Query 023532
Match_columns 281
No_of_seqs 144 out of 534
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 08:26:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023532.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023532hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vjl_A Hypothetical protein TM 100.0 3.2E-41 1.1E-45 291.6 16.9 130 129-259 19-154 (164)
2 3jtp_A Adapter protein MECA 1; 22.2 1.3E+02 0.0044 22.8 4.8 60 193-261 27-86 (98)
3 2e5i_A Heterogeneous nuclear r 20.4 1.3E+02 0.0045 23.7 4.7 38 176-216 34-71 (124)
4 3zzy_A Polypyrimidine tract-bi 19.4 1.8E+02 0.006 23.3 5.3 40 176-217 37-76 (130)
5 3pxi_a Adapter protein MECA 1; 18.1 1.5E+02 0.005 23.2 4.5 56 197-261 44-99 (111)
6 4exr_A Putative lipoprotein; Y 17.4 4.4E+02 0.015 21.9 8.4 48 181-230 117-164 (174)
7 3fbs_A Oxidoreductase; structu 16.1 3.1E+02 0.011 22.5 6.3 111 102-217 80-210 (297)
8 2pt7_G HP1451, hypothetical pr 16.1 1.7E+02 0.0058 24.4 4.6 35 180-214 7-41 (152)
9 1zpv_A ACT domain protein; str 13.1 3.6E+02 0.012 18.7 7.2 43 175-218 13-55 (91)
10 3oov_A Methyl-accepting chemot 11.4 4.1E+02 0.014 19.3 5.2 70 179-248 20-90 (169)
No 1
>1vjl_A Hypothetical protein TM0160; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: d.257.1.1 PDB: 1sj5_A
Probab=100.00 E-value=3.2e-41 Score=291.59 Aligned_cols=130 Identities=24% Similarity=0.362 Sum_probs=120.9
Q ss_pred CcccCCCCCCCcEEEEEecCCCceEEeEEEcchhHHHHHHHHcccCCCCCchHHHHHHHHHHhCCEEeEEEEEeEECCEE
Q 023532 129 QGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAY 208 (281)
Q Consensus 129 ~~gaLd~~a~~PvIVLk~edg~~r~LPI~IgeaeAiaI~~aL~g~~~~RPlTHDLl~eiLe~lG~~V~~V~It~~~dGvF 208 (281)
+|+++|.++++|+|||++++++ +.|||||++.||.+|+.+++|.+++||+|||||.++++++|+++++|+|++++||||
T Consensus 19 ~gi~ld~~~~~pvvvL~~~~g~-r~LPI~Ig~~EA~aI~~~l~~~~~~RPlThDLl~~il~~lg~~v~~V~I~~l~dgtf 97 (164)
T 1vjl_A 19 KTLALDRVSNTPVVILGIEGTN-RVLPIWIGACEGHALALAMEKMEFPRPLTHDLLLSVLESLEARVDKVIIHSLKDNTF 97 (164)
T ss_dssp EEEEECTTTCCEEEEEEETTSS-EEEEEECCHHHHHHHHHHHHTCCCSSCCHHHHHHHHHHHTTEEEEEEEEEEEETTEE
T ss_pred EEEEEcCCCCceEEEEEecCCC-EEEEEEECHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCEEEEEEEEEeECCEE
Confidence 6999999999999999999887 799999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEE------ecCceeeEEEEecChHHHHHHHHHcCCCEEEehhhHhccCeeee
Q 023532 209 FAQLYLT------KVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVI 259 (281)
Q Consensus 209 yArL~L~------~gg~e~e~~~IDARPSDAIALALR~~aPI~V~eeVl~~agv~v~ 259 (281)
||+|+|+ +++++.+.+++|||||||||||+|+++||||+++|++++|+++.
