Query 023534
Match_columns 281
No_of_seqs 97 out of 104
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 04:47:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023534.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023534hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10184 DUF2358: Uncharacteri 99.9 3.5E-26 7.7E-31 184.8 13.7 107 57-167 2-113 (113)
2 TIGR02096 conserved hypothetic 99.3 1.4E-10 3E-15 91.0 12.5 111 62-174 3-122 (129)
3 cd00781 ketosteroid_isomerase 99.1 3.7E-10 7.9E-15 88.3 9.1 109 60-176 6-120 (122)
4 PF12680 SnoaL_2: SnoaL-like d 99.0 2.5E-09 5.3E-14 78.2 9.7 87 74-167 15-102 (102)
5 PF07366 SnoaL: SnoaL-like pol 99.0 6.6E-09 1.4E-13 82.3 12.8 100 71-173 15-119 (126)
6 PF07858 LEH: Limonene-1,2-epo 97.7 0.00029 6.3E-09 59.4 10.0 107 60-174 4-117 (125)
7 KOG4457 Uncharacterized conser 97.7 0.00022 4.7E-09 64.1 8.4 111 57-168 37-165 (202)
8 PRK08241 RNA polymerase factor 97.4 0.0017 3.8E-08 60.2 10.8 127 35-173 167-325 (339)
9 TIGR02960 SigX5 RNA polymerase 97.1 0.0087 1.9E-07 54.9 12.0 128 35-174 156-316 (324)
10 PF13474 SnoaL_3: SnoaL-like d 94.0 0.93 2E-05 34.4 9.9 77 61-137 3-86 (121)
11 cd00531 NTF2_like Nuclear tran 94.0 1.2 2.5E-05 32.8 10.1 105 61-172 3-124 (124)
12 TIGR02246 conserved hypothetic 93.7 2.1 4.5E-05 33.0 11.6 78 58-135 5-90 (128)
13 COG4319 Ketosteroid isomerase 93.7 0.71 1.5E-05 40.1 9.7 97 57-159 10-116 (137)
14 COG5485 Predicted ester cyclas 89.2 1.4 3E-05 38.2 6.5 87 76-170 27-120 (131)
15 PF14534 DUF4440: Domain of un 86.9 6.8 0.00015 28.7 8.3 76 73-157 18-98 (107)
16 COG3631 Ketosteroid isomerase- 85.8 11 0.00024 32.0 10.1 112 58-176 5-126 (133)
17 PRK09636 RNA polymerase sigma 67.1 55 0.0012 30.1 9.7 74 35-109 129-235 (293)
18 PF13577 SnoaL_4: SnoaL-like d 62.1 50 0.0011 25.3 7.2 77 60-136 10-94 (127)
19 PF02136 NTF2: Nuclear transpo 55.9 84 0.0018 24.2 7.6 62 74-137 20-86 (118)
20 PRK14659 acpS 4'-phosphopantet 49.3 5.3 0.00012 32.9 -0.1 58 190-269 55-114 (122)
21 COG4308 LimA Limonene-1,2-epox 46.9 51 0.0011 28.7 5.4 107 54-174 11-120 (130)
22 PF12158 DUF3592: Protein of u 41.1 25 0.00055 28.2 2.6 19 215-234 95-113 (148)
23 KOG2546 Abl interactor ABI-1, 40.6 14 0.00031 37.8 1.3 84 74-163 90-178 (483)
24 PF06764 DUF1223: Protein of u 31.0 38 0.00082 30.8 2.4 30 164-193 32-62 (202)
25 PF01726 LexA_DNA_bind: LexA D 25.9 15 0.00033 27.6 -0.9 25 40-64 28-52 (65)
26 TIGR02957 SigX4 RNA polymerase 23.9 3.3E+02 0.0071 25.1 7.2 71 35-106 122-225 (281)
27 PRK14663 acpS 4'-phosphopantet 22.7 54 0.0012 26.8 1.6 59 191-268 47-107 (116)
28 PF13670 PepSY_2: Peptidase pr 22.5 3.1E+02 0.0066 20.7 5.7 40 113-167 43-82 (83)
29 PF11120 DUF2636: Protein of u 20.8 99 0.0022 23.8 2.6 20 240-259 4-23 (62)
30 PF13547 GTA_TIM: GTA TIM-barr 20.6 78 0.0017 31.0 2.5 50 51-101 41-110 (299)
31 PF14871 GHL6: Hypothetical gl 20.3 78 0.0017 26.8 2.2 23 47-70 101-123 (132)
32 PLN02940 riboflavin kinase 20.1 83 0.0018 30.6 2.6 37 53-89 343-381 (382)
No 1
>PF10184 DUF2358: Uncharacterized conserved protein (DUF2358); InterPro: IPR018790 This entry represents a family of conserved proteins. The function is unknown.
Probab=99.94 E-value=3.5e-26 Score=184.77 Aligned_cols=107 Identities=25% Similarity=0.447 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHhhCCccccccccceEeeCCcccccchHHHHhh----HHHHh-hcCCCeEEEEEEEEecCcEEEEEEE
Q 023534 57 STARQLVRDILELREGNRALGTFAVSVKYKDPTRSFTGREKYKRR----LWATT-ALDNPSVTVQEMVMLSTSVLSIKWT 131 (281)
Q Consensus 57 ~t~r~L~~Di~~~rtgnrt~sIYApDV~FkDPfn~F~GrerYkr~----~~M~~-~L~nPrf~V~ei~~~s~~~i~irWr 131 (281)
++++.|++|+.+..+|+.+++||++||+|+||+++|+|+++|+++ .++.. ++.+|+++|++|.+.++++|++|||
T Consensus 2 ~~~~~Lr~D~~~~f~~~~~~~iY~~dv~F~Dp~~~f~g~~~Y~~~~~~l~~l~~~~~~~~~~~v~~i~~~~~~~I~~rW~ 81 (113)
T PF10184_consen 2 DVIRTLREDLPRFFTGDLDYSIYDEDVVFIDPIVSFKGLDRYKRNLWALRFLGRLFFSDPSLEVLSIEQDGEDTIRARWR 81 (113)
T ss_pred hHHHHHHHHHHHHhcCCCChhhcCCCeEEECCCCceecHHHHHHHHHHHHHHHhhccCCcEEEEEEEEECCCCEEEEEEE
Confidence 468899999999999999999999999999999999999999999 35555 6789999999998887779999999
Q ss_pred EeeecCccccccCCceEEEEEeEEEEeCCCCcEEEE
Q 023534 132 LRGKPKSIIANIGGDLIVKVYSKFTLNQISGQVIEH 167 (281)
Q Consensus 132 L~g~~klpwa~~ggrl~I~G~Sel~LN~isGrVvsH 167 (281)
++|.+++||+ |++.++|.|+|++|+ +|+|++|
T Consensus 82 ~~g~~~l~w~---p~~~~~G~S~~~ln~-~g~I~~H 113 (113)
T PF10184_consen 82 LRGVPRLPWR---PRISFDGTSTYTLNS-DGLIYRH 113 (113)
T ss_pred EEEEeCCCcC---CcEEEEEEEEEEECC-CCcEEeC
Confidence 9999999999 588899999999999 9999999
No 2
>TIGR02096 conserved hypothetical protein, steroid delta-isomerase-related. This family of proteins about 135 amino acids in length largely restricted to the Proteobacteria. This family and a delta5-3-ketosteroid isomerase from Pseudomonas testosteroni appear homologous, especially toward their respective N-termini. Members, therefore, probably are enzymes.
Probab=99.25 E-value=1.4e-10 Score=91.04 Aligned_cols=111 Identities=19% Similarity=0.289 Sum_probs=87.1
Q ss_pred HHHHHHHHh-hCC--ccccccccceEeeCCcc--cccchHHHHhh-HHHHhhcCCCeEEEEEEEEecCcEEEEEEEEeee
Q 023534 62 LVRDILELR-EGN--RALGTFAVSVKYKDPTR--SFTGREKYKRR-LWATTALDNPSVTVQEMVMLSTSVLSIKWTLRGK 135 (281)
Q Consensus 62 L~~Di~~~r-tgn--rt~sIYApDV~FkDPfn--~F~GrerYkr~-~~M~~~L~nPrf~V~ei~~~s~~~i~irWrL~g~ 135 (281)
|++.+.++- .++ ...++|++|+.|.+|.. ...|++.+++. ..++..+.+.+++++++...+++.+...|+++++
T Consensus 3 iv~~~~~a~~~~d~~~~~~~~~~d~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~g~ 82 (129)
T TIGR02096 3 LAQHWIEAFNRGDMDAVLALLAEDVLYDDNQGGRVLGGKAQLARFLAPYRTAFPDLLVDVVVCRNDEGVRVAAEWTVHGT 82 (129)
T ss_pred HHHHHHHHHHCCCHHHHHHhcCCCeEEEcCCCCcEeccHHHHHHHHHHHHHhCchhhceeEEEEecCCcEEEEEEEEeee
Confidence 344444443 333 68899999999999975 57889999998 7888999999999999755444499999999998
Q ss_pred cCccc---cccCCceEEEEEeEEEEeCCCCcEEEEeeeccCC
Q 023534 136 PKSII---ANIGGDLIVKVYSKFTLNQISGQVIEHEELWDLS 174 (281)
Q Consensus 136 ~klpw---a~~ggrl~I~G~Sel~LN~isGrVvsH~DyWD~S 174 (281)
.+-+| .+.|.++.++|.+.++|+ +|||++|++|||..
