BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023539
(281 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QKI|A Chain A, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|B Chain B, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|C Chain C, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|D Chain D, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|E Chain E, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|F Chain F, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|G Chain G, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
pdb|1QKI|H Chain H, X-Ray Structure Of Human Glucose 6-Phosphate Dehydrogenase
(Variant Canton R459l) Complexed With Structural Nadp+
Length = 514
Score = 235 bits (599), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 123/263 (46%), Positives = 170/263 (64%), Gaps = 14/263 (5%)
Query: 14 LRNDSFSRDNDNVPETGCLSIIVLGASGDLAKKKTFPALFNLYRQGFLQSNEVHIFGYAR 73
LR + F D + +T I++GASGDLAKKK +P ++ L+R G L N I GYAR
Sbjct: 15 LREELFQGDAFHQSDTHIF--IIMGASGDLAKKKIYPTIWWLFRDGLLPEN-TFIVGYAR 71
Query: 74 TKISDDELRNRIRGYLINDKSAPGQSEQVSEFLQLIKYVSGSYDTEEGFQLLDKEISAHE 133
++++ ++R + + K+ P + ++ +F YV+G YD +Q L+ ++A
Sbjct: 72 SRLTVADIRKQSEPFF---KATPEEKLKLEDFFARNSYVAGQYDDAASYQRLNSHMNALH 128
Query: 134 SSKNSLEGSSRRLFYFALPPSVYPSVSRMIKKCCMNRSDLGGWTRIVVEKPFGKDLDSSE 193
L + RLFY ALPP+VY +V++ I + CM++ GW RI+VEKPFG+DL SS+
Sbjct: 129 -----LGSQANRLFYLALPPTVYEAVTKNIHESCMSQI---GWNRIIVEKPFGRDLQSSD 180
Query: 194 KLSAQIGELFEEPQIYRIDHYLGKELVQNLLVLRFANRMFLPLWNRDNIDNVQIVFREDF 253
+LS I LF E QIYRIDHYLGKE+VQNL+VLRFANR+F P+WNRDNI V + F+E F
Sbjct: 181 RLSNHISSLFREDQIYRIDHYLGKEMVQNLMVLRFANRIFGPIWNRDNIACVILTFKEPF 240
Query: 254 GTEGRGGYFDEYGYALQMRSNFL 276
GTEGRGGYFDE+G + N L
Sbjct: 241 GTEGRGGYFDEFGIIRDVMQNHL 263
>pdb|2BH9|A Chain A, X-Ray Structure Of A Deletion Variant Of Human Glucose 6-
Phosphate Dehydrogenase Complexed With Structural And
Coenzyme Nadp
pdb|2BHL|A Chain A, X-Ray Structure Of Human Glucose-6-Phosphate Dehydrogenase
(Deletion Variant) Complexed With Glucose-6-Phosphate
pdb|2BHL|B Chain B, X-Ray Structure Of Human Glucose-6-Phosphate Dehydrogenase
(Deletion Variant) Complexed With Glucose-6-Phosphate
Length = 489
Score = 234 bits (598), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 118/242 (48%), Positives = 162/242 (66%), Gaps = 12/242 (4%)
Query: 35 IVLGASGDLAKKKTFPALFNLYRQGFLQSNEVHIFGYARTKISDDELRNRIRGYLINDKS 94
I++GASGDLAKKK +P ++ L+R G L N I GYAR++++ ++R + + K+
Sbjct: 9 IIMGASGDLAKKKIYPTIWWLFRDGLLPEN-TFIVGYARSRLTVADIRKQSEPFF---KA 64
Query: 95 APGQSEQVSEFLQLIKYVSGSYDTEEGFQLLDKEISAHESSKNSLEGSSRRLFYFALPPS 154
P + ++ +F YV+G YD +Q L+ ++A L + RLFY ALPP+
Sbjct: 65 TPEEKLKLEDFFARNSYVAGQYDDAASYQRLNSHMNALH-----LGSQANRLFYLALPPT 119
Query: 155 VYPSVSRMIKKCCMNRSDLGGWTRIVVEKPFGKDLDSSEKLSAQIGELFEEPQIYRIDHY 214
