Query 023531
Match_columns 281
No_of_seqs 154 out of 1679
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 08:25:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023531.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023531hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 1.3E-49 4.5E-54 344.6 18.2 235 30-266 4-290 (303)
2 1okc_A ADP, ATP carrier protei 100.0 1.9E-47 6.4E-52 330.2 22.3 236 25-262 5-297 (297)
3 2lck_A Mitochondrial uncouplin 100.0 3E-28 1E-32 210.5 14.3 153 25-177 102-260 (303)
4 1okc_A ADP, ATP carrier protei 100.0 8.3E-28 2.8E-32 207.2 15.1 150 26-177 111-272 (297)
5 2acm_A Mucin-1; auto-catalytic 22.7 16 0.00056 22.2 -0.2 20 63-82 40-59 (66)
6 3tgu_G UQCRQ, mitochondrial ub 19.3 87 0.003 20.4 2.8 36 227-263 32-67 (81)
7 3vjj_A P9-1; 3.00A {Rice black 18.8 68 0.0023 26.3 2.6 44 196-243 273-318 (368)
8 2a3d_A Protein (de novo three- 17.6 60 0.002 19.4 1.5 26 47-72 10-35 (73)
9 1y9i_A Low temperature require 14.9 1.3E+02 0.0045 22.8 3.2 42 94-135 111-157 (178)
10 1pp9_G Ubiquinol-cytochrome C 14.4 1.2E+02 0.0042 19.7 2.6 35 227-262 32-66 (81)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.3e-49 Score=344.56 Aligned_cols=235 Identities=20% Similarity=0.293 Sum_probs=210.0
Q ss_pred HHHHHHHHHHhHhhhcchhhhhhhhheeCCC-----------CCCchHHHHHHHHHhhCccccccccHHHHHHHHhhhHH
Q 023531 30 CAIGGMLSAGTAHLAITPLDVVKVNMQVHPI-----------KYSSIASCYTNLLKEQGASAFWRGSAAKFFGYGAQGGC 98 (281)
Q Consensus 30 ~~~ag~~a~~~~~~i~~Pld~ik~~~q~~~~-----------~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~ 98 (281)
.+++|++|++++.++++|||++|+|+|++.. .|++.++++++++++||++|||||+.+++++.++.+++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999999743 57899999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCC-----CCCChhhHHHHHHHhhcCCc
Q 023531 99 RFGLYEYFKSLYSSVLGDCSRSSVFFLSSASAEVFANVALCPFEAIKVQVQAQPH-----FAKGLADGIPKLYASEGIFG 173 (281)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~v~~P~e~vk~r~q~~~~-----~y~~~~~~~~~i~~~~G~~g 173 (281)
+|.+||.+++.+.+.. +..+....+++|++||+++.++++|+|+||+|+|++.. .|.+..+++++++++||++|
T Consensus 84 ~f~~ye~~k~~~~~~~-~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~g 162 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGS-EHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRG 162 (303)
T ss_dssp TTTHHHHHHHHHSCCC-SSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHhcCC-cCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhh
Confidence 9999999999886542 24567788999999999999999999999999999853 68999999999999999988
Q ss_pred ---------------------cccc--------ccccchhhHHHHHHHHHHHHHHhhcChHHHHHHHhhccc-------h
Q 023531 174 ---------------------TKED--------CSKTQQLGVTCIAGYAAGSFGSFISNPADNIVASLYNKK-------A 217 (281)
Q Consensus 174 ---------------------~~~~--------~~~~~~~~~~~~~~~~a~~~a~~~~~Pldvi~~r~q~~~-------~ 217 (281)
.++. .....+....+++|++||++++++++|+||||+|||.+. +
T Consensus 163 lyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~~y~~~~ 242 (303)
T 2lck_A 163 LWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAG 242 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCSHH
T ss_pred hhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccccccCCHH
Confidence 1111 111334567899999999999999999999999999874 7
Q ss_pred hHHHHHHHhhchHHhhcCcchhhhHhhhhhhhHHHHHHHHHHHHhCCCC
Q 023531 218 DSLMLAVKKIGLISLFTRSLPIRIMLVGPVVTLQWFFYDTIKVLSGLPT 266 (281)
Q Consensus 218 ~~~~~i~~~eG~~~~y~~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 266 (281)
||+++|+++||++|||+ |+.++++|.+|.++++|.+||.+++.+....
