BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023540
(281 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TQZ|A Chain A, Solution Structure Of Necap1 Protein
Length = 133
Score = 134 bits (337), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 69/133 (51%), Positives = 90/133 (67%), Gaps = 5/133 (3%)
Query: 6 EESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDP 65
E E L V +V VY+IPPR ++ GY+ +W WTGRLR+ S I+LED
Sbjct: 4 ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDK 63
Query: 66 NSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFN 123
SGELFA V+ PG +VETV DSSRYFV++I+DGTG+ AFIG+GF +R +AFDFN
Sbjct: 64 VSGELFAQAPVEQYPG---IAVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFN 120
Query: 124 VALSDHEKYVRRE 136
V+L DH K+V++E
Sbjct: 121 VSLQDHFKWVKQE 133
>pdb|2V50|A Chain A, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
pdb|2V50|B Chain B, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
pdb|2V50|C Chain C, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
pdb|2V50|D Chain D, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
pdb|2V50|E Chain E, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
pdb|2V50|F Chain F, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
Length = 1052
Score = 33.5 bits (75), Expect = 0.13, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 62 LEDPNSGELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFN 114
L D + G LFA PG + V+DS R ++L+ E + F GFN
Sbjct: 564 LPDEDQGVLFAQVQTPPGSSAERTQVVVDSMREYLLEKESSSVSSVFTVTGFN 616
>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54
pdb|2QHM|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2a
pdb|2QHN|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1a
pdb|3TKH|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S01
pdb|3TKI|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S25
Length = 323
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 236 GVRAPKETTRHSTTDPSSDLSQIERNFPTSATSGSSKTPASGWA 279
G + P+ T+ + PS I+ N S + +S+TP SGW+
Sbjct: 272 GAKRPRVTSGGVSESPSGFSKHIQSNLDFSPVNSASRTPGSGWS 315
>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20
pdb|2HXL|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1
pdb|2HXQ|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2
pdb|2HY0|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 22
pdb|3F9N|A Chain A, Crystal Structure Of Chk1 Kinase In Complex With Inhibitor
38
Length = 322
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 236 GVRAPKETTRHSTTDPSSDLSQIERNFPTSATSGSSKTPASGWA 279
G + P+ T+ + PS I+ N S + +S+TP SGW+
Sbjct: 271 GAKRPRVTSGGVSESPSGFSKHIQSNLDFSPVNSASRTPGSGWS 314
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 78 PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFN--VALSDHEKYVRR 135
PG SV+ D + VL+ DG GK+ + FN NE D++ ++S +++ R
Sbjct: 92 PGDFSLSVKFGNDVQHFKVLR--DGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLR 149
Query: 136 ELEKESGEMSESDGHIDIHPAVNHRL--KEGETIRI 169
++E+ + + D P + L + G+ I +
Sbjct: 150 DIEQVPQQPTYVQALFDFDPQEDGELGFRRGDFIHV 185
>pdb|3OLP|A Chain A, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Multiple Human
Pathogens
pdb|3OLP|B Chain B, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Multiple Human
Pathogens
Length = 570
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 77 QPGQRENSVETVLDSSRYFVLKIEDGTGKHA 107
QP Q+ + + +++Y+VLK E G +HA
Sbjct: 33 QPAQQSDLINVAQLTAQYYVLKPEAGNAEHA 63
>pdb|3NA5|A Chain A, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Several Human
Pathogens.
pdb|3NA5|B Chain B, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Several Human
Pathogens
Length = 570
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 77 QPGQRENSVETVLDSSRYFVLKIEDGTGKHA 107
QP Q+ + + +++Y+VLK E G +HA
Sbjct: 33 QPAQQSDLINVAQLTAQYYVLKPEAGNAEHA 63
>pdb|2FUV|A Chain A, Phosphoglucomutase From Salmonella Typhimurium.
pdb|2FUV|B Chain B, Phosphoglucomutase From Salmonella Typhimurium
Length = 549
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 77 QPGQRENSVETVLDSSRYFVLKIEDGTGKHA 107
QP Q+ + + +++Y+VLK E G +HA
Sbjct: 12 QPAQQSDLINVAQLTAQYYVLKPEAGNAEHA 42
>pdb|3N84|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|C Chain C, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|D Chain D, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|E Chain E, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
pdb|3N84|F Chain F, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
23-Membered Macrocyclic Ligand Having The Sequence
Pyvnvp
Length = 112
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 78 PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFN--VALSDHEKYVRR 135
PG SV+ D + VL+ DG GK+ + FN NE D++ ++S +++ R
Sbjct: 41 PGDFSLSVKFGNDVQHFKVLR--DGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLR 98
Query: 136 ELEK 139
++E+
Sbjct: 99 DIEQ 102
>pdb|1FHS|A Chain A, The Three-Dimensional Solution Structure Of The Src
Homology Domain-2 Of The Growth Factor Receptor Bound
Protein-2, Nmr, 18 Structures
Length = 112
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 78 PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFN--VALSDHEKYVRR 135
PG SV+ D + VL+ DG GK+ + FN NE D++ ++S +++ R
Sbjct: 41 PGDFSLSVKFGNDVQHFKVLR--DGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLR 98
Query: 136 ELEK 139
++E+
Sbjct: 99 DIEQ 102
>pdb|3OVE|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Pyxn- Derived Tripeptide
Length = 117
