Query 023537
Match_columns 281
No_of_seqs 264 out of 1850
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 04:48:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023537.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023537hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02962 hydroxyacylglutathion 100.0 7.5E-43 1.6E-47 304.2 28.7 226 54-279 4-230 (251)
2 KOG0814 Glyoxylase [General fu 100.0 1.2E-40 2.5E-45 265.5 13.1 213 60-280 8-221 (237)
3 PLN02469 hydroxyacylglutathion 100.0 1.4E-36 3E-41 266.5 24.4 187 71-265 10-230 (258)
4 PLN02398 hydroxyacylglutathion 100.0 6.8E-35 1.5E-39 262.0 25.3 182 69-264 83-299 (329)
5 TIGR03413 GSH_gloB hydroxyacyl 100.0 9.9E-34 2.1E-38 247.6 23.8 183 69-266 6-221 (248)
6 PRK10241 hydroxyacylglutathion 100.0 2.7E-33 5.9E-38 245.2 22.6 181 69-265 8-221 (251)
7 KOG0813 Glyoxylase [General fu 100.0 4.5E-31 9.7E-36 227.2 19.6 192 67-268 7-237 (265)
8 PRK11921 metallo-beta-lactamas 99.9 2E-22 4.4E-27 187.4 19.9 163 68-243 28-225 (394)
9 COG0491 GloB Zn-dependent hydr 99.9 7.1E-22 1.5E-26 170.9 19.1 164 70-243 22-212 (252)
10 PRK05452 anaerobic nitric oxid 99.9 4.2E-21 9.1E-26 182.1 18.8 163 68-243 30-229 (479)
11 smart00849 Lactamase_B Metallo 99.9 5.7E-20 1.2E-24 151.8 18.9 159 70-241 3-183 (183)
12 PF00753 Lactamase_B: Metallo- 99.8 1.8E-20 3.8E-25 154.9 10.6 161 69-241 2-194 (194)
13 COG0426 FpaA Uncharacterized f 99.8 6.3E-18 1.4E-22 153.2 18.0 163 68-243 31-224 (388)
14 PF14597 Lactamase_B_5: Metall 99.7 1.3E-16 2.9E-21 128.9 14.1 152 71-243 21-182 (199)
15 PRK11539 ComEC family competen 99.7 1.8E-16 4E-21 158.3 17.2 186 66-277 505-712 (755)
16 TIGR00649 MG423 conserved hypo 99.7 8E-16 1.7E-20 144.5 14.8 128 70-205 11-163 (422)
17 TIGR00361 ComEC_Rec2 DNA inter 99.7 1.9E-15 4E-20 149.3 17.5 186 69-277 446-654 (662)
18 COG2333 ComEC Predicted hydrol 99.6 7.6E-14 1.6E-18 123.7 16.2 185 69-276 50-261 (293)
19 PRK11244 phnP carbon-phosphoru 99.5 6.4E-13 1.4E-17 116.4 11.7 120 70-203 34-165 (250)
20 PRK00685 metal-dependent hydro 99.4 1.4E-12 3.1E-17 112.3 12.2 122 72-205 7-147 (228)
21 TIGR03675 arCOG00543 arCOG0054 99.4 3.6E-13 7.8E-18 131.5 7.7 129 69-204 184-350 (630)
22 TIGR03307 PhnP phosphonate met 99.4 2.9E-12 6.2E-17 111.4 12.2 119 71-203 25-155 (238)
23 COG0595 mRNA degradation ribon 99.4 7.4E-12 1.6E-16 119.7 15.3 130 69-206 18-172 (555)
24 COG1237 Metal-dependent hydrol 99.3 4.8E-11 1E-15 102.4 15.6 71 71-146 20-94 (259)
25 PRK04286 hypothetical protein; 99.3 1.5E-11 3.3E-16 110.4 12.0 125 70-202 12-187 (298)
26 TIGR02649 true_RNase_BN ribonu 99.3 5.5E-11 1.2E-15 107.1 13.5 113 69-186 13-150 (303)
27 TIGR02651 RNase_Z ribonuclease 99.3 4E-11 8.7E-16 107.6 12.0 108 70-186 15-148 (299)
28 PRK02126 ribonuclease Z; Provi 99.3 2.8E-11 6.1E-16 110.1 10.8 114 65-186 8-173 (334)
29 PRK02113 putative hydrolase; P 99.2 5E-11 1.1E-15 104.4 10.3 117 70-203 32-172 (252)
30 TIGR02108 PQQ_syn_pqqB coenzym 99.2 3.6E-11 7.7E-16 108.0 9.3 122 72-202 37-200 (302)
31 PRK05184 pyrroloquinoline quin 99.2 4.1E-11 8.9E-16 107.8 9.1 126 70-201 36-199 (302)
32 COG1236 YSH1 Predicted exonucl 99.2 3.9E-11 8.4E-16 112.7 8.7 125 69-203 10-166 (427)
33 PF12706 Lactamase_B_2: Beta-l 99.1 2.3E-11 5E-16 101.7 3.5 110 88-203 2-140 (194)
34 COG1782 Predicted metal-depend 99.1 3.5E-10 7.7E-15 104.4 7.8 128 70-204 191-356 (637)
35 PF13483 Lactamase_B_3: Beta-l 99.0 9.5E-10 2.1E-14 90.0 7.6 106 71-203 5-116 (163)
36 PRK00055 ribonuclease Z; Revie 99.0 1.4E-09 3.1E-14 95.7 8.0 67 71-145 18-93 (270)
37 PRK11709 putative L-ascorbate 98.9 1.6E-08 3.6E-13 92.6 11.1 90 111-204 109-231 (355)
38 KOG4736 Uncharacterized conser 98.7 2.5E-08 5.3E-13 86.9 7.4 151 74-245 96-258 (302)
39 COG2015 Alkyl sulfatase and re 98.6 2.1E-07 4.5E-12 86.0 9.5 170 69-250 122-356 (655)
40 KOG1136 Predicted cleavage and 98.5 2.8E-07 6E-12 81.7 7.8 123 70-201 14-179 (501)
41 COG2220 Predicted Zn-dependent 98.5 7.9E-07 1.7E-11 78.2 10.6 125 71-203 12-162 (258)
42 KOG1135 mRNA cleavage and poly 98.2 8.5E-06 1.8E-10 78.3 10.9 126 67-201 9-172 (764)
43 TIGR02650 RNase_Z_T_toga ribon 98.2 9.2E-06 2E-10 71.6 10.4 56 86-145 18-81 (277)
44 COG1235 PhnP Metal-dependent h 98.2 3.5E-06 7.6E-11 74.6 7.2 53 86-143 40-93 (269)
45 COG1234 ElaC Metal-dependent h 98.2 8.5E-06 1.8E-10 73.0 8.7 68 69-144 16-92 (292)
46 KOG1137 mRNA cleavage and poly 98.1 1.9E-06 4.1E-11 80.8 4.0 125 69-202 23-183 (668)
47 COG2248 Predicted hydrolase (m 98.0 0.0001 2.2E-09 63.3 12.2 121 75-202 17-186 (304)
48 KOG2121 Predicted metal-depend 97.7 4.9E-05 1.1E-09 73.8 4.9 60 72-134 460-524 (746)
49 KOG1361 Predicted hydrolase in 97.2 0.00061 1.3E-08 64.1 6.0 86 111-203 112-207 (481)
50 PF02112 PDEase_II: cAMP phosp 97.0 0.0043 9.3E-08 56.5 8.8 59 69-130 13-98 (335)
51 PF13691 Lactamase_B_4: tRNase 94.9 0.066 1.4E-06 36.4 4.8 46 74-127 13-63 (63)
52 PF14234 DUF4336: Domain of un 94.2 0.96 2.1E-05 40.3 11.7 121 75-205 22-162 (285)
53 COG5212 PDE1 Low-affinity cAMP 89.9 0.56 1.2E-05 41.3 4.7 89 111-202 112-233 (356)
54 KOG3798 Predicted Zn-dependent 71.7 15 0.00032 32.3 6.4 87 111-205 132-243 (343)
55 KOG3592 Microtubule-associated 71.5 4.8 0.0001 40.1 3.8 57 68-133 44-103 (934)
56 PF14572 Pribosyl_synth: Phosp 40.2 46 0.001 27.7 4.1 52 90-144 92-143 (184)
57 PF12000 Glyco_trans_4_3: Gkyc 38.5 53 0.0011 27.0 4.2 39 100-142 55-93 (171)
58 COG0462 PrsA Phosphoribosylpyr 37.5 81 0.0018 28.6 5.5 46 85-133 214-263 (314)
59 PRK02269 ribose-phosphate pyro 37.1 78 0.0017 28.8 5.4 36 86-122 218-257 (320)
60 TIGR01091 upp uracil phosphori 34.6 79 0.0017 26.6 4.8 58 85-146 122-183 (207)
61 PRK04923 ribose-phosphate pyro 33.8 54 0.0012 29.8 3.8 38 85-122 217-257 (319)
62 PLN02297 ribose-phosphate pyro 31.8 87 0.0019 28.6 4.8 37 85-122 230-270 (326)
63 KOG1145 Mitochondrial translat 31.2 51 0.0011 32.4 3.3 50 119-177 159-213 (683)
64 cd02791 MopB_CT_Nitrate-R-NapA 30.0 1.7E+02 0.0038 21.7 5.7 63 119-183 15-82 (122)
65 PRK11624 cdsA CDP-diglyceride 28.6 35 0.00075 30.5 1.7 28 216-243 232-259 (285)
66 PRK00129 upp uracil phosphorib 28.3 1.2E+02 0.0026 25.6 4.9 58 85-146 124-185 (209)
67 PRK07199 phosphoribosylpyropho 28.1 60 0.0013 29.2 3.1 36 85-120 211-249 (301)
68 cd00419 Ferrochelatase_C Ferro 27.0 75 0.0016 24.8 3.2 43 220-268 3-47 (135)
69 COG0276 HemH Protoheme ferro-l 25.9 1E+02 0.0022 28.1 4.2 56 217-278 166-224 (320)
70 PRK00553 ribose-phosphate pyro 25.4 77 0.0017 29.0 3.3 38 85-122 218-258 (332)
71 cd00508 MopB_CT_Fdh-Nap-like T 24.5 2.6E+02 0.0056 20.5 5.7 55 127-183 24-82 (120)
72 PRK02458 ribose-phosphate pyro 23.7 1.9E+02 0.0042 26.3 5.6 38 85-122 218-258 (323)
73 PRK11148 cyclic 3',5'-adenosin 23.6 1.4E+02 0.003 26.2 4.6 40 193-243 57-97 (275)
74 KOG2414 Putative Xaa-Pro amino 23.5 43 0.00094 31.5 1.3 20 3-22 224-244 (488)
75 cd07400 MPP_YydB Bacillus subt 23.3 1.9E+02 0.004 22.1 4.9 13 191-203 35-47 (144)
76 COG0575 CdsA CDP-diglyceride s 22.4 53 0.0011 28.9 1.7 26 218-243 217-242 (265)
77 cd01833 XynB_like SGNH_hydrola 21.9 1.7E+02 0.0037 22.6 4.4 8 195-202 3-10 (157)
78 PF14681 UPRTase: Uracil phosp 21.0 64 0.0014 27.2 1.9 55 85-145 121-183 (207)
79 cd02792 MopB_CT_Formate-Dh-Na- 20.5 3.6E+02 0.0078 19.9 5.8 55 127-183 24-82 (122)
No 1
>PLN02962 hydroxyacylglutathione hydrolase
Probab=100.00 E-value=7.5e-43 Score=304.18 Aligned_cols=226 Identities=86% Similarity=1.285 Sum_probs=199.3
Q ss_pred CCCCCCCeEEEEEEeCCCccEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCCceeEEEcCCCCCCCcCChHHHHh
Q 023537 54 SSSSSSKLLFRQTFEKESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKS 133 (281)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~~i~~Vv~TH~H~DH~gg~~~l~~ 133 (281)
++.++..|+|++++....++|||+|.+.+.++++++|||||....+.+++.+++.+.++++|++||.|+||++|+..|++
T Consensus 4 ~~~~~~~m~~~~~~~~~~~~~~Yll~d~~~~~~~avlIDP~~~~~~~~l~~l~~~g~~i~~Il~TH~H~DHigg~~~l~~ 83 (251)
T PLN02962 4 SSSSSSKLLFRQLFEKESSTYTYLLADVSHPDKPALLIDPVDKTVDRDLSLVKELGLKLIYAMNTHVHADHVTGTGLLKT 83 (251)
T ss_pred CCCCCCceEEEEeecCCceeEEEEEEeCCCCCCEEEEECCCCCcHHHHHHHHHHCCCeeEEEEcCCCCchhHHHHHHHHH
Confidence 44556789999999999999999998732114679999999656788899999999999999999999999999999999
Q ss_pred hCCCCeEEecccCCCCCceEcCCCCEEEeCCeEEEEEEcCCCCCCCeEEEECCCCCCCCCcEEEECcccccCCccCCCCC
Q 023537 134 KVPGVKSIISKASGSKADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQ 213 (281)
Q Consensus 134 ~~p~~~i~~~~~~~~~~~~~~~~g~~~~lg~~~i~~~~~pGHt~g~~~~~~~~~~~~~~~~vlftGD~~~~~~~~~~~~~ 213 (281)
++|++++++++......+..+.+|+.+.+|+..+++++|||||+|+++|++++....++.+++|+||+++..++++++++
T Consensus 84 ~~~~a~v~~~~~~~~~~d~~l~~g~~i~~g~~~l~vi~tPGHT~g~v~~~~~d~~~~~~~~~lftGD~Lf~~g~Gr~d~~ 163 (251)
T PLN02962 84 KLPGVKSIISKASGSKADLFVEPGDKIYFGDLYLEVRATPGHTAGCVTYVTGEGPDQPQPRMAFTGDALLIRGCGRTDFQ 163 (251)
T ss_pred HCCCCeEEeccccCCCCCEEeCCCCEEEECCEEEEEEECCCCCcCcEEEEeccCCCCCccceEEECCeeccCCcCCCCCC
Confidence 88899999988766666778999999999999999999999999999999864211245679999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCceEEEcCCCCCCCCcccHHHHHHhCCCCcCCHHHH-HHHhcCCCCCC
Q 023537 214 GGSSSQLYKSVHSQIFTLPKDTLIYPAHDYKGFTVSTVGEEIQYNPRLTKDEVLV-WLMLNSFISMD 279 (281)
Q Consensus 214 ~~~~~~~~~sl~~~l~~l~~~~~v~PgHG~~~~~~~~~~~~~~~n~~l~~~~~~~-~~~~~~~~~~~ 279 (281)
+++..++++|+++++..|+++++|+||||+.+.+.++++++++.|||+...+++| +.|++..+|+|
T Consensus 164 ~g~~~~l~~Sl~~~l~~L~~~~~i~PGHg~~~~~~tti~~e~~~n~~l~~~~~~fv~~~~~~~~~~p 230 (251)
T PLN02962 164 GGSSDQLYKSVHSQIFTLPKDTLIYPAHDYKGFTVSTVGEEMLYNPRLTKDEETFKTIMENLNLPYP 230 (251)
T ss_pred CCCHHHHHHHHHHHHHcCCCCeEEECCCCCCCCCCcCHHHHHhhCcccCCCHHHHHHHHhhCCCCCc
Confidence 9999999999977899999998999999987767899999999999999888889 88888888887
No 2
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=100.00 E-value=1.2e-40 Score=265.46 Aligned_cols=213 Identities=65% Similarity=0.990 Sum_probs=203.6
Q ss_pred CeEEEEEEeCCCccEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCCceeEEEcCCCCCCCcCChHHHHhhCCCCe
Q 023537 60 KLLFRQTFEKESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVK 139 (281)
Q Consensus 60 ~~~~~~~~~~~~~~~~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~~i~~Vv~TH~H~DH~gg~~~l~~~~p~~~ 139 (281)
.++|++.++..+.+++|++.+.. ++++++|||-.....+-++.++++|.++.|-+.||.|.||+.|...++..+|+++
T Consensus 8 ~~~frqlfe~~SsTytYll~d~~--~~~AviIDPV~et~~RD~qlikdLgl~LiYa~NTH~HADHiTGtg~Lkt~~pg~k 85 (237)
T KOG0814|consen 8 APIFRQLFEFESSTYTYLLGDHK--TGKAVIIDPVLETVSRDAQLIKDLGLDLIYALNTHVHADHITGTGLLKTLLPGCK 85 (237)
T ss_pred cHHHHHHhccccceEEEEeeeCC--CCceEEecchhhcccchHHHHHhcCceeeeeecceeecccccccchHHHhcccHH
Confidence 57788899999999999999865 7899999999887888899999999999999999999999999999999999999
Q ss_pred EEecccCCCCCceEcCCCCEEEeCCeEEEEEEcCCCCCCCeEEEECCCCCCCCCcEEEECcccccCCccCCCCCCCCHHH
Q 023537 140 SIISKASGSKADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQGGSSSQ 219 (281)
Q Consensus 140 i~~~~~~~~~~~~~~~~g~~~~lg~~~i~~~~~pGHt~g~~~~~~~~~~~~~~~~vlftGD~~~~~~~~~~~~~~~~~~~ 219 (281)
.+++...+.+.+..+++|+.+++|+..+++..+||||+|++.|.. .+....|+||++...+++|.||..+.+..
T Consensus 86 SVis~~SGakAD~~l~~Gd~i~~G~~~le~ratPGHT~GC~TyV~------~d~~~aFTGDalLIRgCGRTDFQqG~~~~ 159 (237)
T KOG0814|consen 86 SVISSASGAKADLHLEDGDIIEIGGLKLEVRATPGHTNGCVTYVE------HDLRMAFTGDALLIRGCGRTDFQQGCPAS 159 (237)
T ss_pred HHhhhccccccccccCCCCEEEEccEEEEEecCCCCCCceEEEEe------cCcceeeecceeEEeccCccchhccChHH
Confidence 999999999999999999999999999999999999999999998 45689999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCceEEEcCCCCCCCCcccHHHHHHhCCCCcCCHHHH-HHHhcCCCCCCC
Q 023537 220 LYKSVHSQIFTLPKDTLIYPAHDYKGFTVSTVGEEIQYNPRLTKDEVLV-WLMLNSFISMDY 280 (281)
Q Consensus 220 ~~~sl~~~l~~l~~~~~v~PgHG~~~~~~~~~~~~~~~n~~l~~~~~~~-~~~~~~~~~~~~ 280 (281)
+++|+.+++-.||.+.+|+|+|+|.++..+++.+|+++||.|+..+++| ..|.|++||||-
T Consensus 160 LyesVH~kIFTLP~d~~iYpaHdY~G~~~stV~EEk~~NPRLTk~~eeFv~IM~NLnL~yPk 221 (237)
T KOG0814|consen 160 LYESVHSKIFTLPEDYLIYPAHDYKGFLVSTVWEEKNLNPRLTKSKEEFVKIMKNLNLPYPK 221 (237)
T ss_pred HHHHHhHHheeCCCceEEeeccccCceEeeehhhhhccCcccccCHHHHHHHHHhcCCCChh
Confidence 9999999999999999999999999999999999999999999999999 999999999983
No 3
>PLN02469 hydroxyacylglutathione hydrolase
Probab=100.00 E-value=1.4e-36 Score=266.48 Aligned_cols=187 Identities=35% Similarity=0.560 Sum_probs=158.8
Q ss_pred CccEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCCceeEEEcCCCCCCCcCChHHHHhhCCCCeEEecccCC-CC
Q 023537 71 SSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASG-SK 149 (281)
Q Consensus 71 ~~~~~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~~i~~Vv~TH~H~DH~gg~~~l~~~~p~~~i~~~~~~~-~~ 149 (281)
..+++|||.+.. +++++|||||. .+.+++.+++.+.++++|++||.|+||+||+..|++.+|+++||++.... ..
T Consensus 10 ~dNy~Yli~d~~--~~~~vlIDp~~--~~~il~~l~~~g~~l~~Il~TH~H~DH~gG~~~l~~~~~~~~V~~~~~~~~~~ 85 (258)
T PLN02469 10 EDNYAYLIIDES--TKDAAVVDPVD--PEKVLQAAHEHGAKIKLVLTTHHHWDHAGGNEKIKKLVPGIKVYGGSLDNVKG 85 (258)
T ss_pred cceEEEEEEeCC--CCeEEEECCCC--hHHHHHHHHHcCCcccEEEecCCCCccccCHHHHHHHCCCCEEEEechhcCCC
Confidence 455699998742 45899999994 78899999999999999999999999999999999999999999986542 34
Q ss_pred CceEcCCCCEEEeCC-eEEEEEEcCCCCCCCeEEEECCCCCCCCCcEEEECcccccCCccCCCCCCCCHHHHHHHHHHHH
Q 023537 150 ADLHVEHGDKVSFGD-LFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQGGSSSQLYKSVHSQI 228 (281)
Q Consensus 150 ~~~~~~~g~~~~lg~-~~i~~~~~pGHt~g~~~~~~~~~~~~~~~~vlftGD~~~~~~~~~~~~~~~~~~~~~~sl~~~l 228 (281)
.+..+.+|+.+.+|+ ..+++++|||||+||++|++... .++.++|||||++|..++++. ++++..+|++|+++++
T Consensus 86 ~~~~v~~gd~i~lg~~~~~~vi~tPGHT~ghi~~~~~~~--~~~~~~lFtGDtLf~~g~Gr~--~~g~~~~~~~Sl~~~l 161 (258)
T PLN02469 86 CTHPVENGDKLSLGKDVNILALHTPCHTKGHISYYVTGK--EGEDPAVFTGDTLFIAGCGKF--FEGTAEQMYQSLCVTL 161 (258)
T ss_pred CCeEeCCCCEEEECCceEEEEEECCCCCCCCEEEEeccC--CCCCCEEEecCcccCCCcCCC--CCCCHHHHHHHHHHHH
Confidence 467889999999996 68999999999999999998531 023569999999999998884 6789999999997677
Q ss_pred hcCCCceEEEcCCCCCCC--------------------------------CcccHHHHHHhCCCCcCCH
Q 023537 229 FTLPKDTLIYPAHDYKGF--------------------------------TVSTVGEEIQYNPRLTKDE 265 (281)
Q Consensus 229 ~~l~~~~~v~PgHG~~~~--------------------------------~~~~~~~~~~~n~~l~~~~ 265 (281)
..|+++++|+|||||... .+++++.|+++|||||...
T Consensus 162 ~~Lp~~t~vypGH~yt~~nl~Fa~~vep~n~~~~~~~~~~~~~~~~~~~t~pstl~~E~~~Npflr~~~ 230 (258)
T PLN02469 162 GSLPKPTQVYCGHEYTVKNLKFALTVEPDNEKLKQKLEWAEKQRQAGLPTVPSTIEEELETNPFMRVDL 230 (258)
T ss_pred HcCCCCeEEEcCCCCchhHHHHHHhhCCCCHHHHHHHHHHHHHHHCCCCcCCccHHHHHhhCCeecCCC
Confidence 889999999999998642 2779999999999998533
No 4
>PLN02398 hydroxyacylglutathione hydrolase
Probab=100.00 E-value=6.8e-35 Score=262.00 Aligned_cols=182 Identities=32% Similarity=0.488 Sum_probs=158.1
Q ss_pred CCCccEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCCceeEEEcCCCCCCCcCChHHHHhhCCCCeEEecccC--
Q 023537 69 KESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKAS-- 146 (281)
Q Consensus 69 ~~~~~~~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~~i~~Vv~TH~H~DH~gg~~~l~~~~p~~~i~~~~~~-- 146 (281)
...++++|+|.+.. ++.+++||||. .+.+++.+++.+.++++|++||.|+||+||+..|.+.+ +++|++++.+
T Consensus 83 ~l~dNy~Yli~d~~--t~~~~vVDP~~--a~~vl~~l~~~g~~L~~ILlTH~H~DH~GG~~~L~~~~-ga~V~g~~~~~~ 157 (329)
T PLN02398 83 CLKDNYAYLLHDED--TGTVGVVDPSE--AVPVIDALSRKNRNLTYILNTHHHYDHTGGNLELKARY-GAKVIGSAVDKD 157 (329)
T ss_pred eeCceEEEEEEECC--CCEEEEEcCCC--HHHHHHHHHhcCCCceEEEECCCCchhhCCHHHHHHhc-CCEEEEehHHhh
Confidence 35667899998743 46799999994 67899999999999999999999999999999999988 8999998763
Q ss_pred -CCCCceEcCCCCEEEeCCeEEEEEEcCCCCCCCeEEEECCCCCCCCCcEEEECcccccCCccCCCCCCCCHHHHHHHHH
Q 023537 147 -GSKADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQGGSSSQLYKSVH 225 (281)
Q Consensus 147 -~~~~~~~~~~g~~~~lg~~~i~~~~~pGHt~g~~~~~~~~~~~~~~~~vlftGD~~~~~~~~~~~~~~~~~~~~~~sl~ 225 (281)
....+..+.+|+.+.+|+.+++++++||||+||++|++ ++.++||+||++|..++++. +.++.+++++|++
T Consensus 158 ~i~~~d~~v~dGd~i~lgg~~l~vi~tPGHT~GhI~~~~------~~~~vLFtGDtLf~~g~Gr~--feg~~~~~~~SL~ 229 (329)
T PLN02398 158 RIPGIDIVLKDGDKWMFAGHEVLVMETPGHTRGHISFYF------PGSGAIFTGDTLFSLSCGKL--FEGTPEQMLSSLQ 229 (329)
T ss_pred hccCCcEEeCCCCEEEECCeEEEEEeCCCcCCCCEEEEE------CCCCEEEECCCcCCCCcCCC--CCCCHHHHHHHHH
Confidence 23356788999999999999999999999999999998 44579999999999888874 5789999999995
Q ss_pred HHHhcCCCceEEEcCCCCCC--------------------------------CCcccHHHHHHhCCCCcCC
Q 023537 226 SQIFTLPKDTLIYPAHDYKG--------------------------------FTVSTVGEEIQYNPRLTKD 264 (281)
Q Consensus 226 ~~l~~l~~~~~v~PgHG~~~--------------------------------~~~~~~~~~~~~n~~l~~~ 264 (281)
++..|++++.|+|||||+. ..+++++.|++.|||||..
