDLREALALGADLVSFSG 221 (395)
T ss_pred eEEEEeeccccccccccHHHHHHHHHHcCCCEEEecCCccccccccchhHHHhcCCCEEEEec
Confidence 344455543 223335678899999999998222111 12334556777 899998764
No 484
>PRK06270 homoserine dehydrogenase; Provisional
Probab=26.38 E-value=3.7e+02 Score=25.55 Aligned_cols=36 Identities=11% Similarity=0.205 Sum_probs=22.2
Q ss_pred CeeEEEEeeCC-hhHHHHHHHhhh-----cCCCCeeEEEEEe
Q 023530 128 KYKVAVLASKQ-EHCLVDFLYGWQ-----EGKLPVEITCVIS 163 (281)
Q Consensus 128 ~~rIavl~Sg~-GsnL~aLl~~~~-----~g~l~~eI~~Vis 163 (281)
+.||++++.|+ |+.+-.++...+ .-.+..+|++|..
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d 43 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIAD 43 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEe
Confidence 46899999987 555555554321 1123478888866
No 485
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=26.30 E-value=4.6e+02 Score=23.18 Aligned_cols=78 Identities=18% Similarity=0.069 Sum_probs=49.2
Q ss_pred eeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHh--CCCEEEEecccccCChhHHhhhcC----Cc
Q 023530 156 VEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQ--NTDFLVLARYMQPVPLQKEAYLGY----KL 229 (281)
Q Consensus 156 ~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~--~~DlIVLAgYMrILs~~fl~~~~~----ri 229 (281)
.+|.+++|-|- -...+++++.|++++.-+ ...+.+.+...++ ..=++|+..=+-++.+.+++..-. .+
T Consensus 42 d~i~v~isp~t----p~t~~~~~~~gv~vi~tp--G~GYv~Dl~~al~~l~~P~lvvsaDLp~l~~~~i~~vi~~~~~~~ 115 (177)
T COG2266 42 DEIIVAISPHT----PKTKEYLESVGVKVIETP--GEGYVEDLRFALESLGTPILVVSADLPFLNPSIIDSVIDAAASVE 115 (177)
T ss_pred CcEEEEeCCCC----HhHHHHHHhcCceEEEcC--CCChHHHHHHHHHhcCCceEEEecccccCCHHHHHHHHHHHhhcc
Confidence 46777777542 135778999998888754 2235666777777 445777777777888887665432 22
Q ss_pred ee-ccCCCCCC
Q 023530 230 LE-SLSSKGSL 239 (281)
Q Consensus 230 IN-SLLP~f~G 239 (281)
.+ +++|..+.
T Consensus 116 ~p~~~~~~~G~ 126 (177)
T COG2266 116 VPIVTVVKAGR 126 (177)
T ss_pred CceeEeeccCc
Confidence 33 55555443
No 486
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=26.23 E-value=4.2e+02 Score=22.70 Aligned_cols=71 Identities=14% Similarity=0.141 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhhhhcccceeeeecCCCCCeeEEEEeeCCh-hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHH
Q 023530 99 REQMDEDFFKLSKMFNAMRSVVRVPDIDPKYKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFL 177 (281)
Q Consensus 99 ~~~L~~~L~~la~~l~l~~~~~~~~~~~~~~rIavl~Sg~G-snL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A 177 (281)
...+.+.+++.++++|.+ +.++.++.. ......++...... +-+||-..++ .+...++.+
T Consensus 14 ~~~~~~~i~~~a~~~g~~--------------~~~~~~~~~~~~~~~~~~~l~~~~----~dgiii~~~~-~~~~~l~~~ 74 (267)
T cd06283 14 SSLVLKGIEDVCRAHGYQ--------------VLVCNSDNDPEKEKEYLESLLAYQ----VDGLIVNPTG-NNKELYQRL 74 (267)
T ss_pred HHHHHHHHHHHHHHcCCE--------------EEEEcCCCCHHHHHHHHHHHHHcC----cCEEEEeCCC-CChHHHHHH
Confidence 567888888888887643 122222222 22233444333332 2222222122 233456788
Q ss_pred HhCCCCEEEeC
Q 023530 178 ERHGIPYHYLC 188 (281)
Q Consensus 178 ~~~gIP~~~i~ 188 (281)
++.|||+..+.