T Consensus 243 ~~~~~i~~~eG~~glyr-G~~~~~~r~~p~~~i~f~~ye~~k~~l~~~~ 290 (303)
T 2lck_A 243 HCALTMLRKEGPRAFYK-GFMPSFLRLGSWNVVMFVTYEQLKRALMAAY 290 (303)
T ss_dssp HHHHHHHHSSCTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHcChHHhhc-cHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999 9999999999999999999999999886543
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.9e-47 Score=330.18 Aligned_cols=236 Identities=20% Similarity=0.311 Sum_probs=200.2
Q ss_pred hhhHHHHHHHHHHHHhHhhhcchhhhhhhhheeCC--------CCCCchHHHHHHHHHhhCccccccccHHHHHHHHhhh
Q 023531 25 GHYSICAIGGMLSAGTAHLAITPLDVVKVNMQVHP--------IKYSSIASCYTNLLKEQGASAFWRGSAAKFFGYGAQG 96 (281)
Q Consensus 25 ~~~~~~~~ag~~a~~~~~~i~~Pld~ik~~~q~~~--------~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~ 96 (281)
..++..+++|++|++++.++++|+|++|+|+|++. ..|++.++++++++++||++|||||+.+++++.++.+
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 34567889999999999999999999999999974 2578999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHhhhccCCCC----chHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCC------CCCCChhhHHHHHH
Q 023531 97 GCRFGLYEYFKSLYSSVLGDCS----RSSVFFLSSASAEVFANVALCPFEAIKVQVQAQP------HFAKGLADGIPKLY 166 (281)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ag~~ag~~~~~v~~P~e~vk~r~q~~~------~~y~~~~~~~~~i~ 166 (281)
+++|.+||.+++.+........ .....+++|++||+++.++++|+|+||+|+|++. ..|.+.++++++++
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~ 164 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIF 164 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHH
Confidence 9999999999995543222211 2356789999999999999999999999999973 35899999999999
Q ss_pred HhhcCCc---------------------ccccc------cccchhhHHHHHHHHHHHHHHhhcChHHHHHHHhhccc---
Q 023531 167 ASEGIFG---------------------TKEDC------SKTQQLGVTCIAGYAAGSFGSFISNPADNIVASLYNKK--- 216 (281)
Q Consensus 167 ~~~G~~g---------------------~~~~~------~~~~~~~~~~~~~~~a~~~a~~~~~Pldvi~~r~q~~~--- 216 (281)
++||++| .++.. ....+....+++|+++|++++++++|+||||+|||.+.
T Consensus 165 ~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~ 244 (297)
T 1okc_A 165 KSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRK 244 (297)
T ss_dssp HHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCC
Confidence 9999877 11111 11234566789999999999999999999999999763
Q ss_pred ---------hhHHHHHHHhhchHHhhcCcchhhhHhhhhhhhHHHHHHHHHHHHh
Q 023531 217 ---------ADSLMLAVKKIGLISLFTRSLPIRIMLVGPVVTLQWFFYDTIKVLS 262 (281)
Q Consensus 217 ---------~~~~~~i~~~eG~~~~y~~G~~~~~~~~~~~~~~~~~~~e~~~~~~ 262 (281)
+||+++|+++||++|||+ |+.++++|. +.+++.|.+||.+++++
T Consensus 245 ~~~~~y~~~~~~~~~i~~~eG~~glyr-G~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 245 GADIMYTGTVDCWRKIAKDEGPKAFFK-GAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp GGGCSCSSHHHHHHHHHHHHCGGGGGT-THHHHHHHH-HHHHHHHHHHHTC----
T ss_pred CCCCCCCCHHHHHHHHHHHcCcCeEec-chHHHHHhh-ccceeeehHHHHHHhhC
Confidence 689999999999999999 999999996 56789999999988754
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.95 E-value=3e-28 Score=210.50 Aligned_cols=153 Identities=17% Similarity=0.232 Sum_probs=137.7
Q ss_pred hhhHHHHHHHHHHHHhHhhhcchhhhhhhhheeCCC-----CCCchHHHHHHHHHhhCccccccccHHHHHHHHhhhHHH
Q 023531 25 GHYSICAIGGMLSAGTAHLAITPLDVVKVNMQVHPI-----KYSSIASCYTNLLKEQGASAFWRGSAAKFFGYGAQGGCR 99 (281)
Q Consensus 25 ~~~~~~~~ag~~a~~~~~~i~~Pld~ik~~~q~~~~-----~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~~ 99 (281)
......+++|++|++++.++++|+|++|+|+|++.. .|++.++++++++++||++|||||+.+++++.++.++++
T Consensus 102 ~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~ 181 (303)
T 2lck_A 102 AGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAE 181 (303)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHH
Confidence 345677899999999999999999999999999753 678999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCC-CCCCChhhHHHHHHHhhcCCccccc
Q 023531 100 FGLYEYFKSLYSSVLGDCSRSSVFFLSSASAEVFANVALCPFEAIKVQVQAQP-HFAKGLADGIPKLYASEGIFGTKED 177 (281)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~v~~P~e~vk~r~q~~~-~~y~~~~~~~~~i~~~~G~~g~~~~ 177 (281)
|.+||.+++.+.+...........+++|++||++++++++|+|+||+|+|.+. ..|.+.++|+++++++||++|.+..
