Query 023532
Match_columns 281
No_of_seqs 144 out of 534
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 04:46:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023532.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023532hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02577 DNase-RNase: Bifuncti 100.0 7.1E-37 1.5E-41 255.9 14.3 127 129-259 4-130 (135)
2 COG1259 Uncharacterized conser 100.0 1.8E-35 3.8E-40 254.0 15.3 128 130-260 10-137 (151)
3 PF14305 ATPgrasp_TupA: TupA-l 69.4 14 0.0003 34.0 6.2 49 171-219 171-221 (239)
4 PF12386 Peptidase_C71: Pseudo 59.0 33 0.00071 29.8 6.1 43 177-219 57-100 (142)
5 PF13670 PepSY_2: Peptidase pr 58.1 54 0.0012 24.9 6.7 48 178-229 28-75 (83)
6 TIGR00638 Mop molybdenum-pteri 40.4 72 0.0016 22.6 4.7 50 196-247 9-58 (69)
7 PF10130 PIN_2: PIN domain; I 31.5 36 0.00078 28.9 2.2 73 177-258 50-122 (133)
8 PRK13263 ureE urease accessory 29.7 1E+02 0.0023 28.4 5.0 19 183-201 119-137 (206)
9 PF14334 DUF4390: Domain of un 29.2 2.3E+02 0.0049 24.4 6.8 46 191-249 4-49 (165)
10 COG3212 Predicted membrane pro 26.9 3.3E+02 0.0072 23.6 7.4 57 177-234 81-138 (144)
11 PRK02315 adaptor protein; Prov 25.7 1.1E+02 0.0024 28.2 4.4 55 200-261 167-221 (233)
12 smart00306 HintN Hint (Hedgeho 20.4 1.4E+02 0.0031 22.1 3.4 22 107-128 52-73 (100)
No 1
>PF02577 DNase-RNase: Bifunctional nuclease; InterPro: IPR003729 This entry describes proteins of unknown function. The structure has been determined for one member of this group, the hypothetical protein TM0160 from Thermotoga maritima, which was found to consist of a duplication of two beta(3)-alpha(2) structural repeats, forming a single barrel-like beta-sheet [].; PDB: 1SJ5_A 1VJL_A.
Probab=100.00 E-value=7.1e-37 Score=255.87 Aligned_cols=127 Identities=28% Similarity=0.466 Sum_probs=107.4
Q ss_pred CcccCCCCCCCcEEEEEecCCCceEEeEEEcchhHHHHHHHHcccCCCCCchHHHHHHHHHHhCCEEeEEEEEeEECCEE
Q 023532 129 QGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAY 208 (281)
Q Consensus 129 ~~gaLd~~a~~PvIVLk~edg~~r~LPI~IgeaeAiaI~~aL~g~~~~RPlTHDLl~eiLe~lG~~V~~V~It~~~dGvF 208 (281)
+|..++...++|++||++++++ +.|||||+..||.+|+.++.|.+++||+|||||.++++++|.++++|+|+++++|+|
T Consensus 4 ~gi~~~~~~~~~vvlL~~~~~~-~~lpI~i~~~ea~~i~~~~~~~~~~RP~thdLl~~~l~~lg~~v~~V~I~~~~dg~f 82 (135)
T PF02577_consen 4 KGISVDEPSGQPVVLLREEDGD-RVLPIWIGAFEAQAIALALEGEKPPRPLTHDLLSDLLEALGAEVERVVIDDLEDGVF 82 (135)
T ss_dssp EEEEEETTTTEEEEEEEETTSS-EEEEEE--HHHHHHHHHHHCT---SS--HHHHHHHHHHHTTEEEEEEEEEEEETTEE
T ss_pred EEEEEcCCCCceEEEEEEcCCC-EEEEEEECHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHcCCEEEEEEEEEEECCEE
Confidence 4566777778899999999977 799999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEecCceeeEEEEecChHHHHHHHHHcCCCEEEehhhHhccCeeee
Q 023532 209 FAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVI 259 (281)
Q Consensus 209 yArL~L~~gg~e~e~~~IDARPSDAIALALR~~aPI~V~eeVl~~agv~v~ 259 (281)
||+|++++++ +++++|+||||||+||+|+++||||+++|+++++++..
