Query 023538
Match_columns 281
No_of_seqs 178 out of 1195
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 04:49:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023538.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023538hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3882 Tetraspanin family int 100.0 5.8E-41 1.3E-45 295.6 16.3 218 3-250 7-234 (237)
2 PF00335 Tetraspannin: Tetrasp 99.9 4.5E-28 9.7E-33 207.6 -4.2 211 4-244 1-221 (221)
3 cd03163 TM4SF8_like_LEL Tetras 99.5 1.3E-15 2.8E-20 117.5 0.9 95 92-216 1-104 (105)
4 cd03160 CD37_CD82_like_LEL Tet 99.5 3.7E-15 8E-20 117.2 1.0 107 92-216 1-116 (117)
5 cd03161 TM4SF2_6_like_LEL Tetr 99.5 5.6E-15 1.2E-19 113.5 1.7 99 93-216 1-104 (104)
6 cd03164 CD53_like_LEL Tetraspa 99.5 8.6E-15 1.9E-19 108.9 1.2 84 93-220 1-86 (86)
7 cd03154 TM4SF3_like_LEL Tetras 99.5 5.2E-15 1.1E-19 113.1 -0.0 97 89-216 1-100 (100)
8 cd03165 NET-5_like_LEL Tetrasp 99.5 4.1E-15 8.9E-20 113.1 -0.8 93 94-216 2-98 (98)
9 cd03166 CD63_LEL Tetraspanin, 99.5 8E-15 1.7E-19 111.8 -0.0 93 93-216 1-99 (99)
10 cd03155 CD151_like_LEL Tetrasp 99.5 1.2E-14 2.6E-19 112.9 1.0 99 93-216 1-110 (110)
11 cd03159 TM4SF9_like_LEL Tetras 99.5 1.1E-14 2.3E-19 115.3 0.3 100 93-216 1-121 (121)
12 cd03158 penumbra_like_LEL Tetr 99.4 2.7E-14 5.8E-19 112.8 1.2 100 93-216 1-119 (119)
13 cd03156 uroplakin_I_like_LEL T 99.4 1.7E-14 3.7E-19 112.4 -0.2 101 92-215 2-113 (114)
14 cd03167 oculospanin_like_LEL T 99.4 6.1E-14 1.3E-18 111.0 0.9 99 94-216 2-120 (120)
15 cd03162 peripherin_like_LEL Te 99.4 8.9E-14 1.9E-18 112.7 0.7 109 93-215 1-142 (143)
16 cd03157 TM4SF12_like_LEL Tetra 99.3 7.2E-13 1.6E-17 102.0 3.8 83 106-214 17-101 (103)
17 cd03127 tetraspanin_LEL Tetras 99.3 5.8E-13 1.3E-17 99.0 0.5 62 127-215 28-89 (90)
18 cd03152 CD9_LEL Tetraspanin, e 99.2 1.2E-12 2.7E-17 96.9 -0.9 82 93-216 1-84 (84)
19 cd03151 CD81_like_LEL Tetraspa 98.7 1.5E-09 3.3E-14 80.3 -1.2 81 93-215 1-83 (84)
20 PF05640 NKAIN: Na,K-Atpase In 86.8 9.5 0.00021 32.6 10.1 44 45-88 36-79 (200)
21 PF10724 DUF2516: Protein of u 84.6 7 0.00015 29.8 7.5 27 7-33 3-29 (100)
22 PF04156 IncA: IncA protein; 82.4 2 4.3E-05 36.3 4.2 11 86-96 53-63 (191)
23 PF14967 FAM70: FAM70 protein 80.8 2 4.3E-05 38.9 3.7 76 14-93 32-113 (327)
24 KOG4433 Tweety transmembrane/c 78.7 4.1 9E-05 39.3 5.3 43 42-84 209-252 (526)
25 PF05915 DUF872: Eukaryotic pr 76.1 4.3 9.4E-05 31.7 4.0 49 10-58 44-92 (115)
26 PRK12585 putative monovalent c 75.9 27 0.00058 29.8 8.8 25 9-33 5-29 (197)
27 cd07912 Tweety_N N-terminal do 74.4 11 0.00025 36.0 7.1 40 42-81 208-248 (418)
28 PF11297 DUF3098: Protein of u 73.2 4.4 9.5E-05 28.7 3.0 22 12-33 6-27 (69)
29 PF04103 CD20: CD20-like famil 72.0 1.2 2.7E-05 35.5 0.0 72 15-87 5-76 (150)
30 COG4993 Gcd Glucose dehydrogen 71.2 17 0.00037 36.5 7.5 62 9-81 3-65 (773)
31 PF12877 DUF3827: Domain of un 66.9 3 6.5E-05 41.6 1.4 53 214-267 267-325 (684)
32 PF07086 DUF1352: Protein of u 66.3 52 0.0011 28.0 8.6 79 8-90 39-119 (186)
33 PF09323 DUF1980: Domain of un 64.6 15 0.00032 30.9 5.1 39 45-83 35-86 (182)
34 PF15050 SCIMP: SCIMP protein 62.8 18 0.00038 28.4 4.7 34 210-244 2-35 (133)
35 PF06770 Arif-1: Actin-rearran 60.3 65 0.0014 27.6 8.1 54 14-67 3-66 (196)
36 PF06341 DUF1056: Protein of u 59.2 35 0.00076 23.6 5.2 49 2-58 4-52 (63)
37 COG2245 Predicted membrane pro 56.6 81 0.0018 26.4 7.8 21 13-33 27-47 (182)
38 PF04156 IncA: IncA protein; 55.6 51 0.0011 27.5 6.9 20 11-30 6-25 (191)
39 PF11381 DUF3185: Protein of u 54.0 9.5 0.00021 26.1 1.7 46 14-59 5-58 (59)
40 KOG3646 Acetylcholine receptor 53.1 22 0.00049 34.3 4.6 90 6-98 234-325 (486)
41 PF10361 DUF2434: Protein of u 50.0 23 0.00049 32.1 3.9 48 220-270 47-94 (296)
42 PF03729 DUF308: Short repeat 48.7 81 0.0018 21.2 6.4 47 19-68 2-48 (72)
43 PF02439 Adeno_E3_CR2: Adenovi 48.1 44 0.00095 20.7 3.8 24 217-240 7-30 (38)
44 COG3247 HdeD Uncharacterized c 47.6 87 0.0019 26.6 6.9 50 15-68 21-71 (185)
45 PF12273 RCR: Chitin synthesis 46.1 16 0.00035 28.8 2.2 8 252-259 34-41 (130)
46 KOG4054 Uncharacterized conser 46.0 1.8E+02 0.0039 24.4 8.2 77 9-87 40-116 (183)
47 PHA00363 major capsid protein 45.9 7.8 0.00017 37.6 0.4 25 246-270 407-431 (557)
48 PF04906 Tweety: Tweety; Inte 45.3 11 0.00025 35.9 1.4 32 50-81 194-225 (406)
49 PF15125 TMEM238: TMEM238 prot 44.8 86 0.0019 21.8 5.2 46 9-61 6-51 (65)
50 cd03153 PHEMX_like_LEL Tetrasp 44.6 8.7 0.00019 28.2 0.4 15 131-149 34-48 (87)
51 PF01034 Syndecan: Syndecan do 40.3 11 0.00023 26.2 0.3 14 242-256 34-47 (64)
52 COG0713 NuoK NADH:ubiquinone o 39.7 1E+02 0.0023 23.3 5.5 76 17-97 8-86 (100)
53 PF06195 DUF996: Protein of un 38.6 1.8E+02 0.0038 23.4 7.2 18 16-33 2-19 (139)
54 PF13903 Claudin_2: PMP-22/EMP 37.2 1.4E+02 0.0031 23.7 6.7 29 45-73 74-103 (172)
55 KOG2443 Uncharacterized conser 37.1 38 0.00081 31.5 3.3 18 250-267 213-230 (362)
56 PF13127 DUF3955: Protein of u 34.9 1.5E+02 0.0033 20.4 6.3 46 11-58 5-53 (63)
57 PF15048 OSTbeta: Organic solu 32.9 56 0.0012 25.8 3.3 25 6-30 36-60 (125)
58 PF11127 DUF2892: Protein of u 32.5 85 0.0019 21.4 3.9 20 45-64 36-55 (66)
59 KOG4753 Predicted membrane pro 31.9 30 0.00066 27.1 1.6 14 44-57 86-99 (124)
60 PRK07946 putative monovalent c 31.3 65 0.0014 26.7 3.6 46 12-58 3-49 (163)
61 PF07062 Clc-like: Clc-like; 30.5 1.4E+02 0.003 25.9 5.7 20 9-28 3-22 (211)
62 PF11239 DUF3040: Protein of u 30.1 1.3E+02 0.0029 21.5 4.8 12 17-28 49-60 (82)
63 PF09680 Tiny_TM_bacill: Prote 29.6 50 0.0011 18.2 1.7 14 76-89 7-20 (24)
64 PF11384 DUF3188: Protein of u 28.3 66 0.0014 21.1 2.5 21 39-59 22-42 (49)
65 PF07846 Metallothio_Cad: Meta 27.9 42 0.0009 17.7 1.2 6 144-149 2-7 (21)
66 PRK10209 acid-resistance membr 27.3 3.6E+02 0.0078 22.6 7.7 48 15-66 23-71 (190)
67 PF13314 DUF4083: Domain of un 27.2 1.3E+02 0.0027 20.5 3.7 22 223-245 10-31 (58)
68 PF13706 PepSY_TM_3: PepSY-ass 27.1 85 0.0018 19.0 2.8 21 45-65 12-32 (37)
69 PF09925 DUF2157: Predicted me 26.6 3.3E+02 0.0071 21.6 8.2 23 11-33 31-53 (145)
70 TIGR01732 tiny_TM_bacill conse 26.6 70 0.0015 18.1 2.0 13 77-89 10-22 (26)
71 PRK05715 NADH:ubiquinone oxido 26.1 2.8E+02 0.006 20.6 6.8 73 17-94 8-81 (100)
72 PF05478 Prominin: Prominin; 25.9 90 0.002 32.6 4.4 35 69-103 137-171 (806)
73 PF15345 TMEM51: Transmembrane 25.8 1E+02 0.0022 27.1 4.0 14 45-58 64-77 (233)
74 COG1971 Predicted membrane pro 25.7 3.4E+02 0.0073 23.2 7.0 43 45-88 139-181 (190)
75 MTH00192 ND4L NADH dehydrogena 25.4 2.6E+02 0.0057 20.8 5.8 74 16-94 5-80 (99)
76 PF04854 DUF624: Protein of un 25.4 66 0.0014 22.5 2.4 20 9-28 1-23 (77)
77 PF12805 FUSC-like: FUSC-like 25.4 2.1E+02 0.0045 25.6 6.2 17 46-62 28-44 (284)
78 PF02932 Neur_chan_memb: Neuro 24.7 2E+02 0.0043 22.9 5.6 32 64-95 51-82 (237)
79 PRK02935 hypothetical protein; 24.4 3.3E+02 0.0072 20.9 6.2 30 42-76 16-45 (110)
80 TIGR02046 sdhC_b558_fam succin 24.2 3.1E+02 0.0068 23.6 6.8 52 206-257 38-89 (214)
81 PF05454 DAG1: Dystroglycan (D 23.7 26 0.00057 31.9 0.0 25 221-245 150-174 (290)
82 PF14340 DUF4395: Domain of un 23.5 1.3E+02 0.0028 23.9 4.0 31 216-246 99-130 (131)
83 PF01102 Glycophorin_A: Glycop 23.2 1.5E+02 0.0033 23.4 4.2 13 235-247 83-95 (122)
84 PF11023 DUF2614: Protein of u 23.1 2.9E+02 0.0064 21.4 5.6 32 42-78 15-46 (114)
85 MTH00180 ND4L NADH dehydrogena 23.0 3.3E+02 0.0071 20.3 6.1 75 16-95 5-81 (99)
86 PF03142 Chitin_synth_2: Chiti 22.6 4.1E+02 0.009 26.4 8.0 87 10-99 399-487 (527)
87 PF09972 DUF2207: Predicted me 22.4 2E+02 0.0043 27.5 5.9 16 45-60 400-415 (511)
88 PF15471 TMEM171: Transmembran 22.4 1E+02 0.0022 27.8 3.4 23 9-31 111-133 (319)
89 PF13572 DUF4134: Domain of un 22.4 2.7E+02 0.0058 21.0 5.3 42 45-86 47-93 (98)
90 MTH00001 ND4L NADH dehydrogena 22.2 3E+02 0.0065 20.5 5.6 73 17-94 6-80 (99)
91 KOG3950 Gamma/delta sarcoglyca 22.1 1.3E+02 0.0028 26.8 3.8 26 69-94 35-60 (292)
92 PRK08389 putative monovalent c 21.5 3.8E+02 0.0083 20.6 6.4 77 15-91 4-92 (114)
93 KOG4812 Golgi-associated prote 20.9 2.6E+02 0.0056 24.9 5.5 26 44-69 228-253 (262)
94 PF06168 DUF981: Protein of un 20.7 5.4E+02 0.012 22.0 9.1 44 15-58 44-90 (191)
95 PF15471 TMEM171: Transmembran 20.3 96 0.0021 28.0 2.8 24 8-31 23-46 (319)
96 PF13179 DUF4006: Family of un 20.1 1.5E+02 0.0032 20.8 3.1 18 45-62 17-34 (66)
No 1
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=100.00 E-value=5.8e-41 Score=295.61 Aligned_cols=218 Identities=17% Similarity=0.341 Sum_probs=177.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhheeec-c--ccchh--hcchh--HHHHHHHHHHHHHHHHHHHhcCcchhHHHHH
Q 023538 3 RFSNTVIGFLNLFTLLASIPIIGAGLWMARS-S--TTCES--FLQTP--LLVIGFVVLIISLAGFIGACFNVAWALWVYL 75 (281)
Q Consensus 3 r~~k~~L~~~N~lf~l~G~~ll~~Giw~~~~-~--~~~~~--~~~~~--li~iG~v~~~vs~lGc~Ga~~es~~lL~~Y~ 75 (281)
+++||++|++|+++|++|++++++|+|++.+ . ++..+ ++..+ ++++|++++++|++||+||.|||+|+|.+|+
T Consensus 7 ~~~K~~lf~~N~~~~l~G~~ll~~giw~~~~~~~~~~~~~~~~~~~~~ili~~G~v~~~v~flGc~Ga~~es~~lL~~y~ 86 (237)
T KOG3882|consen 7 SCLKYLLFLLNLLFWLLGLLLLAVGIWLLADKGFLSSLLESDFLVPAYILIAVGGVVFLVGFLGCCGALRESRCLLLSYF 86 (237)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhheeEeccchhhccccchhcchhhhhhhhHHHHHHHHhhhhhhHhhhHHHHHHHH
Confidence 6899999999999999999999999999998 3 22111 22333 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhheecCCCcccc-c--CccccccccCCCchhhhccCCCccchHHHHhccccCccccCcccccc
Q 023538 76 VVMLFLIATLMALTIFGFVVTSRGGGVQV-P--GRVYKEYHLQDYSPWLRNRVKDPNYWSTIRSCLLGSKTCAKLALWTP 152 (281)
Q Consensus 76 ~lL~vl~i~ei~~~i~~~~~~~~i~~~~~-~--~~~~~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~g~~~ 152 (281)
+++++++++|++++++++++++++++.+. + ++.++.|.+++ + .+++||.+|+ +++|||++| |
T Consensus 87 ~~l~l~~i~e~~~~i~~~~~~~~l~~~~~~~~~~~~~~~y~~~~-------~--~~~~~d~~Q~----~~~CCG~~~--~ 151 (237)
T KOG3882|consen 87 ILLLLLFIAELAAGILAFVFRDSLRDELEEQLLKSIWNNYSSDP-------D--LGEAWDKLQR----ELKCCGVNG--Y 151 (237)
T ss_pred HHHHHHHHHHHHHHHHhheeHHHHHHHHHHHHHHHHHHHhCCCc-------c--HHHHHHHHHH----hccCCcCCC--c
Confidence 99999999999999999999999988876 3 44455554443 1 2368999999 999999999 9
Q ss_pred cccccccccccCCCcCCCCCCCCCCCCCCCCCCCccccCCCCCceeeeCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023538 153 LDYLERDMTPIQSGCCKPPTSCNYNMPTMAQDPDCYRWNNAPTLLCYECDSCKAGVLEDVRRDWHKLSVLNIVMLVVLIG 232 (281)
Q Consensus 153 ~Dw~~~~~~~vP~SCC~~~~~C~~~~~~~~~~~~C~~~~~~~~~gc~~~~GC~~~l~~~l~~~~~~i~~~~i~v~~lqi~ 232 (281)
+||.+.+...+|+|||++.... .+... .+. ..++ +||.+++.+++++++..+++++++++++|++
T Consensus 152 ~~~~~~~~~~vP~SCC~~~~~~-----------~~~~~--~~~-~~~~-~GC~~~~~~~~~~~~~~i~~~~~~i~~~~~~ 216 (237)
T KOG3882|consen 152 SDYFNCSSNNVPPSCCKRTRRQ-----------KFPQD--VPD-NIYT-EGCLEKLSSWLESNLLIIGGVGLGIAVLELL 216 (237)
T ss_pred hHHhcCCCCCCCcccCCCcccc-----------ccccc--chh-hhhc-cccHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9998765323999999861110 00000 011 1222 8888999999999999999999999999999
Q ss_pred HHHHHHHHhhhhccccCC
Q 023538 233 IYSIGCCAFQNTRRAQTD 250 (281)
Q Consensus 233 ~~~~a~~l~~~~~~~~~~ 250 (281)
++++|+++.+.+++++..
