BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023541
(281 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R61|A Chain A, The Structure Of Predicted Metal-Dependent Hydrolase From
Bacillus Stearothermophilus
pdb|1R61|B Chain B, The Structure Of Predicted Metal-Dependent Hydrolase From
Bacillus Stearothermophilus
pdb|3KRV|A Chain A, The Structure Of Potential Metal-Dependent Hydrolase With
Cyclase Activity
pdb|3KRV|B Chain B, The Structure Of Potential Metal-Dependent Hydrolase With
Cyclase Activity
Length = 207
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 109/218 (50%), Gaps = 21/218 (9%)
Query: 66 QIYDITHRITSDMPSFGSKEGLGQYLWLPK--SIKNGSLANNSEMKLPSHTGTHVDAPGH 123
++YD+T I MP + +K PK +I NG + S + + HTGTH+DAP H
Sbjct: 4 KVYDVTAPIYEGMPVYKNKPE-----KQPKRTTITNGYV-TESRIDMDVHTGTHIDAPLH 57
Query: 124 VFDHYFDAGYDVDTLDLGVLNGPALLVDVPR-DKNITAEVMESLNIPRGVRRVIFRTLNT 182
+ + G +T+ L L GP L D+ + IT + + L+I G V+F+T N+
Sbjct: 58 MVE----GGATFETIPLNDLVGPCKLFDLTHVNDRITKDDIAHLDIQEG-DFVLFKTKNS 112
Query: 183 DRKLMFKREFDSSYVGFMKDGARWLVQNTDIKLVGIDYLSAAAHDDLLPSHYEFLEGREV 242
F+ F ++ +D AR+L + I+ VGID L + P+H V
Sbjct: 113 -----FEDAFHFEFIFVAEDAARYLA-DKQIRGVGIDALGIERAQEGHPTHKTLFSAG-V 165
Query: 243 ILVEGLKLDGVPAGLYNIHCLHLRLLGAEGSPIRCILI 280
I++EGL+L VP G Y + L+L+G + +P R +L
Sbjct: 166 IIIEGLRLKDVPEGRYFMVAAPLKLVGTDAAPARVLLF 203
>pdb|4J0N|A Chain A, Crystal Structure Of A Manganese Dependent Isatin
Hydrolase
pdb|4J0N|B Chain B, Crystal Structure Of A Manganese Dependent Isatin
Hydrolase
Length = 263
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 75/193 (38%), Gaps = 21/193 (10%)
Query: 108 MKLPSHTGTHVDAPGH-VFDHYFDAGYDVDTLDLGVLNGPALLVDVPRDKN------ITA 160
M L H+GTH DAP H + + G+ DTLD+ L P ++D ++ +TA
Sbjct: 68 MVLGEHSGTHFDAPHHWITGKDYSDGF-TDTLDVQRLIAPVNVIDCSKESAADPDFLLTA 126
Query: 161 EVMESLNIPRGV----RRVIFRT-----LNTDRKLMFKREFDSSYVGFMKDGARWLVQNT 211
+++++ G V+ RT + + E G D +L+
Sbjct: 127 DLIKAWEAEHGEIGAGEWVVMRTDWDKRAGDEAAFLNADETGPHSPGPTPDAIEYLLSKK 186
Query: 212 DI----KLVGIDYLSAAAHDDLLPSHYEFLEGREVILVEGLKLDGVPAGLYNIHCLHLRL 267
+ + +G D A + P+H L LD +PA + L++
Sbjct: 187 IVGWGSQCIGTDAGQAGGMEPPFPAHNLLHRDNCFGLASLANLDKLPAKGAILIAAPLKI 246
Query: 268 LGAEGSPIRCILI 280
GSPIR + +
Sbjct: 247 ERGTGSPIRALAL 259
>pdb|3KG7|A Chain A, Dehydratase Domain From Curh Module Of Curacin Polyketide
Synthase
pdb|3KG7|B Chain B, Dehydratase Domain From Curh Module Of Curacin Polyketide
Synthase
pdb|3KG7|C Chain C, Dehydratase Domain From Curh Module Of Curacin Polyketide
Synthase
pdb|3KG7|D Chain D, Dehydratase Domain From Curh Module Of Curacin Polyketide
Synthase
Length = 293
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 67 IYDITHRITSDMPSFGSKEGLGQYLWLPKSIKNGSLANNSEMKLPSHTGTHVDAPGHVFD 126
+ D R+T D+ F S G+ W P +K +L++ + PS +V+ P V +
