BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023537
(281 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GCU|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At1g53580
pdb|2GCU|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At1g53580
pdb|2GCU|C Chain C, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At1g53580
pdb|2GCU|D Chain D, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At1g53580
Length = 245
Score = 349 bits (895), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 170/219 (77%), Positives = 187/219 (85%), Gaps = 1/219 (0%)
Query: 60 KLLFRQTFEKESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTH 119
KLLFRQ FE ESST+TYLLADV+HPDKPALLIDPVDKTVDRDL +I ELGLKL+YAMNTH
Sbjct: 2 KLLFRQLFENESSTFTYLLADVSHPDKPALLIDPVDKTVDRDLKLIDELGLKLIYAMNTH 61
Query: 120 VHADHVTGTGLIKSKVPGVXXXXXXXXXXXXDLHVEHGDKVSFGDLFLEVRATPGHTLGC 179
VHADHVTGTGL+K+K+PGV DL +E GDKVS GD++LEVRATPGHT GC
Sbjct: 62 VHADHVTGTGLLKTKLPGVKSVISKASGSKADLFLEPGDKVSIGDIYLEVRATPGHTAGC 121
Query: 180 VTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQGGSSSQLYKSVHSQIFTLPKDTLIYP 239
VTYV+GEG DQPQPRMAFTGDA+LIRGCGRTDFQ GSS QLY+SVHSQIFTLPKDTLIYP
Sbjct: 122 VTYVTGEGADQPQPRMAFTGDAVLIRGCGRTDFQEGSSDQLYESVHSQIFTLPKDTLIYP 181
Query: 240 AHDYKGFTVSTVGEEIQYNPRLTKD-EVLVWLMLNSFIS 277
AHDYKGF VSTVGEE+Q+NPRLTKD E +M N +S
Sbjct: 182 AHDYKGFEVSTVGEEMQHNPRLTKDKETFKTIMSNLNLS 220
>pdb|4EFZ|A Chain A, Crystal Structure Of A Hypothetical Metallo-Beta-Lactamase
From Burkholderia Pseudomallei
pdb|4EFZ|B Chain B, Crystal Structure Of A Hypothetical Metallo-Beta-Lactamase
From Burkholderia Pseudomallei
Length = 298
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 102/231 (44%), Gaps = 42/231 (18%)
Query: 67 FEKESSTYTYLLADVNHPDKPALLIDPV-----------DKTVDRDLNVIKELGLKLVYA 115
F+ + T +YLL D + LID V + D+ + + LG ++ +
Sbjct: 11 FDPATCTISYLLFDSGSGE--CALIDSVLDYDPKSGRTRTASADQLIARVAALGARVRWL 68
Query: 116 MNTHVHADHVTGTGLIKSKVPGVXXXXXXXXX-------------------XXXDLHVEH 156
+ THVHADH++ +K++V G D ++
Sbjct: 69 LETHVHADHLSAAPYLKTRVGGEIAIGRHVTRVQDVFGKLFNAGPAFAHDGSQFDRLLDD 128
Query: 157 GDKVSFGDLFLEVRATPGHTLGCVTYVSGE--GPDQPQPRMAFTGDALLI--RGCGRTDF 212
GD ++ G L + TPGHT C+TYV E + AF GD L + G R DF
Sbjct: 129 GDTLALGALSIRAMHTPGHTPACMTYVVTEAHAAHDARDAAAFVGDTLFMPDYGTARCDF 188
Query: 213 QGGSSSQLYKSVHSQIFTLPKDTLIYPAHDYK--GFTV---STVGEEIQYN 258
GG + LY+S+ ++ +LP T +Y HDY+ G + STV +E++ N
Sbjct: 189 PGGDARSLYRSIR-KVLSLPPATRLYMCHDYQPNGRAIQYASTVADELREN 238
>pdb|1QH3|A Chain A, Human Glyoxalase Ii With Cacodylate And Acetate Ions
Present In The Active Site
pdb|1QH3|B Chain B, Human Glyoxalase Ii With Cacodylate And Acetate Ions
Present In The Active Site
pdb|1QH5|A Chain A, Human Glyoxalase Ii With
S-(N-Hydroxy-N-Bromophenylcarbamoyl) Glutathione
pdb|1QH5|B Chain B, Human Glyoxalase Ii With
S-(N-Hydroxy-N-Bromophenylcarbamoyl) Glutathione
Length = 260