T Consensus 83 ~~g~~~g~~~~g~~~~~~~~~~~~~~--~gkI~~~~~y~D~~ 122 (129)
T TIGR02096 83 YRTAFLGLPASGKTYSIRGVTFFVFD--DGKIKRETTYYNLA 122 (129)
T ss_pred eccccCCCCCCCCEEEeeeeEEEEEe--CCEEEEEEEEecHH
Confidence 75222 122556779999999997 59999999999965
No 3
>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon. Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.
Probab=99.12 E-value=3.7e-10 Score=88.32 Aligned_cols=109 Identities=14% Similarity=0.196 Sum_probs=80.9
Q ss_pred HHHHHHHHHHh-hCC--ccccccccceEeeCCcc--cccchHHHHhh-HHHHhhcCCCeEEEEEEEEecCcEEEEEEEEe
Q 023534 60 RQLVRDILELR-EGN--RALGTFAVSVKYKDPTR--SFTGREKYKRR-LWATTALDNPSVTVQEMVMLSTSVLSIKWTLR 133 (281)
Q Consensus 60 r~L~~Di~~~r-tgn--rt~sIYApDV~FkDPfn--~F~GrerYkr~-~~M~~~L~nPrf~V~ei~~~s~~~i~irWrL~ 133 (281)
+++.+.+.++- +|| ...++|++||.|.||.. .++|++.+++. ..+.......++.+... ...++.+-+.|+++
T Consensus 6 ~~~v~~~~~a~~~~D~~~~~~l~aed~~~~~p~~~~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~ 84 (122)
T cd00781 6 KAAVQRYVEAVNAGDPEGIVALFADDATVEDPVGSPPRSGRAAIAAFYAQSLGGAKRLELTGPVR-ASHGGEAAFAFRVE 84 (122)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHcCCCeEEeCCCCCCCccCHHHHHHHHHHHhccCceEEecCcee-eecCCEEEEEEEEE
Confidence 44555566654 444 58899999999999965 49999999998 66665554555444442 33467777789887
Q ss_pred eecCccccccCCceEEEEEeEEEEeCCCCcEEEEeeeccCCCC
Q 023534 134 GKPKSIIANIGGDLIVKVYSKFTLNQISGQVIEHEELWDLSAS 176 (281)
Q Consensus 134 g~~klpwa~~ggrl~I~G~Sel~LN~isGrVvsH~DyWD~S~~ 176 (281)
.... |+.+.+.|.+.++||. +|||.+|++|||....
T Consensus 85 ~~~~------g~~~~~~~~~v~~~~~-dGkI~~~~~y~d~~~~ 120 (122)
T cd00781 85 FEWE------GQPCVVRVIDVMRFDA-DGRIVSMRAYWGPVNL 120 (122)
T ss_pred EEeC------CceEEEEEEEEEEECC-CccChHHHHhcCcccc
Confidence 6533 4557799999999998 8999999999998653
No 4
>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A ....
Probab=99.03 E-value=2.5e-09 Score=78.18 Aligned_cols=87 Identities=18% Similarity=0.393 Sum_probs=76.0
Q ss_pred ccccccccceEeeCCcccccchHHHHhh-HHHHhhcCCCeEEEEEEEEecCcEEEEEEEEeeecCccccccCCceEEEEE
Q 023534 74 RALGTFAVSVKYKDPTRSFTGREKYKRR-LWATTALDNPSVTVQEMVMLSTSVLSIKWTLRGKPKSIIANIGGDLIVKVY 152 (281)
Q Consensus 74 rt~sIYApDV~FkDPfn~F~GrerYkr~-~~M~~~L~nPrf~V~ei~~~s~~~i~irWrL~g~~klpwa~~ggrl~I~G~ 152 (281)
...++|+||+.|.+|+...+|++.|.+. ..+...+.+.+++++++ ..+++.+.+.|+..++.+ +.|.++.++|+
T Consensus 15 ~i~~~~~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gd~v~~~~~~~~~~~----~~g~~~~~~~~ 89 (102)
T PF12680_consen 15 AIAALFAPDAVFHDPGGTLRGREAIREFFEEFFESFPDIRFEIHDI-FADGDRVVVEWTVTGTTP----PTGQPISFRGC 89 (102)
T ss_dssp HHHHTEEEEEEEEETTSEEESHHHHHHHHHHHHHHEEEEEEEEEEE-EEETTEEEEEEEEEEEET----TTSCEEEEEEE
T ss_pred HHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHhcCCceEEEEEEE-EEcCCEEEEEEEEEEEEc----CCCCEEEEEEE
Confidence 5789999999999998899999999998 77778899999999997 567999999999999643 22455779999
Q ss_pred eEEEEeCCCCcEEEE
Q 023534 153 SKFTLNQISGQVIEH 167 (281)
Q Consensus 153 Sel~LN~isGrVvsH 167 (281)
+.++| . +|||++|
T Consensus 90 ~~~~~-~-dgkI~~~ 102 (102)
T PF12680_consen 90 SVFRF-E-DGKIVEH 102 (102)
T ss_dssp EEEEE-E-TTEEEEE
T ss_pred EEEEE-E-CCEEEEC
Confidence 99999 5 7999998
No 5
>PF07366 SnoaL: SnoaL-like polyketide cyclase; InterPro: IPR009959 This domain is found in SnoaL [] a polyketide cyclase involved in nogalamycin biosynthesis. This domain was formerly known as DUF1486. It adopts a distorted alpha-beta barrel fold []. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalysing intramolecular aldol condensation [].; PDB: 2GEY_C 3F9S_A 2GEX_A 3EHC_B 2F99_D 2F98_D 1SJW_A 3K0Z_B.
Probab=99.03 E-value=6.6e-09 Score=82.27 Aligned_cols=100 Identities=18% Similarity=0.307 Sum_probs=85.4
Q ss_pred hCCccccccccceEeeCCc-ccccchHHHHhh-HHHHhhcCCCeEEEEEEEEecCcEEEEEEEEeeecCcccc---ccCC
Q 023534 71 EGNRALGTFAVSVKYKDPT-RSFTGREKYKRR-LWATTALDNPSVTVQEMVMLSTSVLSIKWTLRGKPKSIIA---NIGG 145 (281)
Q Consensus 71 tgnrt~sIYApDV~FkDPf-n~F~GrerYkr~-~~M~~~L~nPrf~V~ei~~~s~~~i~irWrL~g~~klpwa---~~gg 145 (281)
.-+...++|+||+.+.+|. ..-.|++.|+.. .-+...+.|.++.+.++ ..+++.+.++|+++|+..-||. +.|.
T Consensus 15 d~~~~~~~~~~d~~~~~~~~~~~~G~~~~~~~~~~~~~afPD~~~~i~~~-~~~gd~v~~~~~~~Gth~g~~~g~~ptgk 93 (126)
T PF07366_consen 15 DLDALDELVAPDVVFHDPGPGPPVGREGFKEFLKELRAAFPDLRFEIEDV-VAEGDRVAVRWTFTGTHTGEFMGIPPTGK 93 (126)
T ss_dssp -GCHHHGTEEEEEEEEGCTTTEEEHHHHHHHHHHHHHHHSTTTEEEEEEE-EEETTEEEEEEEEEEEESSEBTTBE-TTE
T ss_pred CHHHHHHhcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEE-EEECCEEEEEEEEEEeecCCcCCcCCCCC
Confidence 3346889999999999997 799999999999 78889999999999997 4568999999999999876553 2223
Q ss_pred ceEEEEEeEEEEeCCCCcEEEEeeeccC
Q 023534 146 DLIVKVYSKFTLNQISGQVIEHEELWDL 173 (281)
Q Consensus 146 rl~I~G~Sel~LN~isGrVvsH~DyWD~ 173 (281)
++.+.|++.++++. |||++|..+||.