T Consensus 230 -rL~~L~~~t~VypGHgyt~~Nl~Fa~~vep~n~~l~~~~~~v~~~r~~~~~t~Pstl~~E~~~NPFlR~~ 299 (329)
T PLN02398 230 -KIISLPDDTNIYCGHEYTLSNSKFALSIEPNNEVLQSYAAHVAHLRSKGLPTIPTTVKMEKACNPFLRTS 299 (329)
T ss_pred -HHHcCCCCeEEECCCCChhcchhhHhhhCCChHHHHHHHHHHHHHHHcCCCcCCccHHHHHhhCCeecCC
Confidence 9999999888999999853 1577999999999999843
No 5
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=100.00 E-value=9.9e-34 Score=247.60 Aligned_cols=183 Identities=37% Similarity=0.576 Sum_probs=157.3
Q ss_pred CCCccEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCCceeEEEcCCCCCCCcCChHHHHhhCCCCeEEecccCC-
Q 023537 69 KESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASG- 147 (281)
Q Consensus 69 ~~~~~~~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~~i~~Vv~TH~H~DH~gg~~~l~~~~p~~~i~~~~~~~- 147 (281)
.-..+++|+|.+. .++++|||||. ...+.+.+++.+.++++|++||.|+||+||+..|.+.++ +++|+++...
T Consensus 6 ~~~dN~~yli~~~---~~~~ilID~g~--~~~i~~~l~~~g~~l~~Il~TH~H~DHigG~~~l~~~~~-~~V~~~~~~~~ 79 (248)
T TIGR03413 6 ALSDNYIWLLHDP---DGQAAVVDPGE--AEPVLDALEARGLTLTAILLTHHHHDHVGGVAELLEAFP-APVYGPAEERI 79 (248)
T ss_pred ccccEEEEEEEcC---CCCEEEEcCCC--hHHHHHHHHHcCCeeeEEEeCCCCccccCCHHHHHHHCC-CeEEecccccC
Confidence 3567889999983 34899999995 567889999999999999999999999999999999884 9999987652
Q ss_pred CCCceEcCCCCEEEeCCeEEEEEEcCCCCCCCeEEEECCCCCCCCCcEEEECcccccCCccCCCCCCCCHHHHHHHHHHH
Q 023537 148 SKADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQGGSSSQLYKSVHSQ 227 (281)
Q Consensus 148 ~~~~~~~~~g~~~~lg~~~i~~~~~pGHt~g~~~~~~~~~~~~~~~~vlftGD~~~~~~~~~~~~~~~~~~~~~~sl~~~ 227 (281)
......+.+|+.+.+|+.+++++++||||+|+++|++ ++.++||+||+++..++++. ..++..+|++|++ +
T Consensus 80 ~~~~~~v~~g~~~~~g~~~i~v~~tpGHT~g~i~~~~------~~~~~lftGDtl~~~g~g~~--~~~~~~~~~~Sl~-~ 150 (248)
T TIGR03413 80 PGITHPVKDGDTVTLGGLEFEVLAVPGHTLGHIAYYL------PDSPALFCGDTLFSAGCGRL--FEGTPEQMYDSLQ-R 150 (248)
T ss_pred CCCcEEeCCCCEEEECCEEEEEEECCCCCcccEEEEE------CCCCEEEEcCccccCCcCCC--CCCCHHHHHHHHH-H
Confidence 2346788999999999999999999999999999998 44689999999998887774 5679999999995 9
Q ss_pred HhcCCCceEEEcCCCCCC--------------------------------CCcccHHHHHHhCCCCcCCHH
Q 023537 228 IFTLPKDTLIYPAHDYKG--------------------------------FTVSTVGEEIQYNPRLTKDEV 266 (281)
Q Consensus 228 l~~l~~~~~v~PgHG~~~--------------------------------~~~~~~~~~~~~n~~l~~~~~ 266 (281)
++.++++++|+||||+.. ..+++++.|+++|||||....
T Consensus 151 l~~l~~~~~i~pGH~~~~~n~~fa~~~~p~~~~l~~~~~~~~~~~~~~~~t~pstl~~E~~~Npflr~~~~ 221 (248)
T TIGR03413 151 LAALPDDTLVYCAHEYTLSNLRFALTVEPDNPALQERLKEVEALRAQGQPTLPSTLGLERATNPFLRADDP 221 (248)
T ss_pred HHcCCCCeEEECCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHhhCCeecCCCH
Confidence 999999888999999743 157799999999999995433
No 6
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=100.00 E-value=2.7e-33 Score=245.15 Aligned_cols=181 Identities=33% Similarity=0.456 Sum_probs=156.3
Q ss_pred CCCccEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCCceeEEEcCCCCCCCcCChHHHHhhCCCCeEEecccCCC
Q 023537 69 KESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASGS 148 (281)
Q Consensus 69 ~~~~~~~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~~i~~Vv~TH~H~DH~gg~~~l~~~~p~~~i~~~~~~~~ 148 (281)
....+++|+|.+. +++++|||||. .+.+++.+++.+.++++|++||.|+||+||+..|.+++|++++|++.....
T Consensus 8 ~~~dNy~~li~~~---~~~~ilIDpg~--~~~vl~~l~~~g~~l~~IllTH~H~DHigG~~~l~~~~~~~~V~~~~~~~~ 82 (251)
T PRK10241 8 AFDDNYIWVLNDE---AGRCLIVDPGE--AEPVLNAIAENNWQPEAIFLTHHHHDHVGGVKELVEKFPQIVVYGPQETQD 82 (251)
T ss_pred eecceEEEEEEcC---CCcEEEECCCC--hHHHHHHHHHcCCccCEEEeCCCCchhhccHHHHHHHCCCCEEEecccccc
Confidence 3456788999874 56799999995 678899999999999999999999999999999999998899999865432
Q ss_pred -CCceEcCCCCEEEeCCeEEEEEEcCCCCCCCeEEEECCCCCCCCCcEEEECcccccCCccCCCCCCCCHHHHHHHHHHH
Q 023537 149 -KADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQGGSSSQLYKSVHSQ 227 (281)
Q Consensus 149 -~~~~~~~~g~~~~lg~~~i~~~~~pGHt~g~~~~~~~~~~~~~~~~vlftGD~~~~~~~~~~~~~~~~~~~~~~sl~~~ 227 (281)
.....+.+|+.+.+|+.+++++++||||+||++|+.. .++|+||+++..++++. ..++.++|++|++ +
T Consensus 83 ~~~~~~v~~g~~i~ig~~~~~vi~tPGHT~ghi~~~~~--------~~lFtGDtlf~~g~gr~--f~g~~~~~~~Sl~-k 151 (251)
T PRK10241 83 KGTTQVVKDGETAFVLGHEFSVFATPGHTLGHICYFSK--------PYLFCGDTLFSGGCGRL--FEGTASQMYQSLK-K 151 (251)
T ss_pred cCCceEeCCCCEEEeCCcEEEEEEcCCCCccceeeecC--------CcEEEcCeeccCCcCCC--CCCCHHHHHHHHH-H
Confidence 3456788999999999999999999999999999741 57999999999888875 5789999999995 9
Q ss_pred HhcCCCceEEEcCCCCCC--------------------------------CCcccHHHHHHhCCCCcCCH
Q 023537 228 IFTLPKDTLIYPAHDYKG--------------------------------FTVSTVGEEIQYNPRLTKDE 265 (281)
Q Consensus 228 l~~l~~~~~v~PgHG~~~--------------------------------~~~~~~~~~~~~n~~l~~~~ 265 (281)
+..|+++++|+|||||+. ..+++++.|++.|||||...
T Consensus 152 l~~l~~~t~i~pgH~y~~~n~~fa~~~~p~n~~l~~~~~~~~~~~~~~~~t~pstl~~E~~~Npflr~~~ 221 (251)
T PRK10241 152 INALPDDTLICCAHEYTLSNMKFALSILPHDLSINDYYRKVKELRAKNQITLPVILKNERQINLFLRTED 221 (251)
T ss_pred HHcCCCCEEEECCCCChhhhHHHHHHhCCCCHHHHHHHHHHHHHHHCCCCcCCccHHHHHhhCCeecCCC
Confidence 999999989999999753 15779999999999998433
No 7
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=99.98 E-value=4.5e-31 Score=227.18 Aligned_cols=192 Identities=34% Similarity=0.543 Sum_probs=159.1
Q ss_pred EeCCCccEEEEEEe-cCCCCCcEEEEeCCCCChHHHHHHHHH---cCCceeEEEcCCCCCCCcCChHHHHhhCC-CCeEE
Q 023537 67 FEKESSTYTYLLAD-VNHPDKPALLIDPVDKTVDRDLNVIKE---LGLKLVYAMNTHVHADHVTGTGLIKSKVP-GVKSI 141 (281)
Q Consensus 67 ~~~~~~~~~yli~~-~~~~~~~~ilID~G~~~~~~l~~~l~~---~~~~i~~Vv~TH~H~DH~gg~~~l~~~~p-~~~i~ 141 (281)
+....++|+||+.+ .. ...+.++||.. .+.+...+++ .+.++.+||.||+|+||+||+..|.+.+| +++++
T Consensus 7 ~~~~~~Ny~YLl~~~~~--~~~a~~vDP~~--pe~v~~~~~~~~~~~~~l~~Il~THhH~DHsGGn~~i~~~~~~~~~v~ 82 (265)
T KOG0813|consen 7 LPTLQDNYMYLLGDGDK--TIDADLVDPAE--PEYVIPSLKKLDDENRRLTAILTTHHHYDHSGGNEDIKREIPYDIKVI 82 (265)
T ss_pred ccccCCceEEEEecccc--eeeeeeecCcc--hHHHHHHHHhhhhccCceeEEEeccccccccCcHHHHHhhccCCcEEe
Confidence 45678899999998 22 34455666663 5666666666 67889999999999999999999999865 89999
Q ss_pred ecc-cCCCCCceEcCCCCEEEeCCeEEEEEEcCCCCCCCeEEEECCCCCCCCCcEEEECcccccCCccCCCCCCCCHHHH
Q 023537 142 ISK-ASGSKADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQGGSSSQL 220 (281)
Q Consensus 142 ~~~-~~~~~~~~~~~~g~~~~lg~~~i~~~~~pGHt~g~~~~~~~~~~~~~~~~vlftGD~~~~~~~~~~~~~~~~~~~~ 220 (281)
.+. .........+++|+.+.+|+.++++++|||||.||+||++... .+.+.+|+||+++..++++ ++++..++|
T Consensus 83 g~~~~r~~~i~~~~~~~e~~~~~g~~v~~l~TPgHT~~hi~~~~~~~---~~e~~iFtGDtlf~~GcG~--~FEgt~~~M 157 (265)
T KOG0813|consen 83 GGADDRIPGITRGLKDGETVTVGGLEVRCLHTPGHTAGHICYYVTES---TGERAIFTGDTLFGAGCGR--FFEGTAEQM 157 (265)
T ss_pred cCChhcCccccccCCCCcEEEECCEEEEEEeCCCccCCcEEEEeecC---CCCCeEEeCCceeecCccc--hhcCCHHHH
Confidence 884 4455566779999999999999999999999999999999642 5679999999999999986 578899999
Q ss_pred HHHHHHHHhcCCCceEEEcCCCCCCC---------------------------------CcccHHHHHHhCCCCcCCHHH
Q 023537 221 YKSVHSQIFTLPKDTLIYPAHDYKGF---------------------------------TVSTVGEEIQYNPRLTKDEVL 267 (281)
Q Consensus 221 ~~sl~~~l~~l~~~~~v~PgHG~~~~---------------------------------~~~~~~~~~~~n~~l~~~~~~ 267 (281)
..++. .+..|++++.|+|||+|... ...++++++.+|||++...+.
T Consensus 158 ~~sl~-~l~~L~~~t~iypGHeYt~~n~kf~~~ve~~n~~~q~~l~~~~~~~~~~~~t~~p~tl~~e~~~Npf~r~~~~~ 236 (265)
T KOG0813|consen 158 DSSLN-ELIALPDDTRIYPGHEYTKSNLKFARYVEPRNEVEQEKLDWLVERRSKEKPTMVPSTLGEEKLYNPFMRLKKEK 236 (265)
T ss_pred HHhHH-HhhcCCCCceEccCcccccccceeeeecccccHHHHHHHHHHHHHhhccCcccChhhHHHHHhcCchhhcchHh
Confidence 99996 59999999999999998541 347899999999999865544
Q ss_pred H
Q 023537 268 V 268 (281)
Q Consensus 268 ~ 268 (281)
+
T Consensus 237 v 237 (265)
T KOG0813|consen 237 V 237 (265)
T ss_pred h
Confidence 4
No 8
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.90 E-value=2e-22 Score=187.43 Aligned_cols=163 Identities=22% Similarity=0.293 Sum_probs=120.8
Q ss_pred eCCCccEEEEEEecCCCCCcEEEEeCCC-CChHHHHHHHHHc-CC-ceeEEEcCCCCCCCcCChHHHHhhCCCCeEEecc
Q 023537 68 EKESSTYTYLLADVNHPDKPALLIDPVD-KTVDRDLNVIKEL-GL-KLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISK 144 (281)
Q Consensus 68 ~~~~~~~~yli~~~~~~~~~~ilID~G~-~~~~~l~~~l~~~-~~-~i~~Vv~TH~H~DH~gg~~~l~~~~p~~~i~~~~ 144 (281)
..+...|+|+|.+ ++.+|||||. ...+.+++.+++. +. ++++|++||.|+||+||+..+.+.+|++++++++
T Consensus 28 ~~g~~~NsyLI~~-----~~~vLIDtg~~~~~~~~~~~l~~~~~~~~Id~IilTH~H~DHiggl~~l~~~~p~a~V~~~~ 102 (394)
T PRK11921 28 HRGSSYNSYLIKD-----EKTVLIDTVWQPFAKEFVENLKKEIDLDKIDYIVANHGEIDHSGALPELMKEIPDTPIYCTK 102 (394)
T ss_pred CCceEEEEEEEeC-----CCEEEEeCCCCCcHHHHHHHHHhhcCcccCCEEEeCCCCCchhhHHHHHHHHCCCCEEEECH
Confidence 3456679999975 4689999994 3356677777654 43 6899999999999999999999999999999986
Q ss_pred cCC---------CCCceEcCCCCEEEeCCeEEEEEEcCC-CCCCCeEEEECCCCCCCCCcEEEECcccccCCccCCCCC-
Q 023537 145 ASG---------SKADLHVEHGDKVSFGDLFLEVRATPG-HTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQ- 213 (281)
Q Consensus 145 ~~~---------~~~~~~~~~g~~~~lg~~~i~~~~~pG-Ht~g~~~~~~~~~~~~~~~~vlftGD~~~~~~~~~~~~~- 213 (281)
... ......+.+|+.+++|+.+++++++|| |+||+++++. ++.++||+||++........-+.
T Consensus 103 ~~~~~l~~~~~~~~~~~~v~~g~~l~lG~~~l~~i~tP~~H~p~~~~~y~------~~~~vLFsgD~fG~~~~~~~~~~d 176 (394)
T PRK11921 103 NGAKSLKGHYHQDWNFVVVKTGDRLEIGSNELIFIEAPMLHWPDSMFTYL------TGDNILFSNDAFGQHYASELMYND 176 (394)
T ss_pred HHHHHHHHHhCCCCceEEeCCCCEEeeCCeEEEEEeCCCCCCCCceEEEE------cCCCEEEecCcccccccCcccccc
Confidence 421 112356889999999999999999998 9999999998 56789999998755432211010
Q ss_pred -CCCH------------------HHHHHHHHHHHh--cCCCceEEEcCCCC
Q 023537 214 -GGSS------------------SQLYKSVHSQIF--TLPKDTLIYPAHDY 243 (281)
Q Consensus 214 -~~~~------------------~~~~~sl~~~l~--~l~~~~~v~PgHG~ 243 (281)
.... ..+.+.+ ++++ .++.+ +|+|+||+
T Consensus 177 ~~~~~~~~~~~~~y~~~i~~p~~~~v~~~l-~~l~~~~l~~~-~i~p~HG~ 225 (394)
T PRK11921 177 LVDQGELYQEAIKYYANILTPFSPLVIKKI-EEILSLNLPVD-MICPSHGV 225 (394)
T ss_pred cccchhHHHHHHHHHHHHHhhhHHHHHHHH-HHHHhcCCCCC-EEEcCCcc
Confidence 0111 1223344 4777 45666 89999994
No 9
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=99.89 E-value=7.1e-22 Score=170.89 Aligned_cols=164 Identities=34% Similarity=0.510 Sum_probs=124.4
Q ss_pred CCccEEEEEEecCCCCCcEEEEeCCCCC--hHHHHHHHHHcCCceeEEEcCCCCCCCcCChHHHHhhCCCCeEEecccC-
Q 023537 70 ESSTYTYLLADVNHPDKPALLIDPVDKT--VDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKAS- 146 (281)
Q Consensus 70 ~~~~~~yli~~~~~~~~~~ilID~G~~~--~~~l~~~l~~~~~~i~~Vv~TH~H~DH~gg~~~l~~~~p~~~i~~~~~~- 146 (281)
...+++|++... .+..+|||+|... ...+.+.+.+.+.++++|++||.|+||+||+..+.+..+.++++..+..
T Consensus 22 ~~~~~~~~~~~~---~~~~~liD~G~~~~~~~~~~~~l~~~~~~i~~vilTH~H~DH~gg~~~~~~~~~~~~~~~~~~~~ 98 (252)
T COG0491 22 LSGNSVYLLVDG---EGGAVLIDTGLGDADAEALLEALAALGLDVDAILLTHGHFDHIGGAAVLKEAFGAAPVIAPAEVP 98 (252)
T ss_pred cccccEEEEEcC---CCceEEEeCCCCchHHHHHHHHHHHcCCChheeeecCCchhhhccHHHHHhhcCCceEEccchhh
Confidence 344456666652 2379999999754 5778888888888999999999999999999999887644666333321
Q ss_pred ---------------------CCCCceEcCCCCEEEeCCeEEEEEEcCCCCCCCeEEEECCCCCCCCCcEEEECcccccC
Q 023537 147 ---------------------GSKADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIR 205 (281)
Q Consensus 147 ---------------------~~~~~~~~~~g~~~~lg~~~i~~~~~pGHt~g~~~~~~~~~~~~~~~~vlftGD~~~~~ 205 (281)
.......+.+++.+.+++..++++++||||+||+++++++ .+++|+||+++..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~tpGHT~g~~~~~~~~------~~~l~~gD~~~~~ 172 (252)
T COG0491 99 LLLREEILRKAGVTAEAYAAPGASPLRALEDGDELDLGGLELEVLHTPGHTPGHIVFLLED------GGVLFTGDTLFAG 172 (252)
T ss_pred hhhhcccccccccccccCCCCccccceecCCCCEEEecCeEEEEEECCCCCCCeEEEEECC------ccEEEecceeccC
Confidence 0122345568899999999999999999999999999954 3499999999888
Q ss_pred C--ccCCCCCCCCHHHHHHHHHHHHhcCCC-ceEEEcCCCC
Q 023537 206 G--CGRTDFQGGSSSQLYKSVHSQIFTLPK-DTLIYPAHDY 243 (281)
Q Consensus 206 ~--~~~~~~~~~~~~~~~~sl~~~l~~l~~-~~~v~PgHG~ 243 (281)
. ......+..+..+++++++ ++..+.. ...|+||||.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~s~~-~~~~~~~~~~~v~pgHg~ 212 (252)
T COG0491 173 DTGVGRLDLPGGDAAQLLASLR-RLLLLLLPDTLVLPGHGP 212 (252)
T ss_pred CCCCccccCCCCCHHHHHHHHH-HHHhccCCCCEEECCCCc
Confidence 5 4444444445889999996 6555443 3589999994
No 10
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.87 E-value=4.2e-21 Score=182.13 Aligned_cols=163 Identities=21% Similarity=0.278 Sum_probs=120.2
Q ss_pred eCCCccEEEEEEecCCCCCcEEEEeCCCC-ChHHHHHHHHHc-C-CceeEEEcCCCCCCCcCChHHHHhhCCCCeEEecc
Q 023537 68 EKESSTYTYLLADVNHPDKPALLIDPVDK-TVDRDLNVIKEL-G-LKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISK 144 (281)
Q Consensus 68 ~~~~~~~~yli~~~~~~~~~~ilID~G~~-~~~~l~~~l~~~-~-~~i~~Vv~TH~H~DH~gg~~~l~~~~p~~~i~~~~ 144 (281)
..+...|+|||.+ ++.+|||||.. ....+++.+++. + .+|++||+||.|.||+||+..+.+++|++++++++
T Consensus 30 ~~G~t~NsYLI~~-----~~~vLIDtg~~~~~~~~l~~l~~~~~~~~Id~IilTH~H~DH~Ggl~~Ll~~~p~a~V~~s~ 104 (479)
T PRK05452 30 LRGSSYNSYLIRE-----EKNVLIDTVDHKFSREFVQNLRNEIDLADIDYIVINHAEEDHAGALTELMAQIPDTPIYCTA 104 (479)
T ss_pred CCCcEEEEEEEEC-----CCEEEEeCCCcccHHHHHHHHHhcCCHhhCCEEEeCCCCcchhchHHHHHHHCCCCEEEECH
Confidence 4556779999985 46899999953 356677777643 3 36899999999999999999999988999999986
Q ss_pred cCC----------CCCceEcCCCCEEEeCC-eEEEEEEcCC-CCCCCeEEEECCCCCCCCCcEEEECcccccCCccCCCC
Q 023537 145 ASG----------SKADLHVEHGDKVSFGD-LFLEVRATPG-HTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDF 212 (281)
Q Consensus 145 ~~~----------~~~~~~~~~g~~~~lg~-~~i~~~~~pG-Ht~g~~~~~~~~~~~~~~~~vlftGD~~~~~~~~~~~~ 212 (281)
... ......+++|+.+.+|+ .+++++++|| |+||++++++ ++.++|||||++........-+
T Consensus 105 ~~~~~l~~~~~~~~~~~~~v~~G~~l~lG~~~~l~~i~tP~~H~pgs~~~y~------~~~~vLFsgD~fG~~~~~~~~f 178 (479)
T PRK05452 105 NAIDSINGHHHHPEWNFNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTYL------TGDAVLFSNDAFGQHYCDEHLF 178 (479)
T ss_pred HHHHHHHHhhcCCcCeEEEeCCCCEEecCCCcEEEEEECCCCCCCCceEEEE------cCCCEEEecccccCCCCchhhh
Confidence 431 11236688999999994 7999999996 9999999998 5679999999865443221101
Q ss_pred CCC-C-------------------HHHHHHHHHHHHh--cCCCceEEEcCCCC
Q 023537 213 QGG-S-------------------SSQLYKSVHSQIF--TLPKDTLIYPAHDY 243 (281)
Q Consensus 213 ~~~-~-------------------~~~~~~sl~~~l~--~l~~~~~v~PgHG~ 243 (281)
... . ...+.+.+ ++++ .|+.+ +|+||||+
T Consensus 179 ~d~~~~~~~~~~~~~y~~~i~~p~~~~v~~~l-~~~~~l~l~~~-~i~p~HG~ 229 (479)
T PRK05452 179 NDEVDQTELFEQCQRYYANILTPFSRLVTPKI-TEILGFNLPVD-MIATSHGV 229 (479)
T ss_pred cccCchHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHhhcCCCCC-EEECCCCc
Confidence 100 0 11235556 4676 45666 89999995
No 11
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.86 E-value=5.7e-20 Score=151.84 Aligned_cols=159 Identities=30% Similarity=0.469 Sum_probs=123.3
Q ss_pred CCccEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCC-ceeEEEcCCCCCCCcCChHHHHhhCCCCeEEecccCC-
Q 023537 70 ESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGL-KLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASG- 147 (281)
Q Consensus 70 ~~~~~~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~-~i~~Vv~TH~H~DH~gg~~~l~~~~p~~~i~~~~~~~- 147 (281)
...+++|+|.. +++.+|||||......+.+.+++.+. ++++|++||.|.||++|+..+.+. +++++++++...