T Consensus 75 ~~~~ipvV~~~ 85 (267)
T cd06283 75 AKNGKPVVLVD 85 (267)
T ss_pred hcCCCCEEEEc
Confidence 89999999987
No 487
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=26.20 E-value=2.2e+02 Score=25.50 Aligned_cols=67 Identities=16% Similarity=0.218 Sum_probs=34.3
Q ss_pred eeEEEEeeCC-h-hHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCC-CCEEEeCCCCCChHHHHHHHHhCC
Q 023530 129 YKVAVLASKQ-E-HCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHG-IPYHYLCAKENEREEELLELVQNT 205 (281)
Q Consensus 129 ~rIavl~Sg~-G-snL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~g-IP~~~i~~k~~~~e~~l~~~L~~~ 205 (281)
+||+|++.|. | +-...|+. .|. ..+ ...++|+ ......+++++++ +. ..+ + ..++++++
T Consensus 1 m~IgiIG~G~mG~aia~~L~~---~g~-~~~-~i~v~~r---~~~~~~~l~~~~~~~~--~~~----~----~~~~~~~a 62 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLT---SPA-DVS-EIIVSPR---NAQIAARLAERFPKVR--IAK----D----NQAVVDRS 62 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHh---CCC-Chh-eEEEECC---CHHHHHHHHHHcCCce--EeC----C----HHHHHHhC
Confidence 3799999997 4 33344443 232 111 2345665 2233455566553 32 111 1 11334478
Q ss_pred CEEEEecc
Q 023530 206 DFLVLARY 213 (281)
Q Consensus 206 DlIVLAgY 213 (281)
|+|++|=-
T Consensus 63 DvVilav~ 70 (258)
T PRK06476 63 DVVFLAVR 70 (258)
T ss_pred CEEEEEeC
Confidence 99998844
No 488
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase. This bifunctional isomerase is a member of the larger PGI superfamily and only distantly related to other glucose-6-phosphate isomerases. The family is limited to the archaea.
Probab=26.01 E-value=1.3e+02 Score=28.52 Aligned_cols=52 Identities=4% Similarity=0.025 Sum_probs=32.1
Q ss_pred eeEEEEeeCChhHHH--HHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeC
Q 023530 129 YKVAVLASKQEHCLV--DFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLC 188 (281)
Q Consensus 129 ~rIavl~Sg~GsnL~--aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~ 188 (281)
.-+.|.+|.+|...+ ..++..++. .+.++++ |+. .+..+.|+++|.++..+|
T Consensus 67 ~dlvI~iS~SG~t~e~~~a~~~A~~~--g~~ii~i-T~~-----g~L~~~a~~~~~~~i~vP 120 (308)
T TIGR02128 67 KTLLIAVSYSGNTEETLSAVEEAKKK--GAKVIAI-TSG-----GRLEEMAKERGLDVIKIP 120 (308)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHc--CCEEEEE-CCC-----cHHHHHHHhcCCeEEEcC
Confidence 358888998883322 223332222 3566544 432 157889999999998887
No 489
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=25.93 E-value=2.8e+02 Score=22.03 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=17.9
Q ss_pred eeEEEEeeCCh-hHHHHHHHhhhcCCCCeeEEEEEeC
Q 023530 129 YKVAVLASKQE-HCLVDFLYGWQEGKLPVEITCVISN 164 (281)
Q Consensus 129 ~rIavl~Sg~G-snL~aLl~~~~~g~l~~eI~~Visn 164 (281)
|||.|++||.- | +|.+++.+...-.+|.+.-.|
T Consensus 1 MkVLviGsGgREH---Aia~~l~~s~~v~~v~~aPGN 34 (100)
T PF02844_consen 1 MKVLVIGSGGREH---AIAWKLSQSPSVEEVYVAPGN 34 (100)
T ss_dssp EEEEEEESSHHHH---HHHHHHTTCTTEEEEEEEE--
T ss_pred CEEEEECCCHHHH---HHHHHHhcCCCCCEEEEeCCC
Confidence 68999999853 5 455555444322344444444
No 490
>PRK01215 competence damage-inducible protein A; Provisional
Probab=25.82 E-value=2.1e+02 Score=26.47 Aligned_cols=11 Identities=9% Similarity=0.147 Sum_probs=9.2
Q ss_pred CeeEEEEeeCC
Q 023530 128 KYKVAVLASKQ 138 (281)
Q Consensus 128 ~~rIavl~Sg~ 138 (281)
++|++|+.+|.