VY +V++ I + CM++ GW RI+VEKPFG+DL SS++LS I LF E QIYRIDHY
Sbjct: 120 VYEAVTKNIHESCMSQI---GWNRIIVEKPFGRDLQSSDRLSNHISSLFREDQIYRIDHY 176
Query: 215 LGKELVQNLLVLRFANRMFLPLWNRDNIDNVQIVFREDFGTEGRGGYFDEYGYALQMRSN 274
LGKE+VQNL+VLRFANR+F P+WNRDNI V + F+E FGTEGRGGYFDE+G + N
Sbjct: 177 LGKEMVQNLMVLRFANRIFGPIWNRDNIACVILTFKEPFGTEGRGGYFDEFGIIRDVMQN 236
Query: 275 FL 276
L
Sbjct: 237 HL 238
>pdb|4E9I|A Chain A, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4E9I|B Chain B, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4E9I|C Chain C, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4E9I|D Chain D, Glucose-6-P Dehydrogenase (Apo Form) From Trypanosoma
Cruzi
pdb|4EM5|A Chain A, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
pdb|4EM5|B Chain B, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
pdb|4EM5|C Chain C, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
pdb|4EM5|D Chain D, Trypanosoma Cruzi Glucose-6-P Dehydrogenase In Complex
With G6p
Length = 541
Score = 232 bits (592), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 131/283 (46%), Positives = 178/283 (62%), Gaps = 14/283 (4%)
Query: 1 MGSGQWIMEKRSSLRNDSFSRDNDNV-PE--TGCLSIIVLGASGDLAKKKTFPALFNLYR 57
M S + + + LR + R D V PE + L+I+VLGASGDLAKKKTFPALF LY
Sbjct: 21 MASMENAKKVAAELRGEVCERIPDAVSPELRSRALTIVVLGASGDLAKKKTFPALFQLYC 80
Query: 58 QGFLQSNEVHIFGYARTKISDDEL--RNRIRGYL--INDKSAPGQSEQVSEFLQLIKYVS 113
G L +V+I GYAR+ + D E ++ + G+ ++++ V FL+ I Y++
Sbjct: 81 NGML-PRDVNILGYARSTMEDVEKWKKDTLAGFFTRLDERGC-----HVGNFLRRISYMT 134
Query: 114 GSYDTEEGFQLLDKEISAHESSKNSLEGSSRRLFYFALPPSVYPSVSRMIKKCCMNRSDL 173
GSYD +E F L++ I E + E RLFY ALPPSV+ V R + K M + +L
Sbjct: 135 GSYDRDEDFARLNERILRMEEAFQGPEKGGNRLFYLALPPSVFVGVCRGLSKGAMQKPEL 194
Query: 174 GGWTRIVVEKPFGKDLDSSEKLSAQIGELFEEPQIYRIDHYLGKELVQNLLVLRFANRMF 233
G W R++VEKPFG+D ++SE+LS Q+ LF E Q++RIDHYLGKE+VQN++V RFANR+F
Sbjct: 195 G-WVRLIVEKPFGRDTETSEQLSNQLKPLFNERQVFRIDHYLGKEMVQNIIVTRFANRVF 253
Query: 234 LPLWNRDNIDNVQIVFREDFGTEGRGGYFDEYGYALQMRSNFL 276
LWN ++I VQI F+E GT GRGGYFD G + N L
Sbjct: 254 SALWNSNSIACVQITFKEKIGTAGRGGYFDSIGIIRDVIQNHL 296
>pdb|1E77|A Chain A, Complex Of Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides With
Substrate
pdb|1H9A|A Chain A, Complex Of Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From L. Mesenteroides With Coenzyme Nadp
pdb|1H9B|A Chain A, Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
Length = 485
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 133/241 (55%), Gaps = 9/241 (3%)
Query: 34 IIVLGASGDLAKKKTFPALFNLYRQGFLQSNEVHIFGYARTKISDDELRNRIRGYLINDK 93
+ G +GDLAK+K +P++FNLY++G+LQ + I G AR ++DDE + +R + K
Sbjct: 8 VTFFGGTGDLAKRKLYPSVFNLYKKGYLQKH-FAIVGTARQALNDDEFKQLVRDSI---K 63
Query: 94 SAPGQSEQVSEFLQLIKYVSGSYDTEEGFQLLDKEISAHESSKNSLEGSSRRLFYFALPP 153
Q F++ Y + + +L + I E + + + R+FY ++ P
