BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>023534
MLCYDVLQRDAVTNDSTTSTELSIQNQKSEADKIVDGMDFGELCNEFECISSPLVESTAR
QLVRDILELREGNRALGTFAVSVKYKDPTRSFTGREKYKRRLWATTALDNPSVTVQEMVM
LSTSVLSIKWTLRGKPKSIIANIGGDLIVKVYSKFTLNQISGQVIEHEELWDLSASSPVA
RAFFWASRRLYATTEAGKDSFDLINNLKSKISTEQENLGIYPDPSGDPTKVSSDSRCFCF
CFCLTSNVIYIAFASVITLSITHSKHYELLLLLYETRLVLS

High Scoring Gene Products

Symbol, full name Information P value
AT1G65230 protein from Arabidopsis thaliana 7.1e-77

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  023534
        (281 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2200410 - symbol:AT1G65230 "AT1G65230" species...   774  7.1e-77   1


>TAIR|locus:2200410 [details] [associations]
            symbol:AT1G65230 "AT1G65230" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0006098 "pentose-phosphate shunt"
            evidence=RCA] [GO:0009902 "chloroplast relocation" evidence=RCA]
            [GO:0010027 "thylakoid membrane organization" evidence=RCA]
            [GO:0015979 "photosynthesis" evidence=RCA] [GO:0016117 "carotenoid
            biosynthetic process" evidence=RCA] [GO:0019252 "starch
            biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
            diphosphate biosynthetic process, mevalonate-independent pathway"
            evidence=RCA] [GO:0019760 "glucosinolate metabolic process"
            evidence=RCA] [GO:0019761 "glucosinolate biosynthetic process"
            evidence=RCA] [GO:0034660 "ncRNA metabolic process" evidence=RCA]
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009507
            UniGene:At.11165 UniGene:At.35907 InterPro:IPR018790 Pfam:PF10184
            EMBL:AY099750 EMBL:BT000272 IPI:IPI00519728 RefSeq:NP_176702.2
            ProteinModelPortal:Q8L604 STRING:Q8L604 PaxDb:Q8L604 PRIDE:Q8L604
            EnsemblPlants:AT1G65230.1 GeneID:842830 KEGG:ath:AT1G65230
            TAIR:At1g65230 eggNOG:NOG323628 HOGENOM:HOG000030326
            InParanoid:Q8L604 OMA:DFGELCN PhylomeDB:Q8L604
            ProtClustDB:CLSN2690480 ArrayExpress:Q8L604 Genevestigator:Q8L604
            Uniprot:Q8L604
        Length = 286

 Score = 774 (277.5 bits), Expect = 7.1e-77, P = 7.1e-77
 Identities = 151/219 (68%), Positives = 181/219 (82%)

Query:    12 VTNDSTTSTELSIQNQKSEADKIVDGMDFGELCNEFECISSPLVESTARQLVRDILELRE 71
             V NDST  TE+SI   KSE DK+VD +DFGELCN+FEC SSP VESTARQLVRDILE+RE
Sbjct:    39 VMNDSTR-TEVSID--KSEVDKLVDKIDFGELCNDFECTSSPQVESTARQLVRDILEIRE 95

Query:    72 GNRALGTFAVSVKYKDPTRSFTGREKYKRRLWATTALDNPSVTVQEMVMLSTSVLSIKWT 131
             GNRA   +AVSVKYKDP RSFTGREKYKR +W T+ L+NP+VTVQEMVMLSTSVL IKWT
Sbjct:    96 GNRAFACYAVSVKYKDPVRSFTGREKYKRPMWITSGLENPTVTVQEMVMLSTSVLRIKWT 155

Query:   132 LRGKPKSIIANIGGDLIVKVYSKFTLNQISGQVIEHEELWDLSASSPVARAFFWASRRLY 191
             ++GKPKSI+A + GDLIVKV S+FTLNQISGQV EHEE WDLS+SSP+A+A+FW SRRL+
Sbjct:   156 VKGKPKSILAAVSGDLIVKVKSEFTLNQISGQVFEHEESWDLSSSSPIAQAYFWTSRRLF 215

Query:   192 ATTEAGKDSFDLINNLKSKISTEQENLGIYPDPSGDPTK 230
             A +E+ KD  D+  +L + ++T +E+  IY DP+ DP K
Sbjct:   216 AASESAKDVADVTKDLTANLTTRKEDTDIYRDPT-DPNK 253


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.130   0.365    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      281       265   0.00093  114 3  11 22  0.37    34
                                                     32  0.50    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  188 KB (2108 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.05u 0.21s 21.26t   Elapsed:  00:00:01
  Total cpu time:  21.05u 0.21s 21.26t   Elapsed:  00:00:01
  Start:  Fri May 10 06:58:41 2013   End:  Fri May 10 06:58:42 2013

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