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 80/173 (46%), Gaps = 7/173 (4%)
Query: 71 SSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGL 130
+ Y YL+ D K A ++DPV + ++ ++ G+KL + TH H DH G
Sbjct: 10 TDNYMYLVID--DETKEAAIVDPVQP--QKVVDAARKHGVKLTTVLTTHHHWDHAGGNEK 65
Query: 131 IKSKVPGVXXXXXXXXXXXXDLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQ 190
+ G+ + H + G L ++ ATP HT G + Y + P
Sbjct: 66 LVKLESGLKVYGGDDRIGALTHKITHLSTLQVGSLNVKCLATPCHTSGHICYFVSK-PGG 124
Query: 191 PQPRMAFTGDALLIRGCGRTDFQGGSSSQLYKSVHSQIFTLPKDTLIYPAHDY 243
+P FTGD L + GCG+ F G++ ++ K++ + LP DT +Y H+Y
Sbjct: 125 SEPPAVFTGDTLFVAGCGK--FYEGTADEMCKALLEVLGRLPPDTRVYCGHEY 175
>pdb|3R2U|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|C Chain C, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|D Chain D, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
Length = 466
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 105/236 (44%), Gaps = 30/236 (12%)
Query: 61 LLFRQTFEKESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHV 120
+ F+Q ++K S +YL+ A++IDP+ + + + V E GL + +A TH+
Sbjct: 25 MFFKQFYDKHLSQASYLIG--CQKTGEAMIIDPI-RDLSSYIRVADEEGLTITHAAETHI 81
Query: 121 HADHVTGTGLIKSK------VPGVXXXXXXXXXXXXDLH-VEHGDKVSFGDLFLEVRATP 173
HAD +G + K V G H V+H D + G++ L+V TP
Sbjct: 82 HADFASGIRDVAIKLNANIYVSGESDDTLGYKNMPNHTHFVQHNDDIYVGNIKLKVLHTP 141
Query: 174 GHTLGCVTY-VSGEGPDQPQPRMAFTGDALLIRGCGRTDF-------QGGS---SSQLYK 222
GHT +++ ++ EG P F+GD + + GR D +G S + Q++K
Sbjct: 142 GHTPESISFLLTDEGAGAQVPMGLFSGDFIFVGDIGRPDLLEKAVKVEGSSEIGAKQMFK 201
Query: 223 SVHSQIFTLPKDTLIYPAH--------DYKGFTVSTVGEEIQYNPRLTKDEVLVWL 270
S+ S I LP I+P H ST+G E Q N +++ ++
Sbjct: 202 SIES-IKDLPDYIQIWPGHGAGSPCGKSLGAIPTSTLGYEKQTNWAFSENNEATFI 256
>pdb|1XM8|A Chain A, X-Ray Structure Of Glyoxalase Ii From Arabidopsis Thaliana
Gene At2g31350
pdb|1XM8|B Chain B, X-Ray Structure Of Glyoxalase Ii From Arabidopsis Thaliana
Gene At2g31350
pdb|2Q42|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Glyoxalase Ii From Arabidopsis Thaliana Gene At2g31350
pdb|2Q42|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Glyoxalase Ii From Arabidopsis Thaliana Gene At2g31350
Length = 254
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 84/185 (45%), Gaps = 39/185 (21%)
Query: 73 TYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADH-------- 124
Y Y+L D + ++DP + + ++ +K G L Y +NTH H DH
Sbjct: 12 NYAYILHDED--TGTVGVVDPSE--AEPIIDSLKRSGRNLTYILNTHHHYDHTGGNLELK 67
Query: 125 ------VTGTGLIKSKVPGVXXXXXXXXXXXXDLHVEHGDKVSFGDLFLEVRATPGHTLG 178
V G+ + K ++PG+ D+ ++ GDK F + V TPGHT G
Sbjct: 68 DRYGAKVIGSAMDKDRIPGI------------DMALKDGDKWMFAGHEVHVMDTPGHTKG 115
Query: 179 CVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQGGSSSQLYKSVHSQIFTLPKDTLIY 238
++ P R FTGD + CG+ F+ G+ Q+ S+ +I +LP DT IY
Sbjct: 116 HISLYF------PGSRAIFTGDTMFSLSCGKL-FE-GTPKQMLASLQ-KITSLPDDTSIY 166
Query: 239 PAHDY 243