Sbjct: 64 DFTDDQAQAEAFIEHFSYRAHDVTDAASYAVLKEAI---EEAADKFDIDGNRIFYMSVAP 120
Query: 154 SVYPSVSRMIKKCCMNRSDLGGWTRIVVEKPFGKDLDSSEKLSAQIGELFEEPQIYRIDH 213
+ ++++ +K + G+ R+++EKPFG D++ +L + F++ Q++RIDH
Sbjct: 121 RFFGTIAKYLKSEGLLAD--TGYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFRIDH 178
Query: 214 YLGKELVQNLLVLRFANRMFLPLWNRDNIDNVQIVFREDFGTEGRGGYFDEYGYALQMRS 273
YLGKE+VQN+ LRF N +F WN+D I NVQ+ E G E R GY+D G L M
Sbjct: 179 YLGKEMVQNIAALRFGNPIFDAAWNKDYIKNVQVTLSEVLGVEERAGYYDTAGALLDMIQ 238
Query: 274 N 274
N
Sbjct: 239 N 239
>pdb|2DPG|A Chain A, Complex Of Inactive Mutant (H240->n) Of Glucose
6-Phosphate Dehydrogenase From Leuconostoc Mesenteroides
With Nadp+
Length = 485
Score = 159 bits (402), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 133/241 (55%), Gaps = 9/241 (3%)
Query: 34 IIVLGASGDLAKKKTFPALFNLYRQGFLQSNEVHIFGYARTKISDDELRNRIRGYLINDK 93
+ G +GDLAK+K +P++FNLY++G+LQ + I G AR ++DDE + +R + K
Sbjct: 8 VTFFGGTGDLAKRKLYPSVFNLYKKGYLQKH-FAIVGTARQALNDDEFKQLVRDSI---K 63
Query: 94 SAPGQSEQVSEFLQLIKYVSGSYDTEEGFQLLDKEISAHESSKNSLEGSSRRLFYFALPP 153
Q F++ Y + + +L + I E + + + R+FY ++ P
Sbjct: 64 DFTDDQAQAEAFIEHFSYRAHDVTDAASYAVLKEAI---EEAADKFDIDGNRIFYMSVAP 120
Query: 154 SVYPSVSRMIKKCCMNRSDLGGWTRIVVEKPFGKDLDSSEKLSAQIGELFEEPQIYRIDH 213
+ ++++ +K + G+ R+++EKPFG D++ +L + F++ Q++RIDH
Sbjct: 121 RFFGTIAKYLKSEGLLAD--TGYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFRIDH 178
Query: 214 YLGKELVQNLLVLRFANRMFLPLWNRDNIDNVQIVFREDFGTEGRGGYFDEYGYALQMRS 273
YLGKE+VQN+ LRF N +F WN+D I NVQ+ E G E R GY+D G L M
Sbjct: 179 YLGKEMVQNIAALRFGNPIFDAAWNKDYIKNVQVTLSEVLGVEERAGYYDTAGALLDMIQ 238
Query: 274 N 274
N
Sbjct: 239 N 239
>pdb|1DPG|A Chain A, Glucose 6-Phosphate Dehydrogenase From Leuconostoc
Mesenteroides
pdb|1DPG|B Chain B, Glucose 6-Phosphate Dehydrogenase From Leuconostoc
Mesenteroides
Length = 485
Score = 159 bits (402), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 133/241 (55%), Gaps = 9/241 (3%)
Query: 34 IIVLGASGDLAKKKTFPALFNLYRQGFLQSNEVHIFGYARTKISDDELRNRIRGYLINDK 93
+ G +GDLAK+K +P++FNLY++G+LQ + I G AR ++DDE + +R + K
Sbjct: 8 VTFFGGTGDLAKRKLYPSVFNLYKKGYLQKH-FAIVGTARQALNDDEFKQLVRDCI---K 63
Query: 94 SAPGQSEQVSEFLQLIKYVSGSYDTEEGFQLLDKEISAHESSKNSLEGSSRRLFYFALPP 153
Q F++ Y + + +L + I E + + + R+FY ++ P
Sbjct: 64 DFTDDQAQAEAFIEHFSYRAHDVTDAASYAVLKEAI---EEAADKFDIDGNRIFYMSVAP 120
Query: 154 SVYPSVSRMIKKCCMNRSDLGGWTRIVVEKPFGKDLDSSEKLSAQIGELFEEPQIYRIDH 213
+ ++++ +K + G+ R+++EKPFG D++ +L + F++ Q++RIDH
Sbjct: 121 RFFGTIAKYLKSEGLLAD--TGYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFRIDH 178
Query: 214 YLGKELVQNLLVLRFANRMFLPLWNRDNIDNVQIVFREDFGTEGRGGYFDEYGYALQMRS 273
YLGKE+VQN+ LRF N +F WN+D I NVQ+ E G E R GY+D G L M
Sbjct: 179 YLGKEMVQNIAALRFGNPIFDAAWNKDYIKNVQVTLSEVLGVEERAGYYDTAGALLDMIQ 238
Query: 274 N 274
N
Sbjct: 239 N 239