T Consensus 3 ~~~~~~~li~~----~~~~iliD~g~~~~~~~~~~l~~~~~~~i~~i~iTH~H~DH~~g~~~~~~~-~~~~i~~~~~~~~ 77 (183)
T smart00849 3 GVGVNSYLVEG----DGGAILIDTGPGEAEDLLAELKKLGPKDIDAIILTHGHPDHIGGLPELLEA-PGAPVYAPEGTAE 77 (183)
T ss_pred ccceeEEEEEe----CCceEEEeCCCChhHHHHHHHHHcCchhhcEEEecccCcchhccHHHHHhC-CCCcEEEchhhhH
Confidence 45678999998 78899999996544466666777653 689999999999999999999887 588999876422
Q ss_pred ------------------CCCceEcCCCCEEEeCCeEEEEEEcCCCCCCCeEEEECCCCCCCCCcEEEECcccccCCc-c
Q 023537 148 ------------------SKADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGC-G 208 (281)
Q Consensus 148 ------------------~~~~~~~~~g~~~~lg~~~i~~~~~pGHt~g~~~~~~~~~~~~~~~~vlftGD~~~~~~~-~ 208 (281)
......+..++.+.+++.+++++++|||+++++++++ ++.+++|+||+.+.... .
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~------~~~~vl~~gD~~~~~~~~~ 151 (183)
T smart00849 78 LLKDLLKLGGALGAEAPPPPPDRTLKDGEELDLGGLELEVIHTPGHTPGSIVLYL------PEGKILFTGDLLFSGGIGR 151 (183)
T ss_pred HHhccchhccccCcCCCCCccceecCCCCEEEeCCceEEEEECCCCCCCcEEEEE------CCCCEEEECCeeeccCCCC
Confidence 1123457889999999999999999999999999998 44789999999977652 1
Q ss_pred CC-CCCCCCHHHHHHHHHHHHhcCCCceEEEcCC
Q 023537 209 RT-DFQGGSSSQLYKSVHSQIFTLPKDTLIYPAH 241 (281)
Q Consensus 209 ~~-~~~~~~~~~~~~sl~~~l~~l~~~~~v~PgH 241 (281)
.. .........+.+.++ ++...... +++|+|
T Consensus 152 ~~~~~~~~~~~~~~~~~~-~~~~~~~~-~i~~~H 183 (183)
T smart00849 152 TDDDGGDASASDSLESLL-KLLALDPE-LVVPGH 183 (183)
T ss_pred cccCCCCccHHHHHHHHH-HhhcCCcc-EeecCC
Confidence 11 122345677888885 66666655 689998
No 12
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=99.83 E-value=1.8e-20 Score=154.92 Aligned_cols=161 Identities=22% Similarity=0.267 Sum_probs=118.8
Q ss_pred CCCccEEEEEEecCCCCCcEEEEeCCCCChHHHHH---HHHHcCCceeEEEcCCCCCCCcCChHHHHhhCCCCeEEeccc
Q 023537 69 KESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLN---VIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKA 145 (281)
Q Consensus 69 ~~~~~~~yli~~~~~~~~~~ilID~G~~~~~~l~~---~l~~~~~~i~~Vv~TH~H~DH~gg~~~l~~~~p~~~i~~~~~ 145 (281)
++.++|+|+|+. +++.+|||||......... .....+.+|++||+||.|+||+||+..|.+.++...+.....
T Consensus 2 ~~~~~n~~li~~----~~~~iliD~G~~~~~~~~~~~~~~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~~~~~~~~~~~~ 77 (194)
T PF00753_consen 2 GEGGSNSYLIEG----GDGAILIDTGLDPDFAKELELALLGISGEDIDAVILTHAHPDHIGGLPELLEAGPVVIIYSSAD 77 (194)
T ss_dssp SSEEEEEEEEEE----TTEEEEESEBSSHHHHHHHHHHHHHHTGGGEEEEEESSSSHHHHTTHHHHHHHTTEEEEEEHHH
T ss_pred CCeeEEEEEEEE----CCEEEEEeCCCCchhhHHhhhhHhhccCCCeEEEEECcccccccccccccccccceeeeecccc
Confidence 456789999998 8999999999754333332 234445679999999999999999999999985444444332
Q ss_pred CC-------------------CCCceEcCCCCEEEeCCeEEEEEEcCCCCCCCeEEEECCCCCCCCCcEEEECcccccCC
Q 023537 146 SG-------------------SKADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRG 206 (281)
Q Consensus 146 ~~-------------------~~~~~~~~~g~~~~lg~~~i~~~~~pGHt~g~~~~~~~~~~~~~~~~vlftGD~~~~~~ 206 (281)
.. ...............++..+.+...++|++++++++. ++.++||+||+++...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~vlftGD~~~~~~ 151 (194)
T PF00753_consen 78 AAKAIRPPDRDSASRRGPAVPPPPIIDEDEDDLEIGGDRILFIIPGPGHGSDSLIIYL------PGGKVLFTGDLLFSNE 151 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHESEEEEEETTTEEEEETTEEEEEEESSSSSTTEEEEEE------TTTTEEEEETTSCTTT
T ss_pred ccccccccccccccccccccccccceeeecccccccccccccceeccccCCcceEEEe------CCCcEEEeeeEeccCC
Confidence 10 1111223344556667788888899999999999998 6679999999998876
Q ss_pred ccCCCC----------CCCCHHHHHHHHHHHHhcCCCceEEEcCC
Q 023537 207 CGRTDF----------QGGSSSQLYKSVHSQIFTLPKDTLIYPAH 241 (281)
Q Consensus 207 ~~~~~~----------~~~~~~~~~~sl~~~l~~l~~~~~v~PgH 241 (281)
...... ...+...+.++++ ++..++++ +|+|||
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~-~ii~gH 194 (194)
T PF00753_consen 152 HPNPDPDLPLRGADVRYGSNWEESIEALR-RLEALDPE-VIIPGH 194 (194)
T ss_dssp SSSSSTSHTTTTHTTSHTTHHHHHHHHHH-HHHTSTTS-EEEESS
T ss_pred ccccccccccccccccCcHHHHHHHHHHH-HHHCCCCC-EEEeCc
Confidence 554433 1346788888994 89999988 678898
No 13
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.79 E-value=6.3e-18 Score=153.21 Aligned_cols=163 Identities=22% Similarity=0.277 Sum_probs=124.3
Q ss_pred eCCCccEEEEEEecCCCCCcEEEEeCCC-CChHHHHHHHHHc-C-CceeEEEcCCCCCCCcCChHHHHhhCCCCeEEecc
Q 023537 68 EKESSTYTYLLADVNHPDKPALLIDPVD-KTVDRDLNVIKEL-G-LKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISK 144 (281)
Q Consensus 68 ~~~~~~~~yli~~~~~~~~~~ilID~G~-~~~~~l~~~l~~~-~-~~i~~Vv~TH~H~DH~gg~~~l~~~~p~~~i~~~~ 144 (281)
..+...|+|||.+ ++.+||||+. ...+.+++.+++. + .+|+|||++|..+||+|.+..|.+.+|++++++++
T Consensus 31 ~~GttyNSYLI~~-----~k~aLID~~~~~~~~~~l~~l~~~id~k~iDYIi~~H~ePDhsg~l~~ll~~~p~a~ii~s~ 105 (388)
T COG0426 31 PRGTTYNSYLIVG-----DKTALIDTVGEKFFDEYLENLSKYIDPKEIDYIIVNHTEPDHSGSLPELLELAPNAKIICSK 105 (388)
T ss_pred CCCceeeeEEEeC-----CcEEEECCCCcchHHHHHHHHHhhcChhcCeEEEECCCCcchhhhHHHHHHhCCCCEEEeeH
Confidence 3567779999995 7799999984 4567788888775 3 35999999999999999999999999999999997
Q ss_pred cCC---------CCCceEcCCCCEEEeCCeEEEEEEcC-CCCCCCeEEEECCCCCCCCCcEEEECcccccCCccCCCCCC
Q 023537 145 ASG---------SKADLHVEHGDKVSFGDLFLEVRATP-GHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQG 214 (281)
Q Consensus 145 ~~~---------~~~~~~~~~g~~~~lg~~~i~~~~~p-GHt~g~~~~~~~~~~~~~~~~vlftGD~~~~~~~~~~~~~~ 214 (281)
... ......+++|+++.+|+.+++++.+| -|+||+++.+. ++.++|||+|++....+... .+.
T Consensus 106 ~~~~~L~~~~~~~~~~~ivk~Gd~ldlGg~tL~Fi~ap~LHWPd~m~TYd------~~~kILFS~D~fG~h~~~~~-~fd 178 (388)
T COG0426 106 LAARFLKGFYHDPEWFKIVKTGDTLDLGGHTLKFIPAPFLHWPDTMFTYD------PEDKILFSCDAFGAHVCDDY-RFD 178 (388)
T ss_pred HHHHHHHHhcCCccceeecCCCCEeccCCcEEEEEeCCCCCCCCceeEee------cCCcEEEccccccccccchh-ccc
Confidence 521 11157889999999999999999998 69999999995 77899999998866555532 233
Q ss_pred CCHHHHH------------------HHHHHHHhcCCCceEEEcCCCC
Q 023537 215 GSSSQLY------------------KSVHSQIFTLPKDTLIYPAHDY 243 (281)
Q Consensus 215 ~~~~~~~------------------~sl~~~l~~l~~~~~v~PgHG~ 243 (281)
.+...+. ....+++..++-+ .|+|+||+
T Consensus 179 ed~~~~~~~~~~Y~~~lm~p~~~~v~~~l~~~~~l~i~-~IaP~HG~ 224 (388)
T COG0426 179 EDIEELLPDMRKYYANLMAPNARLVLWALKKIKLLKIE-MIAPSHGP 224 (388)
T ss_pred cCHHHHHHHHHHHHHHhhcccHHHHHHHHhhhcccCcc-EEEcCCCc
Confidence 3322221 1111244444555 89999994
No 14
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=99.72 E-value=1.3e-16 Score=128.92 Aligned_cols=152 Identities=20% Similarity=0.249 Sum_probs=102.2
Q ss_pred CccEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCCceeEEEcCCCCCCCcCChHHHHhhCCCCeEEecccCC---
Q 023537 71 SSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASG--- 147 (281)
Q Consensus 71 ~~~~~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~~i~~Vv~TH~H~DH~gg~~~l~~~~p~~~i~~~~~~~--- 147 (281)
.+-|+|+... +++.|+|||-. ......+++.+.| .+++|++||. ||+..+..+++.+ +++|+++.++.
T Consensus 21 ~dfng~~~~~----p~GnilIDP~~-ls~~~~~~l~a~g-gv~~IvLTn~--dHvR~A~~ya~~~-~a~i~~p~~d~~~~ 91 (199)
T PF14597_consen 21 LDFNGHAWRR----PEGNILIDPPP-LSAHDWKHLDALG-GVAWIVLTNR--DHVRAAEDYAEQT-GAKIYGPAADAAQF 91 (199)
T ss_dssp EEEEEEEE------TT--EEES------HHHHHHHHHTT---SEEE-SSG--GG-TTHHHHHHHS---EEEEEGGGCCC-
T ss_pred cCceeEEEEc----CCCCEEecCcc-ccHHHHHHHHhcC-CceEEEEeCC--hhHhHHHHHHHHh-CCeeeccHHHHhhC
Confidence 4446788877 68899999995 4667778888776 6899999985 9999999999998 99999998754
Q ss_pred -CCCceEcCCCCEEEeCCeEEEEEEcCC-CCCCCeEEEECCCCCCCCCcEEEECcccccCCccCCC----CCCCCHHHHH
Q 023537 148 -SKADLHVEHGDKVSFGDLFLEVRATPG-HTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTD----FQGGSSSQLY 221 (281)
Q Consensus 148 -~~~~~~~~~g~~~~lg~~~i~~~~~pG-Ht~g~~~~~~~~~~~~~~~~vlftGD~~~~~~~~~~~----~~~~~~~~~~ 221 (281)
..++.++.+|+.+ +++ ++++..+| ||+|.+++++++ .+||+||++.....+... ..-.++.++.
T Consensus 92 p~~~D~~l~dge~i-~~g--~~vi~l~G~ktpGE~ALlled-------~vLi~GDl~~~~~~g~l~lLpd~k~~d~~~a~ 161 (199)
T PF14597_consen 92 PLACDRWLADGEEI-VPG--LWVIHLPGSKTPGELALLLED-------RVLITGDLLRSHPAGSLSLLPDEKLYDPTEAR 161 (199)
T ss_dssp SS--SEEE-TT-BS-STT--EEEEEE-SSSSTTEEEEEETT-------TEEEESSSEEBSSTTS-EE--GGG-S-HHHHH
T ss_pred CCCCccccccCCCc-cCc--eEEEEcCCCCCCceeEEEecc-------ceEEecceeeecCCCCeEECChHHcCCHHHHH
Confidence 4567899999854 455 78899999 999999999854 699999988665443322 2236899999
Q ss_pred HHHHHHHhcCC-CceEEEcCCCC
Q 023537 222 KSVHSQIFTLP-KDTLIYPAHDY 243 (281)
Q Consensus 222 ~sl~~~l~~l~-~~~~v~PgHG~ 243 (281)
+|++ ||..++ .+ .|++|||.
T Consensus 162 ~sl~-RLa~~~~fe-~lLvGdGw 182 (199)
T PF14597_consen 162 ASLR-RLAAYPDFE-WLLVGDGW 182 (199)
T ss_dssp HHHH-HHHT-TT---EEEESBB-
T ss_pred HHHH-HHhcccccc-EEeecCCc
Confidence 9995 999995 56 89999996
No 15
>PRK11539 ComEC family competence protein; Provisional
Probab=99.72 E-value=1.8e-16 Score=158.31 Aligned_cols=186 Identities=13% Similarity=0.090 Sum_probs=135.7
Q ss_pred EEeCCCccEEEEEEecCCCCCcEEEEeCCCC-----C-hHHHHHHHHHcCCceeEEEcCCCCCCCcCChHHHHhhCCCCe
Q 023537 66 TFEKESSTYTYLLADVNHPDKPALLIDPVDK-----T-VDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVK 139 (281)
Q Consensus 66 ~~~~~~~~~~yli~~~~~~~~~~ilID~G~~-----~-~~~l~~~l~~~~~~i~~Vv~TH~H~DH~gg~~~l~~~~p~~~ 139 (281)
+++.+.| .+.+|+. +++++|||+|.. . ...+...++..|.++|+|++||.|.||+||+..+.+.+|..+
T Consensus 505 ~lDVGqG-~a~li~~----~~~~lLiDtG~~~~~~~~~~~~i~P~L~~~Gi~lD~lilSH~d~DH~GGl~~Ll~~~~~~~ 579 (755)
T PRK11539 505 MLDVGHG-LAVVIER----NGKAILYDTGNAWPTGDSAQQVIIPWLRWHGLTPEGIILSHEHLDHRGGLASLLHAWPMAW 579 (755)
T ss_pred EEEccCc-eEEEEEE----CCEEEEEeCCCCCCCCcchHHHHHHHHHHcCCCcCEEEeCCCCcccCCCHHHHHHhCCcce
Confidence 3444444 4557777 688999999953 1 345778999999999999999999999999999999999888
Q ss_pred EEecccCCCCCceEcCCCCEEEeCCeEEEEEEcCCCC-----CCCeEEEECCCCCCCCCcEEEECcccccCCccCCCCCC
Q 023537 140 SIISKASGSKADLHVEHGDKVSFGDLFLEVRATPGHT-----LGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQG 214 (281)
Q Consensus 140 i~~~~~~~~~~~~~~~~g~~~~lg~~~i~~~~~pGHt-----~g~~~~~~~~~~~~~~~~vlftGD~~~~~~~~~~~~~~ 214 (281)
++.+.... .......|+.+++++.++++++.++|. ++|+++.++. .+.++||+||.- .
T Consensus 580 i~~~~~~~--~~~~~~~g~~~~~~~~~~~vL~P~~~~~~~~N~~S~Vl~i~~----~~~~~LltGDi~-----------~ 642 (755)
T PRK11539 580 IRSPLNWA--NHLPCVRGEQWQWQGLTFSVHWPLEQSNDAGNNDSCVIRVDD----GKHSILLTGDLE-----------A 642 (755)
T ss_pred eeccCccc--CcccccCCCeEeECCEEEEEEecCcccCCCCCCccEEEEEEE----CCEEEEEEeCCC-----------h
Confidence 88864322 123467899999999999999877654 5688888865 778899999932 1
Q ss_pred CCHHHHHHHHHHHH-hcCCCceEEEcCCCCCCC----------CcccHHHHHHhCCCCcCCHHHHHHHhcCCCC
Q 023537 215 GSSSQLYKSVHSQI-FTLPKDTLIYPAHDYKGF----------TVSTVGEEIQYNPRLTKDEVLVWLMLNSFIS 277 (281)
Q Consensus 215 ~~~~~~~~sl~~~l-~~l~~~~~v~PgHG~~~~----------~~~~~~~~~~~n~~l~~~~~~~~~~~~~~~~ 277 (281)
+. .+.+.++. ..++.+++++|+||.... |...+.....+|+|-+.+++..+++++.+.+
T Consensus 643 ---~~-E~~Ll~~~~~~l~~dvL~vpHHGS~tSss~~fl~~v~P~~aiiS~g~~NryghP~~~v~~rl~~~g~~ 712 (755)
T PRK11539 643 ---QA-EQKLLSRYWQQLAATLLQVPHHGSNTSSSLPFIRAVNGKVALASASRYNAWRLPSVKVKQRYQQQGYQ 712 (755)
T ss_pred ---HH-HHHHHhcCccCcCCCEEEeCCCCCCCCChHHHHHhcCCCEEEEeCCCCCCCCCCCHHHHHHHHHcCCe
Confidence 11 11121121 245678899999996531 2333344556899999999988888887754
No 16
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.67 E-value=8e-16 Score=144.53 Aligned_cols=128 Identities=16% Similarity=0.141 Sum_probs=101.0
Q ss_pred CCccEEEEEEecCCCCCcEEEEeCCCCChH-HH---------HHHHHHcCCceeEEEcCCCCCCCcCChHHHHhhCCCCe
Q 023537 70 ESSTYTYLLADVNHPDKPALLIDPVDKTVD-RD---------LNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVK 139 (281)
Q Consensus 70 ~~~~~~yli~~~~~~~~~~ilID~G~~~~~-~l---------~~~l~~~~~~i~~Vv~TH~H~DH~gg~~~l~~~~p~~~ 139 (281)
+.+.|||+|.. ++..+|||+|..... .+ .+.+++...++++||+||.|.||++|+..+...++.++
T Consensus 11 eiG~n~~ll~~----~~~~iliD~G~~~~~~~~~g~~~~iPd~~~l~~~~~~i~~I~iTH~H~DHiggl~~l~~~~~~~~ 86 (422)
T TIGR00649 11 EIGKNMYVVEI----DDDVFIFDAGILFPEDAMLGVDGVIPDFSYLQENQDKVKGIFITHGHEDHIGAVPYLFHTVGFPP 86 (422)
T ss_pred ccCCeEEEEEE----CCeEEEEeCCCCCCcccccCCccccCCHHHHHhccccCCEEEECCCChHHhCcHHHHHHhCCCCe
Confidence 45889999998 788999999963211 11 34566556689999999999999999999988775578
Q ss_pred EEecccCC--------------CCCceEcCCCCEEEeC-CeEEEEEEcCCCCCCCeEEEECCCCCCCCCcEEEECccccc
Q 023537 140 SIISKASG--------------SKADLHVEHGDKVSFG-DLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLI 204 (281)
Q Consensus 140 i~~~~~~~--------------~~~~~~~~~g~~~~lg-~~~i~~~~~pGHt~g~~~~~~~~~~~~~~~~vlftGD~~~~ 204 (281)
+|+++... ......+..++.+++| +.+++++.+++|++|+++|+++. ++.+++||||+.+.
T Consensus 87 Vy~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~v~~~~~~H~~p~s~g~~i~~----~~~~ivytGD~~~~ 162 (422)
T TIGR00649 87 IYGTPLTIALIKSKIKENKLNVRTDLLEIHEGEPIETGENHTIEFIRITHSIPDSVGFALHT----PLGYIVYTGDFKFD 162 (422)
T ss_pred EEeCHHHHHHHHHHHHhcCCCCCCceEEeCCCCEEEeCCceEEEEEECCCCCcceEEEEEEe----CCcEEEECCCcCCC
Confidence 99886421 1123567889999997 59999999998899999999975 56789999999764
Q ss_pred C
Q 023537 205 R 205 (281)
Q Consensus 205 ~ 205 (281)
.
T Consensus 163 ~ 163 (422)
T TIGR00649 163 N 163 (422)
T ss_pred C
Confidence 3
No 17
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=99.67 E-value=1.9e-15 Score=149.26 Aligned_cols=186 Identities=15% Similarity=0.129 Sum_probs=133.5
Q ss_pred CCCccEEEEEEecCCCCCcEEEEeCCCCC------hHHHHHHHHHcCCceeEEEcCCCCCCCcCChHHHHhhCCCCeEEe
Q 023537 69 KESSTYTYLLADVNHPDKPALLIDPVDKT------VDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSII 142 (281)
Q Consensus 69 ~~~~~~~yli~~~~~~~~~~ilID~G~~~------~~~l~~~l~~~~~~i~~Vv~TH~H~DH~gg~~~l~~~~p~~~i~~ 142 (281)
..++..+.+|+. +++++|||+|... ...+...+++.|.++|+|++||.|.||+||+..+.+.+|..+++.
T Consensus 446 DVGqGdaili~~----~~~~iLIDtG~~~~~~~~~~~~l~p~L~~~Gi~ID~lilTH~d~DHiGGl~~ll~~~~v~~i~~ 521 (662)
T TIGR00361 446 DVGQGLAMFIGA----NGKGILYDTGEPWREGSLGEKVIIPFLTAKGIKLEALILSHADQDHIGGAEIILKHHPVKRLVI 521 (662)
T ss_pred ecCCceEEEEEE----CCeEEEEeCCCCCCCCCccHHHHHHHHHHcCCCcCEEEECCCchhhhCcHHHHHHhCCccEEEe
Confidence 344445777777 5689999999531 234789999999889999999999999999999999998888887
Q ss_pred cccCC--CCCceEcCCCCEEEeCCeEEEEEEcC-----CCCCCCeEEEECCCCCCCCCcEEEECcccccCCccCCCCCCC
Q 023537 143 SKASG--SKADLHVEHGDKVSFGDLFLEVRATP-----GHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTDFQGG 215 (281)
Q Consensus 143 ~~~~~--~~~~~~~~~g~~~~lg~~~i~~~~~p-----GHt~g~~~~~~~~~~~~~~~~vlftGD~~~~~~~~~~~~~~~ 215 (281)
++... ......+..|+.+++++.++++++-+ .....++++.++. .+.++||+||+-.