T Consensus 98 yA~L~l~~~~~~~~~~~~~~~~~iDaRPSDAIaLAlR~~~PI~V~e~Vl~~a~i~~~ 154 (164)
T 1vjl_A 98 YATLVIRDLTYTDEEDEEAALIDIDSRPSDAIILAVKTGAPIFVSDNLVEKHSIELE 154 (164)
T ss_dssp EEEEEEEECC--------CCEEEEEECHHHHHHHHHHHTCCEEEEHHHHHHHCEECC
T ss_pred EEEEEEeccccccCCCCcceEEEEECcHHHHHHHHHHHCCCEEEcHHHHhhcCCCCc
Confidence 9999999 66533357899999999999999999999999999999999876
No 2
>3jtp_A Adapter protein MECA 1; MECA;adaptor protein;degradation TAG, competence, sporulation, protein binding; 2.17A {Bacillus subtilis} PDB: 2y1r_I* 3pxg_a
Probab=22.21 E-value=1.3e+02 Score=22.84 Aligned_cols=60 Identities=8% Similarity=0.058 Sum_probs=45.7
Q ss_pred CEEeEEEEEeEECCEEEEEEEEEecCceeeEEEEecChHHHHHHHHHcCCCEEEehhhHhccCeeeecC
Q 023532 193 YEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIES 261 (281)
Q Consensus 193 ~~V~~V~It~~~dGvFyArL~L~~gg~e~e~~~IDARPSDAIALALR~~aPI~V~eeVl~~agv~v~E~ 261 (281)
.....=..+.. +|.||=.|.+... -+....+.++++..++-|-.+++..+++.|--+++.
T Consensus 27 ~~~~~s~LYk~-~~~YYL~l~~~~~--------~~~~~~~~~a~l~EYg~~s~~t~~~L~EhGk~Ii~~ 86 (98)
T 3jtp_A 27 VNGSKTTLYSF-ENRYYLYVDFCDM--------TDEEVENQLSIMLEYANESSISIHRLEEYGKLIISE 86 (98)
T ss_dssp CCCSEEEEEEE-TTEEEEEEECCSC--------CTTHHHHHHHHHHHHCEECCCCHHHHHHHSEEEECS
T ss_pred CCCCCceeEEE-CCEEEEEEEeCCC--------CHHHHHHHHHHHHHhCCCCcccHHHHHhhChhhchh
Confidence 33334455554 9999988877532 124578999999999999999999999999888754
No 3
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.36 E-value=1.3e+02 Score=23.66 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=28.9
Q ss_pred CCCchHHHHHHHHHHhCCEEeEEEEEeEECCEEEEEEEEEe
Q 023532 176 ARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTK 216 (281)
Q Consensus 176 ~RPlTHDLl~eiLe~lG~~V~~V~It~~~dGvFyArL~L~~ 216 (281)
+.+.|.|.|.+++...|- |.+|.|.. +.| |+|-|.+..
T Consensus 34 ~~~vt~~~L~~~Fs~yG~-V~~v~i~~-~~G-f~aFVef~~ 71 (124)
T 2e5i_A 34 LYPITVDVLYTVCNPVGK-VQRIVIFK-RNG-IQAMVEFES 71 (124)
T ss_dssp CSCCCHHHHHHHHTTTSC-EEEEEEEE-SSS-EEEEEEESS
T ss_pred CCCCCHHHHHHHHHhcCC-EEEEEEEe-CCC-CEEEEEECC
Confidence 357788999999999985 89998865 334 668777754
No 4
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=19.35 E-value=1.8e+02 Score=23.32 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=31.3
Q ss_pred CCCchHHHHHHHHHHhCCEEeEEEEEeEECCEEEEEEEEEec
Q 023532 176 ARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKV 217 (281)
Q Consensus 176 ~RPlTHDLl~eiLe~lG~~V~~V~It~~~dGvFyArL~L~~g 217 (281)
+.+.|.|.|.+++...|- |.+|.|.. +..-|+|-+.+...
T Consensus 37 ~~~vte~~L~~lFs~yG~-V~~V~i~~-~~~gfqAFVef~~~ 76 (130)
T 3zzy_A 37 FYPVTLDVLHQIFSKFGT-VLKIITFT-KNNQFQALLQYADP 76 (130)
T ss_dssp CSCCCHHHHHHHHTTSSC-EEEEEEEE-ETTEEEEEEEESCH
T ss_pred CCCCCHHHHHHHHhCcCC-EEEEEEEc-CCCCcEEEEEECCH
Confidence 457899999999999985 88998875 44567788877543
No 5
>3pxi_a Adapter protein MECA 1; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=18.10 E-value=1.5e+02 Score=23.17 Aligned_cols=56 Identities=9% Similarity=0.103 Sum_probs=44.0
Q ss_pred EEEEEeEECCEEEEEEEEEecCceeeEEEEecChHHHHHHHHHcCCCEEEehhhHhccCeeeecC
Q 023532 197 LVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIES 261 (281)
Q Consensus 197 ~V~It~~~dGvFyArL~L~~gg~e~e~~~IDARPSDAIALALR~~aPI~V~eeVl~~agv~v~E~ 261 (281)
.=..+.. +|.||=.|.+.... +....+.++++..++-|-.+++..+.+.|--+++.
