BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023533
(281 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 110 bits (276), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 116/233 (49%), Gaps = 8/233 (3%)
Query: 51 IPVIDMQKLLSGD--FMDSELGKLDHACREWGFFQLVNHGXXXXXXXXXXXXIQEFFNLP 108
+P ID++ + S D ++ + +L A +WG L+NHG +EFF+L
Sbjct: 47 VPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLS 106
Query: 109 MKEKEKFW--MRPGETEGFGQNFVVSEEQRLDWAYGFTMFTLPTYXXXXXXXXXXXXXXX 166
++EKEK+ G+ +G+G + +L+W F P
Sbjct: 107 VEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYI 166
Query: 167 DTLEAWSAELGNLSQKLLHQMAKALGIDANDVK---ALFEEAMQTMRMNYYPPCPKPEQV 223
+ ++ L L+ K+ ++ LG++ + ++ EE + M++NYYP CP+PE
Sbjct: 167 EATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELA 226
Query: 224 IGFNSHSDASSITILLQLNETVGLQIKKDGMWVPVIPLPDAFIINVGDILEVI 276
+G +H+D S++T +L N GLQ+ +G WV +PD+ ++++GD LE++
Sbjct: 227 LGVEAHTDVSALTFILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEIL 278
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 110 bits (276), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 116/233 (49%), Gaps = 8/233 (3%)
Query: 51 IPVIDMQKLLSGD--FMDSELGKLDHACREWGFFQLVNHGXXXXXXXXXXXXIQEFFNLP 108
+P ID++ + S D ++ + +L A +WG L+NHG +EFF+L
Sbjct: 46 VPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLS 105
Query: 109 MKEKEKFW--MRPGETEGFGQNFVVSEEQRLDWAYGFTMFTLPTYXXXXXXXXXXXXXXX 166
++EKEK+ G+ +G+G + +L+W F P
Sbjct: 106 VEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYI 165
Query: 167 DTLEAWSAELGNLSQKLLHQMAKALGIDANDVK---ALFEEAMQTMRMNYYPPCPKPEQV 223
+ ++ L L+ K+ ++ LG++ + ++ EE + M++NYYP CP+PE
Sbjct: 166 EATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELA 225
Query: 224 IGFNSHSDASSITILLQLNETVGLQIKKDGMWVPVIPLPDAFIINVGDILEVI 276
+G +H+D S++T +L N GLQ+ +G WV +PD+ ++++GD LE++
Sbjct: 226 LGVEAHTDVSALTFILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEIL 277
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 115/233 (49%), Gaps = 8/233 (3%)
Query: 51 IPVIDMQKLLSGD--FMDSELGKLDHACREWGFFQLVNHGXXXXXXXXXXXXIQEFFNLP 108
+P ID++ + S D ++ + +L A +WG L+NHG +EFF+L
Sbjct: 47 VPTIDLKNIESDDEKIRENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLS 106
Query: 109 MKEKEKFW--MRPGETEGFGQNFVVSEEQRLDWAYGFTMFTLPTYXXXXXXXXXXXXXXX 166
++EKEK+ G+ +G+G + +L+W F P
Sbjct: 107 VEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYI 166
Query: 167 DTLEAWSAELGNLSQKLLHQMAKALGIDANDVK---ALFEEAMQTMRMNYYPPCPKPEQV 223
+ ++ L L+ K+ ++ LG++ + ++ EE + ++NYYP CP+PE
Sbjct: 167 EATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELA 226
Query: 224 IGFNSHSDASSITILLQLNETVGLQIKKDGMWVPVIPLPDAFIINVGDILEVI 276
+G +H+D S++T +L N GLQ+ +G WV +PD+ + ++GD LE++
Sbjct: 227 LGVEAHTDVSALTFILH-NXVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEIL 278