T Consensus 3 ~~~v~Ii~~Gd 13 (264)
T PRK01215 3 KWFAWIITIGN 13 (264)
T ss_pred CCEEEEEEECh
Confidence 57899999886
No 491
>PF02092 tRNA_synt_2f: Glycyl-tRNA synthetase beta subunit; InterPro: IPR015944 The aminoacyl-tRNA synthetases (6.1.1 from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold and are mostly monomeric, while class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet formation, flanked by alpha-helices [], and are mostly dimeric or multimeric. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic aci, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. The 10 class I synthetases are considered to have in common the catalytic domain structure based on the Rossmann fold, which is totally different from the class II catalytic domain structure. The class I synthetases are further divided into three subclasses, a, b and c, according to sequence homology. No conserved structural features for tRNA recognition by class I synthetases have been established. Class-II tRNA synthetases do not share a high degree of similarity, however at least three conserved regions are present [, , ]. In most eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ] while in archaea, eukaryota and some eubacteria, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). This entry represents the beta subunit of the tetrameric enzyme. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha (see IPR002310 from INTERPRO) and beta subunits also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the beta subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm
Probab=25.68 E-value=2.1e+02 Score=29.62 Aligned_cols=116 Identities=13% Similarity=0.107 Sum_probs=68.1
Q ss_pred CCCCCcccEEEEEEcC------CCcch-HHHHHHHHHhCCCeEeEeeeeccCCCCeEEEEEEEEeCCCCCCHHHHHHHHH
Q 023530 35 SVSPTLTHGIHVFHCP------DEVGI-VAKLSECIASRGGNILAADVFVPEKKNVFYSRSEFIFDPIKWPREQMDEDFF 107 (281)
Q Consensus 35 ~~~~~~~~~iltV~G~------DrpGI-Va~VS~~La~~giNI~dl~q~~~~~~g~F~mrlev~~p~~~~~~~~L~~~L~ 107 (281)
+-++.+......+.|| |..|- -.+.-+|+.++|+++.++...... .|.|. -.....+. .-..+-|.+.+.
T Consensus 55 ~l~~~q~d~~~~~~GP~~~~a~d~~G~pt~A~~gFak~~gv~~~~l~~~~~~-kg~y~-~~~~~~~g-~~~~~iL~~il~ 131 (548)
T PF02092_consen 55 GLAEKQPDREEEVKGPPVKIAFDADGNPTKAAEGFAKSQGVSVEDLEIKETN-KGEYL-FARKKIKG-RPTKEILPEILP 131 (548)
T ss_pred CccccCccchheeeCCcHHHhcCcCCCccHHHHHHHHHcCCCHHHhEEEEeC-CEeEE-EEEEEECC-ccHHHHHHHHHH
Confidence 3344445566677787 44443 567778888999999998876443 44443 23333333 224455666776
Q ss_pred HHhhhhcccceeeeecCCCCCeeEE---EEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCC
Q 023530 108 KLSKMFNAMRSVVRVPDIDPKYKVA---VLASKQEHCLVDFLYGWQEGKLPVEITCVISNHD 166 (281)
Q Consensus 108 ~la~~l~l~~~~~~~~~~~~~~rIa---vl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~p 166 (281)