T Consensus 44 ~s~LYk~-~~~YYL~l~~~~~~--------~~~~~~~~ail~EYG~~s~~t~a~L~EhGk~Ii~~ 99 (111)
T 3pxi_a 44 KTTLYSF-ENRYYLYVDFCNMT--------DEEVENQLSILLEYATESSISIHRLEEYGKLIISE 99 (111)
T ss_dssp EEEEEEE-TTEEEEEEEECSCC--------HHHHHHHHHHHHHHCEECCCCHHHHHHHSCEEECS
T ss_pred CceeEEE-CCEEEEEEeeCCCC--------HHHHHHHHHHHHHhCCCCcchHHHHHhhChhhchh
Confidence 3444554 99999988875321 34568999999999999999999999999888754
No 6
>4exr_A Putative lipoprotein; YPEB domain dimer, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; 1.85A {Clostridium difficile}
Probab=17.37 E-value=4.4e+02 Score=21.88 Aligned_cols=48 Identities=17% Similarity=0.133 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhCCEEeEEEEEeEECCEEEEEEEEEecCceeeEEEEecCh
Q 023532 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRP 230 (281)
Q Consensus 181 HDLl~eiLe~lG~~V~~V~It~~~dGvFyArL~L~~gg~e~e~~~IDARP 230 (281)
-+.+.-.+++.++.|..+.+.. .+|.++=.+.+..++.+ ..+.|||.-
T Consensus 117 ~~A~~~Al~~~~G~v~e~eLd~-d~G~~vYevei~~~~~~-~ev~IDA~t 164 (174)
T 4exr_A 117 QQAMEIALKEQNGIVKEWSLDK-DLDVTFYKIRIDKDKNE-YDIKVDSKK 164 (174)
T ss_dssp HHHHHHHHHHSCSEEEEEEEEE-ETTEEEEEEEEEETTEE-EEEEEETTT
T ss_pred HHHHHHHHHhCCCeEEEEEEEE-eCCEEEEEEEEEECCEE-EEEEEECCC
Confidence 3455556677788999999864 78988888888776543 578899864
No 7
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=16.15 E-value=3.1e+02 Score=22.46 Aligned_cols=111 Identities=12% Similarity=0.075 Sum_probs=56.8
Q ss_pred EEeeecCceeEEEeccCceeEEeecCCCcccCCC---CCC------CcEEEEEe-----cCCCceEEeEEEcchhHHHHH
Q 023532 102 VEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLPD---YAP------HPAIVLKM-----EDGTGLLLPIIVLEMPSVLLM 167 (281)
Q Consensus 102 ~~~~s~~~~~~~~m~~g~~l~~~~~~~~~gaLd~---~a~------~PvIVLk~-----edg~~r~LPI~IgeaeAiaI~ 167 (281)
+.+....+++.++..+|+.+.+-+.--..|+-+. +.. ..+..... ..++ .+-|+=+...+..++
T Consensus 80 ~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~v~vvG~G~~~~e~a 157 (297)
T 3fbs_A 80 TDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDELPEIAGLRERWGSAVFHCPYCHGYELDQG--KIGVIAASPMAIHHA 157 (297)
T ss_dssp EEEEEETTEEEEEETTSCEEEEEEEEECCCCEEECCCCBTTGGGBTTTEESCHHHHTGGGTTC--EEEEECCSTTHHHHH
T ss_pred EEEEEcCCeEEEEECCCCEEEcCEEEECCCCCCCCCCCCCchhhcCCeeEEcccCcchhhcCC--EEEEEecCccHHHHH
Confidence 3344555678888888887766553222222111 110 11111110 1122 233333555566666
Q ss_pred HHHccc------CCCCCchHHHHHHHHHHhCCEEeEEEEEeEECCEEEEEEEEEec
Q 023532 168 AAMRNV------QIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKV 217 (281)
Q Consensus 168 ~aL~g~------~~~RPlTHDLl~eiLe~lG~~V~~V~It~~~dGvFyArL~L~~g 217 (281)
..+... ....+...+.+.+.++..|.++..-.|.++..+- .+.+.++
T Consensus 158 ~~l~~~g~v~~v~~~~~~~~~~~~~~l~~~gv~i~~~~v~~i~~~~---~v~~~~g 210 (297)
