Query 023538
Match_columns 281
No_of_seqs 178 out of 1195
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 08:33:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023538.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023538hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g8q_A CD81 antigen, extracell 99.3 3.2E-14 1.1E-18 105.4 -4.2 87 93-215 1-89 (90)
2 2jwa_A Receptor tyrosine-prote 47.0 46 0.0016 20.4 4.8 24 219-242 14-37 (44)
3 3rko_K NADH-quinone oxidoreduc 15.8 3E+02 0.01 19.3 7.8 74 17-95 8-82 (100)
4 1dme_A CD6 metallothionein-1; 13.6 1E+02 0.0035 16.7 1.7 8 164-171 1-8 (28)
5 2ks1_B Epidermal growth factor 13.6 1.8E+02 0.0063 17.6 3.1 9 225-233 20-28 (44)
6 1oed_C Acetylcholine receptor 12.7 3.9E+02 0.013 22.5 6.1 84 8-93 2-86 (260)
7 2klu_A T-cell surface glycopro 12.7 3E+02 0.01 18.4 4.1 22 221-242 13-34 (70)
8 1kvp_A SPV4 capsid protein VP1 12.7 49 0.0017 30.8 0.3 24 247-270 362-388 (497)
9 3arc_X Photosystem II PSBX pro 12.5 2.5E+02 0.0086 16.6 3.6 15 86-100 23-37 (39)
10 3bz1_X Photosystem II PSBX pro 11.9 3E+02 0.01 17.2 3.7 15 86-100 33-47 (50)
No 1
>1g8q_A CD81 antigen, extracellular domain; alpha helical, immune system; 1.60A {Homo sapiens} SCOP: a.135.1.1 PDB: 1iv5_A
Probab=99.31 E-value=3.2e-14 Score=105.40 Aligned_cols=87 Identities=8% Similarity=0.145 Sum_probs=56.2
Q ss_pred hheecCCCccccc--CccccccccCCCchhhhccCCCccchHHHHhccccCccccCcccccccccccccccccCCCcCCC
Q 023538 93 FVVTSRGGGVQVP--GRVYKEYHLQDYSPWLRNRVKDPNYWSTIRSCLLGSKTCAKLALWTPLDYLERDMTPIQSGCCKP 170 (281)
Q Consensus 93 ~~~~~~i~~~~~~--~~~~~~y~~~~~~~~~~~~~~~~~~~d~iQ~~~~~~~~CCG~~g~~~~Dw~~~~~~~vP~SCC~~ 170 (281)
|++++++.+.+.+ .+++++|..+. ++.+.+.+||.+|+ +|+|||++| |+||.+ ..||+|||..
T Consensus 1 fv~~~~v~~~l~~~l~~~~~~y~~~~------~~~~~~~~~d~iQ~----~l~CCG~~~--~~Dw~~---~~vP~ScC~~ 65 (90)
T 1g8q_A 1 FVNKDQIAKDVKQFYDQALQQAVVDD------DANNAKAVVKTFHE----TLDCCGSST--LTALTT---SVLKNNLCPS 65 (90)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHH----HHTCCSCTT--CGGGHH---HHHHTTCSCT
T ss_pred CccHHHHHHHHHHHHHHHHHHhccCC------CchhHHHHHHHHHH----hhcCCCCCC--hhhhcc---CCCCCCCCCC
Confidence 3556666555543 45566653211 01113679999999 999999999 999964 3589999953
Q ss_pred CCCCCCCCCCCCCCCCccccCCCCCceeeeCcchHHHHHHHHHHH
Q 023538 171 PTSCNYNMPTMAQDPDCYRWNNAPTLLCYECDSCKAGVLEDVRRD 215 (281)
Q Consensus 171 ~~~C~~~~~~~~~~~~C~~~~~~~~~gc~~~~GC~~~l~~~l~~~ 215 (281)
... |. . ..|. +||.+++.++++++
T Consensus 66 ~~~-------------~~--~-----~~~~-~GC~~~i~~~~~~n 89 (90)
T 1g8q_A 66 GSN-------------II--S-----NLFK-EDCHQKIDDLFSGK 89 (90)
T ss_dssp TCC-------------HH--H-----HHTS-CCHHHHHHHHHHTC
T ss_pred CCC-------------Cc--c-----cCcc-CCcHHHHHHHHHhC
Confidence 211 11 0 1121 78889999999865
No 2
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=47.05 E-value=46 Score=20.44 Aligned_cols=24 Identities=13% Similarity=0.063 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 023538 219 LSVLNIVMLVVLIGIYSIGCCAFQ 242 (281)
Q Consensus 219 i~~~~i~v~~lqi~~~~~a~~l~~ 242 (281)
+++..++++++-++++++.+++-|
T Consensus 14 Ia~~vVGvll~vi~~l~~~~~~RR 37 (44)
T 2jwa_A 14 IISAVVGILLVVVLGVVFGILIKR 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhheeh
Confidence 344444444454555555555544
No 3
>3rko_K NADH-quinone oxidoreductase subunit K; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=15.77 E-value=3e+02 Score=19.32 Aligned_cols=74 Identities=9% Similarity=0.057 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhhheeeccccchh-hcchhHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHhhhe
Q 023538 17 LLASIPIIGAGLWMARSSTTCES-FLQTPLLVIGFVVLIISLAGFIGACFNVAWALWVYLVVMLFLIATLMALTIFGFVV 95 (281)
Q Consensus 17 ~l~G~~ll~~Giw~~~~~~~~~~-~~~~~li~iG~v~~~vs~lGc~Ga~~es~~lL~~Y~~lL~vl~i~ei~~~i~~~~~ 95 (281)
.+.+..++.+|++......+... ....-++..++.+.++.+.-..+ + ..-..+..+.+++-++|.+.|....+.
T Consensus 8 ~~~~~~lf~iGl~g~~~r~~ll~~LlslE~m~l~v~l~l~~~~~~~~----~-~~~~~~~l~~l~~aa~E~alGLallv~ 82 (100)
T 3rko_K 8 LILAAILFVLGLTGLVIRRNLLFMLIGLEIMINASALAFVVAGSYWG----Q-TDGQVMYILAISLAAAEASIGLALLLQ 82 (100)
T ss_dssp HHHHHHHHHHHHHHHHHCCBHHHHHHHHHHHHHHHHHHHHHHHHHTT----C-SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----C-cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777764433212111 11222555555555444432221 1 112235666677788887776655543
No 4
>1dme_A CD6 metallothionein-1; NMR {Callinectes sapidus} SCOP: g.46.1.1 PDB: 1dmf_A 1j5m_A
Probab=13.64 E-value=1e+02 Score=16.75 Aligned_cols=8 Identities=25% Similarity=0.879 Sum_probs=5.6
Q ss_pred CCCcCCCC
Q 023538 164 QSGCCKPP 171 (281)
Q Consensus 164 P~SCC~~~ 171 (281)
|+.||.+.
T Consensus 1 PdPCC~dk 8 (28)
T 1dme_A 1 PGPCCNDK 8 (28)
T ss_dssp CCCSTTSC
T ss_pred CCCccCCe
Confidence 67798653
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=13.58 E-value=1.8e+02 Score=17.64 Aligned_cols=9 Identities=22% Similarity=0.501 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 023538 225 VMLVVLIGI 233 (281)
Q Consensus 225 ~v~~lqi~~ 233 (281)
+++++-+++
T Consensus 20 Gv~~~~ii~ 28 (44)
T 2ks1_B 20 ALLLLLVVA 28 (44)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344333344
No 6
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A
Probab=12.72 E-value=3.9e+02 Score=22.53 Aligned_cols=84 Identities=10% Similarity=0.152 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHh-hhheeeccccchhhcchhHHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHH
Q 023538 8 VIGFLNLFTLLASIPIIGA-GLWMARSSTTCESFLQTPLLVIGFVVLIISLAGFIGACFNVAWALWVYLVVMLFLIATLM 86 (281)
Q Consensus 8 ~L~~~N~lf~l~G~~ll~~-Giw~~~~~~~~~~~~~~~li~iG~v~~~vs~lGc~Ga~~es~~lL~~Y~~lL~vl~i~ei 86 (281)
+.+++|+++=.+.+.++.+ |.|+-.+ .. ++......+.++..+++.-+-.-.-...++..++..|+.+.++++.+-+
T Consensus 2 l~Y~~nliiP~~li~~ls~~~F~Lp~~-~g-ekv~l~it~lLs~tvfl~~~~~~lP~tS~~vPli~~y~~~~m~~v~~s~ 79 (260)
T 1oed_C 2 LFYVINFITPCVLISFLASLAFYLPAE-SG-EKMSTAISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVI 79 (260)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH-CT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHH
T ss_pred eEEEEhHHHHHHHHHHHHHHHeeeCCC-CC-CeEeehHHHHHHHHHHHHHHHHHCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 3577888875555544444 3343322 11 1211111333333333333333344455567788888777766666655
Q ss_pred HHHHHhh
Q 023538 87 ALTIFGF 93 (281)
Q Consensus 87 ~~~i~~~ 93 (281)
+..++..