H+Y
Sbjct: 167 CGHEY 171
>pdb|3TP9|A Chain A, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
pdb|3TP9|B Chain B, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
Length = 474
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 19/172 (11%)
Query: 88 ALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVXXXXXXXXX 147
A +IDP + V+ L K GL++V A+ TH+HAD V+G +
Sbjct: 29 ACVIDPA-RDVEPYLLTAKREGLRIVAALETHIHADFVSGAREXADRAGAAICVSDEGPP 87
Query: 148 XXXDLHVEH--------GDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQ-PRMAFT 198
+V+ GD++ FG++ + V TPGHT V+Y+ +G P P F+
Sbjct: 88 EWKSEYVKAYPHRLLKDGDELHFGNVRIVVXHTPGHTPEHVSYLLYDGKTSPDVPXALFS 147
Query: 199 GDALLIRGCGRTDF------QGGSSSQLYKSVHSQIF---TLPKDTLIYPAH 241
GD + + GR D + GSS L + + LP + PAH
Sbjct: 148 GDFVFVGDVGRPDLLERVAGESGSSEALARQXFRSLRKFEALPDHVQVLPAH 199
>pdb|2XF4|A Chain A, Crystal Structure Of Salmonella Enterica Serovar
Typhimurium Ycbl
Length = 210
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 10/111 (9%)
Query: 151 DLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRT 210
D + GD+VS G++ L+V PGHT G V + Q ++ +GD + G GR+
Sbjct: 108 DRWLNDGDRVSVGNVTLQVLHCPGHTPGHVVFFD------EQSQLLISGDVIFKGGVGRS 161
Query: 211 DFQGGSSSQLYKSVHSQIFTLPKDTLIYPAHDYKGFTVSTVGEEIQYNPRL 261
DF G +QL ++ ++ L D P H +ST+G E +NP L
Sbjct: 162 DFPRGDHTQLIDAIKRKLLPLGDDVTFIPGHG----PLSTLGYERLHNPFL 208
>pdb|2P18|A Chain A, Crystal Structure Of The Leishmania Infantum Glyoxalase Ii
pdb|2P1E|A Chain A, Crystal Structure Of The Leishmania Infantum Glyoxalase Ii
With D- Lactate At The Active Site
Length = 311
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 82/193 (42%), Gaps = 21/193 (10%)
Query: 69 KESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGT 128
+ +T+T DVN KP L +++ + + N ++ ++TH H DH G
Sbjct: 46 NDHTTHTLAAVDVNADYKPILTY--IEEHLKQQGNA--DVTYTFSTILSTHKHWDHSGGN 101
Query: 129 GLIK-------SKVPGVXXXXXXXXXXXXDLHVEHGDKVSFGDLFLEVRATPGHTLGCVT 181
+K S VP V V GD+V GDL +EV P HT G V
Sbjct: 102 AKLKAELEAMNSTVPVVVVGGANDSIPAVTKPVREGDRVQVGDLSVEVIDAPCHTRGHVL 161
Query: 182 YVSGEGPDQPQPRMA-FTGDALLIRGCGRTDFQGG------SSSQLYKSVHSQIFTLPKD 234
Y + P P +A FTGD + I G G F+G + ++Y + L K
Sbjct: 162 Y-KVQHPQHPNDGVALFTGDTMFIAGIGAF-FEGDEKDMCRAMEKVYHIHKGNDYALDKV 219
Query: 235 TLIYPAHDY-KGF 246
T I+P H+Y GF
Sbjct: 220 TFIFPGHEYTSGF 232
>pdb|2QED|A Chain A, Crystal Structure Of Salmonella Thyphimurium Lt2
Glyoxalase Ii
Length = 258
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 46/73 (63%), Gaps = 11/73 (15%)
Query: 171 ATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQGGSSSQLYKSVHSQIFT 230
ATPGHTLG V Y S +P + F GD L GCGR F+ G+ SQ+Y+S+ +I +
Sbjct: 113 ATPGHTLGHVCYFS-------RPYL-FCGDTLFSGGCGRL-FE-GTPSQMYQSL-MKINS 161
Query: 231 LPKDTLIYPAHDY 243
LP DTLI AH+Y
Sbjct: 162 LPDDTLICCAHEY 174
>pdb|2GMN|A Chain A, Crystal Structure Of Bjp-1, A Subclass B3
Metallo-beta-lactamase Of Bradyrhizobium Japonicum