>pdb|1H93|A Chain A, Active Mutant (S215->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
pdb|1H94|A Chain A, Complex Of Active Mutant (S215->c) Of Glucose 6-Phosphate
Dehydrogenase From L.Mesenteroides With Coenzyme Nad
Length = 485
Score = 158 bits (400), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 133/241 (55%), Gaps = 9/241 (3%)
Query: 34 IIVLGASGDLAKKKTFPALFNLYRQGFLQSNEVHIFGYARTKISDDELRNRIRGYLINDK 93
+ G +GDLAK+K +P++FNLY++G+LQ + I G AR ++DDE + +R + K
Sbjct: 8 VTFFGGTGDLAKRKLYPSVFNLYKKGYLQKH-FAIVGTARQALNDDEFKQLVRDSI---K 63
Query: 94 SAPGQSEQVSEFLQLIKYVSGSYDTEEGFQLLDKEISAHESSKNSLEGSSRRLFYFALPP 153
Q F++ Y + + +L + I E + + + R+FY ++ P
Sbjct: 64 DFTDDQAQAEAFIEHFSYRAHDVTDAASYAVLKEAI---EEAADKFDIDGNRIFYMSVAP 120
Query: 154 SVYPSVSRMIKKCCMNRSDLGGWTRIVVEKPFGKDLDSSEKLSAQIGELFEEPQIYRIDH 213
+ ++++ +K + G+ R+++EKPFG D++ +L + F++ Q++RIDH
Sbjct: 121 RFFGTIAKYLKSEGLLAD--TGYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFRIDH 178
Query: 214 YLGKELVQNLLVLRFANRMFLPLWNRDNIDNVQIVFREDFGTEGRGGYFDEYGYALQMRS 273
YLGKE+VQN+ LRF N +F WN+D I NVQ+ E G E R GY+D G L M
Sbjct: 179 YLGKEMVQNIAALRFGNPIFDAAWNKDYIKNVQVTLCEVLGVEERAGYYDTAGALLDMIQ 238
Query: 274 N 274
N
Sbjct: 239 N 239
>pdb|1E7M|A Chain A, Active Site Mutant (D177->n) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
pdb|1E7Y|A Chain A, Active Site Mutant (D177->n) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides Complexed
With Substrate And Nadph
Length = 485
Score = 157 bits (397), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 133/241 (55%), Gaps = 9/241 (3%)
Query: 34 IIVLGASGDLAKKKTFPALFNLYRQGFLQSNEVHIFGYARTKISDDELRNRIRGYLINDK 93
+ G +GDLAK+K +P++FNLY++G+LQ + I G AR ++DDE + +R + K
Sbjct: 8 VTFFGGTGDLAKRKLYPSVFNLYKKGYLQKH-FAIVGTARQALNDDEFKQLVRDSI---K 63
Query: 94 SAPGQSEQVSEFLQLIKYVSGSYDTEEGFQLLDKEISAHESSKNSLEGSSRRLFYFALPP 153
Q F++ Y + + +L + I E + + + R+FY ++ P
Sbjct: 64 DFTDDQAQAEAFIEHFSYRAHDVTDAASYAVLKEAI---EEAADKFDIDGNRIFYMSVAP 120
Query: 154 SVYPSVSRMIKKCCMNRSDLGGWTRIVVEKPFGKDLDSSEKLSAQIGELFEEPQIYRIDH 213
+ ++++ +K + G+ R+++EKPFG D++ +L + F++ Q++RI+H
Sbjct: 121 RFFGTIAKYLKSEGLLAD--TGYNRLMIEKPFGTSYDTAAELQNDLENAFDDNQLFRINH 178
Query: 214 YLGKELVQNLLVLRFANRMFLPLWNRDNIDNVQIVFREDFGTEGRGGYFDEYGYALQMRS 273
YLGKE+VQN+ LRF N +F WN+D I NVQ+ E G E R GY+D G L M
Sbjct: 179 YLGKEMVQNIAALRFGNPIFDAAWNKDYIKNVQVTLSEVLGVEERAGYYDTAGALLDMIQ 238
Query: 274 N 274
N
Sbjct: 239 N 239
>pdb|2QF0|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|B Chain B, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|C Chain C, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|D Chain D, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|E Chain E, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|F Chain F, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|G Chain G, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|H Chain H, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|I Chain I, Structure Of The Delta Pdz Truncation Of The Degs Protease