T Consensus 94 ~v~~~~~~~~~~~~--gkI~e~~~~~D~ 119 (126)
T PF07366_consen 94 PVEFRGMSIFRFED--GKIVEEWVYFDE 119 (126)
T ss_dssp EEEEEEEEEEEEET--TEEEEEEEEECH
T ss_pred EEEEEEEEEEEEEC--CEEEEEEEEECH
Confidence 46699999999998 999999999995
No 6
>PF07858 LEH: Limonene-1,2-epoxide hydrolase catalytic domain; InterPro: IPR013100 Epoxide hydrolases catalyse the hydrolysis of epoxides to corresponding diols, which is important in detoxification, synthesis of signal molecules, or metabolism. Limonene-1,2- epoxide hydrolase (LEH) differs from many other epoxide hydrolases in its structure and its novel one-step catalytic mechanism. Its main fold consists of a six-stranded mixed beta-sheet, with three N-terminal alpha helices packed to one side to create a pocket that extends into the protein core. A fourth helix lies in such a way that it acts as a rim to this pocket. Although mainly lined by hydrophobic residues, this pocket features a cluster of polar groups that lie at its deepest point and constitute the enzymes active site []. ; PDB: 2BNG_C 1NWW_A 1NU3_B.
Probab=97.74 E-value=0.00029 Score=59.37 Aligned_cols=107 Identities=14% Similarity=0.163 Sum_probs=72.6
Q ss_pred HHHHHHHHHHh-hCC---ccccccccc-eEeeCCcccccchHHHHhh-HHHHhhcCCCeEEEEEEEEecCcEEEEEEEEe
Q 023534 60 RQLVRDILELR-EGN---RALGTFAVS-VKYKDPTRSFTGREKYKRR-LWATTALDNPSVTVQEMVMLSTSVLSIKWTLR 133 (281)
Q Consensus 60 r~L~~Di~~~r-tgn---rt~sIYApD-V~FkDPfn~F~GrerYkr~-~~M~~~L~nPrf~V~ei~~~s~~~i~irWrL~ 133 (281)
..++++++++- .++ ....++++| ||..-|+-..+|+++..+. .-|...+....+.+|.|. .+++ +.+.+|.-
T Consensus 4 ~~vV~~F~~a~~~~D~~~a~~~~~~~d~vy~Nvplp~i~G~~~~~~~l~~~~~~~~~~e~~i~~ia-adg~-~VltER~D 81 (125)
T PF07858_consen 4 EEVVRAFLAALEDRDVDAALASLFDDDAVYHNVPLPPIRGRDAIRAFLRGFLDSLSGFEFDIHRIA-ADGD-VVLTERTD 81 (125)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHCEECC-EEEETTTEEEESHHHHHHHHHCCHCCCEEEEEEEEEEE-EETT-EEEEEEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHHhcCCCcEEEeCCCCCcccHHHHHHHHHHHhcccceeEEEEEEEe-ecCC-EEEEEeEe
Confidence 46788888886 333 345688999 9999999999999999998 666677777888999974 4354 45566665
Q ss_pred eecCccccccCCc-eEEEEEeEEEEeCCCCcEEEEeeeccCC
Q 023534 134 GKPKSIIANIGGD-LIVKVYSKFTLNQISGQVIEHEELWDLS 174 (281)
Q Consensus 134 g~~klpwa~~ggr-l~I~G~Sel~LN~isGrVvsH~DyWD~S 174 (281)
-... +.||. +.++.+-.+++. +|+|+..+||||..
T Consensus 82 ~l~~----~dG~~~~~~~V~GvfEv~--dGkI~~WRDYFD~~ 117 (125)
T PF07858_consen 82 VLRF----ADGPLRIQFPVCGVFEVR--DGKITLWRDYFDLA 117 (125)
T ss_dssp EEEE----TTTTEEEEEEEEEEEEEE--TTEEEEEEEE--HH
T ss_pred eeee----ecCCeEEEEEEEEEEEEE--CCEEEEEeccCCHH
Confidence 4322 11222 334444444444 59999999999964
No 7
>KOG4457 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.00022 Score=64.12 Aligned_cols=111 Identities=15% Similarity=0.220 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHhhCCccccccccceEeeCCcccc--cchHHHHhhHHHHhhc-----CCCeEEEEEEEEe-cCcEEEE
Q 023534 57 STARQLVRDILELREGNRALGTFAVSVKYKDPTRSF--TGREKYKRRLWATTAL-----DNPSVTVQEMVML-STSVLSI 128 (281)
Q Consensus 57 ~t~r~L~~Di~~~rtgnrt~sIYApDV~FkDPfn~F--~GrerYkr~~~M~~~L-----~nPrf~V~ei~~~-s~~~i~i 128 (281)
-+-..|+.-+=.+--....+++|++||.|.|-.... +|++-|...--|-+++ -..+|+|..+-.- ++-++.+
T Consensus 37 ~~yerLr~tlPklF~~~~DYS~Ys~dvvf~n~I~~v~t~G~~~y~~~~~~~rtlg~~~~ahv~~EvL~vt~h~d~~Tvr~ 116 (202)
T KOG4457|consen 37 HVYERLRETLPKLFRRRMDYSFYSKDVVFDNQIFSVETRGIEQYMSHFGMIRTLGQVFLAHVEMEVLSVTPHIDEGTVRC 116 (202)
T ss_pred HHHHHHHHHhHHHHhhcccceeecCCeEEeecccceeehhHHHHHHHHHHHHHHHHHhhhheeeEeEeecccCCCceEEE
Confidence 334445555544444557899999999999987665 5777777653455554 4556666654222 5688999
Q ss_pred EEEEeeecC--ccccccCCc-------eE-EEEEeEEEEeCCCCcEEEEe
Q 023534 129 KWTLRGKPK--SIIANIGGD-------LI-VKVYSKFTLNQISGQVIEHE 168 (281)
Q Consensus 129 rWrL~g~~k--lpwa~~ggr-------l~-I~G~Sel~LN~isGrVvsH~ 168 (281)
|||+.|.+- ..|+.---+ .. .+|-|.+.+|. +|+|+.|+
T Consensus 117 RWRv~gvsv~~~f~~~~l~~~de~~~~~swyDgYSv~yl~~-~GlI~kh~ 165 (202)
T KOG4457|consen 117 RWRVKGVSVTRIFMNPRLLRFDERMQNLSWYDGYSVLYLDG-NGLIYKHT 165 (202)
T ss_pred EEEEecceEeeeeechHHhhHHHHhcccccccceeEEEECC-CceEEeee
Confidence 999998543 344421111 11 67999999999 99999997
No 8
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=97.38 E-value=0.0017 Score=60.19 Aligned_cols=127 Identities=11% Similarity=0.113 Sum_probs=85.0
Q ss_pred hcCCCccccCCcceecCChhHH--------------------------HHHHHHHHHHHHHh-hCC--ccccccccceEe
Q 023534 35 VDGMDFGELCNEFECISSPLVE--------------------------STARQLVRDILELR-EGN--RALGTFAVSVKY 85 (281)
Q Consensus 35 v~~~~f~~~Cd~F~c~ssP~VE--------------------------~t~r~L~~Di~~~r-tgn--rt~sIYApDV~F 85 (281)
++||+..|++...-+. ...|. ...+++++.+.++- +|+ ...+++++||.+
T Consensus 167 ~~g~s~~EIA~~lgis-~~tVk~~l~RAr~~Lr~~~~~~~~~~~~~~~~~~~~~v~~~~~A~~~gD~~~l~~lla~Dv~~ 245 (339)
T PRK08241 167 VLGWSAAEVAELLDTS-VAAVNSALQRARATLAERGPSAADTLREPDDPEERALLARYVAAFEAYDVDALVALLTEDATW 245 (339)
T ss_pred hhCCCHHHHHHHhCCC-HHHHHHHHHHHHHHHhhcCCCcccccCCCCChHHHHHHHHHHHHHhcCCHHHHHHHhcCCEEE
Confidence 7899988888665431 11222 23344555555553 555 478999999999
Q ss_pred eCCccc--ccchHHHHhh-HHHHhhcCCCeEEEEEEEEecCcEEEEEEEEeeecCccccccCCceEEEEEeEEEEeCCCC
Q 023534 86 KDPTRS--FTGREKYKRR-LWATTALDNPSVTVQEMVMLSTSVLSIKWTLRGKPKSIIANIGGDLIVKVYSKFTLNQISG 162 (281)
Q Consensus 86 kDPfn~--F~GrerYkr~-~~M~~~L~nPrf~V~ei~~~s~~~i~irWrL~g~~klpwa~~ggrl~I~G~Sel~LN~isG 162 (281)
.+|-.. ++|++++... ..+......+.+.+..+ ..+++.+.+.+. . + ..|+.+.+.|...+++. +|
T Consensus 246 ~~p~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~-~~~g~~v~~~~~---~-~----~~g~~~~~~~v~v~~v~--dG 314 (339)
T PRK08241 246 SMPPFPLWYRGRDAIAAFLAGQCPGAGCGGSRLVPT-RANGQPAFAQYM---R-D----PDGGGHRPWALHVLELR--GG 314 (339)
T ss_pred EcCCCCCcccCHHHHHHHHHhhccccCCCceEEEEe-ecCCCeEEEEEE---E-c----CCCCeeecceEEEEEEe--CC
Confidence 999876 9999998877 54433333345666554 345666666542 1 1 11344668899999997 59
Q ss_pred cEEEEeeeccC
Q 023534 163 QVIEHEELWDL 173 (281)
Q Consensus 163 rVvsH~DyWD~ 173 (281)
||++.++|||.