Sbjct: 204 LIDACTRLTPDLFDFSSDSGV---FWAPWRVKEXTLSHPT----PSRFYAYVEEPSRVNE 256
Query: 127 HYFDAGYDVDTLD-----LGVLNG 145
YD+ LD G +NG
Sbjct: 257 QLQTRSYDIQLLDETGQAFGRING 280
>pdb|2VHU|A Chain A, P4 Protein From Bacteriophage Phi12 K241c Mutant In
Complex With Adp And Mgcl
pdb|2VHU|B Chain B, P4 Protein From Bacteriophage Phi12 K241c Mutant In
Complex With Adp And Mgcl
pdb|2VHU|C Chain C, P4 Protein From Bacteriophage Phi12 K241c Mutant In
Complex With Adp And Mgcl
Length = 331
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 24/117 (20%)
Query: 106 SEMKLPSHTGTHVDAPGHVFDHYFDAGYDVD----TLDLGVLNGPALLVDVPRDKNITAE 161
++++ + H DAPG FDH V+ L +GV +G A++ D + I A
Sbjct: 11 AKLRAAQYAAFHTDAPGSWFDHTSGVLESVEDGTPVLAIGVESGDAIVFD-KNAQRIVAY 69
Query: 162 VMESLNIPRGVRRVIFRTLNTDRKLMFKREFDSSYVGFMKDGAR-WLVQNTDIKLVG 217
+S+ G V+ + N GFMK G R WLV T +LVG
Sbjct: 70 KEKSVKAEDGSVSVV-QVEN----------------GFMKQGHRGWLVDLTG-ELVG 108
>pdb|2VHT|A Chain A, P4 Protein From Bacteriophage Phi12 R279a Mutant In
Complex With Atp
pdb|2VHT|B Chain B, P4 Protein From Bacteriophage Phi12 R279a Mutant In
Complex With Atp
pdb|2VHT|C Chain C, P4 Protein From Bacteriophage Phi12 R279a Mutant In
Complex With Atp
Length = 331
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 24/117 (20%)
Query: 106 SEMKLPSHTGTHVDAPGHVFDHYFDAGYDVD----TLDLGVLNGPALLVDVPRDKNITAE 161
++++ + H DAPG FDH V+ L +GV +G A++ D + I A
Sbjct: 11 AKLRAAQYAAFHTDAPGSWFDHTSGVLESVEDGTPVLAIGVESGDAIVFD-KNAQRIVAY 69
Query: 162 VMESLNIPRGVRRVIFRTLNTDRKLMFKREFDSSYVGFMKDGAR-WLVQNTDIKLVG 217
+S+ G V+ + N GFMK G R WLV T +LVG
Sbjct: 70 KEKSVKAEDGSVSVV-QVEN----------------GFMKQGHRGWLVDLTG-ELVG 108
>pdb|2VHC|A Chain A, P4 Protein From Bacteriophage Phi12 N234g Mutant In
Complex With Ampcpp And Mn
pdb|2VHC|B Chain B, P4 Protein From Bacteriophage Phi12 N234g Mutant In
Complex With Ampcpp And Mn
pdb|2VHC|C Chain C, P4 Protein From Bacteriophage Phi12 N234g Mutant In
Complex With Ampcpp And Mn
Length = 331
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 24/117 (20%)
Query: 106 SEMKLPSHTGTHVDAPGHVFDHYFDAGYDVD----TLDLGVLNGPALLVDVPRDKNITAE 161
++++ + H DAPG FDH V+ L +GV +G A++ D + I A
Sbjct: 11 AKLRAAQYAAFHTDAPGSWFDHTSGVLESVEDGTPVLAIGVESGDAIVFD-KNAQRIVAY 69
Query: 162 VMESLNIPRGVRRVIFRTLNTDRKLMFKREFDSSYVGFMKDGAR-WLVQNTDIKLVG 217
+S+ G V+ + N GFMK G R WLV T +LVG
Sbjct: 70 KEKSVKAEDGSVSVV-QVEN----------------GFMKQGHRGWLVDLTG-ELVG 108
>pdb|2VHJ|A Chain A, P4 Protein From Bacteriophage Phi12 S252a Mutant In
Complex With Adp
pdb|2VHJ|B Chain B, P4 Protein From Bacteriophage Phi12 S252a Mutant In
Complex With Adp
pdb|2VHJ|C Chain C, P4 Protein From Bacteriophage Phi12 S252a Mutant In
Complex With Adp
pdb|2VHQ|A Chain A, P4 Protein From Bacteriophage Phi12 S252a Mutant In
Complex With Atp And Mg