T Consensus 80 ~~tv~vl 86 (260)
T 1oed_C 80 VNCGIVL 86 (260)
T ss_dssp HHHHHHH
T ss_pred HHHHhee
Confidence 5555543
No 7
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=12.71 E-value=3e+02 Score=18.36 Aligned_cols=22 Identities=23% Similarity=-0.046 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 023538 221 VLNIVMLVVLIGIYSIGCCAFQ 242 (281)
Q Consensus 221 ~~~i~v~~lqi~~~~~a~~l~~ 242 (281)
+++-++.++-+.|+.+-|+.-+
T Consensus 13 vlGg~~~lll~~glcI~ccvkc 34 (70)
T 2klu_A 13 VLGGVAGLLLFIGLGIFFSVRS 34 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHhHHHHHHHHHHHHHHHhhHH
Confidence 3334444555566666666633
No 8
>1kvp_A SPV4 capsid protein VP1; bacteriophage SPV4 coat protein, chimera, icosahedral virus; 27.00A {Enterobacteria phage PHIX174} SCOP: b.121.5.1
Probab=12.69 E-value=49 Score=30.83 Aligned_cols=24 Identities=4% Similarity=-0.378 Sum_probs=17.8
Q ss_pred ccCCCcccccccccc--ccCcch-hHh
Q 023538 247 AQTDYPYGENQMTKV--RPRWDY-YWW 270 (281)
Q Consensus 247 ~~~~~~~~~~~~~~~--~~~~~~-~~~ 270 (281)
..-+|+++.|++--. .+|||+ ||=
T Consensus 362 ~~ltY~~~l~~~~sk~~~tr~Df~~~P 388 (497)
T 1kvp_A 362 FPPTATKEIQYLNAKGALTYTDIAGDP 388 (497)
T ss_pred cCCchhhhcchhhhcccccccccccCh
Confidence 334588899966555 999999 874
No 9
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=12.50 E-value=2.5e+02 Score=16.64 Aligned_cols=15 Identities=0% Similarity=-0.064 Sum_probs=8.4
Q ss_pred HHHHHHhhheecCCC
Q 023538 86 MALTIFGFVVTSRGG 100 (281)
Q Consensus 86 i~~~i~~~~~~~~i~ 100 (281)
++++++....+|++.
T Consensus 23 i~~ali~VSq~D~v~ 37 (39)
T 3arc_X 23 TFAVLIAISQIDKVQ 37 (39)
T ss_dssp HHHHHHHHHHHSCCC
T ss_pred HHHHheeEeccCccc
Confidence 555555555566554
No 10
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=11.92 E-value=3e+02 Score=17.22 Aligned_cols=15 Identities=0% Similarity=-0.064 Sum_probs=8.0
Q ss_pred HHHHHHhhheecCCC
Q 023538 86 MALTIFGFVVTSRGG 100 (281)
Q Consensus 86 i~~~i~~~~~~~~i~ 100 (281)
++++++....+|++.
T Consensus 33 i~~aLi~VSq~D~v~ 47 (50)
T 3bz1_X 33 TFAVLIAISQIDKVQ 47 (50)
T ss_dssp HHHHHHHHHTTCCCC
T ss_pred HHHHheeeeccCccc
Confidence 444555555555554
Done!