T Consensus 315 kI~~~~~y~d~ 325 (339)
T PRK08241 315 RIAHVTSFLDT 325 (339)
T ss_pred EEEEEEEEcCh
Confidence 99999999997
No 9
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=97.08 E-value=0.0087 Score=54.86 Aligned_cols=128 Identities=10% Similarity=0.064 Sum_probs=85.1
Q ss_pred hcCCCccccCCcceecCChhHHHH---------------------------HHHHHHHHHHHh-hCC--ccccccccceE
Q 023534 35 VDGMDFGELCNEFECISSPLVEST---------------------------ARQLVRDILELR-EGN--RALGTFAVSVK 84 (281)
Q Consensus 35 v~~~~f~~~Cd~F~c~ssP~VE~t---------------------------~r~L~~Di~~~r-tgn--rt~sIYApDV~ 84 (281)
++||+..|++...-+ |...|.+. .+++.+.+.++- +|| .+.++++|||.
T Consensus 156 ~~g~s~~EIA~~lgi-s~~tV~~~l~Rar~~Lr~~l~~~~~~~~~~~~~~~~~~~v~~~~~a~~~gD~~~l~~Lla~Dv~ 234 (324)
T TIGR02960 156 VLGWRAAETAELLGT-STASVNSALQRARATLDEVGPSARDDQLAQPPSPEEQDLLERYIAAFESYDLDALTALLHEDAI 234 (324)
T ss_pred HhCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHhcCCeE
Confidence 789998888765432 22333332 233344444442 565 47889999999
Q ss_pred eeCCc--ccccchHHHHhh-HHHHhhcCCCeEEEEEEEEecCcEEEEEEEEeeecCccccccCCceEEEEEeEEEEeCCC
Q 023534 85 YKDPT--RSFTGREKYKRR-LWATTALDNPSVTVQEMVMLSTSVLSIKWTLRGKPKSIIANIGGDLIVKVYSKFTLNQIS 161 (281)
Q Consensus 85 FkDPf--n~F~GrerYkr~-~~M~~~L~nPrf~V~ei~~~s~~~i~irWrL~g~~klpwa~~ggrl~I~G~Sel~LN~is 161 (281)
|.+|. ..++|++++.+. ..+.+.-..+.+.+... ..+++.+.+.|.... .++.+.+.|...+++ . +
T Consensus 235 ~~~p~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~v~~~~~~--------~~~~~~~~~v~~~~~-~-d 303 (324)
T TIGR02960 235 WEMPPYTLWYQGRPAIVGFIHTVCPGEGAAGMRLLPT-IANGQPAAAMYMRRP--------DAERHTAFQLHVLEI-R-G 303 (324)
T ss_pred EEcCCCCcceeCHHHHHHHHHHhcccccCCceeEEEe-eecCCceEEEEEEcC--------CCCeeeeeEEEEEEE-c-C
Confidence 99997 449999998876 44411112245555554 366888888774222 134577899999999 5 8
Q ss_pred CcEEEEeeeccCC
Q 023534 162 GQVIEHEELWDLS 174 (281)
Q Consensus 162 GrVvsH~DyWD~S 174 (281)
|||++...|||-+
T Consensus 304 GkI~~~~~~~~~~ 316 (324)
T TIGR02960 304 GRITHVTAFLDGP 316 (324)
T ss_pred CcEEEEEEEcCCH
Confidence 9999999999965
No 10
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=93.99 E-value=0.93 Score=34.43 Aligned_cols=77 Identities=16% Similarity=0.226 Sum_probs=52.7
Q ss_pred HHHHHHHHHh-hCC--ccccccccceEeeCCc--ccccchHHHHhh-HHHHhhcCCCeEEEEEEEE-ecCcEEEEEEEEe
Q 023534 61 QLVRDILELR-EGN--RALGTFAVSVKYKDPT--RSFTGREKYKRR-LWATTALDNPSVTVQEMVM-LSTSVLSIKWTLR 133 (281)
Q Consensus 61 ~L~~Di~~~r-tgn--rt~sIYApDV~FkDPf--n~F~GrerYkr~-~~M~~~L~nPrf~V~ei~~-~s~~~i~irWrL~ 133 (281)
++.+.+.++- +|| .+.++|++|+.+-+|. ..++|++.+++. ...+..+...+++..++.. .+++.+.+.+.++
T Consensus 3 ~~~~~~~~a~~~~D~~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~~~~~~~ 82 (121)
T PF13474_consen 3 ALLEEWIEAFERGDIDALLSLFSDDFVFFGTGPGEIWRGREAIRAYFERDFESFRPISIEFEDVQVSVSGDVAVVTGEFR 82 (121)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHEEEEEEEEETTSSSEEESHHHHHHHHHHHHHTHSEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCHHHHHHhhCCCEEEEcCCCCceECCHHHHHHHHHHHhhhCceEEEEEEEEEEEECCCEEEEEEEEE
Confidence 4445555553 555 7999999999998754 567899999998 5444555666666666432 2578888888776
Q ss_pred eecC
Q 023534 134 GKPK 137 (281)
Q Consensus 134 g~~k 137 (281)
...+
T Consensus 83 ~~~~ 86 (121)
T PF13474_consen 83 LRFR 86 (121)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6543
No 11
>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea
Probab=93.96 E-value=1.2 Score=32.78 Aligned_cols=105 Identities=17% Similarity=0.160 Sum_probs=60.2
Q ss_pred HHHHHHHHHh-hCC--ccccccccceEeeCCc-----ccccchHHHHhh-HHHHhh-cCCCeE-EEEEEEEecC---cEE
Q 023534 61 QLVRDILELR-EGN--RALGTFAVSVKYKDPT-----RSFTGREKYKRR-LWATTA-LDNPSV-TVQEMVMLST---SVL 126 (281)
Q Consensus 61 ~L~~Di~~~r-tgn--rt~sIYApDV~FkDPf-----n~F~GrerYkr~-~~M~~~-L~nPrf-~V~ei~~~s~---~~i 126 (281)
++...+.++- +++ .+..+|++|++|..|. ..+.|++++... ..+... ...-.+ .-..+...++ ..+
T Consensus 3 ~l~~~y~~~ld~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~ 82 (124)
T cd00531 3 QFLYRYARLLDAGDREWLALLYADDAYFEPPGGDGLIYPDDGREAIEDRVRRLPFGPSRTRHLVSNVDVQPGDDGEGVVV 82 (124)
T ss_pred HHHHHHHHHhCCchHHHHHhhCcCcEEEEEccCCEEEEcCChHHHHHHHHHhcCCCCCceEEEEEeEEEEeCCCCEEEEE
Confidence 3444444443 233 4889999999999998 688999988887 433321 111111 1222222222 456
Q ss_pred EEEEEEeeecCccccccCCceEEEEEeEEEE---eCCCCcEEEEeeecc
Q 023534 127 SIKWTLRGKPKSIIANIGGDLIVKVYSKFTL---NQISGQVIEHEELWD 172 (281)
Q Consensus 127 ~irWrL~g~~klpwa~~ggrl~I~G~Sel~L---N~isGrVvsH~DyWD 172 (281)
...|.+.+... +....+.|.-..++ |. .++|.+.+-+|+
T Consensus 83 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g-~w~i~~~~~~~~ 124 (124)
T cd00531 83 SVFGVLRTRGD------GEQDVFAGGQTFVLRPQGG-GGKIANRRFRLD 124 (124)
T ss_pred EEEEEEEEccC------CceeEEEEEEEEEEEEeCC-EEEEEEEEEecC
Confidence 67788777643 11223344333333 44 789999988885
No 12
>TIGR02246 conserved hypothetical protein. This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.