T Consensus 217 ~~~~a~~l~~~i~~~~~~ 234 (237)
T KOG3882|consen 217 GMILACCLANAIRNQRDR 234 (237)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 999999999999877554
No 2
>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []. CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.
Probab=99.93 E-value=4.5e-28 Score=207.58 Aligned_cols=211 Identities=22% Similarity=0.420 Sum_probs=43.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhheeec-c-cc-c-hh---hcchhHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHH
Q 023538 4 FSNTVIGFLNLFTLLASIPIIGAGLWMARS-S-TT-C-ES---FLQTPLLVIGFVVLIISLAGFIGACFNVAWALWVYLV 76 (281)
Q Consensus 4 ~~k~~L~~~N~lf~l~G~~ll~~Giw~~~~-~-~~-~-~~---~~~~~li~iG~v~~~vs~lGc~Ga~~es~~lL~~Y~~ 76 (281)
|+|++++++|++++++|++++++|+|+... + .+ . .. .....++++|+++++++++|++|+.++|++++.+|.+
T Consensus 1 c~k~~l~~~n~l~~l~g~~li~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~~~~~~~~~G~~~~~~~~~~~l~~y~~ 80 (221)
T PF00335_consen 1 CLKYILFFLNVLFLLLGLALIGVGIWLLVNNQYLSEFSSSFISYVIIILIFIGIFILIISFLGCIGACRKNRCLLIIYII 80 (221)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccc
Confidence 689999999999999999999999999432 2 11 1 11 1122277799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhheecCCCcccccCc---cccccccCCCchhhhccCCCccchHHHHhccccCccccCccccccc
Q 023538 77 VMLFLIATLMALTIFGFVVTSRGGGVQVPGR---VYKEYHLQDYSPWLRNRVKDPNYWSTIRSCLLGSKTCAKLALWTPL 153 (281)
Q Consensus 77 lL~vl~i~ei~~~i~~~~~~~~i~~~~~~~~---~~~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~g~~~~ 153 (281)
++++++++|++++++++.+++++.+...+.. ..+.+.. +...++.||.+|+ +++|||.++ ++
T Consensus 81 ~~~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~iq~----~~~CCG~~~--~~ 145 (221)
T PF00335_consen 81 LLILLFVLELVVGIVAFSYRDQLNSSLKDGLSLRCMKSYNS---------NESFSEAWDNIQE----KFECCGVNS--PD 145 (221)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHSSTT----------CHHHHHHHHHHH----HHT--SSTT--CH
T ss_pred chhhHHHHHHHHHHhhhhccccccccccccccchhhhcccc---------ccchhhheecccc----cccccCCCC--Cc
Confidence 9999999999999999999987766543210 0111111 2224678999999 999999999 99
Q ss_pred ccccccccccCCCcCCCCCCCCCCCCCCCCCCCccccCCCCCceeeeCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023538 154 DYLERDMTPIQSGCCKPPTSCNYNMPTMAQDPDCYRWNNAPTLLCYECDSCKAGVLEDVRRDWHKLSVLNIVMLVVLIGI 233 (281)
Q Consensus 154 Dw~~~~~~~vP~SCC~~~~~C~~~~~~~~~~~~C~~~~~~~~~gc~~~~GC~~~l~~~l~~~~~~i~~~~i~v~~lqi~~ 233 (281)
||...... .|.+... +..+. ...+++. + .....+||.+++.++++++...+++++++++++|+++
T Consensus 146 d~~~~~~~-~~~~~~~-~~~~~-------~~~~~~~----~--~~~~~~gC~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (221)
T PF00335_consen 146 DWFTSKWS-SCSSPDS-CPDCQ-------CPDDCSS----E--NSIYTRGCYDKLREYLRSYLKYIGIVSLAILVLQLIG 210 (221)
T ss_dssp HHHHHHHH-T----------TC-------S-TTCCC----C--HCCTST-HHHHHHHHHCT-------------------
T ss_pred cccccccc-ccccccc-ccccc-------ccccccc----c--ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99764321 1111100 00000 0000110 1 1111289999999999999999999999999999999
Q ss_pred HHHHHHHhhhh
Q 023538 234 YSIGCCAFQNT 244 (281)
Q Consensus 234 ~~~a~~l~~~~ 244 (281)
+++|+++.|++
T Consensus 211 ~~~a~~l~~~~ 221 (221)
T PF00335_consen 211 IILACCLCRHI 221 (221)
T ss_dssp -----------
T ss_pred HHHHHHHHhCC
Confidence 99999998864
No 3
>cd03163 TM4SF8_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF8_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 8 (TM4SF8) or Tspan-3 and related proteins. Tspan-3 has been reported to form a complex with integrin beta1 and OSP/claudin-11, which may be involved in oligodendrocyte proliferation and migration.
Probab=99.54 E-value=1.3e-15 Score=117.45 Aligned_cols=95 Identities=18% Similarity=0.389 Sum_probs=63.7
Q ss_pred hhheecCCCccccc--CccccccccCCCchhhhccCCCccchHHHHhccccCccccCccccccccccccc------cccc
Q 023538 92 GFVVTSRGGGVQVP--GRVYKEYHLQDYSPWLRNRVKDPNYWSTIRSCLLGSKTCAKLALWTPLDYLERD------MTPI 163 (281)
Q Consensus 92 ~~~~~~~i~~~~~~--~~~~~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~g~~~~Dw~~~~------~~~v 163 (281)
++++++++.+.+.+ .+++++|..++ ..+.+||.+|+ +|+|||+++ |+||.++. ...|
T Consensus 1 ~~v~~~~v~~~~~~~~~~~~~~y~~~~---------~~~~~~d~iQ~----~l~CCG~~~--~~Dw~~~~~~~~~~~~~v 65 (105)
T cd03163 1 GYVYRAKVEDELNPSIDKVFNKYNGTN---------AESRAVDYLQR----QLQCCGIHN--YTDWENTPWFKESKNNSV 65 (105)
T ss_pred CcccHHHHHHHHHHHHHHHHHHhcCCc---------HHHHHHHHHHH----hCcccCCCC--HHHHhhchhhhcCCCCcc
Confidence 35777777766654 44566654322 24679999999 999999999 99997531 2469
Q ss_pred CCCcCCCC-CCCCCCCCCCCCCCCccccCCCCCceeeeCcchHHHHHHHHHHHH
Q 023538 164 QSGCCKPP-TSCNYNMPTMAQDPDCYRWNNAPTLLCYECDSCKAGVLEDVRRDW 216 (281)
Q Consensus 164 P~SCC~~~-~~C~~~~~~~~~~~~C~~~~~~~~~gc~~~~GC~~~l~~~l~~~~ 216 (281)
|+|||..+ ..|+.. .......+. +||.+++.+++++++
T Consensus 66 P~SCC~~~~~~C~~~-------------~~~~~~i~~--~GC~~~~~~~~~~~~ 104 (105)
T cd03163 66 PLSCCKETFTSCTGS-------------LTQPKDLYQ--EGCEAKLVKKLQEVM 104 (105)
T ss_pred CcCccCCCCCCcccC-------------CCCCCchhh--hccHHHHHHHHHHHh
Confidence 99999643 245321 000111222 799999999999886
No 4
>cd03160 CD37_CD82_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD37_CD82_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD37 is a leukocyte-specific protein, and its restricted expression pattern suggests a role in the immune system. A regulatory role in T-cell proliferation has been suggested. CD82 is a metastasis suppressor implicated in biological processes ranging from fusion, adhesion, and migration to apoptos
Probab=99.50 E-value=3.7e-15 Score=117.20 Aligned_cols=107 Identities=10% Similarity=0.200 Sum_probs=66.8
Q ss_pred hhheecCCCccccc--CccccccccCCCchhhhccCCCccchHHHHhccccCccccCccccccccccccc------cccc
Q 023538 92 GFVVTSRGGGVQVP--GRVYKEYHLQDYSPWLRNRVKDPNYWSTIRSCLLGSKTCAKLALWTPLDYLERD------MTPI 163 (281)
Q Consensus 92 ~~~~~~~i~~~~~~--~~~~~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~g~~~~Dw~~~~------~~~v 163 (281)
+|++++++++.+.+ .+.+++|+.++ .+...+.+||.+|+ +|+|||+++ |+||.+.. ...|
T Consensus 1 ~~v~r~~v~~~i~~~l~~~i~~y~~~~------~~~~~~~~~d~iQ~----~l~CCG~~~--~~Dw~~~~~~~~~~~~~v 68 (117)
T cd03160 1 IYFQRDKLKQEMGDIVEKVIQNYGGNP------ENKTAEEAWDYVQF----QLQCCGWTG--PQDWTDNSLIKNSSEPLY 68 (117)
T ss_pred CceeHHHHHHHHHHHHHHHHHhcCCCC------CCchHHHHHHHHHh----hCcccCCCC--chhHHhchhccCCCCCCC
Confidence 36778877776655 45566665421 01235778999999 999999999 99997431 1269
Q ss_pred CCCcCCCCCC-CCCCCCCCCCCCCccccCCCCCceeeeCcchHHHHHHHHHHHH
Q 023538 164 QSGCCKPPTS-CNYNMPTMAQDPDCYRWNNAPTLLCYECDSCKAGVLEDVRRDW 216 (281)
Q Consensus 164 P~SCC~~~~~-C~~~~~~~~~~~~C~~~~~~~~~gc~~~~GC~~~l~~~l~~~~ 216 (281)
|+|||.+... ++.. .....|...... ....|. +||.+++.+++++++
T Consensus 69 P~SCC~~~~~~~~~~----~~~~~C~~~~~~-~~~iy~-~GC~~~l~~~~~~n~ 116 (117)
T cd03160 69 PCSCCNSSATADSPR----PSKGFCEAPASL-DWPVYQ-EGCMEKLQSWLNENL 116 (117)
T ss_pred CHhhhcCCccccccC----CCCcccCCCCcc-ccchHH-HhhHHHHHHHHHHhc
Confidence 9999964321 1110 012235322100 111232 799999999999886
No 5
>cd03161 TM4SF2_6_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF2_6_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 2 (TM4SF2) or Tspan-7, transmembrane 4 superfamily 6 (TM4SF6) or Tspan-6, and related proteins. TM4SF2 has been identified as involved in some forms of X-linked mental retardation.
Probab=99.50 E-value=5.6e-15 Score=113.47 Aligned_cols=99 Identities=19% Similarity=0.326 Sum_probs=64.1
Q ss_pred hheecCCCccccc--CccccccccCCCchhhhccCCCccchHHHHhccccCccccCccccccccccccc---ccccCCCc
Q 023538 93 FVVTSRGGGVQVP--GRVYKEYHLQDYSPWLRNRVKDPNYWSTIRSCLLGSKTCAKLALWTPLDYLERD---MTPIQSGC 167 (281)
Q Consensus 93 ~~~~~~i~~~~~~--~~~~~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~g~~~~Dw~~~~---~~~vP~SC 167 (281)
|++|+++.+.+.+ .+++++|..++ ..+.+||.+|+ +|+|||+++ |+||.+.. ...||.||
T Consensus 1 ~v~r~~i~~~l~~~l~~~i~~y~~~~---------~~~~~~d~iQ~----~l~CCG~~~--~~Dw~~~~~~~~~~vP~SC 65 (104)
T cd03161 1 FVFRHEIKGTFLRTYNEAVSNYNGDD---------ERSDAVDTVQR----TLHCCGVEN--YTDWLNSPYFLEKGIPLSC 65 (104)
T ss_pred CCchHHHHHHHHHHHHHHHHHhcCCh---------hHHHHHHHHHh----cCcCcCCCC--hhhhhccccccCCCcCccc
Confidence 3567777666554 45566665432 24668999999 999999999 99997642 13699999
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCCCCCceeeeCcchHHHHHHHHHHHH
Q 023538 168 CKPPTSCNYNMPTMAQDPDCYRWNNAPTLLCYECDSCKAGVLEDVRRDW 216 (281)
Q Consensus 168 C~~~~~C~~~~~~~~~~~~C~~~~~~~~~gc~~~~GC~~~l~~~l~~~~ 216 (281)
|.....|+... .... ..... ..|. +||.+++.+++++++
T Consensus 66 C~~~~~C~~~~---~~~~-----~~~~~-~i~~-~GC~~~~~~~~~~n~ 104 (104)
T cd03161 66 CKNRSDCSPQD---LKNL-----TKAAT-KVYQ-QGCFTLVTSFMEANM 104 (104)
T ss_pred ccCCCCCCccc---cccc-----ccccc-ccch-hccHHHHHHHHHHhC
Confidence 97544564321 0000 00011 1232 799999999999874
No 6
>cd03164 CD53_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD53_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD53 is a tetraspanin of the lymphoid-myeloid lineage and has been implicated in apoptosis protection. It associates with integrin alpha4beta1. Some of the cellular responses modulated by CD53 may be mediated by JNK activation and/or via the AKT pathway.
Probab=99.48 E-value=8.6e-15 Score=108.86 Aligned_cols=84 Identities=15% Similarity=0.320 Sum_probs=61.1
Q ss_pred hheecCCCccccc--CccccccccCCCchhhhccCCCccchHHHHhccccCccccCcccccccccccccccccCCCcCCC
Q 023538 93 FVVTSRGGGVQVP--GRVYKEYHLQDYSPWLRNRVKDPNYWSTIRSCLLGSKTCAKLALWTPLDYLERDMTPIQSGCCKP 170 (281)
Q Consensus 93 ~~~~~~i~~~~~~--~~~~~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~g~~~~Dw~~~~~~~vP~SCC~~ 170 (281)
|++++++.+.+.+ ++++++|..++ ..+.+||.+|+ +|+|||++| |+||. ..+|+|||..
T Consensus 1 ~v~~~~v~~~i~~~~~~~~~~y~~~~---------~~~~~~d~iQ~----~l~CCG~~~--~~Dw~----~~vP~SCC~~ 61 (86)
T cd03164 1 FVYEKKLNNYVKEGLTDSLEQYHKDN---------NTSEAWDMIQS----NLQCCGING--TTDWG----SGVPSSCCSS 61 (86)
T ss_pred CCchHHHHHHHHHHHHHHHHHhcCCc---------cHHHHHHHHHH----HhcCCCCCC--hhhhC----CCCChhhcCC
Confidence 3566666665544 45666665322 13678999999 999999999 99995 3699999952
Q ss_pred CCCCCCCCCCCCCCCCccccCCCCCceeeeCcchHHHHHHHHHHHHHHHH
Q 023538 171 PTSCNYNMPTMAQDPDCYRWNNAPTLLCYECDSCKAGVLEDVRRDWHKLS 220 (281)
Q Consensus 171 ~~~C~~~~~~~~~~~~C~~~~~~~~~gc~~~~GC~~~l~~~l~~~~~~i~ 220 (281)
. | . ... +||.+++.+++++++.+++
T Consensus 62 ~--~-------------~--------~~~--~GC~~~~~~~~~~~~~iig 86 (86)
T cd03164 62 D--T-------------E--------YKV--EGCYKKLKNWFESNFLYTG 86 (86)
T ss_pred C--C-------------c--------ccc--ccHHHHHHHHHHHHHHHhC
Confidence 1 1 0 112 7888999999999998764
No 7
>cd03154 TM4SF3_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF3_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 3 (TM4SF3) or D6.1a and related proteins. D6.1a associates with alpha6beta4 integrin and supports cell motility, it has been ascribed a role in tumor progression and metastasis.
Probab=99.47 E-value=5.2e-15 Score=113.07 Aligned_cols=97 Identities=10% Similarity=0.096 Sum_probs=65.9
Q ss_pred HHHhhheecCCCccccc--CccccccccCCCchhhhccCCCccchHHHHhccccCccccCcccccccccccccccccCCC
Q 023538 89 TIFGFVVTSRGGGVQVP--GRVYKEYHLQDYSPWLRNRVKDPNYWSTIRSCLLGSKTCAKLALWTPLDYLERDMTPIQSG 166 (281)
Q Consensus 89 ~i~~~~~~~~i~~~~~~--~~~~~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~g~~~~Dw~~~~~~~vP~S 166 (281)
||++|++++++.+.+.+ .+++++|+.++ .+.+.+||.+|+ +|+|||+++ +.||.. ..||+|
T Consensus 1 gi~~~v~r~~i~~~i~~~~~~~i~~y~~~~--------~~~~~~~d~lQ~----~l~CCG~~~--~~d~~~---~~vP~S 63 (100)
T cd03154 1 GIVGAVYKPKIENELKEKNTKLLSLLGQNA--------KSVKKSLEKFQK----ELKCCGLVN--GADDWG---NDIPAS 63 (100)
T ss_pred CEEEEEeHHHHHHHHHHHHHHHHHHcCCCh--------HHHHHHHHHHHH----cCCCCCCCC--chhhcc---CCCCCC
Confidence 47789999998877765 55676664321 124678999999 999999999 888864 369999
Q ss_pred cCC-CCCCCCCCCCCCCCCCCccccCCCCCceeeeCcchHHHHHHHHHHHH
Q 023538 167 CCK-PPTSCNYNMPTMAQDPDCYRWNNAPTLLCYECDSCKAGVLEDVRRDW 216 (281)
Q Consensus 167 CC~-~~~~C~~~~~~~~~~~~C~~~~~~~~~gc~~~~GC~~~l~~~l~~~~ 216 (281)
||+ .+..|... .... ...... +||.+++.+++++++
T Consensus 64 Ccc~~~~~c~~~----------~~~~--~~~~~~--~GC~~~i~~~~~~~~ 100 (100)
T cd03154 64 CNCTTTQSDCVV----------AYYG--GSNVYK--EPCISKIKDFLKKNL 100 (100)
T ss_pred CcCCCCCCCccc----------ccCC--CcCccc--cccHHHHHHHHHhhC
Confidence 964 33333210 0000 011223 788899999999874
No 8
>cd03165 NET-5_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This sub-family contains proteins similar to human tetraspan NET-5.