Length = 243
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 39 ASGDLAKKKTFPALFNLYRQGFLQS--NEVHIFGYARTKISDDELRNRIRGYLINDKSAP 96
AS +LA ++ PA+ N+Y +G + N++ I I D RGY+I +K
Sbjct: 32 ASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIXDQ------RGYIITNKHVI 85
Query: 97 GQSEQVSEFLQ 107
++Q+ LQ
Sbjct: 86 NDADQIIVALQ 96
>pdb|1SOT|A Chain A, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|B Chain B, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|C Chain C, Crystal Structure Of The Degs Stress Sensor
Length = 320
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 39 ASGDLAKKKTFPALFNLYRQGFLQS--NEVHIFGYARTKISDDELRNRIRGYLINDKSAP 96
AS +LA ++ PA+ N+Y +G + N++ I I D RGY+I +K
Sbjct: 4 ASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIXDQ------RGYIITNKHVI 57
Query: 97 GQSEQVSEFLQ 107
++Q+ LQ
Sbjct: 58 NDADQIIVALQ 68
>pdb|2QF3|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF3|B Chain B, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF3|C Chain C, Structure Of The Delta Pdz Truncation Of The Degs Protease
Length = 243
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 39 ASGDLAKKKTFPALFNLYRQGFLQS--NEVHIFGYARTKISDDELRNRIRGYLINDKSAP 96
AS +LA ++ PA+ N+Y +G + N++ I I D RGY+I +K
Sbjct: 32 ASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQ------RGYIITNKHVI 85
Query: 97 GQSEQVSEFLQ 107
++Q+ LQ
Sbjct: 86 NDADQIIVALQ 96
>pdb|3B8J|A Chain A, Q191a Mutant Of Degs-Deltapdz
Length = 243
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 39 ASGDLAKKKTFPALFNLYRQGFLQS--NEVHIFGYARTKISDDELRNRIRGYLINDKSAP 96
AS +LA ++ PA+ N+Y +G + N++ I I D RGY+I +K
Sbjct: 32 ASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQ------RGYIITNKHVI 85
Query: 97 GQSEQVSEFLQ 107
++Q+ LQ
Sbjct: 86 NDADQIIVALQ 96
>pdb|2R3U|A Chain A, Crystal Structure Of The Pdz Deletion Mutant Of Degs
pdb|2R3U|B Chain B, Crystal Structure Of The Pdz Deletion Mutant Of Degs
pdb|2R3U|C Chain C, Crystal Structure Of The Pdz Deletion Mutant Of Degs
Length = 211
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 39 ASGDLAKKKTFPALFNLYRQGFLQS--NEVHIFGYARTKISDDELRNRIRGYLINDKSAP 96
AS +LA ++ PA+ N+Y +G + N++ I I D RGY+I +K
Sbjct: 4 ASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQ------RGYIITNKHVI 57
Query: 97 GQSEQVSEFLQ 107
++Q+ LQ
Sbjct: 58 NDADQIIVALQ 68
>pdb|3LGI|A Chain A, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
pdb|3LGI|B Chain B, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
pdb|3LGI|C Chain C, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
Length = 237
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 39 ASGDLAKKKTFPALFNLYRQGFLQS--NEVHIFGYARTKISDDELRNRIRGYLINDKSAP 96