Probab=93.73 E-value=2.1 Score=33.01 Aligned_cols=78 Identities=15% Similarity=0.108 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHh-hCC--ccccccccceEee-CCcccccchHHHHhh-HHHHhhcCCC---eEEEEEEEEecCcEEEEE
Q 023534 58 TARQLVRDILELR-EGN--RALGTFAVSVKYK-DPTRSFTGREKYKRR-LWATTALDNP---SVTVQEMVMLSTSVLSIK 129 (281)
Q Consensus 58 t~r~L~~Di~~~r-tgn--rt~sIYApDV~Fk-DPfn~F~GrerYkr~-~~M~~~L~nP---rf~V~ei~~~s~~~i~ir 129 (281)
-++++...+.++- +++ ...++|++|+.|. -|...++|++.+.+. .........+ +++..++...+++.+...
T Consensus 5 ~i~~l~~~~~~a~~~~D~~~~~~~~~~Da~~~~~~g~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~A~~~ 84 (128)
T TIGR02246 5 AIRALVATWEAAWAAGDAEGFADLFTPDGVFVTVPGQVWKGREAIAAAHEAFLAGPYKGTRVTIDVIEVRFLGPDLAIVH 84 (128)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHhhCCCceEECCCCCeecCHHHHHHHHHHHhcccCCCcEEEeeeEEEEecCCCEEEEE
Confidence 3455566666664 444 6899999999998 445578999999987 4333333332 444456554555666655
Q ss_pred EEEeee
Q 023534 130 WTLRGK 135 (281)
Q Consensus 130 WrL~g~ 135 (281)
...+..
T Consensus 85 ~~~~~~ 90 (128)
T TIGR02246 85 AIQTIT 90 (128)
T ss_pred EEEEEE
Confidence 444443
No 13
>COG4319 Ketosteroid isomerase homolog [Function unknown]
Probab=93.72 E-value=0.71 Score=40.10 Aligned_cols=97 Identities=12% Similarity=0.148 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHh---hCCccccccccceEeeCCc-ccccchHHHHhh--HHHHhhcCCCeEEEEEEEE-ecCcEEEE-
Q 023534 57 STARQLVRDILELR---EGNRALGTFAVSVKYKDPT-RSFTGREKYKRR--LWATTALDNPSVTVQEMVM-LSTSVLSI- 128 (281)
Q Consensus 57 ~t~r~L~~Di~~~r---tgnrt~sIYApDV~FkDPf-n~F~GrerYkr~--~~M~~~L~nPrf~V~ei~~-~s~~~i~i- 128 (281)
+..|....|..++. .-+...+.|++|+.|=+|. -.+.|++.|+++ .++..+-..++|++.+++. .++++++.
T Consensus 10 ~~I~a~i~dw~~Av~a~D~~av~~~YtdDav~f~~~~~~~~Gk~~i~k~~~~~~~~~~~~~~f~~~el~v~~~GD~a~~~ 89 (137)
T COG4319 10 DAIRAAIADWAAAVRAKDADAVADFYTDDAVVFPPPGLQRKGKAAIRKAFEGIFAMGIGPLKFTLEELQVHESGDVAFVT 89 (137)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHhcCCceEEecCCCCcccCHHHHHHHHHHHHHhccCCCcceeeeeeeeccCCEEEEE
Confidence 45556666644442 4446888999999999996 889999999999 4666777899999999741 36787655
Q ss_pred -EEEEeeecCccccccCCceE-EEEEeEEEEeC
Q 023534 129 -KWTLRGKPKSIIANIGGDLI-VKVYSKFTLNQ 159 (281)
Q Consensus 129 -rWrL~g~~klpwa~~ggrl~-I~G~Sel~LN~ 159 (281)
.|.+.++-+ +|+.. ..|.-++.|--
T Consensus 90 ~~~~~~~~~~------dg~~~~~~~Rat~v~rK 116 (137)
T COG4319 90 ALLLLTGTKK------DGPPADLAGRATYVFRK 116 (137)
T ss_pred EeeeeeccCC------CCcchhheeeeEEEEEE
Confidence 566666523 34433 56666666653
No 14
>COG5485 Predicted ester cyclase [General function prediction only]
Probab=89.21 E-value=1.4 Score=38.18 Aligned_cols=87 Identities=16% Similarity=0.257 Sum_probs=59.7
Q ss_pred ccccccceEeeCCcccccchHHHHhh-HHHHhhcCCCeEEEEEEEEecCcEEEEEEEEeeecC-----ccccccCCceEE
Q 023534 76 LGTFAVSVKYKDPTRSFTGREKYKRR-LWATTALDNPSVTVQEMVMLSTSVLSIKWTLRGKPK-----SIIANIGGDLIV 149 (281)
Q Consensus 76 ~sIYApDV~FkDPfn~F~GrerYkr~-~~M~~~L~nPrf~V~ei~~~s~~~i~irWrL~g~~k-----lpwa~~ggrl~I 149 (281)
.+-+-+|+.+-. -.-.|++.|..| .-++..+.+-+|++..+... ++.+-++=+|.++++ +|-+ |-++.
T Consensus 27 l~~fv~~~v~~n--g~~~glsgyr~ml~~df~aiPdl~f~ie~lvae-~~~vaarl~Fdctp~G~i~Gip~n--GkrV~- 100 (131)
T COG5485 27 LGSFVDGNVMHN--GRLQGLSGYREMLVRDFSAIPDLSFEIERLVAE-GDRVAARLTFDCTPSGEIMGIPPN--GKRVR- 100 (131)
T ss_pred cccCCcCeeeeC--CceechHHHHHHHHhhHhhCCCcceEEEEEeec-CCceEEEEEEccCcCceEeccCCC--CcEEE-
Confidence 344555555543 255799999999 78999999999999998655 888999999999877 2211 12222
Q ss_pred EEEeEEEEe-CCCCcEEEEeee
Q 023534 150 KVYSKFTLN-QISGQVIEHEEL 170 (281)
Q Consensus 150 ~G~Sel~LN-~isGrVvsH~Dy 170 (281)
-|+..|. =++|||++|.-.
T Consensus 101 --Fse~vfy~f~~~KI~~vwsv 120 (131)
T COG5485 101 --FSENVFYEFENGKIVEVWSV 120 (131)
T ss_pred --eehhhhhhhcCCeEEeeehh
Confidence 2333333 247999987543
No 15
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=86.94 E-value=6.8 Score=28.68 Aligned_cols=76 Identities=13% Similarity=0.135 Sum_probs=46.9
Q ss_pred CccccccccceEeeCCcccccchHHHHhh-HHHHhhcCCCe--EEEEEEEEecCcE--EEEEEEEeeecCccccccCCce
Q 023534 73 NRALGTFAVSVKYKDPTRSFTGREKYKRR-LWATTALDNPS--VTVQEMVMLSTSV--LSIKWTLRGKPKSIIANIGGDL 147 (281)
Q Consensus 73 nrt~sIYApDV~FkDPfn~F~GrerYkr~-~~M~~~L~nPr--f~V~ei~~~s~~~--i~irWrL~g~~klpwa~~ggrl 147 (281)
....++|+||+.|-.|.-...|++.+.+. .- .....+. +...+++.. ++. +..+|++..... |+.+
T Consensus 18 ~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~~~--~~~~~~~~~~~~~~v~~~-gd~a~~~~~~~~~~~~~------g~~~ 88 (107)
T PF14534_consen 18 DALASLYADDFVFVGPGGTILGKEAILAAFKS--GFARFSSIKFEDVEVRVL-GDTAVVRGRWTFTWRGD------GEPV 88 (107)
T ss_dssp HHHHTTEEEEEEEEETTSEEEEHHHHHHHHHH--HCEEEEEEEEEEEEEEEE-TTEEEEEEEEEEEETTT------TEEE
T ss_pred HHHHhhhCCCEEEECCCCCEeCHHHHHHHHhh--ccCCCceEEEEEEEEEEE-CCEEEEEEEEEEEEecC------CceE
Confidence 36889999999999999988899988776 32 2233344 444444434 555 445566655322 2234
Q ss_pred EEEEEeEEEE
Q 023534 148 IVKVYSKFTL 157 (281)
Q Consensus 148 ~I~G~Sel~L 157 (281)
.++|.....+
T Consensus 89 ~~~~~~~~v~ 98 (107)
T PF14534_consen 89 TIRGRFTSVW 98 (107)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEE
Confidence 4666555544
No 16
>COG3631 Ketosteroid isomerase-related protein [General function prediction only]
Probab=85.81 E-value=11 Score=32.00 Aligned_cols=112 Identities=17% Similarity=0.192 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHh-hCC--ccccccccceEeeCCc-----ccccc-hHHHHhhH-HHHhhcCCCeEEEEEEEEecCcEEE
Q 023534 58 TARQLVRDILELR-EGN--RALGTFAVSVKYKDPT-----RSFTG-REKYKRRL-WATTALDNPSVTVQEMVMLSTSVLS 127 (281)
Q Consensus 58 t~r~L~~Di~~~r-tgn--rt~sIYApDV~FkDPf-----n~F~G-rerYkr~~-~M~~~L~nPrf~V~ei~~~s~~~i~ 127 (281)
-.++++++..++. .|+ .+..++++|+.|.=|. -.++| .+...... -..+.+...++++..+...++..+-
T Consensus 5 ~~~~~v~~~f~a~~~GD~~~~~~l~a~D~v~~~p~~~~~~~~~~~g~~~~~~~~~~~~r~~~~~~~~~~~~~~~gD~~~~ 84 (133)
T COG3631 5 DNTDLVRRYFAALSRGDLDGLLALLAEDVVWEVPGTPPLSGTFRGGVAIRRDVFALLPRLIEDGRFTVETVYVSGDPVGA 84 (133)
T ss_pred hhhhHHHHHHHHHhcCCHHHHHhhccCceEEEeeCCCCCccccccchhhhhHHhhhChhhcccccccceEEEEcCCceEE
Confidence 3467788887776 555 5899999999997443 34554 33333332 2234455888888887766666676
Q ss_pred EEEEEeeecCccccccCCceEEEEEeEEEEeCCCCcEEEEeeeccCCCC
Q 023534 128 IKWTLRGKPKSIIANIGGDLIVKVYSKFTLNQISGQVIEHEELWDLSAS 176 (281)
Q Consensus 128 irWrL~g~~klpwa~~ggrl~I~G~Sel~LN~isGrVvsH~DyWD~S~~ 176 (281)
+-|+-....+ + |..+.=.-..-+++- +|+|++=++|||.-+.