pdb|2VHQ|B Chain B, P4 Protein From Bacteriophage Phi12 S252a Mutant In
Complex With Atp And Mg
pdb|2VHQ|C Chain C, P4 Protein From Bacteriophage Phi12 S252a Mutant In
Complex With Atp And Mg
Length = 331
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 24/117 (20%)
Query: 106 SEMKLPSHTGTHVDAPGHVFDHYFDAGYDVD----TLDLGVLNGPALLVDVPRDKNITAE 161
++++ + H DAPG FDH V+ L +GV +G A++ D + I A
Sbjct: 11 AKLRAAQYAAFHTDAPGSWFDHTSGVLESVEDGTPVLAIGVESGDAIVFD-KNAQRIVAY 69
Query: 162 VMESLNIPRGVRRVIFRTLNTDRKLMFKREFDSSYVGFMKDGAR-WLVQNTDIKLVG 217
+S+ G V+ + N GFMK G R WLV T +LVG
Sbjct: 70 KEKSVKAEDGSVSVV-QVEN----------------GFMKQGHRGWLVDLTG-ELVG 108
>pdb|1W44|A Chain A, P4 Protein From Bacteriophage Phi12 In Complex With Adp
pdb|1W44|B Chain B, P4 Protein From Bacteriophage Phi12 In Complex With Adp
pdb|1W44|C Chain C, P4 Protein From Bacteriophage Phi12 In Complex With Adp
pdb|1W46|A Chain A, P4 Protein From Bacteriophage Phi12 In Complex With Adp
And Mg
pdb|1W46|B Chain B, P4 Protein From Bacteriophage Phi12 In Complex With Adp
And Mg
pdb|1W46|C Chain C, P4 Protein From Bacteriophage Phi12 In Complex With Adp
And Mg
pdb|1W47|A Chain A, P4 Protein From Bacteriophage Phi12 In Complex With Adp
And Mn
pdb|1W47|B Chain B, P4 Protein From Bacteriophage Phi12 In Complex With Adp
And Mn
pdb|1W47|C Chain C, P4 Protein From Bacteriophage Phi12 In Complex With Adp
And Mn
pdb|1W48|A Chain A, P4 Protein From Bacteriophage Phi12 In Complex With Ampcpp
pdb|1W48|B Chain B, P4 Protein From Bacteriophage Phi12 In Complex With Ampcpp
pdb|1W48|C Chain C, P4 Protein From Bacteriophage Phi12 In Complex With Ampcpp
pdb|1W49|A Chain A, P4 Protein From Bacteriophage Phi12 In Complex With Ampcpp
And Mg
pdb|1W49|B Chain B, P4 Protein From Bacteriophage Phi12 In Complex With Ampcpp
And Mg
pdb|1W49|C Chain C, P4 Protein From Bacteriophage Phi12 In Complex With Ampcpp
And Mg
pdb|1W4A|A Chain A, P4 Protein From Phi12 In Complex With Ampcpp And Mn
pdb|1W4A|B Chain B, P4 Protein From Phi12 In Complex With Ampcpp And Mn
pdb|1W4A|C Chain C, P4 Protein From Phi12 In Complex With Ampcpp And Mn
pdb|1W4B|A Chain A, P4 Protein From Phi12 In Complex With Product (Ampcpp Mg
22c)
pdb|1W4B|B Chain B, P4 Protein From Phi12 In Complex With Product (Ampcpp Mg
22c)
pdb|1W4B|C Chain C, P4 Protein From Phi12 In Complex With Product (Ampcpp Mg
22c)
pdb|1W4C|A Chain A, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|B Chain B, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|C Chain C, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|D Chain D, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|E Chain E, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|F Chain F, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|G Chain G, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|H