.+-..+.. .++||.+ +-....-+++-+|++ +.-++.++.+|-||+-
T Consensus 132 ~~i~~l~~----------pK~MrWg~~~~~F~RPirwi~aL~~---~~vi~~~~~gi~s~~~ 180 (548)
T PF02092_consen 132 QIIKSLPF----------PKSMRWGDGDFRFIRPIRWIVALLG---DEVIPFEIFGIKSGNT 180 (548)
T ss_pred HHHHcCCC----------CCccccCCCCCEEechHHHHHHHcC---CceeEEEEccEeeCce
Confidence 66665542 3334443 011111377777776 3456788999999874
No 492
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=25.66 E-value=2e+02 Score=23.21 Aligned_cols=77 Identities=9% Similarity=0.083 Sum_probs=38.9
Q ss_pred HHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHhCCCEEEEecccccCChhH
Q 023530 142 LVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNTDFLVLARYMQPVPLQK 221 (281)
Q Consensus 142 L~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~~~DlIVLAgYMrILs~~f 221 (281)
.++++.+...+.+.+.=+++..-....++..+.+.++++||+......+. . + +.+++.|+||...--+. ..+
T Consensus 15 AEa~~~~~~~~~~~v~SAG~~~~~g~~~~~~a~~~l~~~Gid~~~~~~~l-~-~----~~~~~~DlIv~m~~~~~--~~~ 86 (140)
T smart00226 15 AEALFKAIVGDRVKIDSAGTGAWVGGGADPRAVEVLKEHGIALSHHASQL-T-S----SDFKNADLVLAMDHSHL--RNI 86 (140)
T ss_pred HHHHHHHhcCCCEEEEcCcccCCCCCCCCHHHHHHHHHcCcCccceeccC-C-H----HHHHhCCEEEEeCHHHH--HHH
Confidence 45555543333333333444311111156678999999999864322211 1 1 23348999998754322 234
Q ss_pred Hhhhc
Q 023530 222 EAYLG 226 (281)
Q Consensus 222 l~~~~ 226 (281)
+..|+
T Consensus 87 ~~~~p 91 (140)
T smart00226 87 CRLKP 91 (140)
T ss_pred HHHcc
Confidence 44444
No 493
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=25.59 E-value=7.4e+02 Score=25.35 Aligned_cols=162 Identities=16% Similarity=0.193 Sum_probs=81.3
Q ss_pred EEEEEEcCCCcchHHHHHHHHHhCCCeEeEeeeecc-CCCCeEEEEEEEEeCCCCCCHHHH--HHHHHHHhhhhcccce-
Q 023530 43 GIHVFHCPDEVGIVAKLSECIASRGGNILAADVFVP-EKKNVFYSRSEFIFDPIKWPREQM--DEDFFKLSKMFNAMRS- 118 (281)
Q Consensus 43 ~iltV~G~DrpGIVa~VS~~La~~giNI~dl~q~~~-~~~g~F~mrlev~~p~~~~~~~~L--~~~L~~la~~l~l~~~- 118 (281)
..++..-+-. =.++.+.|.++|++.+.++.--. ...+. +.+-. +..++ ..+..+.+..++-..-
T Consensus 88 ~li~~l~p~~---~~~l~~~l~~~~it~ia~e~vpr~sraq~----~d~ls-----sma~IAGy~Av~~aa~~~~~~~~g 155 (509)
T PRK09424 88 TLVSFIWPAQ---NPELLEKLAARGVTVLAMDAVPRISRAQS----LDALS-----SMANIAGYRAVIEAAHEFGRFFTG 155 (509)
T ss_pred EEEEEeCccc---CHHHHHHHHHcCCEEEEeecccccccCCC----ccccc-----chhhhhHHHHHHHHHHHhcccCCC
Confidence 3444444422 37889999999999999987431 01111 11110 11111 2233333444432100
Q ss_pred eeeecCCCCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCC-CCC-----
Q 023530 119 VVRVPDIDPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA-KEN----- 192 (281)
Q Consensus 119 ~~~~~~~~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~-k~~----- 192 (281)
..-....-+..||+|++.|. --+.++.-+...| ++|.++=.+ ...++.|+++|..+..++. +..