AS +LA ++ PA+ N+Y +G + N++ I I D RGY+I +K
Sbjct: 20 ASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQ------RGYIITNKHVI 73
Query: 97 GQSEQVSEFLQ 107
++Q+ LQ
Sbjct: 74 NDADQIIVALQ 84
>pdb|2RCE|A Chain A, Dfp Modified Degs Delta Pdz
pdb|2RCE|B Chain B, Dfp Modified Degs Delta Pdz
pdb|2RCE|C Chain C, Dfp Modified Degs Delta Pdz
pdb|2RCE|D Chain D, Dfp Modified Degs Delta Pdz
pdb|2RCE|E Chain E, Dfp Modified Degs Delta Pdz
pdb|2RCE|F Chain F, Dfp Modified Degs Delta Pdz
pdb|2RCE|G Chain G, Dfp Modified Degs Delta Pdz
pdb|2RCE|H Chain H, Dfp Modified Degs Delta Pdz
pdb|2RCE|I Chain I, Dfp Modified Degs Delta Pdz
Length = 243
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 39 ASGDLAKKKTFPALFNLYRQGFLQS--NEVHIFGYARTKISDDELRNRIRGYLINDKSAP 96
AS +LA ++ PA+ N+Y +G + N++ I I D RGY+I +K
Sbjct: 32 ASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQ------RGYIITNKHVI 85
Query: 97 GQSEQVSEFLQ 107
++Q+ LQ
Sbjct: 86 NDADQIIVALQ 96
>pdb|3LH3|A Chain A, Dfp Modified Degs Delta Pdz
pdb|3LH3|B Chain B, Dfp Modified Degs Delta Pdz
pdb|3LH3|C Chain C, Dfp Modified Degs Delta Pdz
pdb|3LH3|D Chain D, Dfp Modified Degs Delta Pdz
pdb|3LH3|E Chain E, Dfp Modified Degs Delta Pdz
pdb|3LH3|F Chain F, Dfp Modified Degs Delta Pdz
pdb|3LH3|G Chain G, Dfp Modified Degs Delta Pdz
pdb|3LH3|H Chain H, Dfp Modified Degs Delta Pdz
pdb|3LH3|I Chain I, Dfp Modified Degs Delta Pdz
Length = 241
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 39 ASGDLAKKKTFPALFNLYRQGFLQS--NEVHIFGYARTKISDDELRNRIRGYLINDKSAP 96
AS +LA ++ PA+ N+Y +G + N++ I I D RGY+I +K
Sbjct: 30 ASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQ------RGYIITNKHVI 83
Query: 97 GQSEQVSEFLQ 107
++Q+ LQ
Sbjct: 84 NDADQIIVALQ 94
>pdb|3LH1|A Chain A, Q191a Mutant Of The Degs-Deltapdz
Length = 241
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 39 ASGDLAKKKTFPALFNLYRQGFLQS--NEVHIFGYARTKISDDELRNRIRGYLINDKSAP 96
AS +LA ++ PA+ N+Y +G + N++ I I D RGY+I +K
Sbjct: 30 ASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQ------RGYIITNKHVI 83
Query: 97 GQSEQVSEFLQ 107
++Q+ LQ
Sbjct: 84 NDADQIIVALQ 94
>pdb|3LGW|A Chain A, H198pT167V DOUBLE MUTANT OF DEGS-Deltapdz Protease
Length = 241
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 39 ASGDLAKKKTFPALFNLYRQGFLQS--NEVHIFGYARTKISDDELRNRIRGYLINDKSAP 96
AS +LA ++ PA+ N+Y +G + N++ I I D RGY+I +K
Sbjct: 30 ASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQ------RGYIITNKHVI 83
Query: 97 GQSEQVSEFLQ 107
++Q+ LQ
Sbjct: 84 NDADQIIVALQ 94
>pdb|2QGR|A Chain A, Structure Of The R178a Mutant Of Delta Pdz Degs Protease
Length = 243
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 39 ASGDLAKKKTFPALFNLYRQGFLQS--NEVHIFGYARTKISDDELRNRIRGYLINDKSAP 96
AS +LA ++ PA+ N+Y +G + N++ I I D RGY+I +K
Sbjct: 32 ASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQ------RGYIITNKHVI 85