Chain H, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|I Chain I, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|J Chain J, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|K Chain K, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|L Chain L, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|M Chain M, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|N Chain N, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|O Chain O, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|P Chain P, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|Q Chain Q, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|R Chain R, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|S Chain S, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|T Chain T, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|U Chain U, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|V Chain V, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|W Chain W, P4 Protein From Bacteriophage Phi12 Apo State
pdb|1W4C|X Chain X, P4 Protein From Bacteriophage Phi12 Apo State
Length = 331
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 24/117 (20%)
Query: 106 SEMKLPSHTGTHVDAPGHVFDHYFDAGYDVD----TLDLGVLNGPALLVDVPRDKNITAE 161
++++ + H DAPG FDH V+ L +GV +G A++ D + I A
Sbjct: 11 AKLRAAQYAAFHTDAPGSWFDHTSGVLESVEDGTPVLAIGVESGDAIVFD-KNAQRIVAY 69
Query: 162 VMESLNIPRGVRRVIFRTLNTDRKLMFKREFDSSYVGFMKDGAR-WLVQNTDIKLVG 217
+S+ G V+ + N GFMK G R WLV T +LVG
Sbjct: 70 KEKSVKAEDGSVSVV-QVEN----------------GFMKQGHRGWLVDLTG-ELVG 108
>pdb|3ESF|A Chain A, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
pdb|3ESF|B Chain B, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
pdb|3ESF|C Chain C, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
pdb|3ESF|D Chain D, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase
Tbsodb2 From Trypanosoma Brucei
Length = 197
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 188 FKREFDSSYVGFMKDGARWLVQNTDIKLVGI 218
FK EF ++ VG G WLVQ+T K + +
Sbjct: 109 FKEEFTNAAVGHFGSGWAWLVQDTTTKKLKV 139
>pdb|1DLM|A Chain A, Structure Of Catechol 1,2-Dioxygenase From Acinetobacter
Calcoaceticus Native Data
pdb|1DLM|B Chain B, Structure Of Catechol 1,2-Dioxygenase From Acinetobacter
Calcoaceticus Native Data
pdb|1DLQ|A Chain A, Structure Of Catechol 1,2-Dioxygenase From Acinetobacter
Sp. Adp1 Inhibited By Bound Mercury
pdb|1DLQ|B Chain B, Structure Of Catechol 1,2-Dioxygenase From Acinetobacter
Sp. Adp1 Inhibited By Bound Mercury
pdb|1DLT|A Chain A, Structure Of Catechol 1,2-Dioxygenase From Acinetobacter
Sp. Adp1 With Bound Catechol
pdb|1DLT|B Chain B, Structure Of Catechol 1,2-Dioxygenase From Acinetobacter
Sp. Adp1 With Bound Catechol
pdb|1DMH|A Chain A, Structure Of Catechol 1,2-Dioxygenase From Acinetobacter