T Consensus 156 ~~taaG~~pg~kVlViGaG~-iGL~Ai~~Ak~lG---A~V~a~D~~------~~rle~aeslGA~~v~i~~~e~~~~~~g 225 (509)
T PRK09424 156 QITAAGKVPPAKVLVIGAGV-AGLAAIGAAGSLG---AIVRAFDTR------PEVAEQVESMGAEFLELDFEEEGGSGDG 225 (509)
T ss_pred ceeccCCcCCCEEEEECCcH-HHHHHHHHHHHCC---CEEEEEeCC------HHHHHHHHHcCCeEEEeccccccccccc
Confidence 00011123467999999986 2344444443345 554433222 2458899999988776652 210
Q ss_pred -----ChH--HHHHHHH----hCCCEEEEecccc------cCChhHHhhhc
Q 023530 193 -----ERE--EELLELV----QNTDFLVLARYMQ------PVPLQKEAYLG 226 (281)
Q Consensus 193 -----~~e--~~l~~~L----~~~DlIVLAgYMr------ILs~~fl~~~~ 226 (281)
..+ ++..+.+ +++|+++-+-... .+.++.++..+
T Consensus 226 ya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mk 276 (509)
T PRK09424 226 YAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMK 276 (509)
T ss_pred hhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcC
Confidence 011 1222332 3699999987642 33455555544
No 494
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=25.50 E-value=2.9e+02 Score=25.76 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=14.7
Q ss_pred CeeEEEEeeCC-hhHHHHHHH
Q 023530 128 KYKVAVLASKQ-EHCLVDFLY 147 (281)
Q Consensus 128 ~~rIavl~Sg~-GsnL~aLl~ 147 (281)
++||+|+++|. |+.+-..+.
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~ 24 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAA 24 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHH
Confidence 56999999998 666555444
No 495
>PRK10799 metal-binding protein; Provisional
Probab=25.45 E-value=5.1e+02 Score=23.43 Aligned_cols=120 Identities=9% Similarity=-0.020 Sum_probs=64.8
Q ss_pred cchHHHHHHHHHhCCCeEeEeeeeccCC--CCeE-------EEE-------E--EEEeCCCCCCHHHHHHHHHHHhhhhc
Q 023530 53 VGIVAKLSECIASRGGNILAADVFVPEK--KNVF-------YSR-------S--EFIFDPIKWPREQMDEDFFKLSKMFN 114 (281)
Q Consensus 53 pGIVa~VS~~La~~giNI~dl~q~~~~~--~g~F-------~mr-------l--ev~~p~~~~~~~~L~~~L~~la~~l~ 114 (281)
+|...+.-+.+.+++++++..++..|.. .|.. -+. + ...++. ..+.++|.+.+. +.++
T Consensus 76 ~~~~~~~~~~li~~~i~vy~~Htn~D~~~~~G~n~~la~~Lgl~~~~~~~~~~~~g~l~~-~~s~~~l~~~vk---~~l~ 151 (247)
T PRK10799 76 RGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEPLVPWGELTM-PVPGLELASWIE---ARLG 151 (247)
T ss_pred cchHHHHHHHHHHCCCeEEEEecchhhCCCCCHHHHHHHHcCCCcccCcCCceeeEECCC-CcCHHHHHHHHH---HHhC
Confidence 4667788889999999999998877531 1310 000 0 012332 345666666554 4556
Q ss_pred ccceeeeecCC--CCCeeEEEEeeCChhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCC
Q 023530 115 AMRSVVRVPDI--DPKYKVAVLASKQEHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCA 189 (281)
Q Consensus 115 l~~~~~~~~~~--~~~~rIavl~Sg~GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~ 189 (281)
... ...... .+-+||||+ +|+|.-+ +-++.+.| +++ .||= |.+- .....|++.|+.+..+.+