T Consensus 522 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~vL~P~~~~~~~~N~~S~vl~i~~----~~~~~L~tGD~~~------------ 585 (662)
T TIGR00361 522 PKGFVEEGVAIEECKRGDVWQWQGLQFHVLSPEAPDPASKNNHSCVLWVDD----GGNSWLLTGDLEA------------ 585 (662)
T ss_pred ccchhhCCCceEecCCCCEEeECCEEEEEECCCCccCCCCCCCceEEEEEE----CCeeEEEecCCCH------------
Confidence 65421 12345678899999999999998643 1235578888765 7789999999621
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEcCCCCCCC----------CcccHHHHHHhCCCCcCCHHHHHHHhcCCCC
Q 023537 216 SSSQLYKSVHSQIFTLPKDTLIYPAHDYKGF----------TVSTVGEEIQYNPRLTKDEVLVWLMLNSFIS 277 (281)
Q Consensus 216 ~~~~~~~sl~~~l~~l~~~~~v~PgHG~~~~----------~~~~~~~~~~~n~~l~~~~~~~~~~~~~~~~ 277 (281)
..+ +.+.+....++.+++.+|+||.... |...+.....+|.|-+.+++..+++++.+.+
T Consensus 586 ~~E---~~l~~~~~~l~~dvLk~~HHGS~~Sss~~fl~~v~P~~aiiS~g~~N~yghP~~~vl~rl~~~g~~ 654 (662)
T TIGR00361 586 EGE---QEVMRVFPNIKADVLQVGHHGSKTSTSEELIQQVQPKVAIISAGRNNRWHHPHQKVLQRLQRHSIR 654 (662)
T ss_pred HHH---HHHHhcccCcCccEEEeCCCCCCCCChHHHHHhcCCCEEEEECCCCCCCCCChHHHHHHHHHCCCe
Confidence 111 1222223456678899999996531 2222233344688888998988988887764
No 18
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=99.58 E-value=7.6e-14 Score=123.73 Aligned_cols=185 Identities=18% Similarity=0.127 Sum_probs=133.6
Q ss_pred CCCccEEEEEEecCCCCCcEEEEeCCCC-ChHHHHHHHHHcCCc-eeEEEcCCCCCCCcCChHHHHhhCCCCeEEecccC
Q 023537 69 KESSTYTYLLADVNHPDKPALLIDPVDK-TVDRDLNVIKELGLK-LVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKAS 146 (281)
Q Consensus 69 ~~~~~~~yli~~~~~~~~~~ilID~G~~-~~~~l~~~l~~~~~~-i~~Vv~TH~H~DH~gg~~~l~~~~p~~~i~~~~~~ 146 (281)
..++..+.++.. ++..+++|+|.. ....++.+|++.|++ ||.+|+||.|.||+||+..+.+.++--++++....
T Consensus 50 DvGqg~a~li~~----~~~~~l~dtg~~~~~~~iip~Lk~~GV~~iD~lIlTH~d~DHiGg~~~vl~~~~v~~~~i~~~~ 125 (293)
T COG2333 50 DVGQGLATLIRS----EGKTILYDTGNSMGQDVIIPYLKSLGVRKLDQLILTHPDADHIGGLDEVLKTIKVPELWIYAGS 125 (293)
T ss_pred EcCCCeEEEEee----CCceEEeecCcccCceeehhhHhHcCCccccEEEeccCCccccCCHHHHHhhCCCCcEEEeCCC
Confidence 444455556666 566999999972 356788999999986 99999999999999999999996544455554433
Q ss_pred CC----------CCceEcCCCCEEEeCCeEEEEEEcCCC-----CCCCeEEEECCCCCCCCCcEEEECcccccCCccCCC
Q 023537 147 GS----------KADLHVEHGDKVSFGDLFLEVRATPGH-----TLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTD 211 (281)
Q Consensus 147 ~~----------~~~~~~~~g~~~~lg~~~i~~~~~pGH-----t~g~~~~~~~~~~~~~~~~vlftGD~~~~~~~~~~~ 211 (281)
.. ........|+.+.+++..++++.-++. ...+++++++. .+..+||+||+=
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~f~vl~P~~~~~~~~N~~S~Vl~v~~----g~~s~LlTGD~e--------- 192 (293)
T COG2333 126 DSTSTFVLRDAGIPVRSCKAGDSWQWGGVVFQVLSPVGGVSDDLNNDSCVLRVTF----GGNSFLLTGDLE--------- 192 (293)
T ss_pred CccchhhhhhcCCceeccccCceEEECCeEEEEEcCCccccccccCcceEEEEEe----CCeeEEEecCCC---------
Confidence 32 334567789999999999999875533 45688888876 788999999952
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCceEEEcCCCCCC----------CCcccHHHHHHhCCCCcCCHHHHHHHhcCCC
Q 023537 212 FQGGSSSQLYKSVHSQIFTLPKDTLIYPAHDYKG----------FTVSTVGEEIQYNPRLTKDEVLVWLMLNSFI 276 (281)
Q Consensus 212 ~~~~~~~~~~~sl~~~l~~l~~~~~v~PgHG~~~----------~~~~~~~~~~~~n~~l~~~~~~~~~~~~~~~ 276 (281)
. ..+ +.+.+....|..+++.+++||... .|...+...-++|.|-+...+..+++++.+.
T Consensus 193 --~--~~E--~~l~~~~~~l~~dVLkV~HHGS~tSss~~Fl~~v~Pk~AliS~G~~N~yghPh~~Vl~rl~~~~~ 261 (293)
T COG2333 193 --E--KGE--KLLKKYGPDLRADVLKVGHHGSKTSSSLAFLEAVKPKVALISSGRNNRYGHPHQEVLERLQKRGI 261 (293)
T ss_pred --c--hhH--HHHHhhCCCccceEEEeccCCccccCcHHHHHhcCCcEEEEEeeccCCCCCCcHHHHHHHHhcCC
Confidence 1 111 222234446777889999999753 1444455556678888888888877776654
No 19
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.45 E-value=6.4e-13 Score=116.38 Aligned_cols=120 Identities=17% Similarity=0.099 Sum_probs=88.3
Q ss_pred CCccEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCCceeEEEcCCCCCCCcCChHHHHhh-CCCCeEEecccCC-
Q 023537 70 ESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSK-VPGVKSIISKASG- 147 (281)
Q Consensus 70 ~~~~~~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~~i~~Vv~TH~H~DH~gg~~~l~~~-~p~~~i~~~~~~~- 147 (281)
.....+|+|.. ++..+|||+|... +.+.+ ...++++||+||.|.||++|+..+... .+...+++++...
T Consensus 34 ~r~~~s~li~~----~~~~iLiD~G~~~---~~~~~--~~~~i~~i~iTH~H~DHi~gl~~l~~~~~~~i~i~~~~~~~~ 104 (250)
T PRK11244 34 RRRPCSALIEF----NGARTLIDAGLPD---LAERF--PPGSLQQILLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDPEG 104 (250)
T ss_pred CcceeEEEEEE----CCCEEEEECCChH---HhhcC--CcccCCEEEEccCchhhhccHHHHHhhcCCceeEEeCCchhh
Confidence 44556888887 6789999999531 21111 134689999999999999999877432 2356788875421
Q ss_pred -------C---CCceEcCCCCEEEeCCeEEEEEEcCCCCCCCeEEEECCCCCCCCCcEEEECcccc
Q 023537 148 -------S---KADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALL 203 (281)
Q Consensus 148 -------~---~~~~~~~~g~~~~lg~~~i~~~~~pGHt~g~~~~~~~~~~~~~~~~vlftGD~~~ 203 (281)
. .....+.+++.+.+|+.+++.+.+ .|+.++++|+++. ++.+++|+||+.+
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~I~~~~~-~H~~~s~g~~i~~----~~~~i~ysgDt~~ 165 (250)
T PRK11244 105 CDDLFKHPGILDFSHPLEPFEPFDLGGLQVTPLPL-NHSKLTFGYLLET----AHSRVAYLTDTVG 165 (250)
T ss_pred HHHHhcCccccccccccCCCCCeeECCEEEEEEee-CCCcceeEEEEec----CCeEEEEEcCCCC
Confidence 0 111347788999999999999988 4998999999975 6789999999864
No 20
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.43 E-value=1.4e-12 Score=112.34 Aligned_cols=122 Identities=21% Similarity=0.266 Sum_probs=86.5
Q ss_pred ccEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCCceeEEEcCCCCCCCcCChHHHHhhCCCCeEEecccC-----
Q 023537 72 STYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKAS----- 146 (281)
Q Consensus 72 ~~~~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~~i~~Vv~TH~H~DH~gg~~~l~~~~p~~~i~~~~~~----- 146 (281)
++++|+|.. ++..+||||+....... .++....++++|++||.|.||++++..+..+ +++++++++..
T Consensus 7 G~s~~li~~----~~~~iLiDP~~~~~~~~--~~~~~~~~id~vliTH~H~DH~~~~~~~~~~-~~~~v~~~~~~~~~~~ 79 (228)
T PRK00685 7 GHSAFLIET----GGKKILIDPFITGNPLA--DLKPEDVKVDYILLTHGHGDHLGDTVEIAKR-TGATVIANAELANYLS 79 (228)
T ss_pred cceEEEEEE----CCEEEEECCCCCCCCCC--CCChhcCcccEEEeCCCCccccccHHHHHHh-CCCEEEEeHHHHHHHH
Confidence 467999998 78999999863100000 1111223799999999999999998887654 47888877532
Q ss_pred --CCCCceEcCCCCEEEeCCeEEEEEEcCCCCCC------------CeEEEECCCCCCCCCcEEEECcccccC
Q 023537 147 --GSKADLHVEHGDKVSFGDLFLEVRATPGHTLG------------CVTYVSGEGPDQPQPRMAFTGDALLIR 205 (281)
Q Consensus 147 --~~~~~~~~~~g~~~~lg~~~i~~~~~pGHt~g------------~~~~~~~~~~~~~~~~vlftGD~~~~~ 205 (281)
.......+..|+.+++++.+++++.+. |... .++|.++. ++.+++|+||+-+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~i~~~p~~-H~~~~~~~~~~~~~~~~~g~~i~~----~~~~i~~~GDt~~~~ 147 (228)
T PRK00685 80 EKGVEKTHPMNIGGTVEFDGGKVKLTPAL-HSSSFIDEDGITYLGNPTGFVITF----EGKTIYHAGDTGLFS 147 (228)
T ss_pred hcCCCceeeccCCCcEEECCEEEEEEEEE-cCCCCcCCCCcccCCCceEEEEEE----CCeEEEEecCccchh
Confidence 122335677889999999999987653 4433 47888875 567999999987543
No 21
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.41 E-value=3.6e-13 Score=131.49 Aligned_cols=129 Identities=19% Similarity=0.188 Sum_probs=91.1
Q ss_pred CCCccEEEEEEecCCCCCcEEEEeCCCCChH---HHHHHHHHcC---CceeEEEcCCCCCCCcCChHHHHhhCCCCeEEe
Q 023537 69 KESSTYTYLLADVNHPDKPALLIDPVDKTVD---RDLNVIKELG---LKLVYAMNTHVHADHVTGTGLIKSKVPGVKSII 142 (281)
Q Consensus 69 ~~~~~~~yli~~~~~~~~~~ilID~G~~~~~---~l~~~l~~~~---~~i~~Vv~TH~H~DH~gg~~~l~~~~p~~~i~~ 142 (281)
.+.+.+||+|.. ++..+|||||..... .....+...+ .++++||+||+|.||+|+++.+.+.....+||+
T Consensus 184 ~eVG~Sc~Ll~~----~~~~ILIDcG~~~~~~~~~~~p~l~~~~~~~~~IDaVlITHaH~DHiG~LP~L~k~g~~gpIY~ 259 (630)
T TIGR03675 184 REVGRSALLLST----PESRILLDCGVNVGANGDNAYPYLDVPEFQLDELDAVVITHAHLDHSGLVPLLFKYGYDGPVYC 259 (630)
T ss_pred CccCCCEEEEEE----CCCEEEEECCCCccccchhhcccccccCCCHHHCcEEEECCCCHHHHhhHHHHHHhCCCCceee
Confidence 445668999998 688999999964321 1112222121 258999999999999999999987544678998
Q ss_pred cccC------------------CC-------------CCceEcCCCCEEEeC-CeEEEEEEcCCCCCCCeEEEECCCCCC
Q 023537 143 SKAS------------------GS-------------KADLHVEHGDKVSFG-DLFLEVRATPGHTLGCVTYVSGEGPDQ 190 (281)
Q Consensus 143 ~~~~------------------~~-------------~~~~~~~~g~~~~lg-~~~i~~~~~pGHt~g~~~~~~~~~~~~ 190 (281)
++.. .. .....+..++.+.++ +.+++++++ ||++|+.++.+... +
T Consensus 260 T~pT~~l~~~ll~D~~~i~~~~g~~~~y~~~dv~~~~~~~~~l~yg~~~~i~~~i~vt~~~A-GHilGsa~~~~~i~--d 336 (630)
T TIGR03675 260 TPPTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTDIAPDIKLTFYNA-GHILGSAIAHLHIG--D 336 (630)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccEEeCCCCeEEecCCEEEEEecC-ccccCceEEEEEEC--C
Confidence 7531 00 112456778888884 788887766 99999988876542 1
Q ss_pred CCCcEEEECccccc
Q 023537 191 PQPRMAFTGDALLI 204 (281)
Q Consensus 191 ~~~~vlftGD~~~~ 204 (281)
...+++|+||.-+.
T Consensus 337 g~~~IvYTGD~~~~ 350 (630)
T TIGR03675 337 GLYNIVYTGDFKYE 350 (630)
T ss_pred CCEEEEEeCCCCCC
Confidence 34689999997654
No 22
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.40 E-value=2.9e-12 Score=111.41 Aligned_cols=119 Identities=17% Similarity=0.082 Sum_probs=86.2
Q ss_pred CccEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCCceeEEEcCCCCCCCcCChHHHHhhC-CCCeEEecccCC--
Q 023537 71 SSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKV-PGVKSIISKASG-- 147 (281)
Q Consensus 71 ~~~~~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~~i~~Vv~TH~H~DH~gg~~~l~~~~-p~~~i~~~~~~~-- 147 (281)
....+++|.. ++..+|||+|... +.+.+ ...++++||+||.|+||++|+..+.... ....+|+++...
T Consensus 25 r~~~s~~i~~----~~~~iliD~G~~~---~~~~~--~~~~id~i~iTH~H~DHi~gl~~l~~~~~~~~~v~~~~~~~~~ 95 (238)
T TIGR03307 25 RQPCSAVIEF----NGARTLIDAGLTD---LAERF--PPGSLQAILLTHYHMDHVQGLFPLRWGVGEPIPVYGPPDEEGC 95 (238)
T ss_pred CcceEEEEEE----CCcEEEEECCChh---Hhhcc--CccCCCEEEEecCchhhhcchHHHHHhcCCceeEEeCchHhhH
Confidence 3445778877 6789999999532 21111 1236899999999999999997775432 357788875421
Q ss_pred ------C---CCceEcCCCCEEEeCCeEEEEEEcCCCCCCCeEEEECCCCCCCCCcEEEECcccc
Q 023537 148 ------S---KADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALL 203 (281)
Q Consensus 148 ------~---~~~~~~~~g~~~~lg~~~i~~~~~pGHt~g~~~~~~~~~~~~~~~~vlftGD~~~ 203 (281)
. .....+..++.+.+++.+|+.+.+ .|+.++++|.++. ++.+++|+||+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~H~~~~~g~~i~~----~~~~i~y~gDt~~ 155 (238)
T TIGR03307 96 DDLFKHPGILDFSKPLEAFEPFDLGGLRVTPLPL-VHSKLTFGYLLET----DGQRVAYLTDTAG 155 (238)
T ss_pred HHHhcCcccccccccccCCceEEECCEEEEEEec-CCCCcceEEEEec----CCcEEEEEecCCC
Confidence 0 011236678899999999999888 4888899999975 7789999999853
No 23
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.39 E-value=7.4e-12 Score=119.68 Aligned_cols=130 Identities=18% Similarity=0.204 Sum_probs=104.2
Q ss_pred CCCccEEEEEEecCCCCCcEEEEeCCCCChHH----------HHHHHHHcCCceeEEEcCCCCCCCcCChHHHHhhCCCC
Q 023537 69 KESSTYTYLLADVNHPDKPALLIDPVDKTVDR----------DLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGV 138 (281)
Q Consensus 69 ~~~~~~~yli~~~~~~~~~~ilID~G~~~~~~----------l~~~l~~~~~~i~~Vv~TH~H~DH~gg~~~l~~~~p~~ 138 (281)
.+.+.|+|++.. +++.+++|+|....+. -..++.+...++++||+||+|.||+|+++++..+.+.+
T Consensus 18 ~EiGkN~~vve~----~~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~n~~kvkgI~lTHgHeDHIGaip~ll~~~~~~ 93 (555)
T COG0595 18 GEIGKNMYVVEY----GDDIIILDAGLKFPEDDLLGVDLIIPDFSYLEENKDKVKGIFLTHGHEDHIGALPYLLKQVLFA 93 (555)
T ss_pred hhhccceEEEEE----CCcEEEEECccccCccccccccEEecChHHhhhccccceEEEecCCchhhccchHHHHhcCCcC
Confidence 456689999998 7899999999422111 22456666668999999999999999999999987669
Q ss_pred eEEecccCC---------------CCCceEcCCCCEEEeCCeEEEEEEcCCCCCCCeEEEECCCCCCCCCcEEEECcccc
Q 023537 139 KSIISKASG---------------SKADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALL 203 (281)
Q Consensus 139 ~i~~~~~~~---------------~~~~~~~~~g~~~~lg~~~i~~~~~pGHt~g~~~~~~~~~~~~~~~~vlftGD~~~ 203 (281)
++|+++... ......+..++.+++++.+++++.+-+-.||++++.+.+ +...+++|||.-+
T Consensus 94 piy~s~lt~~Li~~k~~~~~~~~~~~~~~ev~~~~~i~~~~~~v~f~~vtHSIPds~g~~i~T----p~G~Iv~TGDFk~ 169 (555)
T COG0595 94 PIYASPLTAALIKEKLKEHGLFKNENELHEVKPGSEIKFGSFEVEFFPVTHSIPDSLGIVIKT----PEGNIVYTGDFKF 169 (555)
T ss_pred ceecCHhhHHHHHHHHHHhccccccCceEEeCCCCeEEeCcEEEEEEeecccCccceEEEEEC----CCccEEEeCCEEe
Confidence 999886421 123467889999999999999999976678899999987 7889999999876
Q ss_pred cCC
Q 023537 204 IRG 206 (281)
Q Consensus 204 ~~~ 206 (281)
...
T Consensus 170 d~~ 172 (555)
T COG0595 170 DPT 172 (555)
T ss_pred cCC
Confidence 553
No 24
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=99.34 E-value=4.8e-11 Score=102.41 Aligned_cols=71 Identities=21% Similarity=0.326 Sum_probs=60.0
Q ss_pred CccEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCCc---eeEEEcCCCCCCCcCChHHHHhhC-CCCeEEecccC
Q 023537 71 SSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLK---LVYAMNTHVHADHVTGTGLIKSKV-PGVKSIISKAS 146 (281)
Q Consensus 71 ~~~~~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~~---i~~Vv~TH~H~DH~gg~~~l~~~~-p~~~i~~~~~~ 146 (281)
....++||++ .+..||+|||.. ...++..++.+|.+ +++||+||.|+||+||+..+.+.. |+.++|+++..
T Consensus 20 ~hGfS~LVE~----~~~riLFDtG~~-~~~ll~Na~~lgvd~~did~vvlSHgH~DH~GGL~~~~~~~~~~i~v~ahp~a 94 (259)
T COG1237 20 EHGFSALVED----EGTRILFDTGTD-SDVLLHNARLLGVDLRDIDAVVLSHGHYDHTGGLPYLLEENNPGIPVYAHPDA 94 (259)
T ss_pred cCceEEEEEc----CCeEEEEeCCCC-cHHHHHHHHHcCCCcccCcEEEEeCCCccccCchHhHHhccCCCceEEeChHH
Confidence 3456889998 788999999953 77888999998875 799999999999999999997754 89999998753
No 25
>PRK04286 hypothetical protein; Provisional
Probab=99.32 E-value=1.5e-11 Score=110.37 Aligned_cols=125 Identities=18% Similarity=0.188 Sum_probs=78.7
Q ss_pred CCccEEEEEEecCCCCCcEEEEeCCCCC-------------hHHHHHHHHHc---CCceeEEEcCCCCCCCcCChHHHH-
Q 023537 70 ESSTYTYLLADVNHPDKPALLIDPVDKT-------------VDRDLNVIKEL---GLKLVYAMNTHVHADHVTGTGLIK- 132 (281)
Q Consensus 70 ~~~~~~yli~~~~~~~~~~ilID~G~~~-------------~~~l~~~l~~~---~~~i~~Vv~TH~H~DH~gg~~~l~- 132 (281)
+..+||++|.. ++..||||+|... ...+.+.+... -.++++||+||.|+||++|+..+.
T Consensus 12 g~~~~~~~I~~----~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~id~IliTH~H~DHi~g~~~~~y 87 (298)
T PRK04286 12 GVRSMATFVET----KDVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILEYAKKADVITISHYHYDHHTPFYEDPY 87 (298)
T ss_pred CceeeEEEEEE----CCeEEEEcCCCCcCccccCCCCcchhHHHHHHHHHHhhcccccCCEEEecCCccccCCCcccccc
Confidence 44468999998 7899999999421 02233333332 336899999999999999887651
Q ss_pred ---------hhCCCCeEEec-ccC-----------C-------CCCceEcCCCCEEEeCCeEEEEEEcCCCCCC--CeEE
Q 023537 133 ---------SKVPGVKSIIS-KAS-----------G-------SKADLHVEHGDKVSFGDLFLEVRATPGHTLG--CVTY 182 (281)
Q Consensus 133 ---------~~~p~~~i~~~-~~~-----------~-------~~~~~~~~~g~~~~lg~~~i~~~~~pGHt~g--~~~~ 182 (281)
..+....++.. ... . ......+..++.+.+|+.++++...-.|... .++|
T Consensus 88 ~~~~~~~~i~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~~ig~~~V~~~~~v~H~~~~~~~Gy 167 (298)
T PRK04286 88 ELSDEEIPKEIYKGKIVLIKDPTENINWSQRRRAPRFLKAVKDIAKKIEYADGKTFRFGGTTIEFSPPVPHGADGSKLGY 167 (298)
T ss_pred ccccccchHHHhcCceecccCHHHHcCHHHHhhHHhHHHHHHhcCCceEECCCCEEEECCEEEEEeccCCCCCCCCccce
Confidence 11222233321 000 0 0022456778999999999997643357532 4443
Q ss_pred ----EECCCCCCCCCcEEEECccc
Q 023537 183 ----VSGEGPDQPQPRMAFTGDAL 202 (281)
Q Consensus 183 ----~~~~~~~~~~~~vlftGD~~ 202 (281)
.++. ++.+++|+||+-
T Consensus 168 ~i~~ri~~----gg~~~~~~gDt~ 187 (298)
T PRK04286 168 VIMVRISD----GDESFVFASDVQ 187 (298)
T ss_pred EEEEEEEe----CCEEEEEECCCC
Confidence 3433 677999999997
No 26
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=99.28 E-value=5.5e-11 Score=107.07 Aligned_cols=113 Identities=17% Similarity=0.169 Sum_probs=78.5
Q ss_pred CCCccEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCC---ceeEEEcCCCCCCCcCChHHHHhh--C----CCCe
Q 023537 69 KESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGL---KLVYAMNTHVHADHVTGTGLIKSK--V----PGVK 139 (281)
Q Consensus 69 ~~~~~~~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~---~i~~Vv~TH~H~DH~gg~~~l~~~--~----p~~~ 139 (281)
...++++|+|...++..+..+|||+|.+. ...+.+.+. ++++||+||.|+||++|+..|... + ....
T Consensus 13 ~~r~~s~~lv~~~~~~~~~~iLiD~G~g~----~~~l~~~~i~~~~id~IfiTH~H~DHi~Gl~~ll~~~~~~~~~~~l~ 88 (303)
T TIGR02649 13 RTRNVTAILLNLQHPTQSGLWLFDCGEGT----QHQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLT 88 (303)
T ss_pred CCCCccEEEEEccCCCCCCEEEEECCccH----HHHHHHhCCCHHHCcEEEEeCCChhhcCCHHHHHHHHHhcCCCCCeE
Confidence 56677899998531112478999999763 233434443 589999999999999999987532 1 2367
Q ss_pred EEecccCC-------------C--C-CceEcCCCCEEEeCCeEEEEEEcCCCCCCCeEEEECC
Q 023537 140 SIISKASG-------------S--K-ADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGE 186 (281)
Q Consensus 140 i~~~~~~~-------------~--~-~~~~~~~g~~~~lg~~~i~~~~~pGHt~g~~~~~~~~ 186 (281)
||+++... . . ....+..++.+..++.+++.+.+. |+..+++|.++.