T Consensus 182 f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~~y~~~~~~~~~i~~~eG~~glyrG 260 (303)
T 2lck_A 182 LVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKG 260 (303)
T ss_dssp HHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCSHHHHHHHHHHSSCTHHHHSC
T ss_pred HHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccccccCCHHHHHHHHHHHcChHHhhcc
Confidence 99999999988765434556678899999999999999999999999999984 4699999999999999999985543
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.95 E-value=8.3e-28 Score=207.17 Aligned_cols=150 Identities=17% Similarity=0.290 Sum_probs=134.6
Q ss_pred hhHHHHHHHHHHHHhHhhhcchhhhhhhhheeCC------CCCCchHHHHHHHHHhhCccccccccHHHHHHHHhhhHHH
Q 023531 26 HYSICAIGGMLSAGTAHLAITPLDVVKVNMQVHP------IKYSSIASCYTNLLKEQGASAFWRGSAAKFFGYGAQGGCR 99 (281)
Q Consensus 26 ~~~~~~~ag~~a~~~~~~i~~Pld~ik~~~q~~~------~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~~ 99 (281)
.+...+++|++|++++.++++|+|++|+|+|++. ..|++.++++++++++||++|||||+.+++++.++.++++
T Consensus 111 ~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~ 190 (297)
T 1okc_A 111 YFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAY 190 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHH
Confidence 4567789999999999999999999999999973 3578999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCC------CCCCChhhHHHHHHHhhcCCc
Q 023531 100 FGLYEYFKSLYSSVLGDCSRSSVFFLSSASAEVFANVALCPFEAIKVQVQAQP------HFAKGLADGIPKLYASEGIFG 173 (281)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~v~~P~e~vk~r~q~~~------~~y~~~~~~~~~i~~~~G~~g 173 (281)
|.+||.+++.+.+. ........+++|++||++++++++|+|+||+|+|++. ..|.+.++|+++++++||++|
T Consensus 191 f~~ye~~k~~~~~~--~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~g 268 (297)
T 1okc_A 191 FGVYDTAKGMLPDP--KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKA 268 (297)
T ss_dssp HHHHHHHHHSSCGG--GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHhccC--CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCe
Confidence 99999999977543 3455677889999999999999999999999999873 258999999999999999999
Q ss_pred cccc
Q 023531 174 TKED 177 (281)
Q Consensus 174 ~~~~ 177 (281)
.+..
T Consensus 269 lyrG 272 (297)
T 1okc_A 269 FFKG 272 (297)
T ss_dssp GGTT
T ss_pred Eecc
Confidence 6654
No 5
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=22.68 E-value=16 Score=22.22 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=16.2
Q ss_pred CchHHHHHHHHHhhCccccc
Q 023531 63 SSIASCYTNLLKEQGASAFW 82 (281)
Q Consensus 63 ~~~~~~~~~i~~~~G~~gly 82 (281)
+++.+.+.+||+++++.|++
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 45677888899999998875
No 6
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=19.33 E-value=87 Score=20.42 Aligned_cols=36 Identities=11% Similarity=0.124 Sum_probs=28.5
Q ss_pred hchHHhhcCcchhhhHhhhhhhhHHHHHHHHHHHHhC
Q 023531 227 IGLISLFTRSLPIRIMLVGPVVTLQWFFYDTIKVLSG 263 (281)
Q Consensus 227 eG~~~~y~~G~~~~~~~~~~~~~~~~~~~e~~~~~~~ 263 (281)
.|+.-.+| -+...++.++|..++.+.+|++-.+...