Query: 97 GQSEQVSEFLQ 107
++Q+ LQ
Sbjct: 86 NDADQIIVALQ 96
>pdb|1SOZ|A Chain A, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|B Chain B, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|C Chain C, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1VCW|A Chain A, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|B Chain B, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|C Chain C, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|2R3Y|A Chain A, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|B Chain B, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|C Chain C, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
Length = 314
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 39 ASGDLAKKKTFPALFNLYRQGFLQS--NEVHIFGYARTKISDDELRNRIRGYLINDKSAP 96
AS +LA ++ PA+ N+Y +G + N++ I I D RGY+I +K
Sbjct: 4 ASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQ------RGYIITNKHVI 57
Query: 97 GQSEQVSEFLQ 107
++Q+ LQ
Sbjct: 58 NDADQIIVALQ 68
>pdb|3LGV|A Chain A, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|B Chain B, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|C Chain C, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|D Chain D, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|E Chain E, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|F Chain F, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|G Chain G, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|H Chain H, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|I Chain I, H198p Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 39 ASGDLAKKKTFPALFNLYRQGFLQS--NEVHIFGYARTKISDDELRNRIRGYLINDKSAP 96
AS +LA ++ PA+ N+Y +G + N++ I I D RGY+I +K
Sbjct: 30 ASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQ------RGYIITNKHVI 83
Query: 97 GQSEQVSEFLQ 107
++Q+ LQ
Sbjct: 84 NDADQIIVALQ 94
>pdb|3LGY|A Chain A, R178a Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 39 ASGDLAKKKTFPALFNLYRQGFLQS--NEVHIFGYARTKISDDELRNRIRGYLINDKSAP 96
AS +LA ++ PA+ N+Y +G + N++ I I D RGY+I +K
Sbjct: 30 ASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQ------RGYIITNKHVI 83
Query: 97 GQSEQVSEFLQ 107
++Q+ LQ
Sbjct: 84 NDADQIIVALQ 94
>pdb|1TE0|A Chain A, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
pdb|1TE0|B Chain B, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
Length = 318
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 39 ASGDLAKKKTFPALFNLYRQGFLQS--NEVHIFGYARTKISDDELRNRIRGYLINDKSAP 96
AS +LA ++ PA+ N+Y +G + N++ I I D RGY+I +K
Sbjct: 9 ASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQ------RGYIITNKHVI 62
Query: 97 GQSEQVSEFLQ 107
++Q+ LQ
Sbjct: 63 NDADQIIVALQ 73
>pdb|3LGU|A Chain A, Y162a Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 39 ASGDLAKKKTFPALFNLYRQGFLQS--NEVHIFGYARTKISDDELRNRIRGYLINDKSAP 96
AS +LA ++ PA+ N+Y +G + N++ I I D RGY+I +K