T Consensus 89 Iygp~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~-H~~~~~gy~i~~ 150 (303)
T TIGR02649 89 IYGPQGIREFVETALRISGSWTDYPLEIVEIGAGEILDDGLRKVTAYPLE-HPLECYGYRIEE 150 (303)
T ss_pred EEechhHHHHHHHHHHhcccccCCceEEEEcCCCceEecCCeEEEEEEcc-CccceEEEEEec
Confidence 88876421 0 0 113455677888888888888885 888899999975
No 27
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=99.28 E-value=4e-11 Score=107.56 Aligned_cols=108 Identities=18% Similarity=0.152 Sum_probs=78.0
Q ss_pred CCccEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCC---ceeEEEcCCCCCCCcCChHHHHhhC------CCCeE
Q 023537 70 ESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGL---KLVYAMNTHVHADHVTGTGLIKSKV------PGVKS 140 (281)
Q Consensus 70 ~~~~~~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~---~i~~Vv~TH~H~DH~gg~~~l~~~~------p~~~i 140 (281)
...++|++|.. ++..+|||+|.. ....+.+.+. ++++||+||.|+||++|+..+.... ....|
T Consensus 15 ~r~~~~~~v~~----~~~~iLiD~G~g----~~~~l~~~~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~~~~~~~i~I 86 (299)
T TIGR02651 15 ERNLPSIALKL----NGELWLFDCGEG----TQRQMLRSGISPMKIDRIFITHLHGDHILGLPGLLSTMSFQGRKEPLTI 86 (299)
T ss_pred CCCCceEEEEE----CCeEEEEECCHH----HHHHHHHcCCCHHHCcEEEEECCchhhhcChHHHHHhhccCCCCceEEE
Confidence 35677899988 678999999964 2334444443 4799999999999999999886431 23567
Q ss_pred EecccCC-----------C----C-CceEcCCCC-EEEeCCeEEEEEEcCCCCCCCeEEEECC
Q 023537 141 IISKASG-----------S----K-ADLHVEHGD-KVSFGDLFLEVRATPGHTLGCVTYVSGE 186 (281)
Q Consensus 141 ~~~~~~~-----------~----~-~~~~~~~g~-~~~lg~~~i~~~~~pGHt~g~~~~~~~~ 186 (281)
|+++... . . ....+.+++ .+.+++.+++.+.+. |+..+++|.++.
T Consensus 87 y~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-H~~~~~gy~i~~ 148 (299)
T TIGR02651 87 YGPPGIKEFIETSLRVSYTYLNYPIKIHEIEEGGLVFEDDGFKVEAFPLD-HSIPSLGYRFEE 148 (299)
T ss_pred ECCccHHHHHHHHHHHcccCCCceEEEEEccCCCceEecCCEEEEEEEcC-CCCceEEEEEEE
Confidence 7775421 0 0 113456776 588999999999886 888899999875
No 28
>PRK02126 ribonuclease Z; Provisional
Probab=99.27 E-value=2.8e-11 Score=110.13 Aligned_cols=114 Identities=13% Similarity=0.117 Sum_probs=80.2
Q ss_pred EEEeCCCccEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCCceeEEEcCCCCCCCcCChHHHHhhC----CCCeE
Q 023537 65 QTFEKESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKV----PGVKS 140 (281)
Q Consensus 65 ~~~~~~~~~~~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~~i~~Vv~TH~H~DH~gg~~~l~~~~----p~~~i 140 (281)
.+..+...+|+|+|.... ++..+|||||. +.+.++....++++||+||.|+||++|+..|.... +.+++
T Consensus 8 ~~~~g~~~dn~~~l~~~~--~~~~iLiD~G~-----~~~l~~~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~~~r~~~l~i 80 (334)
T PRK02126 8 RLVNGPFDDPGLYVDFLF--ERRALLFDLGD-----LHHLPPRELLRISHIFVSHTHMDHFIGFDRLLRHCLGRPRRLRL 80 (334)
T ss_pred EEecCCCCCcEEEEEECC--CCeEEEEcCCC-----HHHHhhcCCCccCEEEEcCCChhHhCcHHHHHHHhccCCCCeEE
Confidence 366677888999998742 57899999996 22323333357999999999999999999997654 34677
Q ss_pred EecccCC---------C--------CCc-----eE--------------------------cCCCCEEEeCCeEEEEEEc
Q 023537 141 IISKASG---------S--------KAD-----LH--------------------------VEHGDKVSFGDLFLEVRAT 172 (281)
Q Consensus 141 ~~~~~~~---------~--------~~~-----~~--------------------------~~~g~~~~lg~~~i~~~~~ 172 (281)
|+++... . .+. .. ..++..+..++.+|+++.+
T Consensus 81 ygp~~~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~a~~~ 160 (334)
T PRK02126 81 FGPPGFADQVEHKLAGYTWNLVENYPTTFRVHEVELHDGRIRRALFSCRRAFAREAEEELSLPDGVLLDEPWFRVRAAFL 160 (334)
T ss_pred EECHHHHHHHHHHhccccccCcccCCCceEEEEEEccCccceeeeecccccccccccccccCCCCeEEeCCCEEEEEEEc
Confidence 7765311 0 000 00 1134446678889999998
Q ss_pred CCCCCCCeEEEECC
Q 023537 173 PGHTLGCVTYVSGE 186 (281)
Q Consensus 173 pGHt~g~~~~~~~~ 186 (281)
. |+..+++|.++.
T Consensus 161 ~-H~vp~~gy~~~e 173 (334)
T PRK02126 161 D-HGIPCLAFALEE 173 (334)
T ss_pred c-CCCceeEEEEEe
Confidence 6 988999999974
No 29
>PRK02113 putative hydrolase; Provisional
Probab=99.24 E-value=5e-11 Score=104.42 Aligned_cols=117 Identities=20% Similarity=0.139 Sum_probs=83.0
Q ss_pred CCccEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcC-CceeEEEcCCCCCCCcCChHHHHhh--CCCCeEEecccC
Q 023537 70 ESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELG-LKLVYAMNTHVHADHVTGTGLIKSK--VPGVKSIISKAS 146 (281)
Q Consensus 70 ~~~~~~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~-~~i~~Vv~TH~H~DH~gg~~~l~~~--~p~~~i~~~~~~ 146 (281)
.....+|+|.. ++..+|||+|.....++.+ .+ .++++|++||.|+||++|+..+... ....+||+++..
T Consensus 32 ~R~~~s~li~~----~~~~iLiD~G~g~~~~l~~----~~~~~id~I~lTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~ 103 (252)
T PRK02113 32 NRLRTSALVET----EGARILIDCGPDFREQMLR----LPFGKIDAVLITHEHYDHVGGLDDLRPFCRFGEVPIYAEQYV 103 (252)
T ss_pred cceeeEEEEEE----CCeEEEEECCchHHHHHHh----cCccccCEEEECCCChhhhCCHHHHHHhccCCCceEEECHHH
Confidence 34456889987 6789999999753332222 23 3689999999999999999877532 235678877531
Q ss_pred C---------------C-----CCceEcCCCCEEEeCCeEEEEEEcCCCC-CCCeEEEECCCCCCCCCcEEEECcccc
Q 023537 147 G---------------S-----KADLHVEHGDKVSFGDLFLEVRATPGHT-LGCVTYVSGEGPDQPQPRMAFTGDALL 203 (281)
Q Consensus 147 ~---------------~-----~~~~~~~~g~~~~lg~~~i~~~~~pGHt-~g~~~~~~~~~~~~~~~~vlftGD~~~ 203 (281)
. . .....+..|+.+++++.+++.+.+. |+ ...++|.+ .+++|+||+-.
T Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~-H~~~~~~gy~i--------~~i~y~~Dt~~ 172 (252)
T PRK02113 104 AERLRSRMPYCFVEHSYPGVPNIPLREIEPDRPFLVNHTEVTPLRVM-HGKLPILGYRI--------GKMAYITDMLT 172 (252)
T ss_pred HHHHHhhCCeeeccCCCCCCcceeeEEcCCCCCEEECCeEEEEEEec-CCCccEEEEEe--------CCEEEccCCCC
Confidence 0 0 0124566788999999999999886 65 35778887 26899999853
No 30
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=99.23 E-value=3.6e-11 Score=108.02 Aligned_cols=122 Identities=13% Similarity=0.156 Sum_probs=84.4
Q ss_pred ccEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHc----C---CceeEEEcCCCCCCCcCChHHHHhhCCCCeEEecc
Q 023537 72 STYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKEL----G---LKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISK 144 (281)
Q Consensus 72 ~~~~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~----~---~~i~~Vv~TH~H~DH~gg~~~l~~~~p~~~i~~~~ 144 (281)
...+++|... ++..||||+|.. ....+..+++. | .+|++||+||.|.||+.|+..|++.. ..+||+++
T Consensus 37 ~rss~ll~~~---g~~~iLID~Gpd-~r~ql~~~~~~~~~~gl~~~~IdaI~lTH~H~DHi~GL~~L~~~~-~lpVya~~ 111 (302)
T TIGR02108 37 TQSSIAVSAD---GERWVLLNASPD-IRQQIQATPALHPQRGLRHTPIAGVVLTDGEIDHTTGLLTLREGQ-PFTLYATE 111 (302)
T ss_pred cccEEEEEeC---CCEEEEEECCHH-HHHHHHhCcccccccCCCcccCCEEEEeCCCcchhhCHHHHcCCC-CceEEECH
Confidence 3457788652 456899999965 33333333322 2 25899999999999999999998664 78899986
Q ss_pred cCCCC--------------C-ceEcCCCCEEEeC-----CeEEEEEEcCC-------C------CCCCeEEEECCCCCCC
Q 023537 145 ASGSK--------------A-DLHVEHGDKVSFG-----DLFLEVRATPG-------H------TLGCVTYVSGEGPDQP 191 (281)
Q Consensus 145 ~~~~~--------------~-~~~~~~g~~~~lg-----~~~i~~~~~pG-------H------t~g~~~~~~~~~~~~~ 191 (281)
..... . ...+..++.+.++ +.+|+.+.+++ | ..+.++|+++. +
T Consensus 112 ~t~~~L~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~I~~f~v~h~~~~~~~H~~~d~~~~~~~Gy~i~~----~ 187 (302)
T TIGR02108 112 MVLQDLSDNPIFNVLDHWNVRRQPIALNEKFEFRIVARPGLEFTPFAVPGKAPLYSEHRAGDPHPGDTLGLKIED----G 187 (302)
T ss_pred HHHHHHHhCCCccccchhhccceEecCCCcEEecccccCCEEEEEEEcCCCCCccccccccCCCCCCcEEEEEEe----C
Confidence 53110 0 1345566777664 48888899871 3 24688999975 4
Q ss_pred --CCcEEEECccc
Q 023537 192 --QPRMAFTGDAL 202 (281)
Q Consensus 192 --~~~vlftGD~~ 202 (281)
+++++|++|+-
T Consensus 188 ~~g~~~~y~tD~g 200 (302)
T TIGR02108 188 TTGKRLFYIPGCA 200 (302)
T ss_pred CCCcEEEEECCCC
Confidence 78899999973
No 31
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.22 E-value=4.1e-11 Score=107.80 Aligned_cols=126 Identities=9% Similarity=0.028 Sum_probs=84.5
Q ss_pred CCccEEEEEEecCCCCCcEEEEeCCCCChHHHHHHH--HH-cC---CceeEEEcCCCCCCCcCChHHHHhhCCCCeEEec
Q 023537 70 ESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVI--KE-LG---LKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIIS 143 (281)
Q Consensus 70 ~~~~~~yli~~~~~~~~~~ilID~G~~~~~~l~~~l--~~-~~---~~i~~Vv~TH~H~DH~gg~~~l~~~~p~~~i~~~ 143 (281)
.....+|+|... ++..||||+|.....++.+.. .. .| .++++||+||.|+||+.|+..|+... ..+||++
T Consensus 36 ~R~~ss~li~~~---g~~~iLiD~G~g~~~ql~~~~~~~~~~g~~~~~ldav~lTH~H~DHi~Gl~~l~~~~-~l~Vyg~ 111 (302)
T PRK05184 36 PRTQSSIAVSAD---GEDWVLLNASPDIRQQIQATPALQPARGLRDTPIAAVVLTDGQIDHTTGLLTLREGQ-PFPVYAT 111 (302)
T ss_pred cccccEEEEEcC---CCEEEEEECChhHHHHHHhchhcCccccCCcccccEEEEeCCchhhhhChHhhccCC-CeEEEeC
Confidence 444568888762 234699999976444433321 00 12 25899999999999999999996543 6778887
Q ss_pred ccCC-----C------C------CceEcCCCCEEEeC---CeEEEEEEcC------------CCCCCCeEEEECCCCCCC
Q 023537 144 KASG-----S------K------ADLHVEHGDKVSFG---DLFLEVRATP------------GHTLGCVTYVSGEGPDQP 191 (281)
Q Consensus 144 ~~~~-----~------~------~~~~~~~g~~~~lg---~~~i~~~~~p------------GHt~g~~~~~~~~~~~~~ 191 (281)
+... . . ....+..++.++++ +.+|+.+.++ -|...+++|+++.. .+
T Consensus 112 ~~~~~~l~~~~~~f~~~~~~~~~~~~~i~~~~~~~i~~~~~~~Vt~~~v~H~~~~~~~~~~~~h~~~~~gyri~~~--~~ 189 (302)
T PRK05184 112 PAVLEDLSTGFPIFNVLDHYGGVQRRPIALDGPFAVPGLPGLRFTAFPVPSKAPPYSPHRSDPEPGDNIGLRIEDR--AT 189 (302)
T ss_pred HHHHHHHHhcCCcccccccccceeeEEecCCCceEecCCCCcEEEEEEcCCCCCcccccccCCCCCCeEEEEEEec--CC
Confidence 5311 0 0 11356667788886 7899998885 14567899999510 15
Q ss_pred CCcEEEECcc
Q 023537 192 QPRMAFTGDA 201 (281)
Q Consensus 192 ~~~vlftGD~ 201 (281)
+++++|++|+
T Consensus 190 g~~~~y~tD~ 199 (302)
T PRK05184 190 GKRLFYAPGL 199 (302)
T ss_pred CcEEEEECCC
Confidence 6779999775
No 32
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=3.9e-11 Score=112.66 Aligned_cols=125 Identities=18% Similarity=0.195 Sum_probs=91.6
Q ss_pred CCCccEEEEEEecCCCCCcEEEEeCCCCChHHH--HHHHHHcCCceeEEEcCCCCCCCcCChHHHHhhCCCCeEEecccC
Q 023537 69 KESSTYTYLLADVNHPDKPALLIDPVDKTVDRD--LNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKAS 146 (281)
Q Consensus 69 ~~~~~~~yli~~~~~~~~~~ilID~G~~~~~~l--~~~l~~~~~~i~~Vv~TH~H~DH~gg~~~l~~~~p~~~i~~~~~~ 146 (281)
.+.+..|.+|.. ++..+++|+|....... ........ ++|+|++||+|.||+|+++.+....-..++|+...+
T Consensus 10 ~evg~s~~~l~~----~~~~il~D~G~~~~~~~~~~p~~~~~~-~vDavllTHaHlDH~g~lp~l~~~~~~~~v~aT~~T 84 (427)
T COG1236 10 REVGRSCVLLET----GGTRILLDCGLFPGDPSPERPLLPPFP-KVDAVLLTHAHLDHIGALPYLVRNGFEGPVYATPPT 84 (427)
T ss_pred CCcCcEEEEEEE----CCceEEEECCCCcCcCCccCCCCCCCC-CcCEEEeccCchhhhcccHHHHHhccCCceeeccCH
Confidence 456778999988 67899999996432221 11111111 579999999999999999999875324677776532
Q ss_pred C-------------C-----------------CCceEcCCCCEEEeCCeEEEEEEcCCCCCCCeEEEECCCCCCCCCcEE
Q 023537 147 G-------------S-----------------KADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMA 196 (281)
Q Consensus 147 ~-------------~-----------------~~~~~~~~g~~~~lg~~~i~~~~~pGHt~g~~~~~~~~~~~~~~~~vl 196 (281)
. . ...+.+.-|+.+.+++.+++++++ ||.+|+..+.++. .+..++
T Consensus 85 ~~l~~~~l~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~~~~v~~~~A-GHilGsa~~~le~----~~~~il 159 (427)
T COG1236 85 AALLKVLLGDSLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPVEVGGVKVTFYNA-GHILGSAAILLEV----DGGRIL 159 (427)
T ss_pred HHHHHHHHHHHHhhhcCCCCCCCchhHHHhhHhhEEEecCCCceEeeeEEEEEecC-CCccceeEEEEEe----CCceEE
Confidence 1 0 112458889999999988888877 9999999999986 566799
Q ss_pred EECcccc
Q 023537 197 FTGDALL 203 (281)
Q Consensus 197 ftGD~~~ 203 (281)
||||.-.
T Consensus 160 ytGD~~~ 166 (427)
T COG1236 160 YTGDVKR 166 (427)
T ss_pred EEeccCC
Confidence 9999753
No 33
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.15 E-value=2.3e-11 Score=101.71 Aligned_cols=110 Identities=19% Similarity=0.198 Sum_probs=76.2
Q ss_pred EEEEeCCCCChH-HHHHHHHHcCC---ceeEEEcCCCCCCCcCChHHHHhh---CCCCeEEecccCCC------------
Q 023537 88 ALLIDPVDKTVD-RDLNVIKELGL---KLVYAMNTHVHADHVTGTGLIKSK---VPGVKSIISKASGS------------ 148 (281)
Q Consensus 88 ~ilID~G~~~~~-~l~~~l~~~~~---~i~~Vv~TH~H~DH~gg~~~l~~~---~p~~~i~~~~~~~~------------ 148 (281)
.+|||||..... .+.+.+..... ++++|++||.|.||+.|+..+... .++ ++++++....
T Consensus 2 ~iLiD~g~~~~~~~~~~~~~~~~~~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~-~i~~~~~~~~~l~~~~~~~~~~ 80 (194)
T PF12706_consen 2 RILIDCGPGTRSLRLRQQIMQELEDLPDIDAVFITHSHPDHIAGLPSLIPAWAKHPK-PIYGPPETKEFLREYKFGILDL 80 (194)
T ss_dssp EEEESE-TTHHHHTHCHHHTCSSSSSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCTT-EEEECHHHHHHHHHHHHTHHTT
T ss_pred EEEEeCCCCcccccccccccccccccCCCCEEEECCCCccccCChHHHHHHhhcccc-eEEecHHHHHHHHhhhcccccc
Confidence 699999975320 12222222111 789999999999999997666543 334 8888763211
Q ss_pred ------CCceEcCCCCEEEeCCeEEEEEEcCCCCCCCeE----EEECCCCCCCCCcEEEECcccc
Q 023537 149 ------KADLHVEHGDKVSFGDLFLEVRATPGHTLGCVT----YVSGEGPDQPQPRMAFTGDALL 203 (281)
Q Consensus 149 ------~~~~~~~~g~~~~lg~~~i~~~~~pGHt~g~~~----~~~~~~~~~~~~~vlftGD~~~ 203 (281)
.....+..++.+++++.+++++.+. |..+..+ |+++. ++.+++|+||+-+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-H~~~~~~~~~g~~i~~----~~~~i~~~gD~~~ 140 (194)
T PF12706_consen 81 YPEEDNFDIIEISPGDEFEIGDFRITPFPAN-HGPPSYGGNKGFVIEP----DGKKIFYSGDTNY 140 (194)
T ss_dssp CCTTSGEEEEEECTTEEEEETTEEEEEEEEE-SSSCCEEECCEEEEEE----TTEEEEEETSSSS
T ss_pred cccccceeEEEeccCceEEeceEEEEEEecc-ccccccccCceEEEec----CCcceEEeeccch
Confidence 1124566788999999999999884 8888877 88875 7889999999875
No 34
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=99.06 E-value=3.5e-10 Score=104.44 Aligned_cols=128 Identities=18% Similarity=0.170 Sum_probs=90.7
Q ss_pred CCccEEEEEEecCCCCCcEEEEeCCCCChH---HHHHHH---HHcCCceeEEEcCCCCCCCcCChHHHHhhCCCCeEEec
Q 023537 70 ESSTYTYLLADVNHPDKPALLIDPVDKTVD---RDLNVI---KELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIIS 143 (281)
Q Consensus 70 ~~~~~~yli~~~~~~~~~~ilID~G~~~~~---~l~~~l---~~~~~~i~~Vv~TH~H~DH~gg~~~l~~~~p~~~i~~~ 143 (281)
+-|-+|+++.+ +...||+|||.+.+. .....+ +-.-..+|+|++||+|.||+|-++.|.+..-..+||+.
T Consensus 191 EVGRSa~lv~T----~eSrVLlDcG~n~a~~~~~~~Pyl~vpE~~~~~lDAViiTHAHLDH~G~lP~LfkYgy~GPVY~T 266 (637)
T COG1782 191 EVGRSALLVST----PESRVLLDCGVNVAGNGEDAFPYLDVPEFQPDELDAVIITHAHLDHCGFLPLLFKYGYDGPVYCT 266 (637)
T ss_pred hccceeEEEec----CCceEEEeccccCCCCccccCcccccccccccccceEEEeecccccccchhhhhhcCCCCCeeeC
Confidence 45668999998 688999999953221 111111 11122589999999999999999999887557789998
Q ss_pred ccCC------------------C-------------CCceEcCCCCEEEeC-CeEEEEEEcCCCCCCCeEEEECCCCCCC
Q 023537 144 KASG------------------S-------------KADLHVEHGDKVSFG-DLFLEVRATPGHTLGCVTYVSGEGPDQP 191 (281)
Q Consensus 144 ~~~~------------------~-------------~~~~~~~~g~~~~lg-~~~i~~~~~pGHt~g~~~~~~~~~~~~~ 191 (281)
+... . .-..+++-|+.-++. |.+++++++ ||--||.+..+... ++
T Consensus 267 ~PTRDlm~LLq~Dyi~va~keg~~ppY~~k~v~~~lkhtItldYgevTDIaPDirLTf~NA-GHILGSA~~HlHIG--dG 343 (637)
T COG1782 267 PPTRDLMVLLQLDYIEVAEKEGGEPPYESKDVRKVLKHTITLDYGEVTDIAPDIRLTFYNA-GHILGSAMAHLHIG--DG 343 (637)
T ss_pred CCcHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHheeeeeccCcccccCCccEEEEecc-cchhcceeeEEEec--CC
Confidence 6421 1 112456667766665 678888776 99999888776653 36
Q ss_pred CCcEEEECccccc
Q 023537 192 QPRMAFTGDALLI 204 (281)
Q Consensus 192 ~~~vlftGD~~~~ 204 (281)
.-+++||||.-|.
T Consensus 344 lyNi~yTGDfk~~ 356 (637)
T COG1782 344 LYNIVYTGDFKFE 356 (637)
T ss_pred ceeEEEecccccc
Confidence 7789999997554
No 35
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=99.01 E-value=9.5e-10 Score=89.97 Aligned_cols=106 Identities=21% Similarity=0.239 Sum_probs=66.3
Q ss_pred CccEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCCceeEEEcCCCCCCCcCChHHHHhhCCCCeEEecccCCCCC
Q 023537 71 SSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASGSKA 150 (281)
Q Consensus 71 ~~~~~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~~i~~Vv~TH~H~DH~gg~~~l~~~~p~~~i~~~~~~~~~~ 150 (281)
.+.+||+|+. ++..||+||.... ........++|+|++||.|.||+.... +.+. ...