T Consensus 85 v~~~~~~~~~----~-G~~~~~~~~~v~~vr--dGrI~~~~~y~D~~~~ 126 (133)
T COG3631 85 VFRTRGRVSR----T-GKPYENRYAFVIRVR--DGRITRYREYVDTLAL 126 (133)
T ss_pred EEEecCcccc----c-CceeecceEEEEEEe--CCEEEEEEEEechHhH
Confidence 7777654433 1 333332233344443 6999999999997543
No 17
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=67.07 E-value=55 Score=30.13 Aligned_cols=74 Identities=23% Similarity=0.283 Sum_probs=49.7
Q ss_pred hcCCCccccCCcceecCChhHHHHHH---------------------HHHHHHHHHh-hCC--ccccccccceEee-CC-
Q 023534 35 VDGMDFGELCNEFECISSPLVESTAR---------------------QLVRDILELR-EGN--RALGTFAVSVKYK-DP- 88 (281)
Q Consensus 35 v~~~~f~~~Cd~F~c~ssP~VE~t~r---------------------~L~~Di~~~r-tgn--rt~sIYApDV~Fk-DP- 88 (281)
++||++.|++...-| |..+|.+.+. .+.+.+.++- .|+ .+.+++++||.|. |+
T Consensus 129 ~~g~s~~EIA~~lg~-s~~tVk~~l~RAr~~Lr~~~~~~~~~~~~~~~~v~~f~~A~~~gD~~~l~~Lla~Dv~~~~dgg 207 (293)
T PRK09636 129 VFGVPFDEIASTLGR-SPAACRQLASRARKHVRAARPRFPVSDEEGAELVEAFFAALASGDLDALVALLAPDVVLHADGG 207 (293)
T ss_pred HhCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHhhCeEEEecCC
Confidence 799999999988765 3334444332 2333444332 666 6899999999998 65
Q ss_pred ------cccccchHHHHhh-HHHHhhcC
Q 023534 89 ------TRSFTGREKYKRR-LWATTALD 109 (281)
Q Consensus 89 ------fn~F~GrerYkr~-~~M~~~L~ 109 (281)
..-+.|+++..+. ..+...+.
T Consensus 208 g~~~~~~~~~~G~~~v~~~l~~~~~~~~ 235 (293)
T PRK09636 208 GKVPTALRPIYGADKVARFFLGLARRYG 235 (293)
T ss_pred CccCCCCccccCHHHHHHHHHHHhhhcc
Confidence 3457899998887 55555443
No 18
>PF13577 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RFR_A 3B8L_F 2CHC_A 3A76_A 3EF8_B.
Probab=62.14 E-value=50 Score=25.26 Aligned_cols=77 Identities=9% Similarity=0.081 Sum_probs=47.0
Q ss_pred HHHHHHHHHHh-h--CCccccccccceEeeCCc---ccccchHHHHhh-HHHHh-hcCCCeEEEEEEEEecCcEEEEEEE
Q 023534 60 RQLVRDILELR-E--GNRALGTFAVSVKYKDPT---RSFTGREKYKRR-LWATT-ALDNPSVTVQEMVMLSTSVLSIKWT 131 (281)
Q Consensus 60 r~L~~Di~~~r-t--gnrt~sIYApDV~FkDPf---n~F~GrerYkr~-~~M~~-~L~nPrf~V~ei~~~s~~~i~irWr 131 (281)
+.+...+..+. + .....++|++|+.|.=|- ..++|++.+.++ ..... ......+......-.+++++..+|.
T Consensus 10 ~~l~~~~~~~~D~~~~~~~~~lft~d~~~~~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~H~~~~~~v~~dgd~A~~~~~ 89 (127)
T PF13577_consen 10 RDLIARYARALDTGDWEEWADLFTEDAVFDFPGFGFGRYRGRDAIRAFLRARFDGFAATRHMVTNPVVDVDGDTATVRSY 89 (127)
T ss_dssp HHHHHHHHHHHHTT-HHHHHTTEEEEEEEEETTTCEEEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHhhCCCHHHHHhccCCcEEEEEeCccccccCCHHHHHHHHHHhcccccceeEEccceEEEEcCCEEEEEEE
Confidence 34444444443 2 336899999999998774 589999999997 42222 1111111111111236789999999
Q ss_pred Eeeec
Q 023534 132 LRGKP 136 (281)
Q Consensus 132 L~g~~ 136 (281)
+....
T Consensus 90 ~~~~~ 94 (127)
T PF13577_consen 90 VLATH 94 (127)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98764
No 19
>PF02136 NTF2: Nuclear transport factor 2 (NTF2) domain; InterPro: IPR002075 Nuclear transport factor 2 (NTF2) is a homodimer which stimulates efficient nuclear import of a cargo protein. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity []. This entry represent the main structural domain of NTF2 and related domains which are found in other nuclear import proteins.; GO: 0006810 transport, 0005622 intracellular; PDB: 3UJM_B 1JKG_B 1JN5_B 1M98_A 3MG1_A 3MG2_A 3MG3_B 2Z76_A 2Z7A_D 2Z77_A ....