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 108/228 (47%), Gaps = 11/228 (4%)
Query: 52 PVIDMQKLLSGDFMDSELGKLDHACREWGFFQLVNHGXXXXXXXXXXXXIQEFFNLPMKE 111
P+I + K+ +G + + AC WGFF+LVNHG + + ++
Sbjct: 5 PIISLDKV-NGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQ 63
Query: 112 KEKFWMRPGETEGFGQNFVVSEEQRLDWAYGFTMFTLPTYXXXXXXXXXXXXXXXDTLEA 171
+ K + EG V +E DW F + LP +
Sbjct: 64 RFKELVASKALEG-----VQAEVTDXDWESTFFLKHLPI--SNISEVPDLDEEYREVXRD 116
Query: 172 WSAELGNLSQKLLHQMAKALGIDANDVKALFEEAMQ---TMRMNYYPPCPKPEQVIGFNS 228
++ L L+++LL + + LG++ +K F + +++ YPPCPKP+ + G +
Sbjct: 117 FAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRA 176
Query: 229 HSDASSITILLQLNETVGLQIKKDGMWVPVIPLPDAFIINVGDILEVI 276
H+DA I +L Q ++ GLQ+ KDG W+ V P + ++N+GD LEVI
Sbjct: 177 HTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVI 224
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Query: 176 LGNLSQKLLHQMAKALGIDANDVKALFEEAMQTMRMNYYPPCPKPEQVIGFNSHSDASSI 235
L K+L +A L ++ + K ++ +R+ +YPP PK + +H D ++I
Sbjct: 138 LDGXGGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTI 197
Query: 236 TILLQLNETVGLQI-KKDGMWVPVIPLPDAFIINVGDILEVI 276
T+LL E GL++ +DG W+P+ P P +IN+GD LE +
Sbjct: 198 TLLLGAEEG-GLEVLDRDGQWLPINPPPGCLVINIGDXLERL 238
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 209 MRMNYYPPCPKPEQ--VIGFNSHSDASSITILLQLNETVGLQIK-KDGMWVPVIPLPDAF 265
+R+ +YPP E+ I +H D + IT+L NE GLQ+K KDG W+ V
Sbjct: 152 LRILHYPPXTGDEEXGAIRAAAHEDINLITVLPTANEP-GLQVKAKDGSWLDVPSDFGNI 210
Query: 266 IINVGDILE 274
IIN+GD L+
Sbjct: 211 IINIGDXLQ 219
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 101/262 (38%), Gaps = 36/262 (13%)
Query: 43 ISSSEQVLIPVIDMQKLLSGDFMDSELG---KLDHACREWGFFQLVNHGXXXXXXXXXXX 99
+ S + +P ID+ L GD +++ ++D A R+ GFF VNHG
Sbjct: 1 MGSVSKANVPKIDVSPLF-GDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQK-- 57
Query: 100 XIQEF-FNLPMKEKEKFWMRPGETEGFGQ---NFVVS---EEQRLDWAYGFTMFT----- 147
+EF ++ +EK +R E Q + +S ++ + Y FT
Sbjct: 58 -TKEFHMSITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPR 116
Query: 148 ----LPTYXXXXXXXXXXXXXXXDTLEAWSAELGNLSQKLLHQMAKALGIDANDVKALF- 202
PT+ D E + ++ LS LL A ALG + N F
Sbjct: 117 IQAKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFK 176
Query: 203 -EEAMQTMRMNYYPPC-PKPEQVI---------GFNSHSDASSITILLQLNETVGLQIKK 251
++ + ++ + YP P PE I F H D S IT+L Q N LQ++
Sbjct: 177 PDDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSN-VQNLQVET 235
Query: 252 DGMWVPVIPLPDAFIINVGDIL 273
+ + ++IN G +
Sbjct: 236 AAGYQDIEADDTGYLINCGSYM 257
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 101/262 (38%), Gaps = 36/262 (13%)
Query: 43 ISSSEQVLIPVIDMQKLLSGDFMDSELG---KLDHACREWGFFQLVNHGXXXXXXXXXXX 99
+ S + +P ID+ L GD +++ ++D A R+ GFF VNHG
Sbjct: 1 MGSVSKANVPKIDVSPLF-GDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQK-- 57
Query: 100 XIQEF-FNLPMKEKEKFWMRPGETEGFGQ---NFVVS---EEQRLDWAYGFTMFT----- 147