T Consensus 5 lgha~~~ie~----~g~~iliDP~~~~-----~~~~~~~~~~D~IlisH~H~DH~~~~~-l~~~-------------~~~ 61 (163)
T PF13483_consen 5 LGHASFLIET----GGKRILIDPWFSS-----VGYAPPPPKADAILISHSHPDHFDPET-LKRL-------------DRD 61 (163)
T ss_dssp EETTEEEEEE----TTEEEEES--TTT-------T-TSS-B-SEEEESSSSTTT-CCCC-CCCH-------------HTS
T ss_pred EEeeEEEEEE----CCEEEEECCCCCc-----cCcccccCCCCEEEECCCccccCChhH-hhhc-------------ccc
Confidence 3567999999 7899999999420 001111257899999999999987621 1111 112
Q ss_pred ceEcCCCCEEEeCCeEEEEEEcC-----CCCCC-CeEEEECCCCCCCCCcEEEECcccc
Q 023537 151 DLHVEHGDKVSFGDLFLEVRATP-----GHTLG-CVTYVSGEGPDQPQPRMAFTGDALL 203 (281)
Q Consensus 151 ~~~~~~g~~~~lg~~~i~~~~~p-----GHt~g-~~~~~~~~~~~~~~~~vlftGD~~~ 203 (281)
...+..++.+++++.+++.+.+. ++..+ .++|+++. ++.++++.||+..
T Consensus 62 ~~vv~~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~i~~----~g~~i~~~Gd~~~ 116 (163)
T PF13483_consen 62 IHVVAPGGEYRFGGFKITAVPAYHDGPGGHPRGENVGYLIEV----GGVTIYHAGDTGF 116 (163)
T ss_dssp SEEE-TTEEEECTTEEEEEEEEEE-STGTS-TTCCEEEEEEE----TTEEEEE-TT--S
T ss_pred cEEEccceEEEEeeeEEEEEeeeccccCCCCcCCeEEEEEEe----CCCEEEEECCCcc
Confidence 34556688899999999987653 45455 78888876 7789999999875
No 36
>PRK00055 ribonuclease Z; Reviewed
Probab=98.98 E-value=1.4e-09 Score=95.75 Aligned_cols=67 Identities=21% Similarity=0.196 Sum_probs=48.6
Q ss_pred CccEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCC---ceeEEEcCCCCCCCcCChHHHHhhC------CCCeEE
Q 023537 71 SSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGL---KLVYAMNTHVHADHVTGTGLIKSKV------PGVKSI 141 (281)
Q Consensus 71 ~~~~~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~---~i~~Vv~TH~H~DH~gg~~~l~~~~------p~~~i~ 141 (281)
..++|++|.. ++..+|||+|.. ....+.+.+. ++++||+||.|+||++|+..+.... ....||
T Consensus 18 r~~~~~li~~----~~~~iLiD~G~g----~~~~l~~~~~~~~~i~~i~lTH~H~DHi~Gl~~l~~~~~~~~~~~~l~iy 89 (270)
T PRK00055 18 RNVSSILLRL----GGELFLFDCGEG----TQRQLLKTGIKPRKIDKIFITHLHGDHIFGLPGLLSTRSLSGRTEPLTIY 89 (270)
T ss_pred CCCCEEEEEE----CCcEEEEECCHH----HHHHHHHcCCCHHHCCEEEEeCCCchhhCcHHHHHHHhhhcCCCceEEEE
Confidence 4577999988 678999999965 2233333343 5899999999999999999886432 235577
Q ss_pred eccc
Q 023537 142 ISKA 145 (281)
Q Consensus 142 ~~~~ 145 (281)
+++.
T Consensus 90 ~p~~ 93 (270)
T PRK00055 90 GPKG 93 (270)
T ss_pred CCcc
Confidence 7653
No 37
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=98.87 E-value=1.6e-08 Score=92.62 Aligned_cols=90 Identities=22% Similarity=0.285 Sum_probs=63.4
Q ss_pred ceeEEEcCCCCCCCcC--ChHHHHhhC-CCCeEEecccC-------CC--CCceEcCCCCEEEeCCeEEEEEEcC-----
Q 023537 111 KLVYAMNTHVHADHVT--GTGLIKSKV-PGVKSIISKAS-------GS--KADLHVEHGDKVSFGDLFLEVRATP----- 173 (281)
Q Consensus 111 ~i~~Vv~TH~H~DH~g--g~~~l~~~~-p~~~i~~~~~~-------~~--~~~~~~~~g~~~~lg~~~i~~~~~p----- 173 (281)
++|+|++||.|.||+. .+..+.+.. +.+.++++... +. .....++.|+.+.+++.+|+++.+.
T Consensus 109 ~IDaVLiTH~H~DHlD~~tl~~l~~~~~~~~~~v~p~~~~~~~~~~Gvp~~rv~~v~~Ge~i~ig~v~It~lpa~h~~~~ 188 (355)
T PRK11709 109 EIDAVLATHDHSDHIDVNVAAAVLQNCADHVKFIGPQACVDLWIGWGVPKERCIVVKPGDVVKVKDIKIHALDSFDRTAL 188 (355)
T ss_pred CCCEEEECCCcccccChHHHHHHHhhcCCCcEEEEcHHHHHHHHhcCCCcceEEEecCCCcEEECCEEEEEEeccccccc
Confidence 5899999999999994 344555544 35677776532 11 1235678899999999999998662
Q ss_pred -----CCCC-----------CCeEEEECCCCCCCCCcEEEECccccc
Q 023537 174 -----GHTL-----------GCVTYVSGEGPDQPQPRMAFTGDALLI 204 (281)
Q Consensus 174 -----GHt~-----------g~~~~~~~~~~~~~~~~vlftGD~~~~ 204 (281)
.|.. ..++|+++. ++.+++|+||+.+.
T Consensus 189 i~~p~~h~~~~~~~~~d~~~~~~gyvie~----~~~tvy~sGDT~~~ 231 (355)
T PRK11709 189 VTLPADGKAAGGVLPDDMDRRAVNYLFKT----PGGNIYHSGDSHYS 231 (355)
T ss_pred cccccccccccccccccCCcceEEEEEEe----CCeEEEEeCCCCcc
Confidence 2221 236788865 67899999999764
No 38
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=2.5e-08 Score=86.89 Aligned_cols=151 Identities=19% Similarity=0.185 Sum_probs=98.1
Q ss_pred EEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCC---ceeEEEcCCCCCCCcCChHHHHhhCCCCeEEecccCC---
Q 023537 74 YTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGL---KLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASG--- 147 (281)
Q Consensus 74 ~~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~---~i~~Vv~TH~H~DH~gg~~~l~~~~p~~~i~~~~~~~--- 147 (281)
+.-++.+ ++..+++|+|.. .+.+.+. +|+.|++||.|.+|.|++..|.. .+++.+..+.
T Consensus 96 ~~tl~~d----~~~v~v~~~gls-------~lak~~vt~d~i~~vv~t~~~~~hlgn~~~f~~----sp~l~~s~e~~gr 160 (302)
T KOG4736|consen 96 QITLVVD----GGDVVVVDTGLS-------VLAKEGVTLDQIDSVVITHKSPGHLGNNNLFPQ----SPILYHSMEYIGR 160 (302)
T ss_pred ccceeec----CCceEEEecCCc-------hhhhcCcChhhcceeEEeccCcccccccccccC----CHHHhhhhhhcCC
Confidence 3456667 688999999964 4444443 57999999999999999987743 3333332211
Q ss_pred CCCceEcCCCCEEEeCCeEEEEEEcCCCCCCCeEEEECCCCCCCCCcEEEECcccccCCccCCC----CCCCC--HHHHH
Q 023537 148 SKADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIRGCGRTD----FQGGS--SSQLY 221 (281)
Q Consensus 148 ~~~~~~~~~g~~~~lg~~~i~~~~~pGHt~g~~~~~~~~~~~~~~~~vlftGD~~~~~~~~~~~----~~~~~--~~~~~ 221 (281)
......++++..++++ -.+++..+||||.-++++++.+. +.-.++.++||++-........ ...+. ....+
T Consensus 161 ~~~pt~l~e~~~~~l~-~~~~V~~TpGht~~~isvlv~n~--~~~GTv~itGDLf~~~~dlde~d~i~~~e~s~d~~~kr 237 (302)
T KOG4736|consen 161 HVTPTELDERPYLKLS-PNVEVWKTPGHTQHDISVLVHNV--DLYGTVAITGDLFPREEDLDEKDDIMSQEGSEDNAAKR 237 (302)
T ss_pred ccChhhhccCCccccC-CceeEeeCCCCCCcceEEEEEee--cccceEEEEeecccCCccccchhhhhhhccCCchhhhh
Confidence 1223456677778887 46888889999999999988874 4678899999987544221110 11111 11122
Q ss_pred HHHHHHHhcCCCceEEEcCCCCCC
Q 023537 222 KSVHSQIFTLPKDTLIYPAHDYKG 245 (281)
Q Consensus 222 ~sl~~~l~~l~~~~~v~PgHG~~~ 245 (281)
++ +++...|.+ ++.||||++.
T Consensus 238 ~~-r~~~v~l~D--~ivpgHg~~f 258 (302)
T KOG4736|consen 238 QS-RNRYVCLAD--WIVPGHGPPF 258 (302)
T ss_pred hh-hhcEEEEee--eeecCCCCce
Confidence 22 235556654 7899999754
No 39
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.61 E-value=2.1e-07 Score=85.99 Aligned_cols=170 Identities=18% Similarity=0.232 Sum_probs=107.0
Q ss_pred CCCccEEEEEEecCCCCCcEEEEeCCC--CChHHHHHHHH-HcCC-ceeEEEcCCCCCCCcCChHHHHhhC----CCCeE
Q 023537 69 KESSTYTYLLADVNHPDKPALLIDPVD--KTVDRDLNVIK-ELGL-KLVYAMNTHVHADHVTGTGLIKSKV----PGVKS 140 (281)
Q Consensus 69 ~~~~~~~yli~~~~~~~~~~ilID~G~--~~~~~l~~~l~-~~~~-~i~~Vv~TH~H~DH~gg~~~l~~~~----p~~~i 140 (281)
+..-.|.-+|+. +...|+|||-. ..+.+-++... .+|. ++.+||.||.|.||.||..-+.+.- ..++|
T Consensus 122 G~DisNITfveG----dtg~IViDpL~t~~tA~aAldl~~~~~g~rPV~aVIYtHsH~DHfGGVkGiv~eadV~sGkV~i 197 (655)
T COG2015 122 GFDISNITFVEG----DTGWIVIDPLVTPETAKAALDLYNQHRGQRPVVAVIYTHSHSDHFGGVKGIVSEADVKSGKVQI 197 (655)
T ss_pred cccccceEEEcC----CcceEEEcccCCcHHHHHHHHHHHHhcCCCCeEEEEeecccccccCCeeeccCHHHcccCceeE
Confidence 333446667776 67899999984 22333334333 3454 4799999999999999998886542 24667
Q ss_pred EecccC-------------------------------------------------CCCCc-eEcCCCCEEEeCCeEEEEE
Q 023537 141 IISKAS-------------------------------------------------GSKAD-LHVEHGDKVSFGDLFLEVR 170 (281)
Q Consensus 141 ~~~~~~-------------------------------------------------~~~~~-~~~~~g~~~~lg~~~i~~~ 170 (281)
++++.- ...+. .+...|+++.|+|.++++.
T Consensus 198 iAP~GFme~avaENvlAGnaM~RRa~YqyG~~Lp~g~~G~V~~giGk~la~G~vsLiaPT~~I~~~gE~~~iDGV~~~Fq 277 (655)
T COG2015 198 IAPAGFMEEAVAENVLAGNAMSRRAQYQYGTLLPPGAQGQVGCGIGKTLATGEVSLIAPTKIIEETGETLTIDGVEFEFQ 277 (655)
T ss_pred ecchhHHHHHHHHhhhhhhhHhhhhhhhhccccCCCccCccccccccccccCceeeecceEEeeccCceEEEeceEEEEe
Confidence 776520 01112 2345789999999999999
Q ss_pred EcCC-CCCCCeEEEECCCCCCCCCcEEEECc-ccccC---CccCCCCCCCCHHHHHHHHHHHHhcCC--CceEEEcCCCC
Q 023537 171 ATPG-HTLGCVTYVSGEGPDQPQPRMAFTGD-ALLIR---GCGRTDFQGGSSSQLYKSVHSQIFTLP--KDTLIYPAHDY 243 (281)
Q Consensus 171 ~~pG-Ht~g~~~~~~~~~~~~~~~~vlftGD-~~~~~---~~~~~~~~~~~~~~~~~sl~~~l~~l~--~~~~v~PgHG~ 243 (281)
.||| -+|..|-+++ |..++|.... +...- -..| .....+...|-+-|.+.+..+. .+ +++..|.+
T Consensus 278 ~tPgtEaPAEM~~y~------P~~kaL~mAEnat~~lHNlytlR-Ga~vRD~~~Ws~ylneal~~fg~~ad-Vmfa~H~W 349 (655)
T COG2015 278 MTPGTEAPAEMHFYF------PRLKALCMAENATHTLHNLYTLR-GAEVRDAKAWSKYLNEALDMFGDDAD-VMFASHTW 349 (655)
T ss_pred eCCCCCCcHHHhhhh------hHHHHHHHHhhccccceeeeecc-cceecchHHHHHHHHHHHHHhccccc-EEEeecCC
Confidence 9998 4677888887 6566655443 22211 1111 1223466777777765555443 34 67888988
Q ss_pred CCCCccc
Q 023537 244 KGFTVST 250 (281)
Q Consensus 244 ~~~~~~~ 250 (281)
+.+....
T Consensus 350 P~wG~~~ 356 (655)
T COG2015 350 PRWGNAH 356 (655)
T ss_pred CccchHH
Confidence 7644333
No 40
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=98.53 E-value=2.8e-07 Score=81.67 Aligned_cols=123 Identities=15% Similarity=0.198 Sum_probs=82.9
Q ss_pred CCccEEEEEEecCCCCCcEEEEeCCCC----ChHHH--HHHHHHcC---CceeEEEcCCCCCCCcCChHHHHhhC-CCCe
Q 023537 70 ESSTYTYLLADVNHPDKPALLIDPVDK----TVDRD--LNVIKELG---LKLVYAMNTHVHADHVTGTGLIKSKV-PGVK 139 (281)
Q Consensus 70 ~~~~~~yli~~~~~~~~~~ilID~G~~----~~~~l--~~~l~~~~---~~i~~Vv~TH~H~DH~gg~~~l~~~~-p~~~ 139 (281)
+.+-+|.+|.- +++.|++|+|.. +..+. ...|...| .-++-|++||.|.||+|.+++|.+.. -+.+
T Consensus 14 dvGrSCilvsi----~Gk~iM~DCGMHMG~nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHcGaLPyfsEv~GY~GP 89 (501)
T KOG1136|consen 14 DVGRSCILVSI----GGKNIMFDCGMHMGFNDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHCGALPYFSEVVGYDGP 89 (501)
T ss_pred ccCceEEEEEE----CCcEEEEecccccccCccccCCCceeecCCCCcccceeEEEEeeecccccccccchHhhhCCCCc
Confidence 44567888877 789999999942 11111 12333332 23799999999999999999997752 2567
Q ss_pred EEecccCC-------------------CC-------------CceEcCCCCEEEeC-CeEEEEEEcCCCCCCCeEEEECC
Q 023537 140 SIISKASG-------------------SK-------------ADLHVEHGDKVSFG-DLFLEVRATPGHTLGCVTYVSGE 186 (281)
Q Consensus 140 i~~~~~~~-------------------~~-------------~~~~~~~g~~~~lg-~~~i~~~~~pGHt~g~~~~~~~~ 186 (281)
+|..-... .. --..+.-.+++.++ ++.++.+.+ ||--|...+++..
T Consensus 90 IYMt~PTkaicPvlLeDyRkv~vd~kGe~n~FT~q~I~nCMKKVv~i~l~qt~~vD~dl~IrayYA-GHVLGAaMf~ikv 168 (501)
T KOG1136|consen 90 IYMTYPTKAICPVLLEDYRKVAVDRKGESNFFTTQDIKNCMKKVVAIDLHQTIQVDEDLQIRAYYA-GHVLGAAMFYIKV 168 (501)
T ss_pred eEEecchhhhchHHHHHHHHHhccccCcccceeHHHHHHHHhheeEeeehheEEecccceeeeeec-ccccceeEEEEEe
Confidence 77753210 00 00223334556665 577777766 9999999999876
Q ss_pred CCCCCCCcEEEECcc
Q 023537 187 GPDQPQPRMAFTGDA 201 (281)
Q Consensus 187 ~~~~~~~~vlftGD~ 201 (281)
++..++++||-
T Consensus 169 ----Gd~svvYTGDY 179 (501)
T KOG1136|consen 169 ----GDQSVVYTGDY 179 (501)
T ss_pred ----cceeEEEecCc
Confidence 77899999995
No 41
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=98.52 E-value=7.9e-07 Score=78.19 Aligned_cols=125 Identities=24% Similarity=0.321 Sum_probs=80.4
Q ss_pred CccEEEEEEecCCCCCcEEEEeCCCCChHHHHH----HHHHcCCceeEEEcCCCCCCCcCChHHHHhhCC-CCeEEeccc
Q 023537 71 SSTYTYLLADVNHPDKPALLIDPVDKTVDRDLN----VIKELGLKLVYAMNTHVHADHVTGTGLIKSKVP-GVKSIISKA 145 (281)
Q Consensus 71 ~~~~~yli~~~~~~~~~~ilID~G~~~~~~l~~----~l~~~~~~i~~Vv~TH~H~DH~gg~~~l~~~~p-~~~i~~~~~ 145 (281)
.+++|++|.. ++..|||||.......-.. .....-.++++|++||.|.||++.......... ...++.++.
T Consensus 12 lGha~~lie~----~~~~iliDP~~~~~~~~~~~~~~~~~~~~~~~D~ilitH~H~DHl~~~~~~~~~~~~~~~~~~p~~ 87 (258)
T COG2220 12 LGHAAFLIET----GGKRILIDPVLSGAPSPSNFPGGLFEDLLPPIDYILITHDHYDHLDDETLIALRTNKAPVVVVPLG 87 (258)
T ss_pred ecceEEEEEE----CCEEEEECcccCCCCCcccccCcCChhhcCCCCEEEEeCCCccccCHHHHHHHhcCCCcEEEeHHH
Confidence 4678999998 7889999998532111111 011122358999999999999998876665532 444555544
Q ss_pred C-------CCC--CceEcCCCCEEEeCCeEEEEEE---cC-CCC--------CCCeEEEECCCCCCCCCcEEEECcccc
Q 023537 146 S-------GSK--ADLHVEHGDKVSFGDLFLEVRA---TP-GHT--------LGCVTYVSGEGPDQPQPRMAFTGDALL 203 (281)
Q Consensus 146 ~-------~~~--~~~~~~~g~~~~lg~~~i~~~~---~p-GHt--------~g~~~~~~~~~~~~~~~~vlftGD~~~ 203 (281)
. +.. ....+..|+.+.+++.++.+.. .+ .+. ....+|++.. ++.++++.||+-+
T Consensus 88 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~a~h~~~~~~~~~~~~~~~~~~~~vi~~----~g~~iyh~GDt~~ 162 (258)
T COG2220 88 AGDLLIRDGVEAERVHELGWGDVIELGDLEITAVPAYHVSARHLPGRGIRPTGLWVGYVIET----PGGRVYHAGDTGY 162 (258)
T ss_pred HHHHHHhcCCCcceEEeecCCceEEecCcEEEEEEeecccccccCCCCccccCCceEEEEEe----CCceEEeccCccH
Confidence 2 111 1234556889999988765443 22 222 3366777765 6789999999953
No 42
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=98.25 E-value=8.5e-06 Score=78.26 Aligned_cols=126 Identities=13% Similarity=0.106 Sum_probs=89.2
Q ss_pred EeCCCccEEEEEEecCCCCCcEEEEeCCCCC--hHHHHHHHHHcCCceeEEEcCCCCCCCcCChHHHHhhC-CCCeEEec
Q 023537 67 FEKESSTYTYLLADVNHPDKPALLIDPVDKT--VDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKV-PGVKSIIS 143 (281)
Q Consensus 67 ~~~~~~~~~yli~~~~~~~~~~ilID~G~~~--~~~l~~~l~~~~~~i~~Vv~TH~H~DH~gg~~~l~~~~-p~~~i~~~ 143 (281)
-....++.||++.- ++-.+|||||... ...+++.++..--++|+|++||...-|+||+++...++ -+|+||++
T Consensus 9 g~~de~~~cyllqi----D~~~iLiDcGwd~~f~~~~i~~l~~~i~~iDaILLShpd~~hlGaLpY~~~k~gl~~~VYAT 84 (764)
T KOG1135|consen 9 GATDEGPLCYLLQI----DGVRILIDCGWDESFDMSMIKELKPVIPTIDAILLSHPDILHLGALPYAVGKLGLNAPVYAT 84 (764)
T ss_pred cccCCCcceEEEEE----cCeEEEEeCCCcchhccchhhhhhcccccccEEEecCCChHHhccchhhHhhCCccceEEEe
Confidence 34567778999998 7899999999642 22344444444446899999999999999999987664 35788887
Q ss_pred ccC-------------------------------CCCCceEcCCCCEEEeC----CeEEEEEEcCCCCCCCeEEEECCCC
Q 023537 144 KAS-------------------------------GSKADLHVEHGDKVSFG----DLFLEVRATPGHTLGCVTYVSGEGP 188 (281)
Q Consensus 144 ~~~-------------------------------~~~~~~~~~~g~~~~lg----~~~i~~~~~pGHt~g~~~~~~~~~~ 188 (281)
-.. .+.-...++-.+.+.+- |+++.++++ ||++|...+.+..
T Consensus 85 ~PV~~mG~m~myD~~~S~~~~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~~Gl~itaynA-GhmiGGsIWkI~k-- 161 (764)
T KOG1135|consen 85 LPVIKMGQMFMYDLYRSHGNVGDFDLFSLDDVDAAFDKIIQLKYSQPVALKGKGSGLTITAYNA-GHMIGGSIWKISK-- 161 (764)
T ss_pred cchhhhhhhhHHHHHhcccccccccccchhhhHHHHhheeeeeccceEEeccccCceEEeeecC-CCccCceEEEEEe--
Confidence 421 00111344555666654 457888766 9999988888765
Q ss_pred CCCCCcEEEECcc
Q 023537 189 DQPQPRMAFTGDA 201 (281)
Q Consensus 189 ~~~~~~vlftGD~ 201 (281)
.+..++++=|.
T Consensus 162 --~~E~ivYavd~ 172 (764)
T KOG1135|consen 162 --VGEDIVYAVDF 172 (764)
T ss_pred --cCceEEEEEec
Confidence 45789999885
No 43
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=98.25 E-value=9.2e-06 Score=71.57 Aligned_cols=56 Identities=13% Similarity=0.172 Sum_probs=39.3
Q ss_pred CcEEEEe-CCCCChHHHHHHHHHcCCceeEEEcCCCCCCCcCChHHHHh-h------CCCCeEEeccc
Q 023537 86 KPALLID-PVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKS-K------VPGVKSIISKA 145 (281)
Q Consensus 86 ~~~ilID-~G~~~~~~l~~~l~~~~~~i~~Vv~TH~H~DH~gg~~~l~~-~------~p~~~i~~~~~ 145 (281)
...+|+| .|......+.+.+. .+++||+||+|.||++|+..+.- + -+-..|+.++.
T Consensus 18 ~~~ilfD~ag~g~~~~l~~k~~----~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g 81 (277)
T TIGR02650 18 PEEIIFDAAEEGSSTLGGKKVA----AFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKE 81 (277)
T ss_pred chhheehhhcccchhHHhhhHh----hcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcc
Confidence 4579999 88765555544443 57899999999999999965533 1 12345777765
No 44
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=98.21 E-value=3.5e-06 Score=74.62 Aligned_cols=53 Identities=25% Similarity=0.261 Sum_probs=36.4
Q ss_pred CcEEEEeCCCCChHHHHHHHHHcC-CceeEEEcCCCCCCCcCChHHHHhhCCCCeEEec
Q 023537 86 KPALLIDPVDKTVDRDLNVIKELG-LKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIIS 143 (281)
Q Consensus 86 ~~~ilID~G~~~~~~l~~~l~~~~-~~i~~Vv~TH~H~DH~gg~~~l~~~~p~~~i~~~ 143 (281)
.+.++||+|.. +.....+.+ .++++||+||.|+||+.|+..|++.+ ...+++.