T Consensus 152 ~~~--~~~~~~~~~~i~rVAi~-~GsG~~~--i~~a~~~g---aD~--~ITG--d~k~-h~~~~A~~~gl~li~~GH 215 (247)
T PRK10799 152 RKP--LWCGDTGPEVVQRVAWC-TGGGQSF--IDSAARFG---VDA--FITG--EVSE-QTIHSAREQGLHFYAAGH 215 (247)
T ss_pred CCe--EEECCCCCCcccEEEEE-CCchHHH--HHHHHHcC---CCE--EEEC--Ccch-HHHHHHHHCCCeEEEcCc
Confidence 552 122222 234689986 6666432 22222233 343 3442 1121 234568999999888764
No 496
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=25.44 E-value=1.5e+02 Score=24.06 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=26.9
Q ss_pred hHHHHHHhCCCCEEEeC-CCCCChH---HHHHHHHhCCCEEEEecccccCChh
Q 023530 172 HVIRFLERHGIPYHYLC-AKENERE---EELLELVQNTDFLVLARYMQPVPLQ 220 (281)
Q Consensus 172 ~~~~~A~~~gIP~~~i~-~k~~~~e---~~l~~~L~~~DlIVLAgYMrILs~~ 220 (281)
...++.+++|..+.... -++ +.+ +++.++++++|+|+..|=.-.=+.+
T Consensus 23 ~l~~~l~~~G~~v~~~~~v~D-d~~~i~~~i~~~~~~~DlvittGG~g~g~~D 74 (133)
T cd00758 23 ALEALLEDLGCEVIYAGVVPD-DADSIRAALIEASREADLVLTTGGTGVGRRD 74 (133)
T ss_pred HHHHHHHHCCCEEEEeeecCC-CHHHHHHHHHHHHhcCCEEEECCCCCCCCCc
Confidence 45667888887766554 221 222 2233333478999998754443333
No 497
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=25.44 E-value=4.7e+02 Score=25.24 Aligned_cols=91 Identities=14% Similarity=0.112 Sum_probs=48.4
Q ss_pred CCeeEEEEeeCC-hhHHHHHHHhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCCCCEEEeCCCCCChHHHHHHHHhCC
Q 023530 127 PKYKVAVLASKQ-EHCLVDFLYGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHGIPYHYLCAKENEREEELLELVQNT 205 (281)
Q Consensus 127 ~~~rIavl~Sg~-GsnL~aLl~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~gIP~~~i~~k~~~~e~~l~~~L~~~ 205 (281)
+..|++|++.|. |......+.+ .| ++|. + .|+ ........++.++-++.. .. ...+.+.+.++++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~--lG---a~V~-v-~d~---~~~~~~~l~~~~g~~v~~-~~---~~~~~l~~~l~~a 231 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANG--LG---ATVT-I-LDI---NIDRLRQLDAEFGGRIHT-RY---SNAYEIEDAVKRA 231 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHH--CC---CeEE-E-EEC---CHHHHHHHHHhcCceeEe-cc---CCHHHHHHHHccC
Confidence 456788887765 3333333332 24 4533 3 343 112233445566644332 11 1133566777799
Q ss_pred CEEEEecc------cccCChhHHhhhcC--Ccee
Q 023530 206 DFLVLARY------MQPVPLQKEAYLGY--KLLE 231 (281)
Q Consensus 206 DlIVLAgY------MrILs~~fl~~~~~--riIN 231 (281)
|+||-+-+ -.+++.+.++..+. -++|
T Consensus 232 DvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvD 265 (370)
T TIGR00518 232 DLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVD 265 (370)
T ss_pred CEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEE
Confidence 99998731 24677888876653 3666
No 498
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.41 E-value=4.5e+02 Score=25.13 Aligned_cols=72 Identities=19% Similarity=0.153 Sum_probs=37.9