pdb|2GMN|B Chain B, Crystal Structure Of Bjp-1, A Subclass B3
Metallo-beta-lactamase Of Bradyrhizobium Japonicum
Length = 274
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 62/160 (38%), Gaps = 27/160 (16%)
Query: 105 IKELGLKLV---YAMNTHVHADHVTGTGLIKSKV-------------------PGVXXXX 142
I +LG K+ +NTH H DH G IK + PG
Sbjct: 64 IAKLGFKVADIKLILNTHAHLDHTGGFAEIKKETGAQLVAGERDKPLLEGGYYPGDEKNE 123
Query: 143 XXXX-XXXXDLHVEHGDKVSFGDLFLEVRATPGHTLGCVTY--VSGEGPDQPQPRMAFTG 199
D V+ GD+V+ GD L ATPGH+ GC ++ +G + + +G
Sbjct: 124 DLAFPAVKVDRAVKEGDRVTLGDTTLTAHATPGHSPGCTSWEMTVKDGKEDREVLFFCSG 183
Query: 200 DALLIRGCGRTDFQGGSSSQLYKSVHSQIFTLPKDTLIYP 239
L R G+ + G Y++ ++ + D L+ P
Sbjct: 184 TVALNRLVGQPTYAGIVDD--YRATFAKAKAMKIDVLLGP 221
>pdb|3LVZ|A Chain A, New Refinement Of The Crystal Structure Of Bjp-1, A
Subclass B3 Metallo-Beta-Lactamase Of Bradyrhizobium
Japonicum
pdb|3LVZ|B Chain B, New Refinement Of The Crystal Structure Of Bjp-1, A
Subclass B3 Metallo-Beta-Lactamase Of Bradyrhizobium
Japonicum
pdb|3M8T|A Chain A, Crystal Structure Of The Complex Between Class B3
Beta-Lactamase Bjp-1 And 4-Nitrobenzene-Sulfonamide
pdb|3M8T|B Chain B, Crystal Structure Of The Complex Between Class B3
Beta-Lactamase Bjp-1 And 4-Nitrobenzene-Sulfonamide
Length = 294
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 62/160 (38%), Gaps = 27/160 (16%)
Query: 105 IKELGLKLV---YAMNTHVHADHVTGTGLIKSKV-------------------PGVXXXX 142
I +LG K+ +NTH H DH G IK + PG
Sbjct: 84 IAKLGFKVADIKLILNTHAHLDHTGGFAEIKKETGAQLVAGERDKPLLEGGYYPGDEKNE 143
Query: 143 XXXX-XXXXDLHVEHGDKVSFGDLFLEVRATPGHTLGCVTY--VSGEGPDQPQPRMAFTG 199
D V+ GD+V+ GD L ATPGH+ GC ++ +G + + +G
Sbjct: 144 DLAFPAVKVDRAVKEGDRVTLGDTTLTAHATPGHSPGCTSWEMTVKDGKEDREVLFFCSG 203
Query: 200 DALLIRGCGRTDFQGGSSSQLYKSVHSQIFTLPKDTLIYP 239
L R G+ + G Y++ ++ + D L+ P
Sbjct: 204 TVALNRLVGQPTYAGIVDD--YRATFAKAKAMKIDVLLGP 241
>pdb|1L9Y|A Chain A, Fez-1-Y228a, A Mutant Of The Metallo-Beta-Lactamase From
Legionella Gormanii
pdb|1L9Y|B Chain B, Fez-1-Y228a, A Mutant Of The Metallo-Beta-Lactamase From
Legionella Gormanii
Length = 263
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 35/103 (33%), Gaps = 25/103 (24%)
Query: 105 IKELGLKLV---YAMNTHVHADHVTGTGLIKSKVPG----------------------VX 139
IK+LG K + +H H DH G+ LIK +
Sbjct: 54 IKKLGFKFSDTKILLISHAHFDHAAGSELIKQQTKAKYMVMDEDVSVILSGGKSDFHYAN 113
Query: 140 XXXXXXXXXXXDLHVEHGDKVSFGDLFLEVRATPGHTLGCVTY 182
D + G++V G L TPGHT GC T+
Sbjct: 114 DSSTYFTQSTVDKVLHDGERVELGGTVLTAHLTPGHTRGCTTW 156
>pdb|1JT1|A Chain A, Fez-1 Metallo-Beta-Lactamase From Legionella Gormanii
Modelled With D- Captopril
pdb|1K07|A Chain A, Native Fez-1 Metallo-beta-lactamase From Legionella
Gormanii
pdb|1K07|B Chain B, Native Fez-1 Metallo-beta-lactamase From Legionella
Gormanii
Length = 263
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 35/103 (33%), Gaps = 25/103 (24%)