Probab=99.47 E-value=4.1e-15 Score=113.09 Aligned_cols=93 Identities=14% Similarity=0.212 Sum_probs=61.8
Q ss_pred heecCCCccccc--CccccccccCCCchhhhccCCCccchHHHHhccccCccccCccccccccccccc-ccccCCCcCCC
Q 023538 94 VVTSRGGGVQVP--GRVYKEYHLQDYSPWLRNRVKDPNYWSTIRSCLLGSKTCAKLALWTPLDYLERD-MTPIQSGCCKP 170 (281)
Q Consensus 94 ~~~~~i~~~~~~--~~~~~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~g~~~~Dw~~~~-~~~vP~SCC~~ 170 (281)
++++++.+.+.+ .+++++|..++ +...+.+||.+|+ +|+|||+++ |+||.+.. ...||+|||..
T Consensus 2 v~r~~~~~~i~~~l~~~~~~y~~~~-------~~~~~~~~d~~Q~----~l~CCG~~~--~~Dw~~~~~~~~vP~SCC~~ 68 (98)
T cd03165 2 VFREKVDLTAKDDLKEGLELYGTRN-------NRGLTNAWDITQT----EFRCCGVTN--YTDWYEVLGENRVPDSCCQE 68 (98)
T ss_pred ChHHHHHHHHHHHHHHHHHHhCCCC-------cHHHHHHHHHHHH----hCcCcCCCC--hhHHHHhcCCCCCCHhhcCC
Confidence 456666655544 45666665432 1225678999999 999999999 99997531 24699999964
Q ss_pred C-CCCCCCCCCCCCCCCccccCCCCCceeeeCcchHHHHHHHHHHHH
Q 023538 171 P-TSCNYNMPTMAQDPDCYRWNNAPTLLCYECDSCKAGVLEDVRRDW 216 (281)
Q Consensus 171 ~-~~C~~~~~~~~~~~~C~~~~~~~~~gc~~~~GC~~~l~~~l~~~~ 216 (281)
. ..|+. .. +...+. +||.+++.+++++++
T Consensus 69 ~~~~C~~-------------~~--~~~~~~--~GC~~~~~~~~~~~~ 98 (98)
T cd03165 69 DSQDCGR-------------NP--TELWWK--TGCYEKVQQWLVDNL 98 (98)
T ss_pred Ccccccc-------------CC--ccchHH--hhhHHHHHHHHHhcC
Confidence 2 23431 11 011223 899999999999863
No 9
>cd03166 CD63_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD63 family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD63 is present in platelets, neutrophils, and endothelial cells, amongst others. In platelets it associates with the integrin alphaIIBbeta3 and may modulate alphaIIbbeta3-dependent cytoskeletal reorganization.
Probab=99.46 E-value=8e-15 Score=111.81 Aligned_cols=93 Identities=10% Similarity=0.208 Sum_probs=62.0
Q ss_pred hheecCCCccccc--CccccccccCCCchhhhccCCCccchHHHHhccccCccccCccccccccccccc---ccccCCCc
Q 023538 93 FVVTSRGGGVQVP--GRVYKEYHLQDYSPWLRNRVKDPNYWSTIRSCLLGSKTCAKLALWTPLDYLERD---MTPIQSGC 167 (281)
Q Consensus 93 ~~~~~~i~~~~~~--~~~~~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~g~~~~Dw~~~~---~~~vP~SC 167 (281)
|++++++.+.+.+ .++++.|..+. ..+.+||.+|+ +|+|||+++ |+||.... ...||+||
T Consensus 1 ~v~r~~v~~~i~~~l~~~~~~y~~~~---------~~~~~~d~iQ~----~l~CCG~~~--~~Dw~~~~~~~~~~vP~SC 65 (99)
T cd03166 1 YVFRDKVMSEFNDSFNQMISNYNKTN---------DFRKILDRMQK----DLKCCGANN--YTDWENIPSLDTDSVPDSC 65 (99)
T ss_pred CCchHHHHHHHHHHHHHHHHHcCCCH---------HHHHHHHHHHH----HhcccCCCC--hhhhhcccCCCCCCCCcCc
Confidence 3567776666654 45566664321 24678999999 999999999 99997531 24699999
Q ss_pred CCCC-CCCCCCCCCCCCCCCccccCCCCCceeeeCcchHHHHHHHHHHHH
Q 023538 168 CKPP-TSCNYNMPTMAQDPDCYRWNNAPTLLCYECDSCKAGVLEDVRRDW 216 (281)
Q Consensus 168 C~~~-~~C~~~~~~~~~~~~C~~~~~~~~~gc~~~~GC~~~l~~~l~~~~ 216 (281)
|... ..|+.. . ... ..|. +||.+++.+++++++
T Consensus 66 C~~~~~~C~~~-------------~-~~~-~~y~-~GC~~~~~~~~~~~~ 99 (99)
T cd03166 66 CINVTKGCGIN-------------F-DEK-VIHL-EGCVTKIEGWLKKNI 99 (99)
T ss_pred cCcCCCCcccC-------------C-Ccc-chHH-hcCHHHHHHHHHHhC
Confidence 9642 334311 0 011 1232 788999999999874
No 10
>cd03155 CD151_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD151_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD151strongly associates with integrins, especially alpha3beta1, alpha6beta1, alpha7beta1, and alpha6beta4; it may play roles in cell-cell adhesion, cell migration, platelet aggregation, and angiogenesis. For example, CD151 is is involved in regulation of migration of neutrophils, endothelial cells, and
Probab=99.46 E-value=1.2e-14 Score=112.89 Aligned_cols=99 Identities=12% Similarity=0.107 Sum_probs=61.3
Q ss_pred hheecCCCccccc--CccccccccCCCchhhhccCCCccchHHHHhccccCccccCccccccccccccc--------ccc
Q 023538 93 FVVTSRGGGVQVP--GRVYKEYHLQDYSPWLRNRVKDPNYWSTIRSCLLGSKTCAKLALWTPLDYLERD--------MTP 162 (281)
Q Consensus 93 ~~~~~~i~~~~~~--~~~~~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~g~~~~Dw~~~~--------~~~ 162 (281)
|++++++.+.+.+ ++++++|+..+. +...+.+||.+|+ +|+|||+++ |.||.++. ...
T Consensus 1 ~v~~~~~~~~i~~~l~~~i~~~y~~~~------~~~~~~~~d~iQ~----~l~CCG~~~--~~Dw~~~~~~~~~~~~~~~ 68 (110)
T cd03155 1 YTYYQQLEDELKESLKRTMQENYGQSG------EEALTLTVDELQQ----EFKCCGSNN--YTDWQDSEWINSNEANGRL 68 (110)
T ss_pred CccHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHHHHHHH----hCcCcCCCC--hhhhhhccccccCCCCCCC
Confidence 3566666666544 455665322210 1235678999999 999999999 99997642 136
Q ss_pred cCCCcCCCC-CCCCCCCCCCCCCCCccccCCCCCceeeeCcchHHHHHHHHHHHH
Q 023538 163 IQSGCCKPP-TSCNYNMPTMAQDPDCYRWNNAPTLLCYECDSCKAGVLEDVRRDW 216 (281)
Q Consensus 163 vP~SCC~~~-~~C~~~~~~~~~~~~C~~~~~~~~~gc~~~~GC~~~l~~~l~~~~ 216 (281)
||.|||... ..|+.. .. .+.......+||.+++.+++++++
T Consensus 69 vP~SCC~~~~~~c~~~-----------~~--~~~~~~~~~~GC~~~~~~~~~~~~ 110 (110)
T cd03155 69 VPDSCCKTVVDRCGCL-----------RD--HPSNIYKVEGGCIPKLEDFLYDHL 110 (110)
T ss_pred CCccccCCCCCCcccc-----------cC--ChhccccccCChHHHHHHHHHHhC
Confidence 999999743 234210 00 001111111588899999999874
No 11
>cd03159 TM4SF9_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 9 (TM4SF9) or Tetraspanin-5 and related proteins. TM4SF9 is strongly expressed witin the central nervous system, and expression levels appear to correlate with differentiation status of particular neurons, hinting at a role in neuronal maturation.
Probab=99.45 E-value=1.1e-14 Score=115.33 Aligned_cols=100 Identities=14% Similarity=0.179 Sum_probs=62.8
Q ss_pred hheecCCCccccc--CccccccccCCCchhhhccCCCccchHHHHhccccCccccCccccccccccccc-----------
Q 023538 93 FVVTSRGGGVQVP--GRVYKEYHLQDYSPWLRNRVKDPNYWSTIRSCLLGSKTCAKLALWTPLDYLERD----------- 159 (281)
Q Consensus 93 ~~~~~~i~~~~~~--~~~~~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~g~~~~Dw~~~~----------- 159 (281)
|++++++.+.+.+ .+++++|..++ ..+.+||.+|+ +|+|||++| |+||..+.
T Consensus 1 ~v~r~~v~~~i~~~l~~~i~~y~~~~---------~~~~~~D~iQ~----~l~CCG~~~--~~DW~~~~~~~~~~~~~~~ 65 (121)
T cd03159 1 FVFKDWIKDQLTEFLNNNIRAYRDDI---------DLQNLIDFLQE----YWQCCGARG--PDDWNLNIYFNCTDSNPSR 65 (121)
T ss_pred CccHHHHHHHHHHHHHHHHHHhccCH---------HHHHHHHHHHH----hccCCCCCC--hHHhcccccccccCCCCCC
Confidence 4567777766655 55677765322 24679999999 999999999 99997421
Q ss_pred -ccccCCCcCCCC-------CCCCCCCCCCCCCCCccccCCCCCceeeeCcchHHHHHHHHHHHH
Q 023538 160 -MTPIQSGCCKPP-------TSCNYNMPTMAQDPDCYRWNNAPTLLCYECDSCKAGVLEDVRRDW 216 (281)
Q Consensus 160 -~~~vP~SCC~~~-------~~C~~~~~~~~~~~~C~~~~~~~~~gc~~~~GC~~~l~~~l~~~~ 216 (281)
...||.|||... ..|+... ...+ ...... ..|+ +||.+++.+++++++
T Consensus 66 ~~~~vP~SCC~~~~~~~~~~~~C~~~~---~~~~----~~~~~~-~i~~-~GC~~~l~~~~~~n~ 121 (121)
T cd03159 66 ERCGVPFSCCVKDPAEDVVNTQCGYDV---RKKP----ELELQH-HIHT-KGCVQAFEKWLQDNL 121 (121)
T ss_pred CCCCCCcccccCCcccccccCccCccc---cccc----cccccC-CchH-hhCHHHHHHHHHhcC
Confidence 124999999632 2353210 0000 000011 1232 799999999999874
No 12
>cd03158 penumbra_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), penumbra_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Human Penumbra exhibits growth-suppressive activity in vitro and has been associated with myeloid malignancies.
Probab=99.43 E-value=2.7e-14 Score=112.76 Aligned_cols=100 Identities=13% Similarity=0.204 Sum_probs=62.5
Q ss_pred hheecCCCccccc--CccccccccCCCchhhhccCCCccchHHHHhccccCccccCccccccccccccc----------c
Q 023538 93 FVVTSRGGGVQVP--GRVYKEYHLQDYSPWLRNRVKDPNYWSTIRSCLLGSKTCAKLALWTPLDYLERD----------M 160 (281)
Q Consensus 93 ~~~~~~i~~~~~~--~~~~~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~g~~~~Dw~~~~----------~ 160 (281)
|++++++.+.+.+ .++++.|+.+. ..+.+||.+|. +|+|||+++ |.||.+.. .
T Consensus 1 ~v~r~~v~~~i~~~l~~~i~~y~~~~---------~~~~~~d~lQ~----~l~CCG~~~--~~Dw~~~~~~~~~~~~~~~ 65 (119)
T cd03158 1 FIFSNQTIDLLEENIRKAIVHYYDDL---------DLQNIIDFVQK----EFKCCGGDD--YRDWSKNMYFNCSSPNPEA 65 (119)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHccCH---------HHHHHHHHHHH----HccCCCCCC--hhhcccccccccCCCCCcC
Confidence 3567776666654 45666664321 25778999999 999999999 99997421 1
Q ss_pred cccCCCcCCCCC-------CCCCCCCCCCCCCCccccCCCCCceeeeCcchHHHHHHHHHHHH
Q 023538 161 TPIQSGCCKPPT-------SCNYNMPTMAQDPDCYRWNNAPTLLCYECDSCKAGVLEDVRRDW 216 (281)
Q Consensus 161 ~~vP~SCC~~~~-------~C~~~~~~~~~~~~C~~~~~~~~~gc~~~~GC~~~l~~~l~~~~ 216 (281)
..||.|||.... .|+... ...... ......|. +||.+++.+++++|+
T Consensus 66 ~~vP~SCC~~~~~~~~~~~~C~~~~-------~~~~~~-~~~~~i~~-~GC~~~i~~~~~~n~ 119 (119)
T cd03158 66 CGVPYSCCIRAKDQEVINTMCGYGV-------QNLERL-EASKLIYT-RGCIDAVVLWIEDNL 119 (119)
T ss_pred CCcCcCcccCCCCccccccCcCCCc-------ccccch-hhcCcccc-cchHHHHHHHHHhhC
Confidence 259999997432 243210 000000 00112232 799999999999874
No 13
>cd03156 uroplakin_I_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Uroplakin Ia and Ib are components of the 16nm protein particles, which are packed hexagonally to form 2D crystals of asymmetric unit membranes, and cover the apical surface of mammalian urothelium, contributing to the urinay bladder's permeability barrier function. Uroplakins Ia and Ib are ma
Probab=99.43 E-value=1.7e-14 Score=112.39 Aligned_cols=101 Identities=14% Similarity=0.236 Sum_probs=62.9
Q ss_pred hhheecCCCccccc--CccccccccCCCchhhhccCCCccchHHHHhccccCccccCcccccccccccc---------cc
Q 023538 92 GFVVTSRGGGVQVP--GRVYKEYHLQDYSPWLRNRVKDPNYWSTIRSCLLGSKTCAKLALWTPLDYLER---------DM 160 (281)
Q Consensus 92 ~~~~~~~i~~~~~~--~~~~~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~g~~~~Dw~~~---------~~ 160 (281)
++++++++++.+.+ .+.+++|..++ ...+.+||.+|+ +|+|||++| |+||.++ ..
T Consensus 2 ~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~~~d~iQ~----~l~CCG~~~--~~Dw~~~~~~~~~~~~~~ 67 (114)
T cd03156 2 ALFFKKDLEDSFKNLLKNNYGNYNSTG--------DAITSTWNRVMI----ELKCCGVNG--PTDFVDSTSFFRQKNEPN 67 (114)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccccc--------hHHHHHHHHHHh----cccCcCCCC--cHHHHhhhHHhccCCCCC
Confidence 56777777666654 44555554321 125779999999 999999999 9999764 12
Q ss_pred cccCCCcCCCCCCCCCCCCCCCCCCCccccCCCCCceeeeCcchHHHHHHHHHHH
Q 023538 161 TPIQSGCCKPPTSCNYNMPTMAQDPDCYRWNNAPTLLCYECDSCKAGVLEDVRRD 215 (281)
Q Consensus 161 ~~vP~SCC~~~~~C~~~~~~~~~~~~C~~~~~~~~~gc~~~~GC~~~l~~~l~~~ 215 (281)
..||.|||..... ... .+ .|....... ...++ +||.+++.++++++
T Consensus 68 ~~vP~SCC~~~~~-~~~-----~~-~~~~~~~~~-~~~~~-~GC~~~l~~~~~~~ 113 (114)
T cd03156 68 SPYPESCCKRNSN-SQI-----VD-LDCPKLGSP-NSYNK-KGCYEKLSNPIERY 113 (114)
T ss_pred CcCCHHHcCcccc-ccc-----cc-ccCCCCCcc-hhhhh-cCchHHHHHHHHhc
Confidence 4799999974321 100 01 111000001 11222 78999999999886
No 14
>cd03167 oculospanin_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), oculospanin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contains sequences similar to oculospanin, which is found to be expressed in retinal pigment epithelium, iris, ciliary body, and retinal ganglion cells.