T Consensus 40 ~~~~lid~g~~----~~~~~~~~~~~~idai~~TH~H~DHi~Gl~~l~~~~-~~~~~~~ 93 (269)
T COG1235 40 VKTLLIDAGPD----LRDQGLRLGVSDLDAILLTHEHSDHIQGLDDLRRAY-TLPIYVN 93 (269)
T ss_pred ceeEEEecChh----HHhhhhcccccccCeEEEecccHHhhcChHHHHHHh-cCCcccc
Confidence 34778888853 222222222 35899999999999999999999876 4444444
No 45
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=98.17 E-value=8.5e-06 Score=73.00 Aligned_cols=68 Identities=24% Similarity=0.249 Sum_probs=47.1
Q ss_pred CCCccEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHcCC---ceeEEEcCCCCCCCcCChHHHHhhC------CCCe
Q 023537 69 KESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKELGL---KLVYAMNTHVHADHVTGTGLIKSKV------PGVK 139 (281)
Q Consensus 69 ~~~~~~~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~~~---~i~~Vv~TH~H~DH~gg~~~l~~~~------p~~~ 139 (281)
......+++|.. .+..+|||||.+. +..+...+. ++++|++||.|.||+.|+..+.... ....
T Consensus 16 ~~r~~~s~ll~~----~~~~~L~DcGeGt----~~~l~~~~~~~~~i~~IfITH~H~DHi~gL~~ll~~~~~~~~~~~l~ 87 (292)
T COG1234 16 KDRNVSSILLRL----EGEKFLFDCGEGT----QHQLLRAGLPPRKIDAIFITHLHGDHIAGLPGLLVSRSFRGRREPLK 87 (292)
T ss_pred CccccceeEEEe----CCeeEEEECCHhH----HHHHHHhcCChhhccEEEeeccccchhcCcHHHHHHhhccCCCCcee
Confidence 345566888887 5778899999653 233333332 5899999999999999999764431 1245
Q ss_pred EEecc
Q 023537 140 SIISK 144 (281)
Q Consensus 140 i~~~~ 144 (281)
+|.++
T Consensus 88 iygP~ 92 (292)
T COG1234 88 IYGPP 92 (292)
T ss_pred EECCc
Confidence 66664
No 46
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=98.14 E-value=1.9e-06 Score=80.80 Aligned_cols=125 Identities=18% Similarity=0.202 Sum_probs=83.7
Q ss_pred CCCccEEEEEEecCCCCCcEEEEeCCCCC---hHHHHHHHHHcCC-ceeEEEcCCCCCCCcCChHHHHhhC-CCCeEEe-
Q 023537 69 KESSTYTYLLADVNHPDKPALLIDPVDKT---VDRDLNVIKELGL-KLVYAMNTHVHADHVTGTGLIKSKV-PGVKSII- 142 (281)
Q Consensus 69 ~~~~~~~yli~~~~~~~~~~ilID~G~~~---~~~l~~~l~~~~~-~i~~Vv~TH~H~DH~gg~~~l~~~~-p~~~i~~- 142 (281)
.+-|-+|.++.. .++.|+.|||-.. .-.-......... ++|.+++||.|.||++.++++.++. -..+++.
T Consensus 23 ~EVGRSC~ile~----kGk~iMld~gvhpaysg~aslpf~d~vd~s~id~llIthFhldh~aslp~~~qkTsf~grvfmt 98 (668)
T KOG1137|consen 23 NEVGRSCHILEY----KGKTIMLDCGVHPAYSGMASLPFYDEVDLSAIDPLLITHFHLDHAASLPFTLQKTSFIGRVFMT 98 (668)
T ss_pred cccCceEEEEEe----cCeEEEeccccCccccccccccchhhcccccccHHHHhhhhhhhcccccceeeeccccceeEEe
Confidence 455668999998 8999999999421 1111222233222 5799999999999999999997653 1223333
Q ss_pred cccC-----------------CC-------------CCceEcCCCCEEEeCCeEEEEEEcCCCCCCCeEEEECCCCCCCC
Q 023537 143 SKAS-----------------GS-------------KADLHVEHGDKVSFGDLFLEVRATPGHTLGCVTYVSGEGPDQPQ 192 (281)
Q Consensus 143 ~~~~-----------------~~-------------~~~~~~~~g~~~~lg~~~i~~~~~pGHt~g~~~~~~~~~~~~~~ 192 (281)
|+.. .. .-..+++--+..++.|+++..++ .||--|...|.++. .+
T Consensus 99 h~TkAi~kwllsdyvrvs~~s~~~~Ly~e~dl~~s~dKie~idfhe~~ev~gIkf~p~~-aGhVlgacMf~vei----ag 173 (668)
T KOG1137|consen 99 HPTKAIYKWLLSDYVRVSNRSGDDRLYTEGDLMESMDKIETIDFHETVEVNGIKFWPYH-AGHVLGACMFMVEI----AG 173 (668)
T ss_pred cchHHHHHhhhhcceEeeeccCccccccchhHHHhhhhheeeeeccccccCCeEEEeec-cchhhhheeeeeee----ce
Confidence 3211 00 00122333455677888898888 69999999999876 77
Q ss_pred CcEEEECccc
Q 023537 193 PRMAFTGDAL 202 (281)
Q Consensus 193 ~~vlftGD~~ 202 (281)
-++||+||..
T Consensus 174 v~lLyTGd~s 183 (668)
T KOG1137|consen 174 VRLLYTGDYS 183 (668)
T ss_pred EEEEeccccc
Confidence 8999999964
No 47
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.04 E-value=0.0001 Score=63.30 Aligned_cols=121 Identities=17% Similarity=0.242 Sum_probs=70.9
Q ss_pred EEEEEecCCCCCcEEEEeCCCC-------------Ch---HHHHHHHHHcCCceeEEEcCCCCCCCcCCh---------H
Q 023537 75 TYLLADVNHPDKPALLIDPVDK-------------TV---DRDLNVIKELGLKLVYAMNTHVHADHVTGT---------G 129 (281)
Q Consensus 75 ~yli~~~~~~~~~~ilID~G~~-------------~~---~~l~~~l~~~~~~i~~Vv~TH~H~DH~gg~---------~ 129 (281)
+-+|.. .+-.||||||-. .. .+..+.+.+.-.+.+.|.+||.|+||..-. .
T Consensus 17 At~vet----~dv~ILiDpGVsLaPkRy~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDHhtPf~~~~y~~s~e 92 (304)
T COG2248 17 ATFVET----KDVGILIDPGVSLAPKRYGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDHHTPFFDGIYEASGE 92 (304)
T ss_pred hheeec----CCeeEEECCccccCccccCCCCCHHHHHHHHHHHHHHHHHHhhCCEEEEeeeccccCCccccchhhhccc
Confidence 456666 688999999931 01 122233333344678899999999998641 1
Q ss_pred HHHhhCCCCeEEeccc-C------------------CCCCceEcCCCCEEEeCCeEEEEEE-cCCCCCC----CeEEEEC
Q 023537 130 LIKSKVPGVKSIISKA-S------------------GSKADLHVEHGDKVSFGDLFLEVRA-TPGHTLG----CVTYVSG 185 (281)
Q Consensus 130 ~l~~~~p~~~i~~~~~-~------------------~~~~~~~~~~g~~~~lg~~~i~~~~-~pGHt~g----~~~~~~~ 185 (281)
.-.+-|.|-.+.+-.. . .......+.||.++.+|+..+++-. +| |-++ ..++.+.
T Consensus 93 ~~~eiY~gK~lLlKhPte~IN~SQ~~Ra~~fl~~~~~~~~~ie~ADgk~f~fG~t~IefS~pvp-HG~eGskLGyVl~v~ 171 (304)
T COG2248 93 TAKEIYKGKLLLLKHPTENINRSQRRRAYRFLESLKDIAREIEYADGKTFEFGGTVIEFSPPVP-HGREGSKLGYVLMVA 171 (304)
T ss_pred chHHHhcCcEEEecCchhhhCHHHHHHHHHHHHHhhhhcceeEecCCceEEeCCEEEEecCCCC-CCCcccccceEEEEE
Confidence 1122232322322211 0 1123456789999999999998843 34 5554 2222222
Q ss_pred CCCCCCCCcEEEECccc
Q 023537 186 EGPDQPQPRMAFTGDAL 202 (281)
Q Consensus 186 ~~~~~~~~~vlftGD~~ 202 (281)
.+ +.+.+++|+.|+-
T Consensus 172 V~--dg~~~i~faSDvq 186 (304)
T COG2248 172 VT--DGKSSIVFASDVQ 186 (304)
T ss_pred Ee--cCCeEEEEccccc
Confidence 21 3788999999974
No 48
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=97.67 E-value=4.9e-05 Score=73.85 Aligned_cols=60 Identities=20% Similarity=0.134 Sum_probs=42.8
Q ss_pred ccEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHc-----CCceeEEEcCCCCCCCcCChHHHHhh
Q 023537 72 STYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKEL-----GLKLVYAMNTHVHADHVTGTGLIKSK 134 (281)
Q Consensus 72 ~~~~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~-----~~~i~~Vv~TH~H~DH~gg~~~l~~~ 134 (281)
...+++|..+ .+..||.|||.+...++.+.-... -.++.+|++||.|+||..|+..+.++
T Consensus 460 NVSS~lv~i~---~~~~IlLDCGEgTlgql~R~YG~~~~~~~lr~LraI~ISHlHADHh~Gl~~vL~~ 524 (746)
T KOG2121|consen 460 NVSSILVRID---SDDSILLDCGEGTLGQLVRHYGVENVDTALRKLRAIFISHLHADHHLGLISVLQA 524 (746)
T ss_pred ceEEEEEecc---CCccEEeecCCchHHHHHHHhhhcchHHHHHhHHHHHHHhhcccccccHHHHHHH
Confidence 3457788763 344699999987655555444311 12578999999999999999877654
No 49
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=97.23 E-value=0.00061 Score=64.13 Aligned_cols=86 Identities=16% Similarity=0.147 Sum_probs=64.8
Q ss_pred ceeEEEcCCCCCCCcCChHHHHhhCCCCeEEecccCCC----------CCceEcCCCCEEEeCCeEEEEEEcCCCCCCCe
Q 023537 111 KLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASGS----------KADLHVEHGDKVSFGDLFLEVRATPGHTLGCV 180 (281)
Q Consensus 111 ~i~~Vv~TH~H~DH~gg~~~l~~~~p~~~i~~~~~~~~----------~~~~~~~~g~~~~lg~~~i~~~~~pGHt~g~~ 180 (281)
...+-|+||.|.||..|+..-... -.+|++..... ..-+.+.-++.+.+.+..+.++.. .|.||++
T Consensus 112 ~~s~yFLsHFHSDHy~GL~~sW~~---p~lYCS~ita~Lv~~~~~v~~~~i~~l~l~~~~~i~~~~vt~ldA-nHCPGa~ 187 (481)
T KOG1361|consen 112 GCSAYFLSHFHSDHYIGLTKSWSH---PPLYCSPITARLVPLKVSVTKQSIQALDLNQPLEIPGIQVTLLDA-NHCPGAV 187 (481)
T ss_pred ccceeeeecccccccccccccccC---CcccccccchhhhhhhcccChhhceeecCCCceeecceEEEEecc-ccCCCce
Confidence 467899999999999888654332 22788765431 223566778888888988888888 5999999
Q ss_pred EEEECCCCCCCCCcEEEECcccc
Q 023537 181 TYVSGEGPDQPQPRMAFTGDALL 203 (281)
Q Consensus 181 ~~~~~~~~~~~~~~vlftGD~~~ 203 (281)
.++++.. .+..+|++||.=+
T Consensus 188 mf~F~~~---~~~~~lhtGDFR~ 207 (481)
T KOG1361|consen 188 MFLFELS---FGPCILHTGDFRA 207 (481)
T ss_pred EEEeecC---CCceEEecCCccc
Confidence 9999863 4569999999643
No 50
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=96.97 E-value=0.0043 Score=56.48 Aligned_cols=59 Identities=19% Similarity=0.262 Sum_probs=37.8
Q ss_pred CCCccEEEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHc---------------------------CCceeEEEcCCCC
Q 023537 69 KESSTYTYLLADVNHPDKPALLIDPVDKTVDRDLNVIKEL---------------------------GLKLVYAMNTHVH 121 (281)
Q Consensus 69 ~~~~~~~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~---------------------------~~~i~~Vv~TH~H 121 (281)
.++..++||++... .+..+-+|+|.. ...+.+.+.+. -..|...++||.|
T Consensus 13 ~e~nls~~L~~~~~--~~s~ialDagt~-l~gi~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~I~~ylItH~H 89 (335)
T PF02112_consen 13 DEGNLSAYLVRSIG--SNSFIALDAGTL-LSGINKLIQSKYFSTSFDITLPFWGFASSPYANAAYIIRNHIKGYLITHPH 89 (335)
T ss_pred CCCCcceeeeeecC--cCceEEecCccH-HHHHHHHhhhcccCCcccccCCccccccChHHHHHHHHHHhhheEEecCCc
Confidence 34556789998754 677899999942 11111111110 0136789999999
Q ss_pred CCCcCChHH
Q 023537 122 ADHVTGTGL 130 (281)
Q Consensus 122 ~DH~gg~~~ 130 (281)
.||+.|+--
T Consensus 90 LDHi~gLvi 98 (335)
T PF02112_consen 90 LDHIAGLVI 98 (335)
T ss_pred hhhHHHHHh
Confidence 999999853
No 51
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=94.91 E-value=0.066 Score=36.44 Aligned_cols=46 Identities=20% Similarity=0.138 Sum_probs=33.6
Q ss_pred EEEEEEecCCCCCcEEEE-eCCCCChHHHHHHHHHcCC---ceeEEEcCCCC-CCCcCC
Q 023537 74 YTYLLADVNHPDKPALLI-DPVDKTVDRDLNVIKELGL---KLVYAMNTHVH-ADHVTG 127 (281)
Q Consensus 74 ~~yli~~~~~~~~~~ilI-D~G~~~~~~l~~~l~~~~~---~i~~Vv~TH~H-~DH~gg 127 (281)
.+.+|.. +.+.+|+ ++|++ .++.+.+.+. |+..||+|+.. ||++||
T Consensus 13 p~l~l~~----d~~rYlFGn~gEG----tQR~~~e~~ikl~kl~~IFlT~~~~w~~~GG 63 (63)
T PF13691_consen 13 PSLLLFF----DSRRYLFGNCGEG----TQRACNEHKIKLSKLNDIFLTGLSSWENIGG 63 (63)
T ss_pred CEEEEEe----CCceEEeccCCcH----HHHHHHHcCCCccccceEEECCCCcccccCC
Confidence 4555555 5689999 99965 3344444443 57999999999 999997
No 52
>PF14234 DUF4336: Domain of unknown function (DUF4336)
Probab=94.21 E-value=0.96 Score=40.26 Aligned_cols=121 Identities=14% Similarity=0.094 Sum_probs=77.3
Q ss_pred EEEEEecCCCCCcEEEEeCCCCChHHHHHHHHHc---CCceeEEEcCCCCCCCcCChHHHHhhCCCCeEEecccCCCC--
Q 023537 75 TYLLADVNHPDKPALLIDPVDKTVDRDLNVIKEL---GLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKASGSK-- 149 (281)
Q Consensus 75 ~yli~~~~~~~~~~ilID~G~~~~~~l~~~l~~~---~~~i~~Vv~TH~H~DH~gg~~~l~~~~p~~~i~~~~~~~~~-- 149 (281)
+-+|+-. +|+.+|..|-. -.+++.+.++++ +.+++|||.--...-|..-+..|+++||+|++++.+.....
T Consensus 22 MTVVrL~---~G~L~VhSPva-pT~el~~~l~~L~~~~G~VkyIVaPn~~lEH~lfl~~w~~afP~A~v~~~Pg~~s~p~ 97 (285)
T PF14234_consen 22 MTVVRLS---DGGLWVHSPVA-PTPELKAELDELEAQHGPVKYIVAPNKGLEHHLFLGPWARAFPDAKVWAPPGQWSFPL 97 (285)
T ss_pred EEEEEEC---CCCEEEECCCC-CCHHHHHHHHHHhccCCceeEEEcCCcchhHHHhHHHHHHHCCCCEEEeCCCcccccc
Confidence 3455542 45566666663 467777888777 55899999876656688999999999999999998764211
Q ss_pred ----------CceEcC-CCCEEEeC-CeEEEEEE---cCCCCCCCeEEEECCCCCCCCCcEEEECcccccC
Q 023537 150 ----------ADLHVE-HGDKVSFG-DLFLEVRA---TPGHTLGCVTYVSGEGPDQPQPRMAFTGDALLIR 205 (281)
Q Consensus 150 ----------~~~~~~-~g~~~~lg-~~~i~~~~---~pGHt~g~~~~~~~~~~~~~~~~vlftGD~~~~~ 205 (281)
.+..+. +.....++ +.....+. ...|.-..++++. ...+.|+..|++++-
T Consensus 98 ~lp~~~~g~~~~~~l~~~~~~~pw~~eid~~~l~~~~lg~~~~~EvvFfH------k~SkTLIvTDll~ni 162 (285)
T PF14234_consen 98 NLPLSWLGIPRDKTLPDDSDPPPWADEIDQEILGPLDLGSGPFQEVVFFH------KPSKTLIVTDLLFNI 162 (285)
T ss_pred cCchhhcCCccccccccccCCCCchhheeeEEecccccCCCceeEEEEEE------CCCCeEEhhhchhhC
Confidence 111111 11111122 23333333 3457777888887 445889999998763
No 53
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=89.94 E-value=0.56 Score=41.27 Aligned_cols=89 Identities=17% Similarity=0.118 Sum_probs=47.2
Q ss_pred ceeEEEcCCCCCCCcCChHH----HHhhCCCCeEEecccC----------------------CCCCceEcCCCCEEEeCC
Q 023537 111 KLVYAMNTHVHADHVTGTGL----IKSKVPGVKSIISKAS----------------------GSKADLHVEHGDKVSFGD 164 (281)
Q Consensus 111 ~i~~Vv~TH~H~DH~gg~~~----l~~~~p~~~i~~~~~~----------------------~~~~~~~~~~g~~~~lg~ 164 (281)
.|+.-++||+|.||+.|+-. +-++- .-+||..+.. .....+.++..+...++-
T Consensus 112 ~I~~y~ITH~HLDHIsGlVinSp~~~~qk-kkTI~gl~~tIDvL~khvFN~lvWP~lt~~gs~~~~~qvv~P~~~~slt~ 190 (356)
T COG5212 112 SINSYFITHAHLDHISGLVINSPDDSKQK-KKTIYGLADTIDVLRKHVFNWLVWPNLTDSGSGTYRMQVVRPAQSLSLTL 190 (356)
T ss_pred hhhheEeccccccchhceeecCccccccC-CceEEechhHHHHHHHHhhcccccCCcccccCceEEEEEeChhHeeeeee
Confidence 47788999999999988732 22221 2345544321 011123455555444443
Q ss_pred eEEEEEEcC-CCC------CCCeEEEECCCCCCCCCcEEEECccc
Q 023537 165 LFLEVRATP-GHT------LGCVTYVSGEGPDQPQPRMAFTGDAL 202 (281)
Q Consensus 165 ~~i~~~~~p-GHt------~g~~~~~~~~~~~~~~~~vlftGD~~ 202 (281)
..+.+++-| .|- .=+..+++++. -.++.+++.||+-
T Consensus 191 t~l~~~pfpv~Hg~ktG~p~ySs~~lfr~n--kS~~~f~~fGDve 233 (356)
T COG5212 191 TRLTGEPFPVSHGKKTGSPSYSSMLLFRSN--KSNEFFAYFGDVE 233 (356)
T ss_pred eeecceeeeccCCcccCCcccceEEEEecC--CCcceEEEecCCC
Confidence 333333322 121 12456777763 2467789999963
No 54
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=71.68 E-value=15 Score=32.31 Aligned_cols=87 Identities=18% Similarity=0.264 Sum_probs=46.0
Q ss_pred ceeEEEcCCCCCCCcCChHH--HHhhCCCCeEEeccc--------CCCCCceEcCCCCE--EEeCCeEEEEEEcCC-CCC
Q 023537 111 KLVYAMNTHVHADHVTGTGL--IKSKVPGVKSIISKA--------SGSKADLHVEHGDK--VSFGDLFLEVRATPG-HTL 177 (281)
Q Consensus 111 ~i~~Vv~TH~H~DH~gg~~~--l~~~~p~~~i~~~~~--------~~~~~~~~~~~g~~--~~lg~~~i~~~~~pG-Ht~ 177 (281)
+++.++++|.|+||...-.. +... ++.++.-+. .+......+..++. +.-++.++.+..+|. |.-
T Consensus 132 ~~d~~~vsh~h~dhld~~~~~~~~~~--~~~~wfvp~g~k~~m~~~gc~~v~el~wwe~~~~vkn~~~~ti~~tPaqHw~ 209 (343)
T KOG3798|consen 132 DLDFAVVSHDHYDHLDADAVKKITDR--NPQIWFVPLGMKKWMEGDGSSTVTELNWGESSEFVKNGKTYTIWCLPAQHWG 209 (343)
T ss_pred CCceeccccccccccchHHHHhhhcc--CccceeehhhhhheecCCCCCceeEeeccchhceecCCcEEEEEEcchhhhc
Confidence 57999999999999754332 2222 233332221 11112233333333 333556677777763 332
Q ss_pred ------------CCeEEEECCCCCCCCCcEEEECcccccC
Q 023537 178 ------------GCVTYVSGEGPDQPQPRMAFTGDALLIR 205 (281)
Q Consensus 178 ------------g~~~~~~~~~~~~~~~~vlftGD~~~~~ 205 (281)
++.++.- +..+++|.||+=|..
T Consensus 210 ~R~L~D~Nk~LW~sw~v~g------~~nrfffaGDTGyc~ 243 (343)
T KOG3798|consen 210 QRGLFDRNKRLWSSWAVIG------ENNRFFFAGDTGYCD 243 (343)
T ss_pred ccccccCCcceeeeeEEec------CCceEEecCCCCccc
Confidence 2223332 555899999986554
No 55
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]
Probab=71.53 E-value=4.8 Score=40.10 Aligned_cols=57 Identities=11% Similarity=0.141 Sum_probs=37.3
Q ss_pred eCCCccEEEEEEecCCCCCcEEEEeCCCCChH---HHHHHHHHcCCceeEEEcCCCCCCCcCChHHHHh
Q 023537 68 EKESSTYTYLLADVNHPDKPALLIDPVDKTVD---RDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKS 133 (281)
Q Consensus 68 ~~~~~~~~yli~~~~~~~~~~ilID~G~~~~~---~l~~~l~~~~~~i~~Vv~TH~H~DH~gg~~~l~~ 133 (281)
.++.+..+++-. ++-.||||.|..--. .+++.++ +++.|++||.-.|-.+|+..+.+
T Consensus 44 pGg~gdaALFav-----nGf~iLv~GgserKS~fwklVrHld----rVdaVLLthpg~dNLpginsllq 103 (934)
T KOG3592|consen 44 PGGRGDAALFAV-----NGFNILVNGGSERKSCFWKLVRHLD----RVDAVLLTHPGADNLPGINSLLQ 103 (934)
T ss_pred CCCCCcceeEee-----cceEEeecCCcccccchHHHHHHHh----hhhhhhhcccccCccccchHHHH
Confidence 444444444433 466788888843112 3444443 68999999999999999887744
No 56
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=40.23 E-value=46 Score=27.73 Aligned_cols=52 Identities=25% Similarity=0.252 Sum_probs=32.5
Q ss_pred EEeCCCCChHHHHHHHHHcCCceeEEEcCCCCCCCcCChHHHHhhCCCCeEEecc
Q 023537 90 LIDPVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSIISK 144 (281)
Q Consensus 90 lID~G~~~~~~l~~~l~~~~~~i~~Vv~TH~H~DH~gg~~~l~~~~p~~~i~~~~ 144 (281)
+||+|. ..-+..+.|++.|.+=-+++.||+-. .+++....+.-+--++++..