Query: 105 IKELGLKLV---YAMNTHVHADHVTGTGLIKSKVPG----------------------VX 139
IK+LG K + +H H DH G+ LIK +
Sbjct: 54 IKKLGFKFSDTKILLISHAHFDHAAGSELIKQQTKAKYMVMDEDVSVILSGGKSDFHYAN 113
Query: 140 XXXXXXXXXXXDLHVEHGDKVSFGDLFLEVRATPGHTLGCVTY 182
D + G++V G L TPGHT GC T+
Sbjct: 114 DSSTYFTQSTVDKVLHDGERVELGGTVLTAHLTPGHTRGCTTW 156
>pdb|3VPE|A Chain A, Crystal Structure Of Metallo-beta-lactamase Smb-1
pdb|3VQZ|A Chain A, Crystal Structure Of Metallo-beta-lactamase, Smb-1, In A
Complex With Mercaptoacetic Acid
Length = 262
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 31/119 (26%)
Query: 94 VDKTVDRDLNV----IKELGLKLV---YAMNTHVHADHVTGTGLIKSKVPGVXXXXXXXX 146
VD T ++ V I+ +G KL Y ++TH H DH G ++ K+ G
Sbjct: 40 VDGTTEKGAQVVAANIRAMGFKLSDVKYILSTHSHEDHAGGISAMQ-KLTGATVLAGAAN 98
Query: 147 XXXXDL-----------------------HVEHGDKVSFGDLFLEVRATPGHTLGCVTY 182
V G+ V G L ++ ATPGHT G +T+
Sbjct: 99 VDTLRTGVSPKSDPQFGSLSNFPGSAKVRAVADGELVKLGPLAVKAHATPGHTEGGITW 157
>pdb|2A7M|A Chain A, 1.6 Angstrom Resolution Structure Of The Quorum-Quenching
N-Acyl Homoserine Lactone Hydrolase Of Bacillus
Thuringiensis
Length = 250
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Query: 99 DRDLNVIKELGLK---LVYAMNTHVHADHVTGTG 129
DR +N++K +G + L+Y +++H+H DH G G
Sbjct: 81 DRIVNILKRVGYEPDDLLYIISSHLHFDHAGGNG 114
>pdb|3DHA|A Chain A, An Ultral High Resolution Structure Of N-Acyl Homoserine
Lactone Hydrolase With The Product
N-Hexanoyl-L-Homoserine Bound At An Alternative Site
pdb|3DHB|A Chain A, 1.4 Angstrom Structure Of N-Acyl Homoserine Lactone
Hydrolase With The Product N-Hexanoyl-L-Homoserine Bound
At The Catalytic Metal Center
pdb|3DHC|A Chain A, 1.3 Angstrom Structure Of N-Acyl Homoserine Lactone
Hydrolase With The Product N-Hexanoyl-L-Homocysteine
Bound To The Catalytic Metal Center
Length = 254
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Query: 99 DRDLNVIKELGLK---LVYAMNTHVHADHVTGTG 129
DR +N++K +G + L+Y +++H+H DH G G
Sbjct: 85 DRIVNILKRVGYEPDDLLYIISSHLHFDHAGGNG 118
>pdb|2BR6|A Chain A, Crystal Structure Of Quorum-Quenching N-Acyl Homoserine
Lactone Lactonase
pdb|2BTN|A Chain A, Crystal Structure And Catalytic Mechanism Of The Quorum-
Quenching N-Acyl Homoserine Lactone Hydrolase
Length = 252
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Query: 99 DRDLNVIKELGLK---LVYAMNTHVHADHVTGTG 129
DR +N++K +G + L+Y +++H+H DH G G
Sbjct: 83 DRIVNILKRVGYEPDDLLYIISSHLHFDHAGGNG 116
>pdb|2FUG|7 Chain 7, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|H Chain H, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|Q Chain Q, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|Z Chain Z, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|3I9V|7 Chain 7, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3I9V|H Chain H, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3IAM|7 Chain 7, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAM|H