T 3fbs_A 158 LMLPDWGETTFFTNGIVEPDADQHALLAARGVRVETTRIREIAGHA---DVVLADG 210 (297)
T ss_dssp HHGGGTSEEEEECTTTCCCCHHHHHHHHHTTCEEECSCEEEEETTE---EEEETTS
T ss_pred HHhhhcCcEEEEECCCCCCCHHHHHHHHHCCcEEEcceeeeeecCC---eEEeCCC
Confidence 665541 1122234456778889999988766677777654 5555443
No 8
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=16.12 E-value=1.7e+02 Score=24.36 Aligned_cols=35 Identities=14% Similarity=0.231 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHhCCEEeEEEEEeEECCEEEEEEEE
Q 023532 180 LYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYL 214 (281)
Q Consensus 180 THDLl~eiLe~lG~~V~~V~It~~~dGvFyArL~L 214 (281)
..+.|.++++.||..+..+.+....+++++-.|.=
T Consensus 7 ~~~~L~~il~~m~~~~~~i~v~~~~~~~i~i~i~g 41 (152)
T 2pt7_G 7 IKQELKDLFSHLPYKINKVEVSLYEPGVLLIDIDG 41 (152)
T ss_dssp HHHHHHHHTTTTTCCEEEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCceEEEEEEecCCEEEEEEec
Confidence 45789999999999887788877788888777653
No 9
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=13.06 E-value=3.6e+02 Score=18.74 Aligned_cols=43 Identities=12% Similarity=0.084 Sum_probs=32.7
Q ss_pred CCCCchHHHHHHHHHHhCCEEeEEEEEeEECCEEEEEEEEEecC
Q 023532 175 IARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVG 218 (281)
Q Consensus 175 ~~RPlTHDLl~eiLe~lG~~V~~V~It~~~dGvFyArL~L~~gg 218 (281)
+-||-.-.=+..++...|+.|..+...... |.|+.++.+.-.+
T Consensus 13 ~DrpGila~vt~~la~~~~NI~~i~~~~~~-~~~~~~i~v~~~~ 55 (91)
T 1zpv_A 13 KDKSGIVAGVSGKIAELGLNIDDISQTVLD-EYFTMMAVVSSDE 55 (91)
T ss_dssp SCCTTHHHHHHHHHHHTTCEEEEEEEEEET-TEEEEEEEEEESS
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEEeEEEc-CEEEEEEEEEeCC
Confidence 357766555667888889999999887654 9999999986543
No 10
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=11.37 E-value=4.1e+02 Score=19.26 Aligned_cols=70 Identities=10% Similarity=0.095 Sum_probs=36.8
Q ss_pred chHHHHHHHHHHhCCEEeEEEEEeEECCEEEEEEEEEecCceeeEEEEecCh-HHHHHHHHHcCCCEEEeh
Q 023532 179 TLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRP-SDAINIAVRCKVPIQVNK 248 (281)
Q Consensus 179 lTHDLl~eiLe~lG~~V~~V~It~~~dGvFyArL~L~~gg~e~e~~~IDARP-SDAIALALR~~aPI~V~e 248 (281)
+.+.++..+.+.+|+.--.+.+.+-..+.+.................+...+ ...+.-+++.+-|+++++
T Consensus 20 ~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d 90 (169)
T 3oov_A 20 VLRLCAEGLHDVLGYERVNILMADTARTSLSFVAAVGTADFNPAGVVLPLDQRGGVITKCFTDRQVYMIDD 90 (169)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEEECTTSSEEEEEEEESCSSCCCTTCEEESSGGGHHHHHHHHHTCCEEESC
T ss_pred HHHHHHHHHHHhhCCceEEEEEEeCCCCeEEEEEEeCchhhhhhcccCCcccccchHHHHHhcCCCEEecc
Confidence 3344444555555654444444443345665444443221111234555543 456677889999999974
Done!