Probab=99.39 E-value=6.1e-14 Score=110.96 Aligned_cols=99 Identities=10% Similarity=0.139 Sum_probs=60.4
Q ss_pred heecCCCccccc--CccccccccCCCchhhhccCCCccchHHHHhccccCccccCcccccccccccccc----------c
Q 023538 94 VVTSRGGGVQVP--GRVYKEYHLQDYSPWLRNRVKDPNYWSTIRSCLLGSKTCAKLALWTPLDYLERDM----------T 161 (281)
Q Consensus 94 ~~~~~i~~~~~~--~~~~~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~g~~~~Dw~~~~~----------~ 161 (281)
++|+++++.+.+ .+++++|..++ ..+.+||.+|+ +|+|||+++ |+||..... .
T Consensus 2 ~~r~~v~~~i~~~l~~~i~~y~~~~---------~~~~~~d~iQ~----~l~CCG~~~--~~Dw~~~~~~~~~~~~~~~~ 66 (120)
T cd03167 2 ALWGPLQDGLEHTLRLAIAHYQDDP---------DLRFLIDQVQL----GLQCCGASS--YQDWQQNLYFNCSSPGVQAC 66 (120)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCh---------hHHHHHHHHHH----hccCCCCCC--hHHhcccccccCCCCCCCCC
Confidence 355666655544 45566664321 23568999999 999999999 999974311 2
Q ss_pred ccCCCcCCCC--------CCCCCCCCCCCCCCCccccCCCCCceeeeCcchHHHHHHHHHHHH
Q 023538 162 PIQSGCCKPP--------TSCNYNMPTMAQDPDCYRWNNAPTLLCYECDSCKAGVLEDVRRDW 216 (281)
Q Consensus 162 ~vP~SCC~~~--------~~C~~~~~~~~~~~~C~~~~~~~~~gc~~~~GC~~~l~~~l~~~~ 216 (281)
.||+|||..+ ..|+... .... ........|. +||.+++.+++++++
T Consensus 67 ~vP~SCC~~~~~~~~~~~~~C~~~~---~~~~-----~~~~~~~iy~-~GC~~~l~~~~~~n~ 120 (120)
T cd03167 67 SLPASCCIDPREDGAVVNDQCGFGA---LGLD-----EDAAQRVVHL-GGCGPPLRRWLRGNL 120 (120)
T ss_pred CCCcCccCCCccccccccCCCCCCc---cccc-----cchhcccchh-ccCHHHHHHHHHhcC
Confidence 5999999643 2354211 0000 0000011232 799999999999874
No 15
>cd03162 peripherin_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), peripherin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Peripherin, or RDS (retinal degradation slow) is a glycoprotein expressed in vertebrate photoreceptors, located at the rim of the disc membranes of the photoreceptor outer segments. RDS is thought to play a major role in folding and stacking of the discs. Mutations in RDS have been linked to her
Probab=99.37 E-value=8.9e-14 Score=112.73 Aligned_cols=109 Identities=16% Similarity=0.248 Sum_probs=65.1
Q ss_pred hheecCCCccccc--CccccccccCCCchhhhccCCCccchHHHHhccccCccccCcccccccccccc-----c------
Q 023538 93 FVVTSRGGGVQVP--GRVYKEYHLQDYSPWLRNRVKDPNYWSTIRSCLLGSKTCAKLALWTPLDYLER-----D------ 159 (281)
Q Consensus 93 ~~~~~~i~~~~~~--~~~~~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~g~~~~Dw~~~-----~------ 159 (281)
|++++++.+.+.+ +++++.|..+++.. +...+.+||.+|+ +|+|||++| |+||.+. .
T Consensus 1 fv~rd~l~~~L~~~L~~~i~~Y~~~~~~~----~~~~~~~~D~lQ~----~fkCCG~~~--y~DW~~~~w~~n~y~~~~~ 70 (143)
T cd03162 1 FIMRGSLEESLKTGLKNAMKFYKDTDTPG----RCFLKKTIDMLQI----EFQCCGNNG--YRDWFEIQWISNRYLDFSS 70 (143)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhcCCcccc----hhhHHHHHHHHHH----hccCCCCCC--hhhhhhhhhhcccccCCCc
Confidence 3556666665554 55677776543210 1124678999999 999999999 9999641 1
Q ss_pred ----------------ccccCCCcCCCC--CCCCCCCCCCCCCCCcc-ccCC-CCCceeeeCcchHHHHHHHHHHH
Q 023538 160 ----------------MTPIQSGCCKPP--TSCNYNMPTMAQDPDCY-RWNN-APTLLCYECDSCKAGVLEDVRRD 215 (281)
Q Consensus 160 ----------------~~~vP~SCC~~~--~~C~~~~~~~~~~~~C~-~~~~-~~~~gc~~~~GC~~~l~~~l~~~ 215 (281)
...||.|||.+. ..|.... . .+..+. .+.. ......++ +||.+++.+|+.+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~vP~SCc~~~~~~~C~~~~--~-~~~~a~~~~~~~~~~~~i~~-~GC~~~l~~~~~~~ 142 (143)
T cd03162 71 KEVKDRIKSNVDGRYLTDGVPFSCCNPSSPRPCIQHQ--I-TDNSAHYNYDYQTEELNLWT-RGCREALLEYYTSK 142 (143)
T ss_pred cchhhhhhcccccccccCCcCCcccCCCCCCchhhhc--c-cccccccccccCcccccchH-HHHHHHHHHHHHhc
Confidence 136999999753 3454321 0 111110 0000 11112232 89999999999864
No 16
>cd03157 TM4SF12_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF12_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This sub-family contains proteins similar to human transmembrane 4 superfamily member 12 (TM4SF12).
Probab=99.34 E-value=7.2e-13 Score=102.00 Aligned_cols=83 Identities=18% Similarity=0.359 Sum_probs=54.2
Q ss_pred CccccccccCCCchhhhccCCCccchHHHHhccccCccccCccccccccccccc-ccccCCCcCCCC-CCCCCCCCCCCC
Q 023538 106 GRVYKEYHLQDYSPWLRNRVKDPNYWSTIRSCLLGSKTCAKLALWTPLDYLERD-MTPIQSGCCKPP-TSCNYNMPTMAQ 183 (281)
Q Consensus 106 ~~~~~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~g~~~~Dw~~~~-~~~vP~SCC~~~-~~C~~~~~~~~~ 183 (281)
.++|.+|+.++ ....+.+||.+|+ +|+|||+++ |+||.+.. ...||.|||... ..|+... .
T Consensus 17 ~~~~~~Y~~~~-------~~~~~~~~D~iQ~----~l~CCG~~~--~~DW~~~~~~~~vP~SCC~~~~~~C~~~~----~ 79 (103)
T cd03157 17 KSRMSNFGLQR-------YQWLTHAWNSFQT----EFKCCGVIY--FTDWLEMTEMEWPPDSCCSNQYPGCARQA----H 79 (103)
T ss_pred HHHHHHHCCCC-------chhHHHHHHHHHH----hccCccCCC--hhHHhccCCCCCCCccccCCCCCCcCcCC----C
Confidence 34566776532 1124678999999 999999999 99997542 135999999743 3454210 0
Q ss_pred CCCccccCCCCCceeeeCcchHHHHHHHHHH
Q 023538 184 DPDCYRWNNAPTLLCYECDSCKAGVLEDVRR 214 (281)
Q Consensus 184 ~~~C~~~~~~~~~gc~~~~GC~~~l~~~l~~ 214 (281)
..... ..|+ +||.+++.++++.
T Consensus 80 -------~~~~~-~iy~-~GC~~~i~~~l~~ 101 (103)
T cd03157 80 -------YNDLS-DLYQ-EGCGPKIYSFIRG 101 (103)
T ss_pred -------Ccccc-cccc-cchHHHHHHHHHh
Confidence 00001 1233 7999999999975
No 17
>cd03127 tetraspanin_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL). Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. The tetraspanin family contains CD9, CD63, CD37, CD53, CD82, CD151, and CD81, amongst others. Tetraspanins are involved in diverse processes such as cell activation and proliferation, adhesion and motility, differentiation, cancer, and others. Their various functions may relate to their ability to act as molecular facilitators, grouping specific cell-surface proteins and affecting formation and stability of signaling complexes. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web", which may also include integr
Probab=99.28 E-value=5.8e-13 Score=98.95 Aligned_cols=62 Identities=24% Similarity=0.475 Sum_probs=46.2
Q ss_pred CccchHHHHhccccCccccCcccccccccccccccccCCCcCCCCCCCCCCCCCCCCCCCccccCCCCCceeeeCcchHH
Q 023538 127 DPNYWSTIRSCLLGSKTCAKLALWTPLDYLERDMTPIQSGCCKPPTSCNYNMPTMAQDPDCYRWNNAPTLLCYECDSCKA 206 (281)
Q Consensus 127 ~~~~~d~iQ~~~~~~~~CCG~~g~~~~Dw~~~~~~~vP~SCC~~~~~C~~~~~~~~~~~~C~~~~~~~~~gc~~~~GC~~ 206 (281)
.+.+||.+|. +|+|||++| |.||.... ..||+|||.... + .|. .+ ... +||.+
T Consensus 28 ~~~~~d~iq~----~l~CCG~~~--~~D~~~~~-~~vP~SCc~~~~-~-----------~~~--~~----~~~--~GC~~ 80 (90)
T cd03127 28 FQEAMDALQS----TFECCGVNG--PTDYLDLR-LLVPSSCCKGTD-G-----------NCG--LN----LYT--EGCLE 80 (90)
T ss_pred HHHHHHHHHH----hCcCcCCCC--hHHHccCC-CCCCHhhcCCCC-C-----------CCc--cc----hhh--HccHH
Confidence 4679999999 999999999 99997633 579999996421 1 111 00 122 78889
Q ss_pred HHHHHHHHH
Q 023538 207 GVLEDVRRD 215 (281)
Q Consensus 207 ~l~~~l~~~ 215 (281)
++.++++++
T Consensus 81 ~~~~~~~~~ 89 (90)
T cd03127 81 KLVDFLRSN 89 (90)
T ss_pred HHHHHHHhh
Confidence 999999876
No 18
>cd03152 CD9_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD9 family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD9 is found in virtually all tissues and is potentially involved in developmental processes. It associates with the tetraspanins CD81 and CD63, as well as with some integrin, and has been shown to be involved in a variety of activation, adhesion, and cell motility functions, as well as cell-cell interactions - such as
Probab=99.21 E-value=1.2e-12 Score=96.90 Aligned_cols=82 Identities=15% Similarity=0.139 Sum_probs=54.9
Q ss_pred hheecCCCccccc--CccccccccCCCchhhhccCCCccchHHHHhccccCccccCcccccccccccccccccCCCcCCC
Q 023538 93 FVVTSRGGGVQVP--GRVYKEYHLQDYSPWLRNRVKDPNYWSTIRSCLLGSKTCAKLALWTPLDYLERDMTPIQSGCCKP 170 (281)
Q Consensus 93 ~~~~~~i~~~~~~--~~~~~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~g~~~~Dw~~~~~~~vP~SCC~~ 170 (281)
|++++++.+.+.+ .+.+++|..++ +...+.+||.+|+ +|+|||++| +.|| .||+||++.
T Consensus 1 ~v~r~~v~~~i~~~~~~~~~~y~~~~-------~~~~~~~~d~iQ~----~l~CCG~~~--~~D~------~vP~SC~~~ 61 (84)
T cd03152 1 FSNKDKVVKEVQTFYRQTYAKYKQSR-------DPPLKETLKAIHF----ALDCCGPTG--GLEQ------FVTDTCPKK 61 (84)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhccC-------CHHHHHHHHHHHH----HHcCCCCCC--Cccc------ccCCCCCCC
Confidence 3567777666544 45566665431 1123458999999 999999999 9999 399998421
Q ss_pred CCCCCCCCCCCCCCCCccccCCCCCceeeeCcchHHHHHHHHHHHH
Q 023538 171 PTSCNYNMPTMAQDPDCYRWNNAPTLLCYECDSCKAGVLEDVRRDW 216 (281)
Q Consensus 171 ~~~C~~~~~~~~~~~~C~~~~~~~~~gc~~~~GC~~~l~~~l~~~~ 216 (281)
+. . .+ ... +||.+++.+++++++
T Consensus 62 ~~-----------~------~~----~~~--~gC~~~i~~~~~~~~ 84 (84)
T cd03152 62 EG-----------L------EN----LIT--KSCPDAIDDVFNSKL 84 (84)
T ss_pred Cc-----------h------hh----hcc--CCCcHHHHHHHHccC
Confidence 10 0 00 122 788899999998863
No 19
>cd03151 CD81_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD81_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD81, also referred to as Target for anti-proliferative antigen-1, TAPA-1, is found in virtually all tissues, may be involved in regulation of cell growth and has been described as a member of the CD19/CD21/Leu-13 signal transduction complex identified on B cells (the B-Cell co-receptor).
Probab=98.70 E-value=1.5e-09 Score=80.33 Aligned_cols=81 Identities=16% Similarity=0.134 Sum_probs=54.1
Q ss_pred hheecCCCccccc--CccccccccCCCchhhhccCCCccchHHHHhccccCccccCcccccccccccccccccCCCcCCC
Q 023538 93 FVVTSRGGGVQVP--GRVYKEYHLQDYSPWLRNRVKDPNYWSTIRSCLLGSKTCAKLALWTPLDYLERDMTPIQSGCCKP 170 (281)
Q Consensus 93 ~~~~~~i~~~~~~--~~~~~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~g~~~~Dw~~~~~~~vP~SCC~~ 170 (281)
+++++++.+.+.+ ++.+++|..+. +...+.+||.+|+ +|+|||.+| +.|+.. ..+|++|...
T Consensus 1 ~v~r~~v~~~i~~~l~~~~~~y~~~~-------~~~~~~~~d~iQ~----~l~CCG~~~--~~d~~~---~~~~~~C~~~ 64 (84)
T cd03151 1 FINKDQIIKEVQNFYDSAYQDAVTDT-------RSKGTAVLKTFHS----TLDCCGKGN--LTALLS---LLSTDLCPKK 64 (84)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHccCc-------chhHHHHHHHHHH----hcCCCCCCC--CcchHH---HHHhCCCCCc
Confidence 3556666665544 45566664421 1124568999999 999999999 999864 3577777311
Q ss_pred CCCCCCCCCCCCCCCCccccCCCCCceeeeCcchHHHHHHHHHHH
Q 023538 171 PTSCNYNMPTMAQDPDCYRWNNAPTLLCYECDSCKAGVLEDVRRD 215 (281)
Q Consensus 171 ~~~C~~~~~~~~~~~~C~~~~~~~~~gc~~~~GC~~~l~~~l~~~ 215 (281)
. ...+ ++|.+++.++++.+
T Consensus 65 --~----------------------~~~~--~~C~~~i~~~~~~~ 83 (84)
T cd03151 65 --L----------------------LLDT--KDCHQEIDDLFSEK 83 (84)
T ss_pred --c----------------------ccCC--CCccHHHHHHHhcc
Confidence 0 0123 78889999999875
No 20
>PF05640 NKAIN: Na,K-Atpase Interacting protein; InterPro: IPR008516 NKAIN (Na,K-Atpase INteracting) proteins are a family of evolutionary conserved transmembrane proteins that localise to neurons, that are critical for neuronal function, and that interact with the beta subunits, beta1 in vertebrates and beta in Drosophila, of Na,K-ATPase. NKAINs have highly conserved trans-membrane domains but otherwise no other characterised domains. NKAINs may function as subunits of pore or channel structures in neurons or they may affect the function of other membrane proteins. They are likely to function within the membrane bilayer [].
Probab=86.80 E-value=9.5 Score=32.61 Aligned_cols=44 Identities=18% Similarity=0.272 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHH
Q 023538 45 LLVIGFVVLIISLAGFIGACFNVAWALWVYLVVMLFLIATLMAL 88 (281)
Q Consensus 45 li~iG~v~~~vs~lGc~Ga~~es~~lL~~Y~~lL~vl~i~ei~~ 88 (281)
-|..-.+-+++-++|.+||..-++..+.+|++-..+-+.--+..
T Consensus 36 PIl~NF~hIi~vIlGlFG~~QyR~ryi~~Y~vW~~~Wv~wNvfi 79 (200)
T PF05640_consen 36 PILANFLHIIFVILGLFGAIQYRPRYIIVYAVWTALWVTWNVFI 79 (200)
T ss_pred HHHHHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHhHHH
Confidence 45555566666689999999999999999998887766665443
No 21
>PF10724 DUF2516: Protein of unknown function (DUF2516); InterPro: IPR019662 This entry represents a conserved protein in Actinobacteria. The function is not known.