T Consensus 83 ~A~L~l~~~~---~~~~id~RpSDAiaLAl~~~~PI~v~~~vl~~~~~~~~ 130 (135)
T PF02577_consen 83 YARLVLRQGG---EEIEIDARPSDAIALALRFGAPIYVSEEVLDEAGVPVE 130 (135)
T ss_dssp EEEEEEEETT---TEEEEEE-HHHHHHHHHHHT--EEEEHHHHHHH-EE--
T ss_pred EEEEEEecCC---EEEEEECcHhHHHHHHHHhCCCEEEeHHHHhhcCCCCc
Confidence 9999999776 57899999999999999999999999999999999886
No 2
>COG1259 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.8e-35 Score=254.03 Aligned_cols=128 Identities=27% Similarity=0.448 Sum_probs=119.4
Q ss_pred cccCCCCCCCcEEEEEecCCCceEEeEEEcchhHHHHHHHHcccCCCCCchHHHHHHHHHHhCCEEeEEEEEeEECCEEE
Q 023532 130 GGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYF 209 (281)
Q Consensus 130 ~gaLd~~a~~PvIVLk~edg~~r~LPI~IgeaeAiaI~~aL~g~~~~RPlTHDLl~eiLe~lG~~V~~V~It~~~dGvFy 209 (281)
+.++....+.|++++..++++++.|||||+..||.+|+.+++|..++||+||||+.++++.++.+|++|+|+++++||||
T Consensus 10 ~i~~~~~~~~~~~v~~~~~~~~~~lPI~Ig~~ea~si~~~l~~~~p~RP~tHdll~~i~~~l~~~v~kVvI~d~~d~tyy 89 (151)
T COG1259 10 GIFFVPVSSFPTVVLLLEGGDNRVLPIYIGASEALAIAKALEGVEPPRPLTHDLLVEIFEELGARVEKVVIDDLIDNTYY 89 (151)
T ss_pred EEEEecccCCceEEEEEEcCCCeEEEEEEeHHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhCCcEEEEEEEEeccCeEE
Confidence 66777788899777777777778999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCceeeEEEEecChHHHHHHHHHcCCCEEEehhhHhccCeeeec
Q 023532 210 AQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIE 260 (281)
Q Consensus 210 ArL~L~~gg~e~e~~~IDARPSDAIALALR~~aPI~V~eeVl~~agv~v~E 260 (281)
|+|+++++++ .+.+||||||||+||+|.|+||||.|+|+++++++..+
T Consensus 90 A~L~~~~~~~---~~~iDaRPSDaI~LAlr~~~PI~V~e~v~~~a~~~~~~ 137 (151)
T COG1259 90 ATLILEQDDG---KIQIDARPSDAIALALRVGAPIYVAEEVLDEAEIEIED 137 (151)
T ss_pred EEEEEEcCCc---eEEEecccchHHHHHHHhCCCEEEehhhhhhhcCcCcc
Confidence 9999999884 58999999999999999999999999999999988763
No 3
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=69.37 E-value=14 Score=34.03 Aligned_cols=49 Identities=24% Similarity=0.341 Sum_probs=40.4
Q ss_pred cccCCCCCchHHHHHHHHHHhCCEEeEEEE--EeEECCEEEEEEEEEecCc
Q 023532 171 RNVQIARPTLYQVVKEMIEKMGYEVRLVRV--TKRVHEAYFAQLYLTKVGN 219 (281)
Q Consensus 171 ~g~~~~RPlTHDLl~eiLe~lG~~V~~V~I--t~~~dGvFyArL~L~~gg~ 219 (281)
.....+||-..+=|.++.+.|.-...-|+| +...+++||.+|.+..+++
T Consensus 171 ~~~~~~kP~~l~emi~iA~~Ls~~f~fvRVDlY~~~~~iyFGElTf~p~~G 221 (239)
T PF14305_consen 171 PDEDIPKPKNLEEMIEIAEKLSKGFPFVRVDLYNVDGKIYFGELTFTPGAG 221 (239)
T ss_pred CCCCCCCChhHHHHHHHHHHHccCCCEEEEEEEEeCCcEEEEeeecCCCCc
Confidence 356789999999999999999765555555 7778999999999987764
No 4
>PF12386 Peptidase_C71: Pseudomurein endo-isopeptidase Pei; InterPro: IPR022119 This peptidase has the catalytic triad C-H-D at the C-terminal end, a triad similar to that in thiol proteases and animal transglutaminases. It catalyses the in vitro lysis of M. marburgensis cells under reducing conditions and exhibits characteristics of metal-activated peptidases.
