BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023531
(281 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 32 IGGMLSAGTAHLAITPLDVVKVNMQV-HPIK-------YSSIASCYTNLLKEQGASAFWR 83
+ G ++A + A+ P++ VK+ +QV H K Y I C + KEQG +FWR
Sbjct: 12 LAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWR 71
Query: 84 GSAAKFFGYGAQGGCRFGLYEYFKSLY 110
G+ A Y F + +K ++
Sbjct: 72 GNLANVIRYFPTQALNFAFKDKYKQIF 98
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 14/64 (21%)
Query: 28 SICAIGGMLSAGTAHLAITPLDVVKVNMQVH------PIKYSSIASCYTNLLKEQGASAF 81
++ A+ G++S P D V+ M + I Y+ C+ + K++G AF
Sbjct: 218 TVTAVAGLVS--------YPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAF 269
Query: 82 WRGS 85
++G+
Sbjct: 270 FKGA 273
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 46 TPLDVVKVNMQVHPI-KYSSIASCYTNLLKEQGASAFWRGSAAKFFGYGAQGGCRFGLYE 104
+P+DVVK + +Y S C +L+++G AF++G F G+ F YE
Sbjct: 221 SPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYE 280
Query: 105 YFK 107
K
Sbjct: 281 QLK 283
Score = 34.3 bits (77), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 10/65 (15%)
Query: 32 IGGMLSAG--TAHLAIT---PLDVVKVNMQVHPI-----KYSSIASCYTNLLKEQGASAF 81
IG L AG T LA+ P DVVKV Q +Y S Y + +E+G
Sbjct: 104 IGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGL 163
Query: 82 WRGSA 86
W+G++
Sbjct: 164 WKGTS 168
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 49/138 (35%), Gaps = 14/138 (10%)
Query: 32 IGGMLSAGTAHLAITPLDVVKVNMQVH-----------PIKYSSIASCYTNLLKEQGASA 80
+G +A A L PLD KV +Q+ +Y + +++ +G +
Sbjct: 6 LGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRS 65
Query: 81 FWRGSAAKFFGYGAQGGCRFGLYEYFKSLYSSVLGDCXXXXXXXXXXXXXXXXXNVALC- 139
+ G A + R GLY+ K Y+ G VA+
Sbjct: 66 LYNGLVAGLQRQMSFASVRIGLYDSVKQFYTK--GSEHAGIGSRLLAGSTTGALAVAVAQ 123
Query: 140 PFEAIKVQVQAQPHFAKG 157
P + +KV+ QAQ G
Sbjct: 124 PTDVVKVRFQAQARAGGG 141
>pdb|3VK2|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK2|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant.
pdb|3VK3|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK3|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Methionine
pdb|3VK4|A Chain A, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|B Chain B, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|C Chain C, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
pdb|3VK4|D Chain D, Crystal Structure Of L-Methionine Gamma-Lyase From
Pseudomonas Putida C116h Mutant Complexed With
L-Homocysteine
Length = 398
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 171 IFGTKEDCSKTQQLGVTCIAGYAAGSFGSFISNPADNIV 209
++ T T + G C AG AG F S ISNP N++
Sbjct: 32 VYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLL 70
>pdb|1GC0|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC0|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|A Chain A, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|B Chain B, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|C Chain C, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1GC2|D Chain D, Crystal Structure Of The Pyridoxal-5'-Phosphate Dependent
L- Methionine Gamma-Lyase From Pseudomonas Putida
pdb|1UKJ|A Chain A, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|B Chain B, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|C Chain C, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|1UKJ|D Chain D, Detailed Structure Of L-Methionine-Lyase From Pseudomonas
Putida
pdb|2O7C|A Chain A, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|B Chain B, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|C Chain C, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
pdb|2O7C|D Chain D, Crystal Structure Of L-Methionine-Lyase From Pseudomonas
Length = 398
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 171 IFGTKEDCSKTQQLGVTCIAGYAAGSFGSFISNPADNIV 209
++ T T + G C AG AG F S ISNP N++
Sbjct: 32 VYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLL 70
>pdb|1PG8|A Chain A, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|B Chain B, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|C Chain C, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
pdb|1PG8|D Chain D, Crystal Structure Of L-Methionine Alpha-, Gamma-Lyase
Length = 398
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 171 IFGTKEDCSKTQQLGVTCIAGYAAGSFGSFISNPADNIV 209
++ T T + G C AG AG F S ISNP N++
Sbjct: 32 VYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLL 70
>pdb|3S25|A Chain A, Crystal Structure Of A Hypothetical 7-Bladed
Beta-Propeller-Like Protein (Eubrec_1955) From
Eubacterium Rectale Atcc 33656 At 1.88 A Resolution
Length = 302
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 13 IRLRGEEKEKVKGHY 27
IR+ GEEK+K+K HY
Sbjct: 134 IRIDGEEKKKIKNHY 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,800,143
Number of Sequences: 62578
Number of extensions: 283430
Number of successful extensions: 578
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 567
Number of HSP's gapped (non-prelim): 11
length of query: 281
length of database: 14,973,337
effective HSP length: 98
effective length of query: 183
effective length of database: 8,840,693
effective search space: 1617846819
effective search space used: 1617846819
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)