T Consensus 92 iIdtg~-Tl~~aA~~Lk~~GA~~V~~~aTHgvf--s~~A~~~l~~s~Id~vvvTn 143 (184)
T PF14572_consen 92 IIDTGG-TLIKAAELLKERGAKKVYACATHGVF--SGDAPERLEESPIDEVVVTN 143 (184)
T ss_dssp EESSTH-HHHHHHHHHHHTTESEEEEEEEEE-----TTHHHHHHHSSESEEEEET
T ss_pred cccchH-HHHHHHHHHHHcCCCEEEEEEeCccc--CchHHHHHhhcCCeEEEEec
Confidence 556773 24555678888888778899999877 45666665554444555554
No 57
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=38.46 E-value=53 Score=27.00 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=26.3
Q ss_pred HHHHHHHHcCCceeEEEcCCCCCCCcCChHHHHhhCCCCeEEe
Q 023537 100 RDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKSKVPGVKSII 142 (281)
Q Consensus 100 ~l~~~l~~~~~~i~~Vv~TH~H~DH~gg~~~l~~~~p~~~i~~ 142 (281)
+....|++.|..+| ||+.|.=| |-.-.+++.+|++++++
T Consensus 55 ~a~~~L~~~Gf~PD-vI~~H~GW---Ge~Lflkdv~P~a~li~ 93 (171)
T PF12000_consen 55 RAARQLRAQGFVPD-VIIAHPGW---GETLFLKDVFPDAPLIG 93 (171)
T ss_pred HHHHHHHHcCCCCC-EEEEcCCc---chhhhHHHhCCCCcEEE
Confidence 34455666788899 66666644 55556677788887766
No 58
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=37.50 E-value=81 Score=28.61 Aligned_cols=46 Identities=26% Similarity=0.261 Sum_probs=29.6
Q ss_pred CCcEEEEe----CCCCChHHHHHHHHHcCCceeEEEcCCCCCCCcCChHHHHh
Q 023537 85 DKPALLID----PVDKTVDRDLNVIKELGLKLVYAMNTHVHADHVTGTGLIKS 133 (281)
Q Consensus 85 ~~~~ilID----~G~~~~~~l~~~l~~~~~~i~~Vv~TH~H~DH~gg~~~l~~ 133 (281)
++.++||| ||. ..-.-.+.|++.|.+=-++..||.=.= +++....+
T Consensus 214 gk~~iiVDDiIdTgG-Ti~~Aa~~Lk~~GAk~V~a~~tH~vfs--~~a~~~l~ 263 (314)
T COG0462 214 GKDVVIVDDIIDTGG-TIAKAAKALKERGAKKVYAAATHGVFS--GAALERLE 263 (314)
T ss_pred CCEEEEEeccccccH-HHHHHHHHHHHCCCCeEEEEEEchhhC--hHHHHHHh
Confidence 44566655 563 244556788888988788999998653 44444433
No 59
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=37.12 E-value=78 Score=28.75 Aligned_cols=36 Identities=33% Similarity=0.409 Sum_probs=25.7
Q ss_pred CcEEEEe----CCCCChHHHHHHHHHcCCceeEEEcCCCCC
Q 023537 86 KPALLID----PVDKTVDRDLNVIKELGLKLVYAMNTHVHA 122 (281)
Q Consensus 86 ~~~ilID----~G~~~~~~l~~~l~~~~~~i~~Vv~TH~H~ 122 (281)
+.+++|| +|. ......+.+++.|.+--+++.||+=.
T Consensus 218 r~viIVDDIidTG~-Tl~~aa~~Lk~~GA~~V~~~~tHglf 257 (320)
T PRK02269 218 KKCILIDDMIDTAG-TICHAADALAEAGATEVYASCTHPVL 257 (320)
T ss_pred CEEEEEeeecCcHH-HHHHHHHHHHHCCCCEEEEEEECccc
Confidence 4455554 663 36667788888898878899999744
No 60
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=34.55 E-value=79 Score=26.64 Aligned_cols=58 Identities=17% Similarity=0.261 Sum_probs=37.7
Q ss_pred CCcEEEEeCCCCCh---HHHHHHHHHcCCc-eeEEEcCCCCCCCcCChHHHHhhCCCCeEEecccC
Q 023537 85 DKPALLIDPVDKTV---DRDLNVIKELGLK-LVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKAS 146 (281)
Q Consensus 85 ~~~~ilID~G~~~~---~~l~~~l~~~~~~-i~~Vv~TH~H~DH~gg~~~l~~~~p~~~i~~~~~~ 146 (281)
+..++|+|+..... ...++.+++.|.+ +..+.+ .+--.|+..+.+.||++++|+..-+
T Consensus 122 ~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~v~~l----l~~~~gl~~l~~~~p~v~i~~~~id 183 (207)
T TIGR01091 122 ERTVIVLDPMLATGGTMIAALDLLKKRGAKKIKVLSI----VAAPEGIEAVEKAHPDVDIYTAAID 183 (207)
T ss_pred CCEEEEECCCccchHHHHHHHHHHHHcCCCEEEEEEE----ecCHHHHHHHHHHCCCCEEEEEEEC
Confidence 45688999875443 4455666666654 433322 2223678888899999999987544
No 61
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=33.76 E-value=54 Score=29.82 Aligned_cols=38 Identities=26% Similarity=0.224 Sum_probs=26.7
Q ss_pred CCcEEEEeCCC---CChHHHHHHHHHcCCceeEEEcCCCCC
Q 023537 85 DKPALLIDPVD---KTVDRDLNVIKELGLKLVYAMNTHVHA 122 (281)
Q Consensus 85 ~~~~ilID~G~---~~~~~l~~~l~~~~~~i~~Vv~TH~H~ 122 (281)
++.+|+||=-. ....+..+.+++.|.+--+++.||+-.
T Consensus 217 Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~THgvf 257 (319)
T PRK04923 217 GKTCVLVDDLVDTAGTLCAAAAALKQRGALKVVAYITHPVL 257 (319)
T ss_pred CCEEEEEecccCchHHHHHHHHHHHHCCCCEEEEEEECccc
Confidence 45567766332 235566678888888878899999876
No 62
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=31.76 E-value=87 Score=28.60 Aligned_cols=37 Identities=22% Similarity=0.149 Sum_probs=26.2
Q ss_pred CCcEEEEe----CCCCChHHHHHHHHHcCCceeEEEcCCCCC
Q 023537 85 DKPALLID----PVDKTVDRDLNVIKELGLKLVYAMNTHVHA 122 (281)
Q Consensus 85 ~~~~ilID----~G~~~~~~l~~~l~~~~~~i~~Vv~TH~H~ 122 (281)
++.++||| +| .......+.+++.|.+.-+++.||+=.
T Consensus 230 gr~vlIVDDIidTG-~Tl~~aa~~L~~~Ga~~V~~~~THglf 270 (326)
T PLN02297 230 GRHVVIVDDLVQSG-GTLIECQKVLAAHGAAKVSAYVTHGVF 270 (326)
T ss_pred CCeEEEEecccCcH-HHHHHHHHHHHHCCCcEEEEEEECccc
Confidence 35566666 44 235566778888898888899999744
No 63
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=31.24 E-value=51 Score=32.38 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=27.7
Q ss_pred CCCCCCcCChHHHHhhCCCCeEEecccCCCCC-----ceEcCCCCEEEeCCeEEEEEEcCCCCC
Q 023537 119 HVHADHVTGTGLIKSKVPGVKSIISKASGSKA-----DLHVEHGDKVSFGDLFLEVRATPGHTL 177 (281)
Q Consensus 119 H~H~DH~gg~~~l~~~~p~~~i~~~~~~~~~~-----~~~~~~g~~~~lg~~~i~~~~~pGHt~ 177 (281)
=.|.|| |=..+.+.+.+..|.+.+.-+... ...+.. |.+++++.||||..
T Consensus 159 MGHVDH--GKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~-------G~~iTFLDTPGHaA 213 (683)
T KOG1145|consen 159 MGHVDH--GKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPS-------GKSITFLDTPGHAA 213 (683)
T ss_pred eecccC--ChhhHHHHHhhCceehhhcCCccceeceEEEecCC-------CCEEEEecCCcHHH
Confidence 467788 334444444455666655433211 122223 45788999999974
No 64
>cd02791 MopB_CT_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. This CD (MopB_CT_Nitrate-R-Nap) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs
Probab=30.01 E-value=1.7e+02 Score=21.68 Aligned_cols=63 Identities=22% Similarity=0.219 Sum_probs=35.6
Q ss_pred CCCCCCcC-ChHHHHhhCCCCeEEecccCCCCCceEcCCCCEEEeC----CeEEEEEEcCCCCCCCeEEE
Q 023537 119 HVHADHVT-GTGLIKSKVPGVKSIISKASGSKADLHVEHGDKVSFG----DLFLEVRATPGHTLGCVTYV 183 (281)
Q Consensus 119 H~H~DH~g-g~~~l~~~~p~~~i~~~~~~~~~~~~~~~~g~~~~lg----~~~i~~~~~pGHt~g~~~~~ 183 (281)
|.|.++.. ....+.+..+...+++++.+.... -+.+|+.+.+- ...+.+.-+++=.+|.+.+-
T Consensus 15 ~~~s~~~~~~~~~l~~~~~~~~v~in~~dA~~l--gi~~Gd~V~v~~~~G~~~~~v~~~~~i~~g~v~~~ 82 (122)
T cd02791 15 QWHTMTRTGRVPRLNAHVPEPYVEIHPEDAARL--GLKEGDLVRVTSRRGEVVLRVRVTDRVRPGEVFVP 82 (122)
T ss_pred hhccCCccCChHHHHhhCCCCEEEECHHHHHHc--CCCCCCEEEEEcCCEEEEEEEEECCCcCCCeEEEe
Confidence 45666533 345556666666777877654332 35777777652 34455555665555555443
No 65
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=28.60 E-value=35 Score=30.49 Aligned_cols=28 Identities=14% Similarity=0.159 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEcCCCC
Q 023537 216 SSSQLYKSVHSQIFTLPKDTLIYPAHDY 243 (281)
Q Consensus 216 ~~~~~~~sl~~~l~~l~~~~~v~PgHG~ 243 (281)
..-|..||.-+|-...++.-.++||||-
T Consensus 232 ~~GDL~ES~lKR~~gVKDSG~llPGHGG 259 (285)
T PRK11624 232 VLGDLTESMFKREAGIKDSGHLIPGHGG 259 (285)
T ss_pred HHhHHHHHHHhhccCCCCCcCcCCCcCc
Confidence 3467888887777778776689999993
No 66
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=28.29 E-value=1.2e+02 Score=25.58 Aligned_cols=58 Identities=16% Similarity=0.279 Sum_probs=38.0
Q ss_pred CCcEEEEeCCCCC---hHHHHHHHHHcCCc-eeEEEcCCCCCCCcCChHHHHhhCCCCeEEecccC
Q 023537 85 DKPALLIDPVDKT---VDRDLNVIKELGLK-LVYAMNTHVHADHVTGTGLIKSKVPGVKSIISKAS 146 (281)
Q Consensus 85 ~~~~ilID~G~~~---~~~l~~~l~~~~~~-i~~Vv~TH~H~DH~gg~~~l~~~~p~~~i~~~~~~ 146 (281)
++.++|+|+-... ....++.+++.|.+ +..+.+ ..--.|+..+.+++|++++|+..-+
T Consensus 124 ~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~~~~l----l~~~~gl~~l~~~~p~v~i~~~~iD 185 (209)
T PRK00129 124 ERTVIVVDPMLATGGSAIAAIDLLKKRGAKNIKVLCL----VAAPEGIKALEEAHPDVEIYTAAID 185 (209)
T ss_pred CCEEEEECCcccchHHHHHHHHHHHHcCCCEEEEEEE----ecCHHHHHHHHHHCCCcEEEEEeec
Confidence 4668899976543 34455666666643 432222 2334788899999999999997544
No 67
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=28.08 E-value=60 Score=29.23 Aligned_cols=36 Identities=14% Similarity=0.241 Sum_probs=24.7
Q ss_pred CCcEEEEeCCC---CChHHHHHHHHHcCCceeEEEcCCC
Q 023537 85 DKPALLIDPVD---KTVDRDLNVIKELGLKLVYAMNTHV 120 (281)
Q Consensus 85 ~~~~ilID~G~---~~~~~l~~~l~~~~~~i~~Vv~TH~ 120 (281)
++.++|||=-. .......+.+++.|.+--+++.||.
T Consensus 211 Gr~vIIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~tHg 249 (301)
T PRK07199 211 GRTPVLVDDIVSTGRTLIEAARQLRAAGAASPDCVVVHA 249 (301)
T ss_pred CCEEEEEecccCcHHHHHHHHHHHHHCCCcEEEEEEEee
Confidence 35566666432 2355666788888888778999997
No 68
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=26.98 E-value=75 Score=24.84 Aligned_cols=43 Identities=23% Similarity=0.316 Sum_probs=24.1
Q ss_pred HHHHHHHHHhcC--CCceEEEcCCCCCCCCcccHHHHHHhCCCCcCCHHHH
Q 023537 220 LYKSVHSQIFTL--PKDTLIYPAHDYKGFTVSTVGEEIQYNPRLTKDEVLV 268 (281)
Q Consensus 220 ~~~sl~~~l~~l--~~~~~v~PgHG~~~~~~~~~~~~~~~n~~l~~~~~~~ 268 (281)
+.+.+++.+... +...+|+..||- .....++..+|.....+..
T Consensus 3 ~~~~I~~~~~~~~~~~~~llfsaHgi------P~~~~~~gd~Y~~~~~~~~ 47 (135)
T cd00419 3 LADHIREALAELPREKDRLLFSAHGL------PVRDIKKGDPYPDQCEETA 47 (135)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCC------HHHHhhCCCCHHHHHHHHH
Confidence 344554445444 556799999993 3334445556655444444
No 69
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=25.91 E-value=1e+02 Score=28.07 Aligned_cols=56 Identities=14% Similarity=0.131 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhcCC--CceEEEcCCCCCCCCcccHHHHHHhCCCCcCCHHHH-HHHhcCCCCC
Q 023537 217 SSQLYKSVHSQIFTLP--KDTLIYPAHDYKGFTVSTVGEEIQYNPRLTKDEVLV-WLMLNSFISM 278 (281)
Q Consensus 217 ~~~~~~sl~~~l~~l~--~~~~v~PgHG~~~~~~~~~~~~~~~n~~l~~~~~~~-~~~~~~~~~~ 278 (281)
.+.|.+++++.+.+++ +..+|+..||- +.. ..+..-||-..-.+.. ..++++++++
T Consensus 166 I~a~a~~I~~~~~~~~~~~~~llfSaHgl----P~~--~~~~GDpY~~q~~~t~~li~e~lg~~~ 224 (320)
T COG0276 166 IEALADSIREKLAKHPRDDDVLLFSAHGL----PKR--YIDEGDPYPQQCQETTRLIAEALGLPE 224 (320)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEecCCC----chh--hhhcCCchHHHHHHHHHHHHHHcCCCc
Confidence 4677888887888874 66799999994 222 2222456665555555 6667777643
No 70
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=25.42 E-value=77 Score=29.00 Aligned_cols=38 Identities=29% Similarity=0.284 Sum_probs=26.4
Q ss_pred CCcEEEEeCCCC---ChHHHHHHHHHcCCceeEEEcCCCCC
Q 023537 85 DKPALLIDPVDK---TVDRDLNVIKELGLKLVYAMNTHVHA 122 (281)
Q Consensus 85 ~~~~ilID~G~~---~~~~l~~~l~~~~~~i~~Vv~TH~H~ 122 (281)
++.++|||=-.. ......+.+++.|.+.-+++.||+-.
T Consensus 218 Gk~VIIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~atHglf 258 (332)
T PRK00553 218 NKNCLIVDDMIDTGGTVIAAAKLLKKQKAKKVCVMATHGLF 258 (332)
T ss_pred CCEEEEEeccccchHHHHHHHHHHHHcCCcEEEEEEEeeec
Confidence 456777774422 24455677788888888899999854
No 71
>cd00508 MopB_CT_Fdh-Nap-like This CD includes formate dehydrogenases (Fdh) H and N; nitrate reductases, Nap and Nas; and other related proteins. Formate dehydrogenase H is a component of the anaerobic formate hydrogen lyase complex and catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. Formate dehydrogenase N (alpha subunit) is the major electron donor to the bacterial nitrate respiratory chain and nitrate reductases, Nap and Nas, catalyze the reduction of nitrate to nitrite. This CD (MopB_CT_Fdh-Nap-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=24.51 E-value=2.6e+02 Score=20.52 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=32.4
Q ss_pred ChHHHHhhCCCCeEEecccCCCCCceEcCCCCEEEeC----CeEEEEEEcCCCCCCCeEEE
Q 023537 127 GTGLIKSKVPGVKSIISKASGSKADLHVEHGDKVSFG----DLFLEVRATPGHTLGCVTYV 183 (281)
Q Consensus 127 g~~~l~~~~p~~~i~~~~~~~~~~~~~~~~g~~~~lg----~~~i~~~~~pGHt~g~~~~~ 183 (281)
....+.+..+...+++++.+.... -+.+|+.+.+- ...+.+.-+++-.+|.+.+.
T Consensus 24 ~~~~l~~~~~~~~v~inp~dA~~l--gi~~Gd~V~v~~~~G~~~~~v~~~~~i~~g~v~~~ 82 (120)
T cd00508 24 RSPRLAALAPEPFVEIHPEDAARL--GIKDGDLVRVSSRRGSVVVRARVTDRVRPGTVFMP 82 (120)
T ss_pred ccHHHHhhCCCCEEEECHHHHHHc--CCCCCCEEEEEeCCEEEEEEEEECCCcCCCEEEEe
Confidence 445555555666788877654332 36777777653 34455555666666655554
No 72
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=23.67 E-value=1.9e+02 Score=26.26 Aligned_cols=38 Identities=26% Similarity=0.388 Sum_probs=25.4
Q ss_pred CCcEEEEeCCCC---ChHHHHHHHHHcCCceeEEEcCCCCC
Q 023537 85 DKPALLIDPVDK---TVDRDLNVIKELGLKLVYAMNTHVHA 122 (281)
Q Consensus 85 ~~~~ilID~G~~---~~~~l~~~l~~~~~~i~~Vv~TH~H~ 122 (281)
++.+++||=-.. ......+.+++.|.+--+++.||+-.
T Consensus 218 gk~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~tHgif 258 (323)
T PRK02458 218 GKKAILIDDILNTGKTFAEAAKIVEREGATEIYAVASHGLF 258 (323)
T ss_pred CCEEEEEcceeCcHHHHHHHHHHHHhCCCCcEEEEEEChhc
Confidence 456777664322 24555677777887767799999865
No 73
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=23.64 E-value=1.4e+02 Score=26.15 Aligned_cols=40 Identities=28% Similarity=0.273 Sum_probs=22.8
Q ss_pred CcEEEECcccccCCccCCCCCCCCHHHHHHHHHHHHhcCCCceEEEcC-CCC
Q 023537 193 PRMAFTGDALLIRGCGRTDFQGGSSSQLYKSVHSQIFTLPKDTLIYPA-HDY 243 (281)
Q Consensus 193 ~~vlftGD~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~l~~~~~v~Pg-HG~ 243 (281)
.-++++||++.. ++.+++.... +.+..++..++++|| |+.
T Consensus 57 D~vvitGDl~~~----------~~~~~~~~~~-~~l~~l~~Pv~~v~GNHD~ 97 (275)
T PRK11148 57 DLIVATGDLAQD----------HSSEAYQHFA-EGIAPLRKPCVWLPGNHDF 97 (275)
T ss_pred CEEEECCCCCCC----------CCHHHHHHHH-HHHhhcCCcEEEeCCCCCC
Confidence 468999998631 2233333333 456666555566665 663
No 74
>KOG2414 consensus Putative Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=23.52 E-value=43 Score=31.45 Aligned_cols=20 Identities=35% Similarity=0.473 Sum_probs=14.2
Q ss_pred eecccccc-hhhhhhhcccCC
Q 023537 3 QLRFLKSP-LLSSSNILSNFS 22 (281)
Q Consensus 3 ~~~~~~~~-~~~~~~~~~~~~ 22 (281)
++|-+||| +++.++.-|+-+
T Consensus 224 ~lRlIKSpaEl~~Mr~a~~I~ 244 (488)
T KOG2414|consen 224 RLRLIKSPAELELMREACNIA 244 (488)
T ss_pred HHHccCCHHHHHHHHHHhhhh
Confidence 57888987 466777766655
No 75
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=23.28 E-value=1.9e+02 Score=22.12 Aligned_cols=13 Identities=23% Similarity=0.222 Sum_probs=9.8
Q ss_pred CCCcEEEECcccc
Q 023537 191 PQPRMAFTGDALL 203 (281)
Q Consensus 191 ~~~~vlftGD~~~ 203 (281)
.-..++++||++.
T Consensus 35 ~~d~vi~~GDl~~ 47 (144)
T cd07400 35 DPDLVVITGDLTQ 47 (144)
T ss_pred CCCEEEECCCCCC
Confidence 3457899999874
No 76
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=22.43 E-value=53 Score=28.87 Aligned_cols=26 Identities=15% Similarity=0.379 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhcCCCceEEEcCCCC
Q 023537 218 SQLYKSVHSQIFTLPKDTLIYPAHDY 243 (281)
Q Consensus 218 ~~~~~sl~~~l~~l~~~~~v~PgHG~ 243 (281)
.++.||.-+|....++.-.++||||-
T Consensus 217 GDL~eS~iKR~~gvKDsg~liPGHGG 242 (265)
T COG0575 217 GDLFESYIKRLLGIKDSGWLIPGHGG 242 (265)
T ss_pred hhHHHHHHHHccCCCCcCCCCCCcCc
Confidence 57788665677777776689999993
No 77
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=21.93 E-value=1.7e+02 Score=22.62 Aligned_cols=8 Identities=25% Similarity=0.497 Sum_probs=3.4
Q ss_pred EEEECccc
Q 023537 195 MAFTGDAL 202 (281)
Q Consensus 195 vlftGD~~ 202 (281)
+++.||.+
T Consensus 3 ~~~~Gds~ 10 (157)
T cd01833 3 IMPLGDSI 10 (157)
T ss_pred eeecCCce
Confidence 34444443
No 78
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=21.04 E-value=64 Score=27.19 Aligned_cols=55 Identities=20% Similarity=0.389 Sum_probs=37.1
Q ss_pred CCcEEEEeCCCCC---hHHHHHHHHHcCCc---e--eEEEcCCCCCCCcCChHHHHhhCCCCeEEeccc
Q 023537 85 DKPALLIDPVDKT---VDRDLNVIKELGLK---L--VYAMNTHVHADHVTGTGLIKSKVPGVKSIISKA 145 (281)
Q Consensus 85 ~~~~ilID~G~~~---~~~l~~~l~~~~~~---i--~~Vv~TH~H~DH~gg~~~l~~~~p~~~i~~~~~ 145 (281)
...++|+||-... .-..++.|++.|.+ | -.++.+- -|+..+.++||++++|+..-
T Consensus 121 ~~~VillDpmlaTG~s~~~ai~~L~~~G~~~~~I~~v~~ias~------~Gl~~l~~~~P~v~I~ta~i 183 (207)
T PF14681_consen 121 NRKVILLDPMLATGGSAIAAIEILKEHGVPEENIIIVSVIASP------EGLERLLKAFPDVRIYTAAI 183 (207)
T ss_dssp TSEEEEEESEESSSHHHHHHHHHHHHTTG-GGEEEEEEEEEEH------HHHHHHHHHSTTSEEEEEEE
T ss_pred CCEEEEEeccccchhhHHHHHHHHHHcCCCcceEEEEEEEecH------HHHHHHHHhCCCeEEEEEEE
Confidence 4678899986443 34455666666653 2 3444443 38899999999999998753
No 79
>cd02792 MopB_CT_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. This CD (MopB_CT_Formate-Dh-Na-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=20.52 E-value=3.6e+02 Score=19.89 Aligned_cols=55 Identities=15% Similarity=0.087 Sum_probs=32.6
Q ss_pred ChHHHHhhCCCCeEEecccCCCCCceEcCCCCEEEeC----CeEEEEEEcCCCCCCCeEEE
Q 023537 127 GTGLIKSKVPGVKSIISKASGSKADLHVEHGDKVSFG----DLFLEVRATPGHTLGCVTYV 183 (281)
Q Consensus 127 g~~~l~~~~p~~~i~~~~~~~~~~~~~~~~g~~~~lg----~~~i~~~~~pGHt~g~~~~~ 183 (281)
....+.+..|...+++++.+.... -+++|+.+.+- ...+.+.-+++=.+|.+.+-
T Consensus 24 ~~~~l~~~~~~~~v~i~p~dA~~l--gi~~Gd~V~v~s~~G~~~~~v~v~~~i~~g~v~~~ 82 (122)
T cd02792 24 NSPYLAELQPEMFVEISPELAAER--GIKNGDMVWVSSPRGKIKVKALVTDRVKPHEVGIP 82 (122)
T ss_pred CCHHHHhhCCCcEEEECHHHHHHc--CCCCCCEEEEEcCCceEEEEEEECCCcCCCEEEEe
Confidence 445666666666788877654332 36677777652 34455555665555655544
Done!