Sbjct: 30 ASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQ------RGYIITNKHVI 83
Query: 97 GQSEQVSEFLQ 107
++Q+ LQ
Sbjct: 84 NDADQIIVALQ 94
>pdb|3LGT|A Chain A, Y162aH198P DOUBLE MUTANT OF DEGS-Deltapdz Protease
Length = 241
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 39 ASGDLAKKKTFPALFNLYRQGFLQS--NEVHIFGYARTKISDDELRNRIRGYLINDKSAP 96
AS +LA ++ PA+ N+Y +G + N++ I I D RGY+I +K
Sbjct: 30 ASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQ------RGYIITNKHVI 83
Query: 97 GQSEQVSEFLQ 107
++Q+ LQ
Sbjct: 84 NDADQIIVALQ 94
>pdb|3GCN|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Omp Peptide (Yqf)
pdb|3GCO|A Chain A, Crystal Structure Of Degs H198p/d320a Mutant Modified By
Dfp In Complex With Dnrdgnvyqf Omp Peptide
pdb|3GDS|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Dnrdgnvyyf Peptide
pdb|3GDU|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDV|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
Length = 340
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 39 ASGDLAKKKTFPALFNLYRQGFLQS--NEVHIFGYARTKISDDELRNRIRGYLINDKSAP 96
AS +LA ++ PA+ N+Y +G + N++ I I D RGY+I +K
Sbjct: 30 ASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQ------RGYIITNKHVI 83
Query: 97 GQSEQVSEFLQ 107
++Q+ LQ
Sbjct: 84 NDADQIIVALQ 94
>pdb|2DI3|A Chain A, Crystal Structure Of The Transcriptional Factor Cgl2915
From Corynebacterium Glutamicum
pdb|2DI3|B Chain B, Crystal Structure Of The Transcriptional Factor Cgl2915
From Corynebacterium Glutamicum
Length = 239
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 94 SAPGQSEQVSEFLQLIKYVSGSYDTEEGFQLLDKEISAHESSK 136
+APGQ+ +S LQL+ G +D E QLL+ + H S++
Sbjct: 74 AAPGQALSLSVTLQLVTNQVGHHDIYETRQLLEGWAALHSSAE 116
>pdb|3M1G|A Chain A, The Structure Of A Putative Glutathione S-Transferase From
Corynebacterium Glutamicum
pdb|3M1G|B Chain B, The Structure Of A Putative Glutathione S-Transferase From
Corynebacterium Glutamicum
pdb|3M1G|C Chain C, The Structure Of A Putative Glutathione S-Transferase From
Corynebacterium Glutamicum
Length = 362
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 46 KKTFPALFN-LYRQGFLQSNEVHIFGYARTKISDDELRNRI--RGYLIND 92
K+ F + N +YR GF S E H Y R ++ D L +R+ R YL D
Sbjct: 190 KRIFTEVNNGVYRTGFAGSQEAHNEAYKRLWVALDWLEDRLSTRRYLXGD 239
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,314,609
Number of Sequences: 62578
Number of extensions: 331609
Number of successful extensions: 791
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 764
Number of HSP's gapped (non-prelim): 29
length of query: 281
length of database: 14,973,337
effective HSP length: 98
effective length of query: 183
effective length of database: 8,840,693
effective search space: 1617846819
effective search space used: 1617846819
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)