Probab=59.04 E-value=33 Score=29.85 Aligned_cols=43 Identities=21% Similarity=0.347 Sum_probs=33.4
Q ss_pred CCchHHHHHHHHHHhCCEEeEEEEEeE-ECCEEEEEEEEEecCc
Q 023532 177 RPTLYQVVKEMIEKMGYEVRLVRVTKR-VHEAYFAQLYLTKVGN 219 (281)
Q Consensus 177 RPlTHDLl~eiLe~lG~~V~~V~It~~-~dGvFyArL~L~~gg~ 219 (281)
--..-+|+..+++.||+.|.-+-+--. .+|+.|.++.|+-++.
T Consensus 57 CtD~~Qlf~~v~~~lGY~Vq~~HVk~rc~~g~wygH~~LRv~~~ 100 (142)
T PF12386_consen 57 CTDACQLFYRVIESLGYDVQFEHVKCRCNSGKWYGHYRLRVKHK 100 (142)
T ss_pred chhHHHHHHHHHHhcCceEEEEEEEEEecCCceeeEEEEEecce
Confidence 345578999999999997765555332 5999999999997764
No 5
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=58.06 E-value=54 Score=24.92 Aligned_cols=48 Identities=19% Similarity=0.089 Sum_probs=34.7
Q ss_pred CchHHHHHHHHHHhCCEEeEEEEEeEECCEEEEEEEEEecCceeeEEEEecC
Q 023532 178 PTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLR 229 (281)
Q Consensus 178 PlTHDLl~eiLe~lG~~V~~V~It~~~dGvFyArL~L~~gg~e~e~~~IDAR 229 (281)
-++.+-+...+++.|++|.+|++++ +|.|-.+..-.+|. .-.+.+|.+
T Consensus 28 ~~~~~~~~~~l~~~G~~v~~ve~~~--~g~yev~~~~~dG~--~~ev~vD~~ 75 (83)
T PF13670_consen 28 WLSIEQAVAKLEAQGYQVREVEFDD--DGCYEVEARDKDGK--KVEVYVDPA 75 (83)
T ss_pred cCCHHHHHHHHHhcCCceEEEEEcC--CCEEEEEEEECCCC--EEEEEEcCC
Confidence 3568888999999999999999864 77898885554443 244566654
No 6
>TIGR00638 Mop molybdenum-pterin binding domain. This model describes a multigene family of molybdenum-pterin binding proteins of about 70 amino acids in Clostridium pasteurianum, as a tandemly-repeated domain C-terminal to an unrelated domain in ModE, a molybdate transport gene repressor of E. coli, and in single or tandemly paired domains in several related proteins.
Probab=40.43 E-value=72 Score=22.64 Aligned_cols=50 Identities=8% Similarity=-0.041 Sum_probs=38.5
Q ss_pred eEEEEEeEECCEEEEEEEEEecCceeeEEEEecChHHHHHHHHHcCCCEEEe
Q 023532 196 RLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVN 247 (281)
Q Consensus 196 ~~V~It~~~dGvFyArL~L~~gg~e~e~~~IDARPSDAIALALR~~aPI~V~ 247 (281)
-..+|.++..+-..+++.+.-++. ..+.-..-+..+-.|+++-|.|+|+.