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 78 PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFN--VALSDHEKYVRR 135
PG SV+ D + VL+ DG GK+ + FN NE D++ ++S +++ R
Sbjct: 40 PGDFSLSVKFGNDVQHFKVLR--DGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLR 97
Query: 136 ELEK 139
++E+
Sbjct: 98 DIEQ 101
>pdb|3IMD|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Flexible Ac-Py-Q-N-Nh2 Tripeptide Mimic
pdb|3IMD|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Flexible Ac-Py-Q-N-Nh2 Tripeptide Mimic
pdb|3IMJ|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Cyclopropyl-Constrained Ac-Ptyr-Ile-Asn-Nh2 Tripeptide
Mimic
pdb|3IMJ|B Chain B, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Cyclopropyl-Constrained Ac-Ptyr-Ile-Asn-Nh2 Tripeptide
Mimic
pdb|3IN7|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Cyclopropyl-Constrained Ac-Py-Q-N-Nh2 Tripeptide Mimic
pdb|3IN7|C Chain C, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Cyclopropyl-Constrained Ac-Py-Q-N-Nh2 Tripeptide Mimic
pdb|3IN8|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Flexible Ac-Ptyr-Ile-Asn-Nh2 Tripeptide Mimic
pdb|3KFJ|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Flexible Ac-py-e-n-nh2 Tripeptide Mimic
pdb|3N8M|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With
An Acyclic Ligand Having The Sequence Pyvnvp
pdb|3OV1|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Pyxn- Derived Tripeptide
pdb|3S8L|A Chain A, Protein-Ligand Interactions: Thermodynamic Effects
Associated With Increasing Hydrophobic Surface Area
pdb|3S8N|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Pyxn- Derived Tripeptide
pdb|3S8O|A Chain A, Crystal Structure Of The Grb2 Sh2 Domain In Complex With A
Pyxn- Derived Tripeptide
Length = 117
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 78 PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFN--VALSDHEKYVRR 135
PG SV+ D + VL+ DG GK+ + FN NE D++ ++S +++ R
Sbjct: 40 PGDFSLSVKFGNDVQHFKVLR--DGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLR 97
Query: 136 ELEK 139
++E+
Sbjct: 98 DIEQ 101
>pdb|1BM2|A Chain A, Grb2-Sh2 Domain In Complex With
Cyclo-[n-Alpha-Acetyl-L-Thi
Alysyl-O-Phosphotyrosyl-Valyl-Asparagyl-Valyl-Prolyl]
(Pkf273-791)
Length = 117
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 78 PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFN--VALSDHEKYVRR 135
PG SV+ D + VL+ DG GK+ + FN NE D++ ++S +++ R
Sbjct: 46 PGDFSLSVKFGNDVQHFKVLR--DGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLR 103
Query: 136 ELEK 139
++E+
Sbjct: 104 DIEQ 107
>pdb|2H46|E Chain E, Native Domain-Swapped Dimer Crystal Structure Of The Grb2
Sh2 Domain
pdb|2H5K|A Chain A, Crystal Structure Of Complex Between The Domain-Swapped
Dimeric Grb2 Sh2 Domain And Shc-Derived Ligand,
Ac-Nh-Ptyr-Val-Asn-Nh2
pdb|2H5K|B Chain B, Crystal Structure Of Complex Between The Domain-Swapped
Dimeric Grb2 Sh2 Domain And Shc-Derived Ligand,
Ac-Nh-Ptyr-Val-Asn-Nh2
pdb|2HUW|A Chain A, X-Ray Crystal Structure Of The Grb2 Sh2 Domain Complexed
To A Constrained And Cyclopropane-Derived Ligand
pdb|2HUW|B Chain B, X-Ray Crystal Structure Of The Grb2 Sh2 Domain Complexed
To A Constrained And Cyclopropane-Derived Ligand
pdb|3C7I|A Chain A, X-Ray Crystal Structure Of The Complex Between The
Grb2-Sh2 Domain And A Flexible Ligand, Fptvn
Length = 116
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 78 PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFN--VALSDHEKYVRR 135
PG SV+ D + VL+ DG GK+ + FN NE D++ ++S +++ R
Sbjct: 40 PGDFSLSVKFGNDVQHFKVLR--DGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLR 97
Query: 136 ELEK 139
++E+
Sbjct: 98 DIEQ 101
>pdb|1FYR|A Chain A, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
pdb|1FYR|B Chain B, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
pdb|1FYR|C Chain C, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
pdb|1FYR|D Chain D, Dimer Formation Through Domain Swapping In The Crystal
Structure Of The Grb2-Sh2 Ac-Pyvnv Complex
Length = 114
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 78 PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFN--VALSDHEKYVRR 135
PG SV+ D + VL+ DG GK+ + FN NE D++ ++S +++ R
Sbjct: 45 PGDFSLSVKFGNDVQHFKVLR--DGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLR 102
Query: 136 ELEK 139
++E+
Sbjct: 103 DIEQ 106
>pdb|1X0N|A Chain A, Nmr Structure Of Growth Factor Receptor Binding Protein
Sh2 Domain Complexed With The Inhibitor
pdb|1QG1|E Chain E, Growth Factor Receptor Binding Protein Sh2 Domain
Complexed With An Shc-Derived Peptide
Length = 104
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 78 PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFN--VALSDHEKYVRR 135
PG SV+ D + VL+ DG GK+ + FN NE D++ ++S +++ R
Sbjct: 37 PGDFSLSVKFGNDVQHFKVLR--DGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLR 94
Query: 136 ELEK 139
++E+
Sbjct: 95 DIEQ 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,779,571
Number of Sequences: 62578
Number of extensions: 287496
Number of successful extensions: 400
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 392
Number of HSP's gapped (non-prelim): 23
length of query: 281
length of database: 14,973,337
effective HSP length: 98
effective length of query: 183
effective length of database: 8,840,693
effective search space: 1617846819
effective search space used: 1617846819
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)