Probab=55.95 E-value=84 Score=24.24 Aligned_cols=62 Identities=15% Similarity=0.023 Sum_probs=40.1
Q ss_pred ccccccccceEeeCCccc--ccchHHHHhh-HHHHhhcCCCeEEEEEEEEe--cCcEEEEEEEEeeecC
Q 023534 74 RALGTFAVSVKYKDPTRS--FTGREKYKRR-LWATTALDNPSVTVQEMVML--STSVLSIKWTLRGKPK 137 (281)
Q Consensus 74 rt~sIYApDV~FkDPfn~--F~GrerYkr~-~~M~~~L~nPrf~V~ei~~~--s~~~i~irWrL~g~~k 137 (281)
.+..+|++|+-+-++.-. ++|++.+.+. ..+-... .++.|..+... ......+-+...|..+
T Consensus 20 ~L~~~Y~~~~s~~~~~~~~~~~G~~~I~~~~~~l~~~~--~~~~i~~~d~qp~~~~~~~i~i~v~G~~~ 86 (118)
T PF02136_consen 20 GLHKLYHDDASFLTWNGNRPVVGREAIQEFFQSLPATG--VQHRITSVDCQPSPSSDGSILITVTGQFK 86 (118)
T ss_dssp GGGGGEEEEEEEEEETTECEEESHHHHHHHHHHHTTSS--EEEEEEEEEEEEEEECCSEEEEEEEEEEE
T ss_pred HHHHHHcCCCeeecCCCchhhhhHHHHHHHHhcCCCcc--cEEEecccccccccccCCcEEEEEEeEEE
Confidence 478999888888888777 9999999887 3222221 26777776544 1233445555666554
No 20
>PRK14659 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=49.27 E-value=5.3 Score=32.87 Aligned_cols=58 Identities=24% Similarity=0.360 Sum_probs=36.6
Q ss_pred HHHhhhhccchHHHHHhhhhccccc--ccccccccCCCCCCcccccCCCCcccchHHHHHHHHHHHHHHHHHhhcccchh
Q 023534 190 LYATTEAGKDSFDLINNLKSKISTE--QENLGIYPDPSGDPTKVSSDSRCFCFCFCLTSNVIYIAFASVITLSITHSKHY 267 (281)
Q Consensus 190 ~~a~~e~~kd~~~~~~~~~~~~~~~--~e~~~iy~dp~~DP~kffq~~d~~~~d~~~~~~v~~~~~~~v~~l~~~~~~~~ 267 (281)
.||++||.- |-+...++.+ =.+.+|+.||+|-|.=.+.+.-. + --+.++|+|..+|
T Consensus 55 rwaaKEA~~------KAlg~g~~~~~~~~di~i~~~~~g~P~v~l~~~~~---~-------------~~i~vSiSh~~~y 112 (122)
T PRK14659 55 RFAAKEAYV------KALGTGFGRGIKMKDISVYNDLYGKPQITVSKSNI---D-------------HKIELSLSDDGDY 112 (122)
T ss_pred HHHHHHHHH------HHhccCcCcCccccEEEEEECCCCCeEEEECCccc---c-------------cEEEEEEEcCCCc
Confidence 388888853 3333333333 24468999999999877765421 1 2346889999887
Q ss_pred HH
Q 023534 268 EL 269 (281)
Q Consensus 268 ~~ 269 (281)
=+
T Consensus 113 a~ 114 (122)
T PRK14659 113 AI 114 (122)
T ss_pred EE
Confidence 43
No 21
>COG4308 LimA Limonene-1,2-epoxide hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=46.88 E-value=51 Score=28.69 Aligned_cols=107 Identities=9% Similarity=0.006 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHHHHhhCCccccccccceEee-CCcccccchHHHHhh-H-HHHhhcCCCeEEEEEEEEecCcEEEEEE
Q 023534 54 LVESTARQLVRDILELREGNRALGTFAVSVKYK-DPTRSFTGREKYKRR-L-WATTALDNPSVTVQEMVMLSTSVLSIKW 130 (281)
Q Consensus 54 ~VE~t~r~L~~Di~~~rtgnrt~sIYApDV~Fk-DPfn~F~GrerYkr~-~-~M~~~L~nPrf~V~ei~~~s~~~i~irW 130 (281)
.||.-++-+.+|=. .+....++.+|-++. -|+-..+|+++-..+ . .|..- -.-.|.|+.| +.++..+..+
T Consensus 11 ~V~aF~aA~~~~d~----~~avr~~~~~d~v~~n~gis~i~G~~~~ia~l~~~~~~~-~~~ef~I~ri-Aadg~~VltE- 83 (130)
T COG4308 11 TVEAFLAALQEDDG----DAAVRRLGTPDTVYNNVGISTIHGPAETIALLRPRMAGI-LGFEFKILRI-AADGGAVLTE- 83 (130)
T ss_pred HHHHHHHHHHhcCc----cHHHHHhcCCCeeeccCCcccccchhhhhhhhccccCCc-ceeEEEEEEE-ecccceehhh-
Confidence 56666555554422 223445565555554 468899999998887 4 33333 3356888886 4445444332
Q ss_pred EEeeecCccccccCCceEEEEEeEEEEeCCCCcEEEEeeeccCC
Q 023534 131 TLRGKPKSIIANIGGDLIVKVYSKFTLNQISGQVIEHEELWDLS 174 (281)
Q Consensus 131 rL~g~~klpwa~~ggrl~I~G~Sel~LN~isGrVvsH~DyWD~S 174 (281)
|+....--| ...++.+.|.=|+ .+|||+..+||.|+-
T Consensus 84 R~D~~~~g~---~~~~~~V~GvfEV----~~~rI~~WRDYFDv~ 120 (130)
T COG4308 84 RLDARIDGP---LWVQFWVCGVFEV----EDGRIVLWRDYFDVN 120 (130)
T ss_pred hhhhhccCC---cEEEEEEEEEEEE----eCCEEEeehhhhhHH
Confidence 333221111 0113335555555 479999999999964
No 22
>PF12158 DUF3592: Protein of unknown function (DUF3592); InterPro: IPR021994 This family of proteins is functionally uncharacterised.This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 150 and 242 amino acids in length.
Probab=41.06 E-value=25 Score=28.23 Aligned_cols=19 Identities=16% Similarity=0.576 Sum_probs=16.4
Q ss_pred ccccccccCCCCCCcccccC
Q 023534 215 QENLGIYPDPSGDPTKVSSD 234 (281)
Q Consensus 215 ~e~~~iy~dp~~DP~kffq~ 234 (281)
++..++|.||+ ||.+.+=.
T Consensus 95 G~~V~V~Y~P~-~P~~~~l~ 113 (148)
T PF12158_consen 95 GDTVTVYYNPN-NPEEARLE 113 (148)
T ss_pred cCEEEEEECCc-CCCeEEEe
Confidence 46789999999 99998766
No 23
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=40.62 E-value=14 Score=37.83 Aligned_cols=84 Identities=12% Similarity=0.008 Sum_probs=61.6
Q ss_pred ccccccccceEeeCCcccccchHHHHhhHHHHh-----hcCCCeEEEEEEEEecCcEEEEEEEEeeecCccccccCCceE
Q 023534 74 RALGTFAVSVKYKDPTRSFTGREKYKRRLWATT-----ALDNPSVTVQEMVMLSTSVLSIKWTLRGKPKSIIANIGGDLI 148 (281)
Q Consensus 74 rt~sIYApDV~FkDPfn~F~GrerYkr~~~M~~-----~L~nPrf~V~ei~~~s~~~i~irWrL~g~~klpwa~~ggrl~ 148 (281)
--..+|+-+|-|+++-+.++|+.-|+.+.-..+ +..|+-..|.-++.- -+...++|.-||. +.+|.. .| .
T Consensus 90 s~vn~isq~V~ihkekvArreIg~lttnk~~~r~hkiIap~nl~~~iryvrkP-id~~mLd~igHGI-r~~~~~-rg--~ 164 (483)
T KOG2546|consen 90 SQVNHISQTVDIHKEKVARREIGNLTTNKGLSRQHKIIAPANLEVPIRYVRKP-IDYSMLDDIGHGI-RGSWET-RG--R 164 (483)
T ss_pred hhhhhhhhhheecchhhhhhhccceeeccccccccceeccccCCCCccceecc-ccceeeecccccc-cccccc-cc--C
Confidence 456789999999999999999999998832222 235666666666544 6789999999997 667763 22 2
Q ss_pred EEEEeEEEEeCCCCc
Q 023534 149 VKVYSKFTLNQISGQ 163 (281)
Q Consensus 149 I~G~Sel~LN~isGr 163 (281)
-.|+++..|+- +|.
T Consensus 165 ~~g~~t~~l~r-s~p 178 (483)
T KOG2546|consen 165 FDGTSTGKLSR-SGP 178 (483)
T ss_pred cCcccccccCC-CCC
Confidence 56788888887 653
No 24
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=31.03 E-value=38 Score=30.85 Aligned_cols=30 Identities=30% Similarity=0.514 Sum_probs=19.3
Q ss_pred EEEEeeeccCCC-CcHHHHHHHhhhhHHHHh
Q 023534 164 VIEHEELWDLSA-SSPVARAFFWASRRLYAT 193 (281)
Q Consensus 164 VvsH~DyWD~S~-~dv~aQ~f~~~sR~~~a~ 193 (281)
...|+||||-=+ -|+.++.-|..--++|+.