Probab=84.56 E-value=7 Score=29.76 Aligned_cols=27 Identities=11% Similarity=0.172 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhheeec
Q 023538 7 TVIGFLNLFTLLASIPIIGAGLWMARS 33 (281)
Q Consensus 7 ~~L~~~N~lf~l~G~~ll~~Giw~~~~ 33 (281)
.+.-+.+.+++++.++.+++++|.+++
T Consensus 3 ~l~~~~~~i~~~l~~~~~~~~v~Alv~ 29 (100)
T PF10724_consen 3 FLFQIQGWILLALSLVALVLAVWALVD 29 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888899999999999999988
No 22
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=82.38 E-value=2 Score=36.26 Aligned_cols=11 Identities=9% Similarity=0.380 Sum_probs=4.8
Q ss_pred HHHHHHhhhee
Q 023538 86 MALTIFGFVVT 96 (281)
Q Consensus 86 i~~~i~~~~~~ 96 (281)
+++|+..+..+
T Consensus 53 ~~~g~~~~~~~ 63 (191)
T PF04156_consen 53 LSLGLLCLLSK 63 (191)
T ss_pred HHHHHHHHHHc
Confidence 44444444443
No 23
>PF14967 FAM70: FAM70 protein
Probab=80.84 E-value=2 Score=38.85 Aligned_cols=76 Identities=20% Similarity=0.202 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhhhheeeccccchhhcchhHHHHHHHHHHHHHHHHHHHhc-Ccc-hhHHHHHHHHHHH----HHHHHH
Q 023538 14 LFTLLASIPIIGAGLWMARSSTTCESFLQTPLLVIGFVVLIISLAGFIGACF-NVA-WALWVYLVVMLFL----IATLMA 87 (281)
Q Consensus 14 ~lf~l~G~~ll~~Giw~~~~~~~~~~~~~~~li~iG~v~~~vs~lGc~Ga~~-es~-~lL~~Y~~lL~vl----~i~ei~ 87 (281)
..++++++.++.+|+..-.. |+ ++. ..-.--|+++-+-||+|.+|+.. ||| -||..-++++.+- |..-|+
T Consensus 32 ~~lL~vS~~iltvGLaatTR-Te--NVt-VgGYyPGIILgFGSFLGIiGi~LvENrRqmLvAaIVFiSfGvVaAFcCaIV 107 (327)
T PF14967_consen 32 VSLLVVSLLILTVGLAATTR-TE--NVT-VGGYYPGIILGFGSFLGIIGIHLVENRRQMLVAAIVFISFGVVAAFCCAIV 107 (327)
T ss_pred HHHHHHHHHHHHhhhheeee-ec--ceE-ecccccceEEeehhHHHHhhhhhhhcCceEEEEEEEEEecchHHHHHHHHH
Confidence 34456667777777765432 21 110 00111233334457888888874 665 4444443333333 333344
Q ss_pred HHHHhh
Q 023538 88 LTIFGF 93 (281)
Q Consensus 88 ~~i~~~ 93 (281)
=|+++.
T Consensus 108 DGVfaa 113 (327)
T PF14967_consen 108 DGVFAA 113 (327)
T ss_pred HHHhhh
Confidence 455443
No 24
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=78.68 E-value=4.1 Score=39.27 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=34.1
Q ss_pred chh-HHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHH
Q 023538 42 QTP-LLVIGFVVLIISLAGFIGACFNVAWALWVYLVVMLFLIAT 84 (281)
Q Consensus 42 ~~~-li~iG~v~~~vs~lGc~Ga~~es~~lL~~Y~~lL~vl~i~ 84 (281)
.+| .+++=.+.+++.+.++.|.+|.|||+++.|.++=++.+++
T Consensus 209 RW~~~v~lL~l~LvvC~v~vlglak~Skc~li~fsv~Gll~lvi 252 (526)
T KOG4433|consen 209 RWLAYVLLLTLLLVVCLVLVLGLAKRSKCLLIVFSVCGLLALVI 252 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHH
Confidence 444 6666678889999999999999999999988765554443
No 25
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=76.07 E-value=4.3 Score=31.71 Aligned_cols=49 Identities=20% Similarity=0.217 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHhhhheeeccccchhhcchhHHHHHHHHHHHHHH
Q 023538 10 GFLNLFTLLASIPIIGAGLWMARSSTTCESFLQTPLLVIGFVVLIISLA 58 (281)
Q Consensus 10 ~~~N~lf~l~G~~ll~~Giw~~~~~~~~~~~~~~~li~iG~v~~~vs~l 58 (281)
+.+-++++++|.+++.+|..+.....+-...-..+++++|+++++=|+.
T Consensus 44 I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~fIPG~Y 92 (115)
T PF05915_consen 44 IALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLILGILCFIPGFY 92 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHhccHH
Confidence 4556677888888888888766552111111245588888888876654
No 26
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=75.89 E-value=27 Score=29.77 Aligned_cols=25 Identities=8% Similarity=-0.145 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhheeec
Q 023538 9 IGFLNLFTLLASIPIIGAGLWMARS 33 (281)
Q Consensus 9 L~~~N~lf~l~G~~ll~~Giw~~~~ 33 (281)
+-++-.+|.++|+.++.+|...++.
T Consensus 5 ~eiI~~vLLliG~~f~ligaIGLlR 29 (197)
T PRK12585 5 IEIIISIMILIGGLLSILAAIGVIR 29 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566777787777777766554
No 27
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=74.36 E-value=11 Score=36.05 Aligned_cols=40 Identities=25% Similarity=0.252 Sum_probs=29.6
Q ss_pred chh-HHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH
Q 023538 42 QTP-LLVIGFVVLIISLAGFIGACFNVAWALWVYLVVMLFL 81 (281)
Q Consensus 42 ~~~-li~iG~v~~~vs~lGc~Ga~~es~~lL~~Y~~lL~vl 81 (281)
..| .+++=++.+++++++++|..|.|||.+.++.++=++.
T Consensus 208 Rw~~~l~lL~~~lviC~~~l~gl~r~Sr~~li~~s~~g~l~ 248 (418)
T cd07912 208 RWLAYLGLLSLLLVICLVLLVGLARHSRCLLIVFSVCGLFA 248 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 444 4555557778899999999999999999885543333
No 28
>PF11297 DUF3098: Protein of unknown function (DUF3098); InterPro: IPR021448 This bacterial family of proteins has no known function.
Probab=73.19 E-value=4.4 Score=28.65 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHhhhheeec
Q 023538 12 LNLFTLLASIPIIGAGLWMARS 33 (281)
Q Consensus 12 ~N~lf~l~G~~ll~~Giw~~~~ 33 (281)
-|.+++.+|++++++|-++..-
T Consensus 6 ~Nyill~iG~~vIilGfilMsg 27 (69)
T PF11297_consen 6 KNYILLAIGIAVIILGFILMSG 27 (69)
T ss_pred HHHHHHHHHHHHHHHHHHheeC
Confidence 4899999999999999988766
No 29
>PF04103 CD20: CD20-like family; InterPro: IPR007237 This family includes the CD20 protein and the beta subunit of the high affinity receptor for IgE Fc. The high affinity receptor for IgE is a tetrameric structure consisting of a single IgE-binding alpha subunit, a single beta subunit, and two disulphide-linked gamma subunits. The alpha subunit of Fc epsilon RI and most Fc receptors are homologous members of the Ig superfamily. By contrast, the beta and gamma subunits from Fc epsilon RI are not homologous to the Ig superfamily. Both molecules have four putative transmembrane segments and a probably topology where both amino- and carboxy termini protrude into the cytoplasm []. This family also includes LR8 like proteins from humans, mice and rats. The function of the human LR8 protein is unknown although it is known to be strongly expressed in the lung fibroblasts []. This family also includes sarcospan is a transmembrane component of dystrophin-associated glycoprotein. Loss of the sarcoglycan complex and sarcospan alone is sufficient to cause muscular dystrophy. The role of the sarcoglycan complex and sarcospan is thought to be to strengthen the dystrophin axis connecting the basement membrane with the cytoskeleton []. ; GO: 0016021 integral to membrane; PDB: 2OSL_Q 3BKY_P 3PP4_P.
Probab=72.05 E-value=1.2 Score=35.55 Aligned_cols=72 Identities=15% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhheeeccccchhhcchhHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHH
Q 023538 15 FTLLASIPIIGAGLWMARSSTTCESFLQTPLLVIGFVVLIISLAGFIGACFNVAWALWVYLVVMLFLIATLMA 87 (281)
Q Consensus 15 lf~l~G~~ll~~Giw~~~~~~~~~~~~~~~li~iG~v~~~vs~lGc~Ga~~es~~lL~~Y~~lL~vl~i~ei~ 87 (281)
+-.++|+..+.+|+.+............. -+-.|+..++.|.+|....-|++++++..+.++-++-++.-++
T Consensus 5 ~qI~lGi~~i~lGi~~~~~~~~~~~~~~~-piW~G~~fiisG~l~i~s~k~~~~~lv~~~l~lsi~s~~~a~~ 76 (150)
T PF04103_consen 5 IQILLGILSIVLGIIALSLSSSVLVYIGY-PIWGGIFFIISGILGIASEKKPTKCLVIASLVLSIVSALLALA 76 (150)
T ss_dssp -------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhcc-cHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHH
Confidence 34567777788887766441110011122 3445888889999999999999999988888776666655433
No 30
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=71.23 E-value=17 Score=36.52 Aligned_cols=62 Identities=23% Similarity=0.435 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhheeec-cccchhhcchhHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH
Q 023538 9 IGFLNLFTLLASIPIIGAGLWMARS-STTCESFLQTPLLVIGFVVLIISLAGFIGACFNVAWALWVYLVVMLFL 81 (281)
Q Consensus 9 L~~~N~lf~l~G~~ll~~Giw~~~~-~~~~~~~~~~~li~iG~v~~~vs~lGc~Ga~~es~~lL~~Y~~lL~vl 81 (281)
+-+..+++.++|+++++-|+|+..- .+. -.++.|+.+++.+++ .++++|-.|.+|+.+++.-
T Consensus 3 ~~~~~~~~~~~gl~l~~gg~~l~~lggs~-------yy~iagl~~l~~~~l----l~~~k~aal~lya~~~~~t 65 (773)
T COG4993 3 VTLTALVIALCGLALLIGGIWLVALGGSW-------YYLIAGLVLLLSAWL----LLRRKRAALWLYALVLLGT 65 (773)
T ss_pred hhHHHHHHHHHHHHHhccceeEEeeCCch-------HHHHHHHHHHHHHHH----HhccchhHHHHHHHHHHHH
Confidence 3456788899999999999998754 211 144555555555554 4566777777777666543
No 31
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=66.89 E-value=3 Score=41.62 Aligned_cols=53 Identities=17% Similarity=0.191 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcccccccccccc------Ccch
Q 023538 214 RDWHKLSVLNIVMLVVLIGIYSIGCCAFQNTRRAQTDYPYGENQMTKVRP------RWDY 267 (281)
Q Consensus 214 ~~~~~i~~~~i~v~~lqi~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 267 (281)
+|+.+|+++...++++-++.+++.++|+|+-|.+.++ .-=.|.-.|+|+ -|||
T Consensus 267 ~NlWII~gVlvPv~vV~~Iiiil~~~LCRk~K~eFqp-Da~~niqqR~K~q~psVqGFD~ 325 (684)
T PF12877_consen 267 NNLWIIAGVLVPVLVVLLIIIILYWKLCRKNKLEFQP-DAMSNIQQRQKPQAPSVQGFDY 325 (684)
T ss_pred CCeEEEehHhHHHHHHHHHHHHHHHHHhcccccCCCc-hhhhhcccccccCCCCcccccH
Confidence 4566778888888899889999999999888777665 222255557776 5787
No 32
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=66.26 E-value=52 Score=27.95 Aligned_cols=79 Identities=13% Similarity=0.071 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhheeecc--ccchhhcchhHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHH
Q 023538 8 VIGFLNLFTLLASIPIIGAGLWMARSS--TTCESFLQTPLLVIGFVVLIISLAGFIGACFNVAWALWVYLVVMLFLIATL 85 (281)
Q Consensus 8 ~L~~~N~lf~l~G~~ll~~Giw~~~~~--~~~~~~~~~~li~iG~v~~~vs~lGc~Ga~~es~~lL~~Y~~lL~vl~i~e 85 (281)
-++++++++++++++-++.+....+++ .+.......+ - ++.++.+++|-.|.-|.|.-+|..|.+..+++-+.-
T Consensus 39 ~l~~~h~ll~l~~~a~v~~~~L~~i~~~~~p~p~~Wey~-~---~lS~ip~~~G~~s~~rN~i~~l~~y~~~~~~~gl~p 114 (186)
T PF07086_consen 39 KLILFHALLWLLMAAKVSVDILLEISELQIPSPYQWEYI-W---CLSLIPSLLGLLSLRRNNISLLRLYMIGSSLFGLLP 114 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccCChhHHHHH-H---HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence 356888898988888777777644431 1110111111 1 224556677777878888888888877666654544
Q ss_pred HHHHH
Q 023538 86 MALTI 90 (281)
Q Consensus 86 i~~~i 90 (281)
++.|.
T Consensus 115 l~~g~ 119 (186)
T PF07086_consen 115 LIYGA 119 (186)
T ss_pred HHHHH
Confidence 44444
No 33
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=64.60 E-value=15 Score=30.86 Aligned_cols=39 Identities=18% Similarity=0.388 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcch-------------hHHHHHHHHHHHHH
Q 023538 45 LLVIGFVVLIISLAGFIGACFNVAW-------------ALWVYLVVMLFLIA 83 (281)
Q Consensus 45 li~iG~v~~~vs~lGc~Ga~~es~~-------------lL~~Y~~lL~vl~i 83 (281)
+++.++++++++++-.....+..+. -...|+++++-+++
T Consensus 35 ~~~a~i~l~ilai~q~~~~~~~~~~~~~~h~h~~~~~~~~~~y~l~~iPll~ 86 (182)
T PF09323_consen 35 LYFAAILLLILAIVQLWRWFRPKRRKEDCHDHGHSKSKKLWSYFLFLIPLLI 86 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence 6777778888888888888876443 45566655554443
No 34
>PF15050 SCIMP: SCIMP protein
Probab=62.78 E-value=18 Score=28.42 Aligned_cols=34 Identities=12% Similarity=0.128 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023538 210 EDVRRDWHKLSVLNIVMLVVLIGIYSIGCCAFQNT 244 (281)
Q Consensus 210 ~~l~~~~~~i~~~~i~v~~lqi~~~~~a~~l~~~~ 244 (281)
+|.++|..++.++++.+ +--.+|+++-|...++.
T Consensus 2 ~WWr~nFWiiLAVaII~-vS~~lglIlyCvcR~~l 35 (133)
T PF15050_consen 2 SWWRDNFWIILAVAIIL-VSVVLGLILYCVCRWQL 35 (133)
T ss_pred chHHhchHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 46788888888777544 33334555544333333
No 35
>PF06770 Arif-1: Actin-rearrangement-inducing factor (Arif-1); InterPro: IPR010639 This family consists of several Nucleopolyhedrovirus actin-rearrangement-inducing factor (Arif-1) proteins. In response to Autographa californica nuclear polyhedrosis virus (AcMNPV) infection, a sequential rearrangement of the actin cytoskeleton occurs this is induced by Arif-1 []. Arif-1 is tyrosine phosphorylated and is located at the plasma membrane as a component of the actin rearrangement-inducing complex [].
Probab=60.33 E-value=65 Score=27.57 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhhhheeec-cc----cch---hh--cchhHHHHHHHHHHHHHHHHHHHhcCc
Q 023538 14 LFTLLASIPIIGAGLWMARS-ST----TCE---SF--LQTPLLVIGFVVLIISLAGFIGACFNV 67 (281)
Q Consensus 14 ~lf~l~G~~ll~~Giw~~~~-~~----~~~---~~--~~~~li~iG~v~~~vs~lGc~Ga~~es 67 (281)
+++.++|++.+++|+....+ +. +.+ +. .+..+.+.|..+++.++.|.+....|-
T Consensus 3 ~~~~v~g~~~~~~gl~G~~~~~yAllldye~g~~v~N~S~l~~vyG~~l~~~~~~~~~~~~~~~ 66 (196)
T PF06770_consen 3 IILFVVGSAAFVFGLMGIVDERYALLLDYENGSSVFNCSGLVFVYGPLLLLVTTWGVYKITSKM 66 (196)
T ss_pred chhHHHHHHHHHHHhhheecCceeeEEEecCCCccEeehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556888889999988777 32 211 11 233389999999999999988777543
No 36
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=59.21 E-value=35 Score=23.63 Aligned_cols=49 Identities=14% Similarity=0.370 Sum_probs=35.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhheeeccccchhhcchhHHHHHHHHHHHHHH
Q 023538 2 YRFSNTVIGFLNLFTLLASIPIIGAGLWMARSSTTCESFLQTPLLVIGFVVLIISLA 58 (281)
Q Consensus 2 ~r~~k~~L~~~N~lf~l~G~~ll~~Giw~~~~~~~~~~~~~~~li~iG~v~~~vs~l 58 (281)
+++.|.+-=.+.++++++|.+.+.++.+... . ...++.+|+.++++|.+
T Consensus 4 K~~fk~iW~~~DIi~Fila~i~i~it~F~~n-------~-~~g~i~i~I~l~l~G~i 52 (63)
T PF06341_consen 4 KKFFKTIWKYFDIILFILAMIFINITAFLIN-------Q-IAGLISIGITLFLAGLI 52 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-HHHHHHHHHHHHHHHHH
Confidence 3567777778889999999999988887651 1 22377777777777655
No 37
>COG2245 Predicted membrane protein [Function unknown]
Probab=56.56 E-value=81 Score=26.42 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhhhheeec
Q 023538 13 NLFTLLASIPIIGAGLWMARS 33 (281)
Q Consensus 13 N~lf~l~G~~ll~~Giw~~~~ 33 (281)
..++-+.|.+++-+|+++..+
T Consensus 27 ~~ilSlVG~VLvlval~~iS~ 47 (182)
T COG2245 27 LWILSLVGLVLVLVALYMISK 47 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346788899999999998877
No 38
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=55.57 E-value=51 Score=27.53 Aligned_cols=20 Identities=15% Similarity=0.454 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHhhhhe
Q 023538 11 FLNLFTLLASIPIIGAGLWM 30 (281)
Q Consensus 11 ~~N~lf~l~G~~ll~~Giw~ 30 (281)
+.+++..++|+++++.|+-+
T Consensus 6 i~~i~~iilgilli~~gI~~ 25 (191)
T PF04156_consen 6 IISIILIILGILLIASGIAA 25 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555544
No 39
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=54.01 E-value=9.5 Score=26.10 Aligned_cols=46 Identities=22% Similarity=0.301 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhhhheeec-cccchhhcc-hh------HHHHHHHHHHHHHHH
Q 023538 14 LFTLLASIPIIGAGLWMARS-STTCESFLQ-TP------LLVIGFVVLIISLAG 59 (281)
Q Consensus 14 ~lf~l~G~~ll~~Giw~~~~-~~~~~~~~~-~~------li~iG~v~~~vs~lG 59 (281)
+.+.+.|++++..|.-...+ ..+..+.++ .| +++.|++..++|+++
T Consensus 5 i~Llv~GivLl~~G~~~~~S~~s~~s~~~TG~~t~~t~~~ligG~va~ivGl~~ 58 (59)
T PF11381_consen 5 IALLVGGIVLLYFGYQASDSLGSQVSRAFTGSPTDKTIWYLIGGAVAVIVGLFL 58 (59)
T ss_pred ehHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCCCchhHHHHHhHHHHHHHHHhh
Confidence 45566666666666533222 111122221 11 788888888888764
No 40
>KOG3646 consensus Acetylcholine receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.11 E-value=22 Score=34.26 Aligned_cols=90 Identities=18% Similarity=0.217 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhheeeccccchhh-cchh-HHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHH
Q 023538 6 NTVIGFLNLFTLLASIPIIGAGLWMARSSTTCESF-LQTP-LLVIGFVVLIISLAGFIGACFNVAWALWVYLVVMLFLIA 83 (281)
Q Consensus 6 k~~L~~~N~lf~l~G~~ll~~Giw~~~~~~~~~~~-~~~~-li~iG~v~~~vs~lGc~Ga~~es~~lL~~Y~~lL~vl~i 83 (281)
|.+.+.||++.-.+-+.++++=.+.+--+.. ++. +... ++.+-.++..+| -...+..|+..++..||-..++++.