Sp. Adp1 With Bound 4-Methylcatechol
pdb|1DMH|B Chain B, Structure Of Catechol 1,2-Dioxygenase From Acinetobacter
Sp. Adp1 With Bound 4-Methylcatechol
Length = 311
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 14/93 (15%)
Query: 64 NGQIYDITHRITSDMPSFGSKEGL---GQYLWLPKSIKNGSLANNSEMKLPSHTGTHVDA 120
N ++ I HR+ SD+ + + E L W + N L N E L S
Sbjct: 27 NPRVKQIIHRVLSDL--YKAIEDLNITSDEYWAGVAYLN-QLGANQEAGLLS-------- 75
Query: 121 PGHVFDHYFDAGYDVDTLDLGVLNGPALLVDVP 153
PG FDHY D D + LG+ N ++ P
Sbjct: 76 PGLGFDHYLDMRMDAEDAALGIENATPRTIEGP 108
>pdb|2ZXQ|A Chain A, Crystal Structure Of Endo-Alpha-N-Acetylgalactosaminidase
From Bifidobacterium Longum (Engbf)
Length = 1376
Score = 28.5 bits (62), Expect = 4.4, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 168 IPRGVRRVIFRTLNTDR-KLMFKREFDSSYVGFMKDGARWLVQNTDIKLVGIDYLSAAAH 226
+PRG V TL T + ++ K+ F S M DG Q+ D++ V I+ +
Sbjct: 15 VPRGSHMVASETLKTKKMEVQIKKNFPSVLQYTMTDGKVMYGQSKDVRTVEINGTNIELG 74
Query: 227 DD 228
DD
Sbjct: 75 DD 76
>pdb|1T3I|A Chain A, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE
Desulfurase From Synechocystis Pcc 6803
pdb|1T3I|B Chain B, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE
Desulfurase From Synechocystis Pcc 6803
Length = 420
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 212 DIKLVGIDYLSAAAHDDLLPSHYEFLEGREVIL 244
D++L+ D+L A+ H P+ FL G+E IL
Sbjct: 216 DVQLIDCDWLVASGHKMCAPTGIGFLYGKEEIL 248
>pdb|2B0A|A Chain A, Crystal Structure Of Protein Mj0783 From Methanococcus
Jannaschii
Length = 186
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 73/180 (40%), Gaps = 33/180 (18%)
Query: 106 SEMKLPSHTGTHVDAPGHVFDHYFDAGYDVDTLDLGVLNGPALLV---DVPRDKNITAEV 162
SE+ + SH TH+D P HV + G++ G + D P +K ++
Sbjct: 33 SEIIMGSHLCTHIDYPKHV------GLENRIPFKDGIIKGKGYCISLDDFPGNKLPACDI 86
Query: 163 MESLNIPRGVRRVIFRTLNTDRKLMFKREFDSSYVGFMKDGARWLVQNTDIKLVGIDYLS 222
L I G + R F++ + F+ D + ++IK VGID +
Sbjct: 87 ---LLIYTGFSKY------WGRDEYFEK---IPEIPFLDD-----IIKSNIKCVGIDACT 129
Query: 223 AAAHDDLLPSHYEFLEGREVILVEGLK--LDGVPAGLYNIHCLHLRLLGAEGSPIRCILI 280
++ ++ L ++++E L L + + L L++ + SPIRCI I
Sbjct: 130 IGGFEE-----HKRLLSNNILIIENLNENLKNLVGKSFYFLGLPLKIFDIDASPIRCIAI 184
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.141 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,580,032
Number of Sequences: 62578
Number of extensions: 327637
Number of successful extensions: 747
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 742
Number of HSP's gapped (non-prelim): 15
length of query: 281
length of database: 14,973,337
effective HSP length: 98
effective length of query: 183
effective length of database: 8,840,693
effective search space: 1617846819
effective search space used: 1617846819
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)