T Consensus 32 LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~ 62 (202)
T PF06764_consen 32 LAFHVDYWDYLGWKDPFASPEFTQRQRAYAR 62 (202)
T ss_dssp EEEE-STT-SSSS--TT--HHHHHHHHHHHH
T ss_pred EEecCCcccCCCCCCccCChhHHHHHHHHHH
Confidence 357999999865 689999988877788875
No 25
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=25.93 E-value=15 Score=27.57 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=22.4
Q ss_pred ccccCCcceecCChhHHHHHHHHHH
Q 023534 40 FGELCNEFECISSPLVESTARQLVR 64 (281)
Q Consensus 40 f~~~Cd~F~c~ssP~VE~t~r~L~~ 64 (281)
..|+|+.|-+.|+++|..-++.|++
T Consensus 28 ~rEIa~~~g~~S~~tv~~~L~~Le~ 52 (65)
T PF01726_consen 28 VREIAEALGLKSTSTVQRHLKALER 52 (65)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHH
Confidence 5799999999999999999998875
No 26
>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Probab=23.91 E-value=3.3e+02 Score=25.09 Aligned_cols=71 Identities=18% Similarity=0.177 Sum_probs=47.3
Q ss_pred hcCCCccccCCcceecCChhHHHHHHHHHHHHH---------------------HH-hhCC--ccccccccceEee-C--
Q 023534 35 VDGMDFGELCNEFECISSPLVESTARQLVRDIL---------------------EL-REGN--RALGTFAVSVKYK-D-- 87 (281)
Q Consensus 35 v~~~~f~~~Cd~F~c~ssP~VE~t~r~L~~Di~---------------------~~-rtgn--rt~sIYApDV~Fk-D-- 87 (281)
++|+++.|++..+- +|..+|.+.+....+=+. ++ +.|+ .+.++.++||.|. |
T Consensus 122 ~~g~s~~EIA~~lg-~s~~tVr~~l~RAr~~Lr~~~~~~~~~~~~~~~~~~~f~~a~~~gD~~~l~~lL~~dv~~~~dgg 200 (281)
T TIGR02957 122 VFDYPYEEIASIVG-KSEANCRQLVSRARRHLDARRPRFEVSREESRQLLERFVEAAQTGDLDGLLELLAEDVVLYGDGG 200 (281)
T ss_pred HcCCCHHHHHHHHC-CCHHHHHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHhhceEEEecCC
Confidence 79999999999887 455566655443333322 22 2455 4778999999998 3
Q ss_pred ---C-c-ccccchHHHHhh-HHHHh
Q 023534 88 ---P-T-RSFTGREKYKRR-LWATT 106 (281)
Q Consensus 88 ---P-f-n~F~GrerYkr~-~~M~~ 106 (281)
| . +-++|+++..+. ..+..
T Consensus 201 g~~~~~~~p~~G~~~v~~~~~~~~~ 225 (281)
T TIGR02957 201 GKVRAALRPIYGADRVARFFFGLVR 225 (281)
T ss_pred CcCCCCCcccccHHHHHHHHHHHhc
Confidence 2 2 338999998887 44443
No 27
>PRK14663 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=22.72 E-value=54 Score=26.77 Aligned_cols=59 Identities=29% Similarity=0.429 Sum_probs=34.3
Q ss_pred HHhhhhccchHHHHHhhhhccccc--ccccccccCCCCCCcccccCCCCcccchHHHHHHHHHHHHHHHHHhhcccchhH
Q 023534 191 YATTEAGKDSFDLINNLKSKISTE--QENLGIYPDPSGDPTKVSSDSRCFCFCFCLTSNVIYIAFASVITLSITHSKHYE 268 (281)
Q Consensus 191 ~a~~e~~kd~~~~~~~~~~~~~~~--~e~~~iy~dp~~DP~kffq~~d~~~~d~~~~~~v~~~~~~~v~~l~~~~~~~~~ 268 (281)
|||+||.-.+ +...++.+ =.+.+|++||+|-|.--+....... -.....++|||.+.|-
T Consensus 47 fAaKEA~~KA------lg~g~~~~i~~~dieI~~~~~G~P~i~l~g~~~~~-------------~~~~i~vSiSH~~~~a 107 (116)
T PRK14663 47 FAAKEAVVKA------LGTGFSQGVHWKSFAILNDAAGRPFVKVIDDGCLP-------------PGCVIKISISHDRHSA 107 (116)
T ss_pred HHHHHHHHHH------HccCCCCCceeeEEEEEECCCCCcEEEEchhHhhc-------------CCCEEEEEEEcCCCeE
Confidence 8888875432 22222222 2456899999999987665431000 0122467889988774
No 28
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=22.50 E-value=3.1e+02 Score=20.73 Aligned_cols=40 Identities=15% Similarity=0.351 Sum_probs=28.4
Q ss_pred EEEEEEEEecCcEEEEEEEEeeecCccccccCCceEEEEEeEEEEeCCCCcEEEE
Q 023534 113 VTVQEMVMLSTSVLSIKWTLRGKPKSIIANIGGDLIVKVYSKFTLNQISGQVIEH 167 (281)
Q Consensus 113 f~V~ei~~~s~~~i~irWrL~g~~klpwa~~ggrl~I~G~Sel~LN~isGrVvsH 167 (281)
+.|+++...++.. |++.+..+ .|+ .-++.+|+.+|.|+..
T Consensus 43 ~~v~~ve~~~~g~----yev~~~~~------dG~-----~~ev~vD~~tG~V~~~ 82 (83)
T PF13670_consen 43 YQVREVEFDDDGC----YEVEARDK------DGK-----KVEVYVDPATGEVVKE 82 (83)
T ss_pred CceEEEEEcCCCE----EEEEEEEC------CCC-----EEEEEEcCCCCeEeec
Confidence 3888876533434 88887655 243 5789999999999864
No 29
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=20.76 E-value=99 Score=23.77 Aligned_cols=20 Identities=10% Similarity=-0.129 Sum_probs=17.1
Q ss_pred cchHHHHHHHHHHHHHHHHH
Q 023534 240 FCFCLTSNVIYIAFASVITL 259 (281)
Q Consensus 240 ~d~~~~~~v~~~~~~~v~~l 259 (281)
.|++|+..+.|+||+-.-++
T Consensus 4 ~DiiQii~l~AlI~~pLGyl 23 (62)
T PF11120_consen 4 SDIIQIIILCALIFFPLGYL 23 (62)
T ss_pred HHHHHHHHHHHHHHHhHHHH
Confidence 58999999999999877665
No 30
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=20.57 E-value=78 Score=30.99 Aligned_cols=50 Identities=26% Similarity=0.383 Sum_probs=35.4
Q ss_pred CChhHHHHHHHHHHHHHHHh--hCCcccc------------------ccccceEeeCCcccccchHHHHhh
Q 023534 51 SSPLVESTARQLVRDILELR--EGNRALG------------------TFAVSVKYKDPTRSFTGREKYKRR 101 (281)
Q Consensus 51 ssP~VE~t~r~L~~Di~~~r--tgnrt~s------------------IYApDV~FkDPfn~F~GrerYkr~ 101 (281)
+=|+|++. ++|+.|++++. .+.-+++ .|-=|-...||-.+|-|+|.|--.
T Consensus 41 ~fPaV~~l-~~LAa~VR~ilG~~~kitYAADWsEY~~~~p~dg~gd~~f~LDpLWa~~~IDfIGID~Y~PL 110 (299)
T PF13547_consen 41 SFPAVEAL-RALAADVRAILGPGTKITYAADWSEYFGYQPADGSGDVYFHLDPLWADPNIDFIGIDNYFPL 110 (299)
T ss_pred CCcHHHHH-HHHHHHHHHHhCCCceEEEeccCHHhcCcCCCCCCCcccccCcccccCCcCCEEEeeccccc
Confidence 55999874 88999999887 3333322 222234668889999999999766
No 31
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=20.28 E-value=78 Score=26.76 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=19.1
Q ss_pred ceecCChhHHHHHHHHHHHHHHHh
Q 023534 47 FECISSPLVESTARQLVRDILELR 70 (281)
Q Consensus 47 F~c~ssP~VE~t~r~L~~Di~~~r 70 (281)
..|..||+.|-.++|| +++++.+
T Consensus 101 ~~c~ns~Y~e~~~~~i-~Ei~~~y 123 (132)
T PF14871_consen 101 TCCLNSPYREFLLEQI-REILDRY 123 (132)
T ss_pred ecCCCccHHHHHHHHH-HHHHHcC
Confidence 4799999999888888 8898655
No 32
>PLN02940 riboflavin kinase
Probab=20.10 E-value=83 Score=30.65 Aligned_cols=37 Identities=11% Similarity=0.023 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHHHHh--hCCccccccccceEeeCCc
Q 023534 53 PLVESTARQLVRDILELR--EGNRALGTFAVSVKYKDPT 89 (281)
Q Consensus 53 P~VE~t~r~L~~Di~~~r--tgnrt~sIYApDV~FkDPf 89 (281)
+++|+..+||.+|+..++ -...-+.-|..+.+|.+|.
T Consensus 343 ~~~~~L~~qi~~D~~~a~~~~~~~~~~~~~~~~~~~~~~ 381 (382)
T PLN02940 343 PSLESLIAKIHEDRRIAEKALDLPLYAKYKDDPYLTNSL 381 (382)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCchhhhhccChhhccCC
Confidence 689999999999999998 3334566777777777763
Done!