Q ss_pred EEEeeCChhHHHHHH--HhhhcCCCCeeEEEEEeCCCCCCChhHHHHHHhCC-CCEEEeCCCCCChH--HHHHHHHh---
Q 023530 132 AVLASKQEHCLVDFL--YGWQEGKLPVEITCVISNHDRGPNSHVIRFLERHG-IPYHYLCAKENERE--EELLELVQ--- 203 (281)
Q Consensus 132 avl~Sg~GsnL~aLl--~~~~~g~l~~eI~~Visn~pd~~~a~~~~~A~~~g-IP~~~i~~k~~~~e--~~l~~~L~--- 203 (281)
.|+++|.||.|--++ +..+.| +.++++-.|.. ..-.-.+..++.| +-.++++ -.++| .++.+.++
T Consensus 40 ~vLITGgg~GlGr~ialefa~rg---~~~vl~Din~~--~~~etv~~~~~~g~~~~y~cd--is~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 40 IVLITGGGSGLGRLIALEFAKRG---AKLVLWDINKQ--GNEETVKEIRKIGEAKAYTCD--ISDREEIYRLAKKVKKEV 112 (300)
T ss_pred EEEEeCCCchHHHHHHHHHHHhC---CeEEEEecccc--chHHHHHHHHhcCceeEEEec--CCCHHHHHHHHHHHHHhc
Confidence 567888887776654 333444 57888888852 1111122333335 4445555 11233 34455555
Q ss_pred -CCCEEEE
Q 023530 204 -NTDFLVL 210 (281)
Q Consensus 204 -~~DlIVL 210 (281)
++|++|=
T Consensus 113 G~V~ILVN 120 (300)
T KOG1201|consen 113 GDVDILVN 120 (300)
T ss_pred CCceEEEe
Confidence 5787774
No 499
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=25.40 E-value=5e+02 Score=23.35 Aligned_cols=34 Identities=9% Similarity=0.002 Sum_probs=21.8
Q ss_pred eeEEEEeeCChh----HHHHHHHhhhcCCCCeeEEEEEeCC
Q 023530 129 YKVAVLASKQEH----CLVDFLYGWQEGKLPVEITCVISNH 165 (281)
Q Consensus 129 ~rIavl~Sg~Gs----nL~aLl~~~~~g~l~~eI~~Visn~ 165 (281)
.|-+|.++|.|+ ++++|..+.+.+ ..|..||-|+
T Consensus 80 ~r~VV~i~GDG~~~~m~~~eL~ta~~~~---~pv~~vVlNN 117 (235)
T cd03376 80 DITVVAFAGDGGTADIGFQALSGAAERG---HDILYICYDN 117 (235)
T ss_pred CCeEEEEEcCchHHhhHHHHHHHHHHcC---CCeEEEEECC
Confidence 345678888875 367777766654 3566666665
No 500
>COG2403 Predicted GTPase [General function prediction only]
Probab=25.28 E-value=2.2e+02 Score=28.44 Aligned_cols=77 Identities=22% Similarity=0.308 Sum_probs=44.8
Q ss_pred CCCCeeEEEEeeCC--hhHHHHHHHhhhcCCCCeeEEEE----EeCCCCC--CChhHHHHHHhCCCCEEEeCCCCCChHH
Q 023530 125 IDPKYKVAVLASKQ--EHCLVDFLYGWQEGKLPVEITCV----ISNHDRG--PNSHVIRFLERHGIPYHYLCAKENEREE 196 (281)
Q Consensus 125 ~~~~~rIavl~Sg~--GsnL~aLl~~~~~g~l~~eI~~V----isn~pd~--~~a~~~~~A~~~gIP~~~i~~k~~~~e~ 196 (281)
...++||++|+-|+ .||....++-. .+ .+++++ |-.-+++ |.+ ....-..+|||.+.- | ++ +
T Consensus 3 m~a~kRviiLgaggrdfhv~n~a~r~~--~~--yevvaf~aaqiiG~~er~ypps-leg~~~p~Gvpi~~~--k--~~-~ 72 (449)
T COG2403 3 MKARKRVIILGAGGRDFHVFNVALRDN--PE--YEVVAFTAAQIIGGTERIYPPS-LEGVLYPLGVPILPE--K--DY-D 72 (449)
T ss_pred CCCceeEEEEeccCcccchhhHHhccC--Cc--ceEEEEEEEEecCCccccCCCC-cccccccCCcccccc--c--cH-H
Confidence 35678999999887 38888776642 21 333322 2211111 111 223345789998872 2 12 3
Q ss_pred HHHHHHh--CCCEEEEe
Q 023530 197 ELLELVQ--NTDFLVLA 211 (281)
Q Consensus 197 ~l~~~L~--~~DlIVLA 211 (281)
.|-++++ ++|.+|+|
T Consensus 73 ~lek~ire~~VD~~Vla 89 (449)
T COG2403 73 DLEKIIREKDVDIVVLA 89 (449)
T ss_pred HHHHHHHHcCCCeEEEE
Confidence 5777887 89999997
Done!