T Consensus 9 l~g~I~~i~~~g~~~~v~l~~~~~--~~l~a~i~~~~~~~l~l~~G~~v~~~ 58 (69)
T TIGR00638 9 LKGKVVAIEDGDVNAEVDLLLGGG--TKLTAVITLESVAELGLKPGKEVYAV 58 (69)
T ss_pred EEEEEEEEEECCCeEEEEEEECCC--CEEEEEecHHHHhhCCCCCCCEEEEE
Confidence 346677777777789999887653 25666777889999999999999875
No 7
>PF10130 PIN_2: PIN domain; InterPro: IPR019298 This entry represents a set of bacterial and archaeal proteins that are predicted to be RNases (from similarities to 5'-exonucleases).
Probab=31.50 E-value=36 Score=28.91 Aligned_cols=73 Identities=11% Similarity=0.160 Sum_probs=41.3
Q ss_pred CCchHHHHHHHHHHhCCEEeEEEEEeEECCEEEEEEEEEecCceeeEEEEecChHHHHHHHHHcCCCEEEehhhHhccCe
Q 023532 177 RPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGM 256 (281)
Q Consensus 177 RPlTHDLl~eiLe~lG~~V~~V~It~~~dGvFyArL~L~~gg~e~e~~~IDARPSDAIALALR~~aPI~V~eeVl~~agv 256 (281)
+=++-+-+.+++..+ ...|.|.. .+.|. =+..+..+ ..-.+|-.=-.-+|||+..++||+-.+.=+-..|+
T Consensus 50 ~~l~~~~~~~~l~~l---~~~I~iv~--~~~~~--~~~~~A~~--~~~~~D~~D~p~vALaL~l~~~IWT~Dkdl~~~Gl 120 (133)
T PF10130_consen 50 SKLSEEELEEVLNIL---FSRIKIVP--EEIYS--ENIEEARE--IIRDRDPDDWPFVALALQLNAPIWTEDKDLFGSGL 120 (133)
T ss_pred hCCCHHHHHHHHHHH---HhheEEec--HHHhH--HHHHHHHH--HhcCCCcchHHHHHHHHHcCCCeecCcHHHHhcCc
Confidence 335556666666655 23344432 33333 11222110 11124544455699999999999999988877776
Q ss_pred ee
Q 023532 257 RV 258 (281)
Q Consensus 257 ~v 258 (281)
..
T Consensus 121 ~~ 122 (133)
T PF10130_consen 121 AT 122 (133)
T ss_pred ch
Confidence 53
No 8
>PRK13263 ureE urease accessory protein UreE; Provisional
Probab=29.71 E-value=1e+02 Score=28.40 Aligned_cols=19 Identities=21% Similarity=0.485 Sum_probs=16.7
Q ss_pred HHHHHHHHhCCEEeEEEEE
Q 023532 183 VVKEMIEKMGYEVRLVRVT 201 (281)
Q Consensus 183 Ll~eiLe~lG~~V~~V~It 201 (281)
+|.+||+++|..+++++.-
T Consensus 119 VLedmL~~LG~~v~~~~ap 137 (206)
T PRK13263 119 VLADMLRRLGVTVERASAP 137 (206)
T ss_pred HHHHHHHHCCCceEEeEec
Confidence 7889999999999888763
No 9
>PF14334 DUF4390: Domain of unknown function (DUF4390)
Probab=29.22 E-value=2.3e+02 Score=24.40 Aligned_cols=46 Identities=13% Similarity=0.207 Sum_probs=35.0
Q ss_pred hCCEEeEEEEEeEECCEEEEEEEEEecCceeeEEEEecChHHHHHHHHHcCCCEEEehh
Q 023532 191 MGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKY 249 (281)
Q Consensus 191 lG~~V~~V~It~~~dGvFyArL~L~~gg~e~e~~~IDARPSDAIALALR~~aPI~V~ee 249 (281)
-+++|+.+.++ ..+|.|+.+ ..+|...++.+.=||+.|+|++..=+