Chain H, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAS|7 Chain 7, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|H Chain H, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|Q Chain Q, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|Z Chain Z, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3M9S|7 Chain 7, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|3M9S|J Chain J, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|2YBB|7 Chain 7, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|4HEA|7 Chain 7, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|I Chain I, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 129
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 105 IKELGLKLVYAMNTHVHADHVTGTGLIKSKVP 136
+K +GL+L A + H+HA + G GL+ K+P
Sbjct: 79 LKRIGLRLPRA-HIHLHAHYEPGKGLVTGKIP 109
>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of
The Saccharomyces Cerevisiae Ampk Homolog Snf1
Length = 271
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 183 VSGEGPDQPQPRMAFTGDALLIRGCGRTDFQGGSSSQLYKSVHSQIFTLPK 233
+SG+ P+ + G L + C R F S L+K++ + ++TLPK
Sbjct: 174 ISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYTLPK 224
>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast
Snf1
Length = 274
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 183 VSGEGPDQPQPRMAFTGDALLIRGCGRTDFQGGSSSQLYKSVHSQIFTLPK 233
+SG+ P+ + G L + C R F S L+K++ + ++TLPK
Sbjct: 178 ISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYTLPK 228
>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain
pdb|3DAE|B Chain B, Crystal Structure Of Phosphorylated Snf1 Kinase Domain
Length = 283
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 183 VSGEGPDQPQPRMAFTGDALLIRGCGRTDFQGGSSSQLYKSVHSQIFTLPK 233
+SG+ P+ + G L + C R F S L+K++ + ++TLPK
Sbjct: 184 ISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYTLPK 234
>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast
Amp-Activated Protein Kinase Snf1
pdb|3HYH|B Chain B, Crystal Structure Of The Protein Kinase Domain Of Yeast
Amp-Activated Protein Kinase Snf1
Length = 275
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 183 VSGEGPDQPQPRMAFTGDALLIRGCGRTDFQGGSSSQLYKSVHSQIFTLPK 233
+SG+ P+ + G L + C R F S L+K++ + ++TLPK
Sbjct: 183 ISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYTLPK 233
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,449,463
Number of Sequences: 62578
Number of extensions: 283109
Number of successful extensions: 594
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 549
Number of HSP's gapped (non-prelim): 40
length of query: 281
length of database: 14,973,337
effective HSP length: 98
effective length of query: 183
effective length of database: 8,840,693
effective search space: 1617846819
effective search space used: 1617846819
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)