T Consensus 234 RTLyYgfNlIiP~lLIs~m~lLgFtlppD~g-EKitL~iTilLsvc~FL~mvs--e~~PpTSeaVPllg~fFsc~m~iv~ 310 (486)
T KOG3646|consen 234 RTLYYGFNLIIPSLLISLMSLLGFTLPPDAG-EKITLQITILLSVCFFLTMVS--EMTPPTSEAVPLLGAFFSCCMFIVA 310 (486)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhccccCcccc-ceeeeeeehHHHHHHHHHHHH--hhcCCccccccHHHHHHHHHHHHHH
Confidence 4588999998755555443333332211110 111 1111 333333333333 3478889999999999999999999
Q ss_pred HHHHHHHHhhheecC
Q 023538 84 TLMALTIFGFVVTSR 98 (281)
Q Consensus 84 ~ei~~~i~~~~~~~~ 98 (281)
+-++..++.+.++.+
T Consensus 311 ~SvvfTv~vLn~h~R 325 (486)
T KOG3646|consen 311 ASVVFTVIVLNLHHR 325 (486)
T ss_pred hhheeEEEEEeeecc
Confidence 988888877776643
No 41
>PF10361 DUF2434: Protein of unknown function (DUF2434); InterPro: IPR018830 This entry represents a family of proteins conserved in fungi. Their function is not known.
Probab=49.97 E-value=23 Score=32.12 Aligned_cols=48 Identities=17% Similarity=0.371 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccCCCccccccccccccCcchhHh
Q 023538 220 SVLNIVMLVVLIGIYSIGCCAFQNTRRAQTDYPYGENQMTKVRPRWDYYWW 270 (281)
Q Consensus 220 ~~~~i~v~~lqi~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (281)
+.+|++++++=.++++++..-.+|..+..- =.+-+-..+.-||..||=
T Consensus 47 g~vGI~fav~f~i~lvltLvnL~KHG~~~l---p~eKRf~~iGRRwqWyW~ 94 (296)
T PF10361_consen 47 GSVGIAFAVLFAIALVLTLVNLRKHGRLYL---PLEKRFYPIGRRWQWYWM 94 (296)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhcC---CchhcccccchhHHHHHH
Confidence 566777777766777777655555544433 355566778899999984
No 42
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=48.70 E-value=81 Score=21.21 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=32.3
Q ss_pred HHHHHHHhhhheeeccccchhhcchhHHHHHHHHHHHHHHHHHHHhcCcc
Q 023538 19 ASIPIIGAGLWMARSSTTCESFLQTPLLVIGFVVLIISLAGFIGACFNVA 68 (281)
Q Consensus 19 ~G~~ll~~Giw~~~~~~~~~~~~~~~li~iG~v~~~vs~lGc~Ga~~es~ 68 (281)
.|+..+.+|+++...+. .......+.+|..+++.|..-...+.++++
T Consensus 2 ~Gil~iv~Gi~~l~~p~---~~~~~~~~i~g~~~i~~Gi~~l~~~~~~~~ 48 (72)
T PF03729_consen 2 SGILFIVLGILLLFNPD---ASLAALAIILGIWLIISGIFQLISAFRRRK 48 (72)
T ss_pred HHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 57788888888775521 111222678888889999998888888543
No 43
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=48.13 E-value=44 Score=20.71 Aligned_cols=24 Identities=17% Similarity=0.539 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023538 217 HKLSVLNIVMLVVLIGIYSIGCCA 240 (281)
Q Consensus 217 ~~i~~~~i~v~~lqi~~~~~a~~l 240 (281)
.+++++..+++++-+.-+..+||.
T Consensus 7 aIIv~V~vg~~iiii~~~~YaCcy 30 (38)
T PF02439_consen 7 AIIVAVVVGMAIIIICMFYYACCY 30 (38)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555554444444455554
No 44
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=47.65 E-value=87 Score=26.58 Aligned_cols=50 Identities=24% Similarity=0.316 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhhhheeecc-ccchhhcchhHHHHHHHHHHHHHHHHHHHhcCcc
Q 023538 15 FTLLASIPIIGAGLWMARSS-TTCESFLQTPLLVIGFVVLIISLAGFIGACFNVA 68 (281)
Q Consensus 15 lf~l~G~~ll~~Giw~~~~~-~~~~~~~~~~li~iG~v~~~vs~lGc~Ga~~es~ 68 (281)
.+.+.|++++.+|++...+. .+ ......++|.++++.|.+=..++..+++
T Consensus 21 ~~l~~Gv~lii~Gl~~l~~P~~s----~~~l~~~vG~~lli~Gi~~ii~af~~r~ 71 (185)
T COG3247 21 WVLLLGVLLIILGLLALFNPAIS----TVALVYVVGILLLISGIIEIISAFGNRS 71 (185)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35788999999999887652 11 1122678888888888888888887665
No 45
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=46.14 E-value=16 Score=28.85 Aligned_cols=8 Identities=38% Similarity=0.592 Sum_probs=3.3
Q ss_pred cccccccc
Q 023538 252 PYGENQMT 259 (281)
Q Consensus 252 ~~~~~~~~ 259 (281)
-+++.-|+
T Consensus 34 ~~gt~w~~ 41 (130)
T PF12273_consen 34 IYGTRWMA 41 (130)
T ss_pred cCCceecC
Confidence 34444333
No 46
>KOG4054 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.98 E-value=1.8e+02 Score=24.37 Aligned_cols=77 Identities=13% Similarity=0.125 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhheeeccccchhhcchhHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHH
Q 023538 9 IGFLNLFTLLASIPIIGAGLWMARSSTTCESFLQTPLLVIGFVVLIISLAGFIGACFNVAWALWVYLVVMLFLIATLMA 87 (281)
Q Consensus 9 L~~~N~lf~l~G~~ll~~Giw~~~~~~~~~~~~~~~li~iG~v~~~vs~lGc~Ga~~es~~lL~~Y~~lL~vl~i~ei~ 87 (281)
+|++.+++|+++++-+++|---...+.+... ..+-=..=+..++-+++|..+.-|.+...|..|.+.+.+..+.-..
T Consensus 40 lifvh~lI~v~mlak~~l~hl~~~k~d~v~~--py~wey~~~~SllpslLgllsf~rnkv~~L~l~m~a~~lf~i~p~~ 116 (183)
T KOG4054|consen 40 LIFVHALIWVLMLAKMSLGHLRLLKHDQVPM--PYQWEYVWALSLLPSLLGLLSFRRNKVSYLVLYMIAMGLFMIFPLV 116 (183)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhcccCCC--chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 5677888898888887755432222111101 1111111123456788888888888889999888887777655443
No 47
>PHA00363 major capsid protein
Probab=45.91 E-value=7.8 Score=37.56 Aligned_cols=25 Identities=44% Similarity=0.926 Sum_probs=20.7
Q ss_pred cccCCCccccccccccccCcchhHh
Q 023538 246 RAQTDYPYGENQMTKVRPRWDYYWW 270 (281)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (281)
+...+|.++.|.+....+||||||=
T Consensus 407 ~~~l~Yqqgld~~wsr~~r~Df~~P 431 (557)
T PHA00363 407 RADLTYQQGLDRMWSRRTRWDFYWP 431 (557)
T ss_pred ccccchhhccChhhhhcccccccch
Confidence 3455689999988888999999984
No 48
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=45.27 E-value=11 Score=35.87 Aligned_cols=32 Identities=28% Similarity=0.420 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH
Q 023538 50 FVVLIISLAGFIGACFNVAWALWVYLVVMLFL 81 (281)
Q Consensus 50 ~v~~~vs~lGc~Ga~~es~~lL~~Y~~lL~vl 81 (281)
++.+++.+++++|.+|.|||.+..+.++-++.
T Consensus 194 ~l~l~icl~~l~glar~Sk~~li~~~v~gll~ 225 (406)
T PF04906_consen 194 ILDLVICLLGLLGLARQSKCLLIVFSVLGLLA 225 (406)
T ss_pred HHHHHHHHHHHHHHHhcCcceEEEeeeccHHH
Confidence 56778899999999999999997766544433
No 49
>PF15125 TMEM238: TMEM238 protein family
Probab=44.83 E-value=86 Score=21.80 Aligned_cols=46 Identities=13% Similarity=0.281 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhheeeccccchhhcchhHHHHHHHHHHHHHHHHH
Q 023538 9 IGFLNLFTLLASIPIIGAGLWMARSSTTCESFLQTPLLVIGFVVLIISLAGFI 61 (281)
Q Consensus 9 L~~~N~lf~l~G~~ll~~Giw~~~~~~~~~~~~~~~li~iG~v~~~vs~lGc~ 61 (281)
.+.+-++|=++|++++-.|+..-.+ +..-++=.|+++++.|+++.+
T Consensus 6 ~f~laV~fD~vGl~~Ll~GiFa~l~-------f~D~lvY~GaliiflSL~~Wv 51 (65)
T PF15125_consen 6 FFWLAVVFDVVGLVMLLTGIFAPLD-------FYDFLVYTGALIIFLSLLWWV 51 (65)
T ss_pred hhHHHHHHHHhhHHHHHHHHhcchh-------HHHHHHHHhHHHHHHHHHHHH
Confidence 3446677777777777777765432 111256677777777777654
No 50
>cd03153 PHEMX_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), PHEMX_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Phemx (pan hematopoietic expression) or TSSC6 may play a role in hematopoietic cell function.
Probab=44.63 E-value=8.7 Score=28.18 Aligned_cols=15 Identities=13% Similarity=0.228 Sum_probs=11.7
Q ss_pred hHHHHhccccCccccCccc
Q 023538 131 WSTIRSCLLGSKTCAKLAL 149 (281)
Q Consensus 131 ~d~iQ~~~~~~~~CCG~~g 149 (281)
...+|. .|.|||..+
T Consensus 34 l~~iqd----~FlccGk~S 48 (87)
T cd03153 34 LAAIQD----TFLCCGKKS 48 (87)
T ss_pred Hhcccc----hhhhccCCC
Confidence 344565 999999988
No 51
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=40.27 E-value=11 Score=26.24 Aligned_cols=14 Identities=14% Similarity=0.325 Sum_probs=1.5
Q ss_pred hhhccccCCCccccc
Q 023538 242 QNTRRAQTDYPYGEN 256 (281)
Q Consensus 242 ~~~~~~~~~~~~~~~ 256 (281)
.+.|++++. +|..+
T Consensus 34 yR~rkkdEG-SY~l~ 47 (64)
T PF01034_consen 34 YRMRKKDEG-SYDLD 47 (64)
T ss_dssp ---S-------SS--
T ss_pred HHHHhcCCC-CccCC
Confidence 344444444 45554
No 52
>COG0713 NuoK NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]
Probab=39.67 E-value=1e+02 Score=23.34 Aligned_cols=76 Identities=12% Similarity=0.217 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhhheeec-cccchhhcchhHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHH--HHhh
Q 023538 17 LLASIPIIGAGLWMARS-STTCESFLQTPLLVIGFVVLIISLAGFIGACFNVAWALWVYLVVMLFLIATLMALT--IFGF 93 (281)
Q Consensus 17 ~l~G~~ll~~Giw~~~~-~~~~~~~~~~~li~iG~v~~~vs~lGc~Ga~~es~~lL~~Y~~lL~vl~i~ei~~~--i~~~ 93 (281)
.+++.+++++|++.... ..-+.-+.+.-++.-++-+-++++--..|-.... .|.++.+.+...|.+.| ++..
T Consensus 8 l~laa~LF~IGl~Gv~~rrN~i~~LmSiElmlNAvnl~~Va~~~y~~~~~gQ-----vfaifvitvAAaE~aVGLailv~ 82 (100)
T COG0713 8 LILAALLFTIGLYGLLTRRNLIVMLMSIELMLNAVNLNFVAFSSYLGDLDGQ-----VFAIFVITVAAAEAAVGLAILVA 82 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777775544 2111011122255555555555555555554443 67777788888886664 4444
Q ss_pred heec
Q 023538 94 VVTS 97 (281)
Q Consensus 94 ~~~~ 97 (281)
.||.
T Consensus 83 ~yR~ 86 (100)
T COG0713 83 LYRR 86 (100)
T ss_pred HHHc
Confidence 4553
No 53
>PF06195 DUF996: Protein of unknown function (DUF996); InterPro: IPR010397 This is a family of uncharacterised bacterial and archaeal proteins.
Probab=38.64 E-value=1.8e+02 Score=23.40 Aligned_cols=18 Identities=6% Similarity=-0.016 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhhhheeec
Q 023538 16 TLLASIPIIGAGLWMARS 33 (281)
Q Consensus 16 f~l~G~~ll~~Giw~~~~ 33 (281)
+.+.|.+++-+|+.-..+
T Consensus 2 l~ivG~IL~Lial~~is~ 19 (139)
T PF06195_consen 2 LSIVGLILLLIALKEISD 19 (139)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 568899999999987766
No 54
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=37.25 E-value=1.4e+02 Score=23.66 Aligned_cols=29 Identities=21% Similarity=0.501 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHH-HHHHHHhcCcchhHHH
Q 023538 45 LLVIGFVVLIISL-AGFIGACFNVAWALWV 73 (281)
Q Consensus 45 li~iG~v~~~vs~-lGc~Ga~~es~~lL~~ 73 (281)
++.+|.++.++++ ++.++.+++++.+...
T Consensus 74 ~~~l~~~~~~~a~~~~~~~~~~~~~~~~~~ 103 (172)
T PF13903_consen 74 FLILGLLLLLFAFVFALIGFCKRSYTLYLF 103 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccchhHH
Confidence 5666776666664 4777888877755444
No 55
>KOG2443 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.14 E-value=38 Score=31.51 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=16.2
Q ss_pred CCccccccccccccCcch
Q 023538 250 DYPYGENQMTKVRPRWDY 267 (281)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~ 267 (281)
..++|+|.|.+|-+++|-
T Consensus 213 fwVFgTnVMVtVAt~~D~ 230 (362)
T KOG2443|consen 213 FWVFGTNVMVTVATSLDA 230 (362)
T ss_pred EEEecCceEEEeecccCC
Confidence 589999999999999984
No 56
>PF13127 DUF3955: Protein of unknown function (DUF3955)
Probab=34.94 E-value=1.5e+02 Score=20.39 Aligned_cols=46 Identities=22% Similarity=0.384 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhhhheeec-cccchhhcchh--HHHHHHHHHHHHHH
Q 023538 11 FLNLFTLLASIPIIGAGLWMARS-STTCESFLQTP--LLVIGFVVLIISLA 58 (281)
Q Consensus 11 ~~N~lf~l~G~~ll~~Giw~~~~-~~~~~~~~~~~--li~iG~v~~~vs~l 58 (281)
....++.++|++.+.+..-.-.+ +.+ ..+.-| ++-+|.+.+++|+.
