BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023534
(281 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0VRN6|GLPK_ALCBS Glycerol kinase OS=Alcanivorax borkumensis (strain SK2 / ATCC
700651 / DSM 11573) GN=glpK PE=3 SV=1
Length = 497
Score = 34.3 bits (77), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 170 LWDLSASSPVARAFFWASRRLYATTEAGKDSFDLINNLKSKISTEQENLGIYPDPSGDPT 229
LWD P+ARA W RR +T EA +D N ++SK G+ DP T
Sbjct: 86 LWDRETGDPLARAIVWQDRRTASTCEALRDQGHE-NQVRSKT-------GLLLDPYFSAT 137
Query: 230 KVS 232
K++
Sbjct: 138 KLA 140
>sp|Q5PQQ6|IQCG_RAT IQ domain-containing protein G OS=Rattus norvegicus GN=Iqcg PE=2
SV=1
Length = 419
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 15/78 (19%)
Query: 39 DFGELCNEFE--CISSPL-VESTARQLVRDILELR---------EG---NRALGTFAVSV 83
D ++ E+E I L E T ++L +D LELR G R +G+F +
Sbjct: 339 DLAKMIREYEQVIIEDRLEKEKTRKKLEQDDLELRSIVKLQAWWRGTVVRREIGSFKMPK 398
Query: 84 KYKDPTRSFTGREKYKRR 101
K KD ++ G+EK KRR
Sbjct: 399 KEKDDSKDAKGKEKDKRR 416
>sp|P20662|ZFY2_MOUSE Zinc finger Y-chromosomal protein 2 OS=Mus musculus GN=Zfy2 PE=2
SV=2
Length = 777
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 109 DNPSVTVQEMVMLSTSVLSIKWTLRGKPKSIIAN--IGGDLIVKVYSKFTLNQ--ISGQV 164
D SV VQE V LS S +++ + P S+I I LI V+ L + IS V
Sbjct: 30 DQISVEVQETVFLSNSDVTVHNFVPDDPDSVIIQDVIENVLIEDVHCSHILEETDISDNV 89
Query: 165 IEHEELWDLSASSPVARAFF 184
I E++ DL + V+ A F
Sbjct: 90 IIPEQVLDLDTAEEVSLAQF 109
>sp|Q4JBP0|SYL1_SULAC Leucine--tRNA ligase 1 OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=leuS1 PE=3 SV=1
Length = 942
Score = 32.0 bits (71), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 168 EELWDLSASSPVARAFFWAS------RRLYATTEAGKDSFDLINNLKSKISTEQENLGIY 221
EELW +S V R F + +R E + + DLIN++KSK+S E E + IY
Sbjct: 772 EELWHKLDNSLVVRQRFPSKGELQYDKRALLEIEYLRYTIDLINSMKSKMSKEPETVIIY 831
>sp|Q7MNF8|HSCA_VIBVY Chaperone protein HscA homolog OS=Vibrio vulnificus (strain YJ016)
GN=hscA PE=3 SV=1
Length = 617
Score = 32.0 bits (71), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 13/73 (17%)
Query: 9 RDAVTNDSTTSTELSIQNQKSEADKIVDGM------DFGELCNEFECISSPLVESTARQL 62
RD++T ++ Q+ EAD++++G+ D EL +E E ++T Q
Sbjct: 514 RDSMTYAKEDMQARALAEQRVEADRVIEGLIAAMQADGDELLSEAE-------KATLLQA 566
Query: 63 VRDILELREGNRA 75
+ ++ELR GN A
Sbjct: 567 IESLIELRNGNEA 579
>sp|Q8DEZ1|HSCA_VIBVU Chaperone protein HscA homolog OS=Vibrio vulnificus (strain CMCP6)
GN=hscA PE=3 SV=1
Length = 617
Score = 32.0 bits (71), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 13/73 (17%)
Query: 9 RDAVTNDSTTSTELSIQNQKSEADKIVDGM------DFGELCNEFECISSPLVESTARQL 62
RD++T ++ Q+ EAD++++G+ D EL +E E ++T Q
Sbjct: 514 RDSMTYAKEDMQARALAEQRVEADRVIEGLIAAMQADGDELLSEAE-------KATLLQA 566
Query: 63 VRDILELREGNRA 75
+ ++ELR GN A
Sbjct: 567 IESLIELRNGNEA 579
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,525,249
Number of Sequences: 539616
Number of extensions: 3709059
Number of successful extensions: 9140
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 9128
Number of HSP's gapped (non-prelim): 22
length of query: 281
length of database: 191,569,459
effective HSP length: 116
effective length of query: 165
effective length of database: 128,974,003
effective search space: 21280710495
effective search space used: 21280710495
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)