T Consensus 32 ~~i~N~~R-R~~~q~l~v~pPfi~~Y~i~~Wa~~~ne 67 (81)
T 3tgu_G 32 DALPNVWR-RFSSQVFKVAPPFLGAYLLYSWGTQEFE 67 (81)
T ss_dssp CCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHH-HHHHhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 35556676 7778888999999999999988877653
No 7
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=18.77 E-value=68 Score=26.29 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=29.9
Q ss_pred HHHHhhcChHHHHHHHhhccc--hhHHHHHHHhhchHHhhcCcchhhhHh
Q 023531 196 SFGSFISNPADNIVASLYNKK--ADSLMLAVKKIGLISLFTRSLPIRIML 243 (281)
Q Consensus 196 ~~a~~~~~Pldvi~~r~q~~~--~~~~~~i~~~eG~~~~y~~G~~~~~~~ 243 (281)
..|+.-.||||.+|-.++.-- -..+++.+++|| ||+ -+...-+|
T Consensus 273 qLaTFdnypfdllRfqL~Slistp~~I~e~i~K~G---LFk-~it~~~~r 318 (368)
T 3vjj_A 273 QLATFDNYPFDLLRFQLSSLISTPALIREKIAKEG---LFK-IITSNTLR 318 (368)
T ss_dssp HHHHCTTCBHHHHHHHCSSCCCCCHHHHHHHHHSC---SEE-ECC-----
T ss_pred eeecCCCCCHHHHHHHhhhhccChHHHHHHHHhcC---ceE-EEeccccc
Confidence 456777899999988876654 678999999999 555 44444333
No 8
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=17.55 E-value=60 Score=19.42 Aligned_cols=26 Identities=15% Similarity=0.161 Sum_probs=14.8
Q ss_pred hhhhhhhhheeCCCCCCchHHHHHHH
Q 023531 47 PLDVVKVNMQVHPIKYSSIASCYTNL 72 (281)
Q Consensus 47 Pld~ik~~~q~~~~~~~~~~~~~~~i 72 (281)
-+..||+|+|+-+..-.....+-+.|
T Consensus 10 rlaaiktrlqalggseaelaafekei 35 (73)
T 2a3d_A 10 RLAAIKTRLQALGGSEAELAAFEKEI 35 (73)
T ss_dssp HHHHHHHHHHHCSSGGGTHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 35568999998654333333333443
No 9
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=14.88 E-value=1.3e+02 Score=22.79 Aligned_cols=42 Identities=12% Similarity=0.007 Sum_probs=28.0
Q ss_pred hhhHHHHhhHHHHHHHhhhcc-----CCCCchHHHHHHHHHHHHHHH
Q 023531 94 AQGGCRFGLYEYFKSLYSSVL-----GDCSRSSVFFLSSASAEVFAN 135 (281)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ag~~ag~~~~ 135 (281)
....+.|..||..|...-... ..-...+..++||..|++++.
T Consensus 111 ~~gf~~Fr~fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~~ 157 (178)
T 1y9i_A 111 SIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASR 157 (178)
T ss_dssp GGGHHHHHHHHHHCCTHHHHTTCCCSSCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHhhhcccCCCCcchHHHHHHHHHHHHHHH
Confidence 356677888888875433222 233467888999998888664
No 10
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=14.41 E-value=1.2e+02 Score=19.67 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=27.9
Q ss_pred hchHHhhcCcchhhhHhhhhhhhHHHHHHHHHHHHh
Q 023531 227 IGLISLFTRSLPIRIMLVGPVVTLQWFFYDTIKVLS 262 (281)
Q Consensus 227 eG~~~~y~~G~~~~~~~~~~~~~~~~~~~e~~~~~~ 262 (281)
.|+.-.+| -+..+++.++|..++++.+|+.-.+..
T Consensus 32 ~~i~n~~R-R~~~~~l~v~pPfv~~Y~i~~Wa~~~~ 66 (81)
T 1pp9_G 32 KGIPNVLR-RTRACILRVAPPFVAFYLVYTWGTQEF 66 (81)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHH-HHHhcceeeehhHHHHHHHHHHHHHHH
Confidence 45566677 777788889999999999998887755
Done!