+EF ++ +EK +R E Q + +S ++ + Y FT
Sbjct: 58 -TKEFHMSITPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPR 116
Query: 148 ----LPTYXXXXXXXXXXXXXXXDTLEAWSAELGNLSQKLLHQMAKALGIDANDVKALF- 202
PT+ D E + ++ LS LL A ALG + N F
Sbjct: 117 IQAKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFK 176
Query: 203 -EEAMQTMRMNYYPPC-PKPEQVI---------GFNSHSDASSITILLQLNETVGLQIKK 251
++ + ++ + YP P PE I F H D S IT+L Q N LQ++
Sbjct: 177 PDDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSN-VQNLQVET 235
Query: 252 DGMWVPVIPLPDAFIINVGDIL 273
+ + ++IN G +
Sbjct: 236 AAGYQDIEADDTGYLINCGSYM 257
>pdb|3CBU|A Chain A, Crystal Structure Of A Putative Glutathione S-Transferase
(Reut_a1011) From Ralstonia Eutropha Jmp134 At 2.05 A
Resolution
pdb|3CBU|B Chain B, Crystal Structure Of A Putative Glutathione S-Transferase
(Reut_a1011) From Ralstonia Eutropha Jmp134 At 2.05 A
Resolution
Length = 214
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 11 SLVVPLIQELAKNTPTIVPSRFTVND---EDHVPLISSSEQVL--------IPVIDMQKL 59
S VP +LAK +P + FT+ D H+PL+SS +++ +PV + K
Sbjct: 129 SRYVPAFAKLAKFSPYVAGDTFTLADCAAAVHLPLVSSCTKIIYGKDLLADLPVKEYLKT 188
Query: 60 LS 61
LS
Sbjct: 189 LS 190
>pdb|1S28|A Chain A, Crystal Structure Of Avrpphf Orf1, The Chaperone For The
Type Iii Effector Avrpphf Orf2 From P. Syringae
pdb|1S28|B Chain B, Crystal Structure Of Avrpphf Orf1, The Chaperone For The
Type Iii Effector Avrpphf Orf2 From P. Syringae
pdb|1S28|C Chain C, Crystal Structure Of Avrpphf Orf1, The Chaperone For The
Type Iii Effector Avrpphf Orf2 From P. Syringae
pdb|1S28|D Chain D, Crystal Structure Of Avrpphf Orf1, The Chaperone For The
Type Iii Effector Avrpphf Orf2 From P. Syringae
Length = 132
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 224 IGFNSHSDASSITILLQLNE--------TVGLQIKKDGMWVPVIPLPDAFIINVGDILEV 275
IG + D+++ LL+LNE TVGL KKDG+ IPL + + + E
Sbjct: 58 IGVIDNLDSNACQSLLRLNEFNLRTPFFTVGLNEKKDGVVHTRIPLLNLDNVEXRRVFEA 117
Query: 276 IL 277
+L
Sbjct: 118 LL 119
>pdb|1B22|A Chain A, Rad51 (N-Terminal Domain)
Length = 114
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 192 GIDANDVKALFEEAMQTMRMNYYPPCPKPEQVIGFNSHSDASSITILLQLNETV 245
GI+ANDVK L E T+ Y P +++I S+A + IL + + V
Sbjct: 32 GINANDVKKLEEAGFHTVEAVAYAP---KKELINIKGISEAKADKILAEAAKLV 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,560,334
Number of Sequences: 62578
Number of extensions: 270015
Number of successful extensions: 542
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 523
Number of HSP's gapped (non-prelim): 15
length of query: 281
length of database: 14,973,337
effective HSP length: 98
effective length of query: 183
effective length of database: 8,840,693
effective search space: 1617846819
effective search space used: 1617846819
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)