T Consensus 5 ~l~~~~~llg~~~l~i~~~~~syVd~~--G~L~EpFfLiPlg~l~~~~g~~ 53 (63)
T PF13127_consen 5 ILSLILLLLGVVCLFIFNIIGSYVDED--GVLHEPFFLIPLGYLFLLIGII 53 (63)
T ss_pred HHHHHHHHHHHHHHHHHhcccceECCC--CeEecccHHHHHHHHHHHHHHH
Confidence 44556666777666554433222 211 112222 55566655555544
No 57
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=32.85 E-value=56 Score=25.81 Aligned_cols=25 Identities=24% Similarity=0.281 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhe
Q 023538 6 NTVIGFLNLFTLLASIPIIGAGLWM 30 (281)
Q Consensus 6 k~~L~~~N~lf~l~G~~ll~~Giw~ 30 (281)
+|.++.+.++.+++|++|++.++-.
T Consensus 36 NysiL~Ls~vvlvi~~~LLgrsi~A 60 (125)
T PF15048_consen 36 NYSILALSFVVLVISFFLLGRSIQA 60 (125)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHh
Confidence 3455555555555555555555543
No 58
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=32.55 E-value=85 Score=21.37 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 023538 45 LLVIGFVVLIISLAGFIGAC 64 (281)
Q Consensus 45 li~iG~v~~~vs~lGc~Ga~ 64 (281)
+.++|+..++.++.|.|.+.
T Consensus 36 ~~~~g~~ll~~g~~g~Cp~~ 55 (66)
T PF11127_consen 36 LGFVGAMLLVTGITGFCPLY 55 (66)
T ss_pred HHHHHHHHHHHHHHCcCHhH
Confidence 56667777777777766543
No 59
>KOG4753 consensus Predicted membrane protein [Function unknown]
Probab=31.94 E-value=30 Score=27.06 Aligned_cols=14 Identities=21% Similarity=0.558 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHHH
Q 023538 44 PLLVIGFVVLIISL 57 (281)
Q Consensus 44 ~li~iG~v~~~vs~ 57 (281)
+++++|+++++=|+
T Consensus 86 ~f~V~G~L~FiPGf 99 (124)
T KOG4753|consen 86 FFFVLGILLFIPGF 99 (124)
T ss_pred EEehhhhHhcccch
Confidence 36666666665443
No 60
>PRK07946 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=31.28 E-value=65 Score=26.75 Aligned_cols=46 Identities=24% Similarity=0.268 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhhhheeeccccchh-hcchhHHHHHHHHHHHHHH
Q 023538 12 LNLFTLLASIPIIGAGLWMARSSTTCES-FLQTPLLVIGFVVLIISLA 58 (281)
Q Consensus 12 ~N~lf~l~G~~ll~~Giw~~~~~~~~~~-~~~~~li~iG~v~~~vs~l 58 (281)
.|++..+...+++++|+|+.... ++.+ .+...++.-|+.+++++.=
T Consensus 3 ~~l~~~i~~gvL~~~G~Ylll~r-nLir~iiGl~il~~~vnLlii~~G 49 (163)
T PRK07946 3 ANLGLLVAIGVLTSAGVYLLLER-SLTRMLLGLLLIGNGVNLLILTAG 49 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47788888888999999987642 2212 2223366666655555544
No 61
>PF07062 Clc-like: Clc-like; InterPro: IPR010761 Clc proteins are a nine-member gene family of chloride channels that have diverse roles in the plasma membrane and in intracellular organelles, especially membrane excitability and the maintenance of osmotic balance [, ]. This family contains a number of Clc-like proteins that are approximately 250 residues long and their homologues. ; GO: 0016021 integral to membrane
Probab=30.48 E-value=1.4e+02 Score=25.90 Aligned_cols=20 Identities=10% Similarity=0.160 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 023538 9 IGFLNLFTLLASIPIIGAGL 28 (281)
Q Consensus 9 L~~~N~lf~l~G~~ll~~Gi 28 (281)
+.++.+++.++|+++..+|+
T Consensus 3 ~~~~s~vl~lig~~L~~~al 22 (211)
T PF07062_consen 3 LLVFSFVLILIGLILTFIAL 22 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888887
No 62
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=30.05 E-value=1.3e+02 Score=21.54 Aligned_cols=12 Identities=17% Similarity=0.565 Sum_probs=5.2
Q ss_pred HHHHHHHHHhhh
Q 023538 17 LLASIPIIGAGL 28 (281)
Q Consensus 17 ~l~G~~ll~~Gi 28 (281)
.++|++++..|+
T Consensus 49 ~v~gl~llv~G~ 60 (82)
T PF11239_consen 49 VVVGLALLVAGV 60 (82)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 63
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=29.60 E-value=50 Score=18.25 Aligned_cols=14 Identities=14% Similarity=0.373 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHH
Q 023538 76 VVMLFLIATLMALT 89 (281)
Q Consensus 76 ~lL~vl~i~ei~~~ 89 (281)
.+++++|+..++.|
T Consensus 7 alivVLFILLiIvG 20 (24)
T PF09680_consen 7 ALIVVLFILLIIVG 20 (24)
T ss_pred hhHHHHHHHHHHhc
Confidence 34455555555544
No 64
>PF11384 DUF3188: Protein of unknown function (DUF3188); InterPro: IPR021524 This bacterial family of proteins has no known function.
Probab=28.28 E-value=66 Score=21.10 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=14.6
Q ss_pred hhcchhHHHHHHHHHHHHHHH
Q 023538 39 SFLQTPLLVIGFVVLIISLAG 59 (281)
Q Consensus 39 ~~~~~~li~iG~v~~~vs~lG 59 (281)
...+.|.+.+|+++++.+..+
T Consensus 22 ~i~~lP~~~~Gi~Lii~g~v~ 42 (49)
T PF11384_consen 22 RIQALPAILIGIGLIISGGVG 42 (49)
T ss_pred chhccHHHHHhHHHHhhhhhh
Confidence 344677888888777776654
No 65
>PF07846 Metallothio_Cad: Metallothionein family; InterPro: IPR012484 The sequence making up family 7 of the metallothionein superfamily are found repeated in metallothionein proteins expressed by two Tetrahymena species. Metallothioneins are low molecular mass, cysteine-rich metal-binding proteins that are thought to be involved in the regulation of levels of trace metals, and detoxification of these metals when present in excess []. Some of the metallothioneins found in this family (for example, Q8T6B3 from SWISSPROT) are known to be induced by cadmium and are thought to be involved in the cellular sequestration of toxic metal ions. The high proportion of cysteine residues allows the metal ions to be bound by the formation of clusters of metal-thiolate complexes []. Tetrahymena spp. metallothioneins differ from other eukaryotic metallothioneins mainly in the length of their sequences and in the cysteine-containing motifs they exhibit. ; GO: 0046870 cadmium ion binding
Probab=27.94 E-value=42 Score=17.75 Aligned_cols=6 Identities=17% Similarity=0.623 Sum_probs=2.8
Q ss_pred ccCccc
Q 023538 144 CAKLAL 149 (281)
Q Consensus 144 CCG~~g 149 (281)
|||.+-
T Consensus 2 ccG~na 7 (21)
T PF07846_consen 2 CCGVNA 7 (21)
T ss_pred ccCCCC
Confidence 455443
No 66
>PRK10209 acid-resistance membrane protein; Provisional
Probab=27.29 E-value=3.6e+02 Score=22.61 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhhhheeecc-ccchhhcchhHHHHHHHHHHHHHHHHHHHhcC
Q 023538 15 FTLLASIPIIGAGLWMARSS-TTCESFLQTPLLVIGFVVLIISLAGFIGACFN 66 (281)
Q Consensus 15 lf~l~G~~ll~~Giw~~~~~-~~~~~~~~~~li~iG~v~~~vs~lGc~Ga~~e 66 (281)
.+.+.|++.+.+|+....++ .+ .....+.+|..+++-|+....++.+.
T Consensus 23 ~~li~Gil~ivlGi~~l~~P~~~----~~~~~~~~g~~ll~~Gi~~l~~~~~~ 71 (190)
T PRK10209 23 AIQIIAVLLFIGGLLCLSFPFVS----GDALSTVVGILLICSGIALIVGLFAN 71 (190)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35778999999999887652 11 01114668888888888877776643
No 67
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=27.23 E-value=1.3e+02 Score=20.51 Aligned_cols=22 Identities=9% Similarity=0.094 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Q 023538 223 NIVMLVVLIGIYSIGCCAFQNTR 245 (281)
Q Consensus 223 ~i~v~~lqi~~~~~a~~l~~~~~ 245 (281)
+.++.++-+++++|+.. +|++.
T Consensus 10 ~~Vi~l~vl~~~~Ftl~-IRri~ 31 (58)
T PF13314_consen 10 ILVIILIVLFGASFTLF-IRRIL 31 (58)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHH
Confidence 33444455566666653 44443
No 68
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=27.10 E-value=85 Score=19.01 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 023538 45 LLVIGFVVLIISLAGFIGACF 65 (281)
Q Consensus 45 li~iG~v~~~vs~lGc~Ga~~ 65 (281)
-+++|.+++++++-|.....+
T Consensus 12 Gl~~g~~l~~~~~tG~~~~f~ 32 (37)
T PF13706_consen 12 GLILGLLLFVIFLTGAVMVFR 32 (37)
T ss_pred HHHHHHHHHHHHHHhHHHHHH
Confidence 466777777777777776654
No 69
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=26.64 E-value=3.3e+02 Score=21.63 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHhhhheeec
Q 023538 11 FLNLFTLLASIPIIGAGLWMARS 33 (281)
Q Consensus 11 ~~N~lf~l~G~~ll~~Giw~~~~ 33 (281)
.++.++..+|.++++.|+-..+.
T Consensus 31 ~~~~~l~~lGall~~~gii~fvA 53 (145)
T PF09925_consen 31 WLARILLYLGALLLGLGIILFVA 53 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777888888888866544
No 70
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=26.59 E-value=70 Score=18.06 Aligned_cols=13 Identities=15% Similarity=0.375 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHH
Q 023538 77 VMLFLIATLMALT 89 (281)
Q Consensus 77 lL~vl~i~ei~~~ 89 (281)
+++++|++.++.+
T Consensus 10 livVLFILLIIig 22 (26)
T TIGR01732 10 LIVVLFILLVIVG 22 (26)
T ss_pred HHHHHHHHHHHhh
Confidence 4455555554444
No 71
>PRK05715 NADH:ubiquinone oxidoreductase subunit K; Validated
Probab=26.13 E-value=2.8e+02 Score=20.58 Aligned_cols=73 Identities=10% Similarity=0.113 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhhheeeccccchhh-cchhHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 023538 17 LLASIPIIGAGLWMARSSTTCESF-LQTPLLVIGFVVLIISLAGFIGACFNVAWALWVYLVVMLFLIATLMALTIFGFV 94 (281)
Q Consensus 17 ~l~G~~ll~~Giw~~~~~~~~~~~-~~~~li~iG~v~~~vs~lGc~Ga~~es~~lL~~Y~~lL~vl~i~ei~~~i~~~~ 94 (281)
.+.+.+++.+|++......+.... ...-++..|+.+++++..... +...=..+....+++-++|.+.|....+
T Consensus 8 ~~~~~~lf~iGl~~~~~~~~li~~Ll~lE~m~~~v~l~~~~~~~~~-----~~~~~~~l~l~~ivi~~~E~algLsllv 81 (100)
T PRK05715 8 LILAAILFCIGLVGLLLRRNAIVVLMSIELMLNAVNLNFVAFSSYL-----GDLDGQVFAFFVITVAAAEAAIGLAILL 81 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677787765431111111 122256666655555544333 1111234555667777788777655443
No 72
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=25.92 E-value=90 Score=32.62 Aligned_cols=35 Identities=14% Similarity=0.083 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhheecCCCccc
Q 023538 69 WALWVYLVVMLFLIATLMALTIFGFVVTSRGGGVQ 103 (281)
Q Consensus 69 ~lL~~Y~~lL~vl~i~ei~~~i~~~~~~~~i~~~~ 103 (281)
|.-..|.++|+++.++.+++.+.+|+....+.+.+
T Consensus 137 c~R~~l~~~L~~~~~~il~g~i~aF~~n~~l~~~v 171 (806)
T PF05478_consen 137 CRRGCLGILLLLLTLIILFGVICAFVANQQLSTGV 171 (806)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666777777777777777777665444443
No 73
>PF15345 TMEM51: Transmembrane protein 51
Probab=25.83 E-value=1e+02 Score=27.07 Aligned_cols=14 Identities=29% Similarity=0.581 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHH
Q 023538 45 LLVIGFVVLIISLA 58 (281)
Q Consensus 45 li~iG~v~~~vs~l 58 (281)
|++.|+++++++++
T Consensus 64 LVG~Gv~LLLLSIC 77 (233)
T PF15345_consen 64 LVGSGVALLLLSIC 77 (233)
T ss_pred hhhHHHHHHHHHHH
Confidence 89999988888875
No 74
>COG1971 Predicted membrane protein [Function unknown]
Probab=25.75 E-value=3.4e+02 Score=23.16 Aligned_cols=43 Identities=23% Similarity=0.235 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHH
Q 023538 45 LLVIGFVVLIISLAGFIGACFNVAWALWVYLVVMLFLIATLMAL 88 (281)
Q Consensus 45 li~iG~v~~~vs~lGc~Ga~~es~~lL~~Y~~lL~vl~i~ei~~ 88 (281)
.+.+|.+.++.+.+|..=. +.-..++.-|.=++.-++++-+..
T Consensus 139 av~iG~~T~il~~~G~~IG-~~~g~~~g~~ae~lgGiiLI~~G~ 181 (190)
T COG1971 139 AVAIGLITLILSALGAIIG-RKLGKFLGKYAEILGGIILIGIGV 181 (190)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5777777777777775533 333345666666666665554443
No 75
>MTH00192 ND4L NADH dehydrogenase subunit 4L; Provisional
Probab=25.42 E-value=2.6e+02 Score=20.85 Aligned_cols=74 Identities=18% Similarity=0.169 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhhhheeec-cccchhhc-chhHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 023538 16 TLLASIPIIGAGLWMARS-STTCESFL-QTPLLVIGFVVLIISLAGFIGACFNVAWALWVYLVVMLFLIATLMALTIFGF 93 (281)
Q Consensus 16 f~l~G~~ll~~Giw~~~~-~~~~~~~~-~~~li~iG~v~~~vs~lGc~Ga~~es~~lL~~Y~~lL~vl~i~ei~~~i~~~ 93 (281)
+.+.+..++..|++.... ..+....+ ..-.+..|+.+.++.+....+-. .=..+.++++++.++|.+.|....
T Consensus 5 ~l~~~~~lf~~g~~~~~~~r~~ll~~LlslE~mll~v~l~~~~~~~~~~~~-----~g~~~~l~~l~~a~cEaalGLsll 79 (99)
T MTH00192 5 YLLVSIILFTTGVSGIIINKNNIILILMSIELILLAISYLLIVYSVTLDNL-----LGIIFSLMVLTVAAAESAIGLAIL 79 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch-----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777765543 22211111 11266666665555554333211 112566667778888977766554
Q ss_pred h
Q 023538 94 V 94 (281)
Q Consensus 94 ~ 94 (281)
+
T Consensus 80 v 80 (99)
T MTH00192 80 V 80 (99)
T ss_pred H
Confidence 4
No 76
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=25.36 E-value=66 Score=22.53 Aligned_cols=20 Identities=40% Similarity=0.627 Sum_probs=15.4
Q ss_pred HHHHHHHHH---HHHHHHHHhhh
Q 023538 9 IGFLNLFTL---LASIPIIGAGL 28 (281)
Q Consensus 9 L~~~N~lf~---l~G~~ll~~Gi 28 (281)
++..|++++ +.|+.++++|-
T Consensus 1 l~~ln~lwl~~~l~~l~v~tigP 23 (77)
T PF04854_consen 1 LVVLNLLWLLFTLAGLPVFTIGP 23 (77)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888 88888877776
No 77
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=25.36 E-value=2.1e+02 Score=25.59 Aligned_cols=17 Identities=24% Similarity=0.649 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023538 46 LVIGFVVLIISLAGFIG 62 (281)
Q Consensus 46 i~iG~v~~~vs~lGc~G 62 (281)
++++++.|+.+++|.+|
T Consensus 28 ~~~~~~~F~~~ml~~~G 44 (284)
T PF12805_consen 28 LVLALLTFFFGMLGVYG 44 (284)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33344444444444444
No 78
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=24.70 E-value=2e+02 Score=22.94 Aligned_cols=32 Identities=6% Similarity=0.148 Sum_probs=23.3
Q ss_pred hcCcchhHHHHHHHHHHHHHHHHHHHHHhhhe
Q 023538 64 CFNVAWALWVYLVVMLFLIATLMALTIFGFVV 95 (281)
Q Consensus 64 ~~es~~lL~~Y~~lL~vl~i~ei~~~i~~~~~ 95 (281)
..+.+.++..|++++++++.+-+..+++.+..