T Consensus 4 ~~~~i~~~~~~-~~~~~l~l~------------a~~~~~l~~~l~~AL~~Gipl~f~~~ 49 (165)
T PF14334_consen 4 QSIEIRSAELE-NSDGGLYLS------------ADVDFELSPELEDALKNGIPLYFVFE 49 (165)
T ss_pred CccEEEEEEEE-EeCCEEEEE------------EEEeccCCHHHHHHHHcCCeEEEEEE
Confidence 35678888888 567766632 24777889999999999999998643
No 10
>COG3212 Predicted membrane protein [Function unknown]
Probab=26.95 E-value=3.3e+02 Score=23.55 Aligned_cols=57 Identities=7% Similarity=0.065 Sum_probs=41.5
Q ss_pred CCchH-HHHHHHHHHhCCEEeEEEEEeEECCEEEEEEEEEecCceeeEEEEecChHHHH
Q 023532 177 RPTLY-QVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAI 234 (281)
Q Consensus 177 RPlTH-DLl~eiLe~lG~~V~~V~It~~~dGvFyArL~L~~gg~e~e~~~IDARPSDAI 234 (281)
.+.+. .++.-.++..+++|..+.+.. .+|.++=++-+..+.+...+++|||+..+-|
T Consensus 81 ~iis~~ea~~iAl~~~~G~v~dieLe~-~~g~~vYevei~~~d~~e~ev~iDA~TG~Il 138 (144)
T COG3212 81 TIISLEEAKEIALKRVPGKVDDIELEE-DNGRLVYEVEIVKDDGQEYEVEIDAKTGKIL 138 (144)
T ss_pred cccCHHHHHHHHHHHCCCceeEEEEec-cCCEEEEEEEEEeCCCcEEEEEEecCCCCcc
Confidence 44443 355566777888999999986 6799988999988633336899999876543
No 11
>PRK02315 adaptor protein; Provisional
Probab=25.68 E-value=1.1e+02 Score=28.23 Aligned_cols=55 Identities=9% Similarity=0.083 Sum_probs=43.4
Q ss_pred EEeEECCEEEEEEEEEecCceeeEEEEecChHHHHHHHHHcCCCEEEehhhHhccCeeeecC
Q 023532 200 VTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIES 261 (281)
Q Consensus 200 It~~~dGvFyArL~L~~gg~e~e~~~IDARPSDAIALALR~~aPI~V~eeVl~~agv~v~E~ 261 (281)
.+.+ +|.||-.|.+.... .-+..+.|.++++..++-|=.++..++.+.|-.+++.
T Consensus 167 LY~~-~~~YYL~l~~~~~~------~~~~~~~~~~ail~EYg~~s~~t~~~l~EhGk~Im~~ 221 (233)
T PRK02315 167 LYKY-EGRYYLTVLFDDEN------YPEEEIDDMLAILLEYANESDLTIHRLQEYGKVIMSH 221 (233)
T ss_pred CeEE-CCEEEEEEEecCcc------CCHHHHHHHHHHHHHhCCCCcccHHHHHHhchhhhhc
Confidence 3444 99999888876432 1234689999999999999999999999999887644
No 12
>smart00306 HintN Hint (Hedgehog/Intein) domain N-terminal region. Hedgehog/Intein domain, N-terminal region. Domain has been split to accommodate large insertions of endonucleases.
Probab=20.39 E-value=1.4e+02 Score=22.14 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=16.5
Q ss_pred cCceeEEEeccCceeEEeecCC
Q 023532 107 GADGFMIKMRDGRHLRCVHNNP 128 (281)
Q Consensus 107 ~~~~~~~~m~~g~~l~~~~~~~ 128 (281)
..+-+.|+.++|+.++|..+|+
T Consensus 52 ~~~~~~i~~~~g~~i~~T~~H~ 73 (100)
T smart00306 52 EKKFYRIKTENGREITLTPDHL 73 (100)
T ss_pred ceeEEEEEECCCCEEEECCCCE
Confidence 3455567889999999987554
Done!