T Consensus 51 ~s~~~pl~~~~~~~~~~v~~~~~~~avv~~~~ 82 (237)
T PF02932_consen 51 TSYAKPLDGWYFICTMFVFSASLEFAVVVYNI 82 (237)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhccccchhhhHHHHhhhhhhhh
Confidence 34568899999888888877766666665554
No 79
>PRK02935 hypothetical protein; Provisional
Probab=24.43 E-value=3.3e+02 Score=20.94 Aligned_cols=30 Identities=17% Similarity=0.438 Sum_probs=20.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHH
Q 023538 42 QTPLLVIGFVVLIISLAGFIGACFNVAWALWVYLV 76 (281)
Q Consensus 42 ~~~li~iG~v~~~vs~lGc~Ga~~es~~lL~~Y~~ 76 (281)
+..++.+|.+++-+|++ +++++.+..+|.+
T Consensus 16 aL~lvfiG~~vMy~Gif-----f~~~~~~m~ifm~ 45 (110)
T PRK02935 16 ALSLVFIGFIVMYLGIF-----FRESIIIMTIFML 45 (110)
T ss_pred HHHHHHHHHHHHHHHHH-----hcccHHHHHHHHH
Confidence 34488888888888744 2777776655554
No 80
>TIGR02046 sdhC_b558_fam succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family. This family consists of the succinate dehydrogenase subunit C of Bacillus subtilis, designated cytochrome b-558, and related sequences that include a fumarate reductase subunit C. This subfamily is only weakly similar to the main group of succinate dehydrogenase cytochrome b subunits described by Pfam model pfam01127.
Probab=24.21 E-value=3.1e+02 Score=23.60 Aligned_cols=52 Identities=15% Similarity=0.102 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcccccc
Q 023538 206 AGVLEDVRRDWHKLSVLNIVMLVVLIGIYSIGCCAFQNTRRAQTDYPYGENQ 257 (281)
Q Consensus 206 ~~l~~~l~~~~~~i~~~~i~v~~lqi~~~~~a~~l~~~~~~~~~~~~~~~~~ 257 (281)
+...++++++...+-+.-+++++.-++=++.+..+..+-|++..++.|..|.
T Consensus 38 n~ya~~L~~~~~~~~~~~~~L~~~~l~H~~~a~~l~~~nr~~ar~~~y~~~~ 89 (214)
T TIGR02046 38 NAAAHFLRSLPFRLWLERIILFVPFILHAVYAVILSIRNKRNARPYRYMHKG 89 (214)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCceeeC
Confidence 5556667665432333334444444444556666655555533355666553
No 81
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=23.65 E-value=26 Score=31.86 Aligned_cols=25 Identities=20% Similarity=0.458 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Q 023538 221 VLNIVMLVVLIGIYSIGCCAFQNTR 245 (281)
Q Consensus 221 ~~~i~v~~lqi~~~~~a~~l~~~~~ 245 (281)
+.+++++++.+++.+++||++|+.|
T Consensus 150 IpaVVI~~iLLIA~iIa~icyrrkR 174 (290)
T PF05454_consen 150 IPAVVIAAILLIAGIIACICYRRKR 174 (290)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3566666677777778888887443
No 82
>PF14340 DUF4395: Domain of unknown function (DUF4395)
Probab=23.54 E-value=1.3e+02 Score=23.85 Aligned_cols=31 Identities=16% Similarity=0.325 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHhhhhcc
Q 023538 216 WHKLSVLNIVMLVVLIG-IYSIGCCAFQNTRR 246 (281)
Q Consensus 216 ~~~i~~~~i~v~~lqi~-~~~~a~~l~~~~~~ 246 (281)
..++.++.++.+.+|.. |+++.|.++...+|
T Consensus 99 ~~i~~~~~~~aA~le~~fGfClGC~~y~~l~r 130 (131)
T PF14340_consen 99 GYILAAILLVAAFLEAAFGFCLGCFMYYQLKR 130 (131)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHh
Confidence 34556777777888887 99999988877654
No 83
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=23.24 E-value=1.5e+02 Score=23.36 Aligned_cols=13 Identities=15% Similarity=0.363 Sum_probs=5.0
Q ss_pred HHHHHHhhhhccc
Q 023538 235 SIGCCAFQNTRRA 247 (281)
Q Consensus 235 ~~a~~l~~~~~~~ 247 (281)
++++++.|++|+.
T Consensus 83 li~y~irR~~Kk~ 95 (122)
T PF01102_consen 83 LISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHS---
T ss_pred HHHHHHHHHhccC
Confidence 3455555554443
No 84
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=23.10 E-value=2.9e+02 Score=21.45 Aligned_cols=32 Identities=16% Similarity=0.367 Sum_probs=19.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHH
Q 023538 42 QTPLLVIGFVVLIISLAGFIGACFNVAWALWVYLVVM 78 (281)
Q Consensus 42 ~~~li~iG~v~~~vs~lGc~Ga~~es~~lL~~Y~~lL 78 (281)
+..++.+|.+++.+|++ +++++.++.+|.++=
T Consensus 15 al~lif~g~~vmy~gi~-----f~~~~~im~ifmllG 46 (114)
T PF11023_consen 15 ALSLIFIGMIVMYIGIF-----FKASPIIMVIFMLLG 46 (114)
T ss_pred HHHHHHHHHHHHhhhhh-----hcccHHHHHHHHHHH
Confidence 34478888888887642 356666555544433
No 85
>MTH00180 ND4L NADH dehydrogenase subunit 4L; Provisional
Probab=23.02 E-value=3.3e+02 Score=20.35 Aligned_cols=75 Identities=15% Similarity=0.129 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhhhheeec-cccchhhc-chhHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 023538 16 TLLASIPIIGAGLWMARS-STTCESFL-QTPLLVIGFVVLIISLAGFIGACFNVAWALWVYLVVMLFLIATLMALTIFGF 93 (281)
Q Consensus 16 f~l~G~~ll~~Giw~~~~-~~~~~~~~-~~~li~iG~v~~~vs~lGc~Ga~~es~~lL~~Y~~lL~vl~i~ei~~~i~~~ 93 (281)
+.+.|..++..|++.... ..+....+ ..-.+..+..+..+.+....+.. -=..+..+.+.+.++|.+.|....
T Consensus 5 ~l~~~~~lf~~gl~~~~~~r~~ll~~LlslE~mll~v~l~~~~~~~~~~~~-----~g~~~~l~~l~~aacEaalGLsll 79 (99)
T MTH00180 5 YLTVGIILFILGVLGIVLNRSNLIIMLMSIELMLLAISLLFLINSVAIDNL-----IGQIFTIMILTVAAAESAIGLAIL 79 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777776543 22211111 11155566544444433333211 112456666778888977776555
Q ss_pred he
Q 023538 94 VV 95 (281)
Q Consensus 94 ~~ 95 (281)
+.
T Consensus 80 V~ 81 (99)
T MTH00180 80 VA 81 (99)
T ss_pred HH
Confidence 43
No 86
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=22.59 E-value=4.1e+02 Score=26.41 Aligned_cols=87 Identities=14% Similarity=0.095 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHhhhheeecc-ccchhhcchhHHHHHHHHHHHHHHHHHHHhcCcc-hhHHHHHHHHHHHHHHHHH
Q 023538 10 GFLNLFTLLASIPIIGAGLWMARSS-TTCESFLQTPLLVIGFVVLIISLAGFIGACFNVA-WALWVYLVVMLFLIATLMA 87 (281)
Q Consensus 10 ~~~N~lf~l~G~~ll~~Giw~~~~~-~~~~~~~~~~li~iG~v~~~vs~lGc~Ga~~es~-~lL~~Y~~lL~vl~i~ei~ 87 (281)
.+.+++..+++.+.+.+-+++.... .. ....|.+.+..+.++.++..+.-.++-.+ -++.-+++.++.+-+.-++
T Consensus 399 vfi~Li~tiI~P~ti~~iIylIv~~I~~---s~~~piIsLiLLAiIyGL~aIl~iL~~r~wq~i~wmiiYll~~P~~n~v 475 (527)
T PF03142_consen 399 VFIDLIGTIILPATIVFIIYLIVVSIFS---SDPVPIISLILLAIIYGLPAILFILRSRRWQYIGWMIIYLLALPFFNFV 475 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhheehcc---cccccchHHHHHHHHHHHHhhhheecccHHHHHHHHHHHHHHHHHHHhH
Confidence 3455555555555555545433221 11 00122333333333334333333344222 2232233333334444555
Q ss_pred HHHHhhheecCC
Q 023538 88 LTIFGFVVTSRG 99 (281)
Q Consensus 88 ~~i~~~~~~~~i 99 (281)
+-+.+|.+-|++
T Consensus 476 LpiYSfwn~DDF 487 (527)
T PF03142_consen 476 LPIYSFWNFDDF 487 (527)
T ss_pred hhheeEEEeccc
Confidence 566666665554
No 87
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=22.45 E-value=2e+02 Score=27.47 Aligned_cols=16 Identities=25% Similarity=0.733 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 023538 45 LLVIGFVVLIISLAGF 60 (281)
Q Consensus 45 li~iG~v~~~vs~lGc 60 (281)
+++.|++++++++++.
T Consensus 400 ~~~~~~i~~i~~~~~~ 415 (511)
T PF09972_consen 400 LIILGIILLILGFILL 415 (511)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555555
No 88
>PF15471 TMEM171: Transmembrane protein family 171
Probab=22.44 E-value=1e+02 Score=27.76 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhee
Q 023538 9 IGFLNLFTLLASIPIIGAGLWMA 31 (281)
Q Consensus 9 L~~~N~lf~l~G~~ll~~Giw~~ 31 (281)
..+|-++|+..|+++-.+|+|+-
T Consensus 111 ~LIFGFLFLTSGmLISvLGiWVP 133 (319)
T PF15471_consen 111 FLIFGFLFLTSGMLISVLGIWVP 133 (319)
T ss_pred HHHHHHHHHhhhhhhhhheeeec
Confidence 34678899999999999999974
No 89
>PF13572 DUF4134: Domain of unknown function (DUF4134)
Probab=22.44 E-value=2.7e+02 Score=21.03 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC-----cchhHHHHHHHHHHHHHHHH
Q 023538 45 LLVIGFVVLIISLAGFIGACFN-----VAWALWVYLVVMLFLIATLM 86 (281)
Q Consensus 45 li~iG~v~~~vs~lGc~Ga~~e-----s~~lL~~Y~~lL~vl~i~ei 86 (281)
+.++|+++-++|-+=.+--+.+ ++-.+..+..+++++.+.++
T Consensus 47 ~yaI~aVvglIGai~VY~k~~~Gd~dv~k~i~~w~GaciFli~~a~~ 93 (98)
T PF13572_consen 47 MYAIGAVVGLIGAIRVYIKWNNGDQDVKKSIMSWFGACIFLIVAATV 93 (98)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777766666666655543 45566666666666665543
No 90
>MTH00001 ND4L NADH dehydrogenase subunit 4L; Provisional
Probab=22.24 E-value=3e+02 Score=20.53 Aligned_cols=73 Identities=15% Similarity=0.149 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhhheeec-cccchhhc-chhHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 023538 17 LLASIPIIGAGLWMARS-STTCESFL-QTPLLVIGFVVLIISLAGFIGACFNVAWALWVYLVVMLFLIATLMALTIFGFV 94 (281)
Q Consensus 17 ~l~G~~ll~~Giw~~~~-~~~~~~~~-~~~li~iG~v~~~vs~lGc~Ga~~es~~lL~~Y~~lL~vl~i~ei~~~i~~~~ 94 (281)
.+.+..++..|++.... ..+....+ ..-.+..++.+.+..+....+. ..=..+..+.+.+.++|.+.|....+
T Consensus 6 l~~~~~lf~~gl~g~~~~r~~ll~~LlslE~mll~v~~~~~~~~~~~~~-----~~g~~~~l~~l~~aacEaalGLsllv 80 (99)
T MTH00001 6 LILVVILFLLGIWGIILNRGHFIIMLVSIELVLLSTFFLFLINSIEIDL-----LIEQIFTIMGLTIAAAESAIGLAIMV 80 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777765533 22211111 1115555554444333333321 11135666677788889877765554
No 91
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=22.06 E-value=1.3e+02 Score=26.81 Aligned_cols=26 Identities=27% Similarity=0.568 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhh
Q 023538 69 WALWVYLVVMLFLIATLMALTIFGFV 94 (281)
Q Consensus 69 ~lL~~Y~~lL~vl~i~ei~~~i~~~~ 94 (281)
.+|.+|..+|++++++-++..+|.+-
T Consensus 35 rcLY~fvLlL~i~ivvNLalTiWIlk 60 (292)
T KOG3950|consen 35 RCLYTFVLLLMILIVVNLALTIWILK 60 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999998864
No 92
>PRK08389 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=21.48 E-value=3.8e+02 Score=20.60 Aligned_cols=77 Identities=14% Similarity=0.152 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhhhheeeccccchh-hcchhHHHHHHHHHHHHHHHHHHHh-----------cCcchhHHHHHHHHHHHH
Q 023538 15 FTLLASIPIIGAGLWMARSSTTCES-FLQTPLLVIGFVVLIISLAGFIGAC-----------FNVAWALWVYLVVMLFLI 82 (281)
Q Consensus 15 lf~l~G~~ll~~Giw~~~~~~~~~~-~~~~~li~iG~v~~~vs~lGc~Ga~-----------~es~~lL~~Y~~lL~vl~ 82 (281)
.+.+.+.+++++|+|....+.+... ....-++.-|+.++++++-...|.. ...-.+=-.+.+..+++-
T Consensus 4 ~~~~~~~~Lf~iGlygil~rrnli~~liglei~~~av~L~lv~~g~~~~~~~Pi~~~~~~~~~~~dplpQalvLtaIVI~ 83 (114)
T PRK08389 4 AYYFGAIALVLIGLYGVLVKKNLLKIIIGLDIMETGVNLLLISIGYVSGRSAPILSEGITPSNYVDPIPQALVLTAIVIG 83 (114)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccCccccccCCCchhHHHHHHHHHHH
Confidence 4566778888999996654212112 2223367777777777665443311 012233344555555555
Q ss_pred HHHHHHHHH
Q 023538 83 ATLMALTIF 91 (281)
Q Consensus 83 i~ei~~~i~ 91 (281)
..|.+.+..
T Consensus 84 ~a~~A~~La 92 (114)
T PRK08389 84 VSTTALALS 92 (114)
T ss_pred HHHHHHHHH
Confidence 555554443
No 93
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=20.91 E-value=2.6e+02 Score=24.85 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCcch
Q 023538 44 PLLVIGFVVLIISLAGFIGACFNVAW 69 (281)
Q Consensus 44 ~li~iG~v~~~vs~lGc~Ga~~es~~ 69 (281)
-++++|.++++.++++.+-.-|-.+.
T Consensus 228 i~~vlG~ll~lr~~i~YikVrrm~~~ 253 (262)
T KOG4812|consen 228 IFLVLGLLLFLRGFINYIKVRRMEEK 253 (262)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhHHHH
Confidence 38999999999999998876655443
No 94
>PF06168 DUF981: Protein of unknown function (DUF981); InterPro: IPR009324 This is a family of uncharacterised proteins found in bacteria and archaea.
Probab=20.66 E-value=5.4e+02 Score=21.95 Aligned_cols=44 Identities=23% Similarity=0.382 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhhhheeec-c--ccchhhcchhHHHHHHHHHHHHHH
Q 023538 15 FTLLASIPIIGAGLWMARS-S--TTCESFLQTPLLVIGFVVLIISLA 58 (281)
Q Consensus 15 lf~l~G~~ll~~Giw~~~~-~--~~~~~~~~~~li~iG~v~~~vs~l 58 (281)
.|...|+..+..|+|+..+ . .+.+-.+..|....|.+++..++.
T Consensus 44 ~f~~lG~~~litGl~~~~TWPLPgsYNIlFgd~~~lfGv~lL~~~~~ 90 (191)
T PF06168_consen 44 FFGALGLFALITGLWGTFTWPLPGSYNILFGDPWLLFGVLLLSAGLA 90 (191)
T ss_pred HHHHHHHHHHHHHHHheeeecCCCcccchHhhhHHHHHHHHHHHHHH
Confidence 4567888888889998877 3 222223455666666666666654
No 95
>PF15471 TMEM171: Transmembrane protein family 171
Probab=20.30 E-value=96 Score=27.97 Aligned_cols=24 Identities=8% Similarity=0.023 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhee
Q 023538 8 VIGFLNLFTLLASIPIIGAGLWMA 31 (281)
Q Consensus 8 ~L~~~N~lf~l~G~~ll~~Giw~~ 31 (281)
+||+|-.+++..|++|..+|.+.=
T Consensus 23 FLfvFGavllCvG~lLsIfgfqaC 46 (319)
T PF15471_consen 23 FLFVFGAVLLCVGVLLSIFGFQAC 46 (319)
T ss_pred hhHHHhHHHHHHHHHHHHhhhccc
Confidence 566777777777777777777643
No 96
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=20.11 E-value=1.5e+02 Score=20.77 Aligned_cols=18 Identities=11% Similarity=0.401 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023538 45 LLVIGFVVLIISLAGFIG 62 (281)
Q Consensus 45 li~iG~v~~~vs~lGc~G 62 (281)
+|++-+++.+++++|+.|
T Consensus 17 LIAvvLLLsIl~~lt~~a 34 (66)
T PF13179_consen 17 LIAVVLLLSILAFLTYWA 34 (66)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444444
Done!