BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023542
         (281 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
           Finger) Domain Of Ring Finger Protein 126
          Length = 78

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 31/45 (68%)

Query: 209 CVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRL 253
           C +CKE+   G  V +LPC HLFH  CI+PWL++ ++CP CR  L
Sbjct: 18  CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 62


>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
           Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
           Northeast Structural Genomics Consortium (Nesg) Target
           Hr4710b
          Length = 91

 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 27/53 (50%)

Query: 202 GAGADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLP 254
             G + CC IC  E   G    ELPC H FH  C+  WL+K  TCP CR   P
Sbjct: 36  AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88


>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
          Length = 69

 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 24/45 (53%)

Query: 209 CVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRL 253
           C IC   +  G DV  LPC HLFH +C+  WL     CP CR  +
Sbjct: 17  CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61


>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
           38
          Length = 75

 Score = 39.3 bits (90), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 209 CVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCR 250
           CV+C  +    + +  LPC H FH  C+  WLK   TCP CR
Sbjct: 26  CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 67


>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
           Protein 24
          Length = 74

 Score = 38.5 bits (88), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 209 CVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRF 251
           C +C E+     ++   PCKH FH  C++ WL+ R  CP C  
Sbjct: 18  CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNM 60


>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
           Resonance Spectroscopy; A New Structural Class Of Zinc-
           Finger
          Length = 68

 Score = 36.6 bits (83), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 209 CVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPTDDVFGEIE 263
           C IC E+         LPC H F ++CI  W+++  TCP C  ++P + V   IE
Sbjct: 8   CPICLEDPSNYSMA--LPCLHAFCYVCITRWIRQNPTCPLC--KVPVESVVHTIE 58


>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
          Length = 55

 Score = 36.2 bits (82), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 209 CVICKEEMGGGRDVCELP-CKHLFHWLCILPWLKKRNTCPCCRFRL 253
           C +C  E+  G +   LP C H FH  C+  WL   +TCP CR  +
Sbjct: 8   CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53


>pdb|2XEU|A Chain A, Ring Domain
          Length = 64

 Score = 35.0 bits (79), Expect = 0.052,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 204 GADQCCVIC----KEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRL 253
           GA   C IC     E +  GR +    C H+F   C+   LK  NTCP CR ++
Sbjct: 1   GAMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54


>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
 pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
          Length = 71

 Score = 33.5 bits (75), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 209 CVIC----KEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRL 253
           C IC     E +  GR +    C H+F   C+   LK  NTCP CR ++
Sbjct: 13  CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61


>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
           Ligase Complex
 pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
           Ligase Complex
          Length = 90

 Score = 33.5 bits (75), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 13/21 (61%)

Query: 227 CKHLFHWLCILPWLKKRNTCP 247
           C H FH+ CI  WLK R  CP
Sbjct: 57  CNHAFHFHCISRWLKTRQVCP 77


>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
          Length = 138

 Score = 33.1 bits (74), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 209 CVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCR 250
           C+IC E      +   L C H F   CI  W+K++  CP CR
Sbjct: 56  CIICSEYFI---EAVTLNCAHSFCSYCINEWMKRKIECPICR 94


>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
           Finger Protein 146
          Length = 71

 Score = 33.1 bits (74), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 4/35 (11%)

Query: 224 ELPCKHLFHWLCI--LPWLKKRNTCPCCRFRLPTD 256
            LPCKH+F +LC+    WL KR  C  CR  +P D
Sbjct: 30  SLPCKHVFCYLCVKGASWLGKR--CALCRQEIPED 62


>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
           HETERODIMER
 pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
           HETERODIMER
 pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
           HETERODIMER
 pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
           HETERODIMER
 pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
           HETERODIMER
          Length = 149

 Score = 32.7 bits (73), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 209 CVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCR 250
           C+IC E      +   L C H F   CI  W+K++  CP CR
Sbjct: 67  CIICSEYFI---EAVTLNCAHSFCSYCINEWMKRKIECPICR 105


>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
          Length = 138

 Score = 32.7 bits (73), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 209 CVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCR 250
           C+IC E      +   L C H F   CI  W+K++  CP CR
Sbjct: 56  CIICSEYFI---EAVTLNCAHSFCSYCINEWMKRKIECPICR 94


>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
           Finger Protein 141
          Length = 70

 Score = 32.3 bits (72), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 209 CVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRL 253
           C IC +    GR    LPC H F   CI  W  +   CP CR ++
Sbjct: 18  CCICMD----GRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQM 58


>pdb|2LGV|A Chain A, Rbx1
          Length = 100

 Score = 31.6 bits (70), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 12/21 (57%), Positives = 13/21 (61%)

Query: 227 CKHLFHWLCILPWLKKRNTCP 247
           C H FH+ CI  WLK R  CP
Sbjct: 67  CNHAFHFHCISRWLKTRQVCP 87


>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
           Site Containing Dna-Duplex
          Length = 117

 Score = 31.6 bits (70), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 12/21 (57%), Positives = 13/21 (61%)

Query: 227 CKHLFHWLCILPWLKKRNTCP 247
           C H FH+ CI  WLK R  CP
Sbjct: 84  CNHAFHFHCISRWLKTRQVCP 104


>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
 pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
          Length = 108

 Score = 31.6 bits (70), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 12/21 (57%), Positives = 13/21 (61%)

Query: 227 CKHLFHWLCILPWLKKRNTCP 247
           C H FH+ CI  WLK R  CP
Sbjct: 75  CNHAFHFHCISRWLKTRQVCP 95


>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
           And Chy Zinc Finger Domain-Containing Protein 1 From Mus
           Musculus
          Length = 55

 Score = 31.6 bits (70), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 202 GAGADQCCVICKEEMGGGRDVCE-LPCKHLFHWLCILPWLKKRNTCPCC 249
           G+     C IC E++   R V   LPC HL H  C    LK+   CP C
Sbjct: 1   GSSGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49


>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
           Ring-Box Protein 2
          Length = 81

 Score = 31.6 bits (70), Expect = 0.52,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 227 CKHLFHWLCILPWLKKRNTCPCCR 250
           C H FH  C+  W+K+ N CP C+
Sbjct: 48  CNHSFHNCCMSLWVKQNNRCPLCQ 71


>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
           Ligases: Conformational Control Of Conjugation.
 pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
           Protein Transfer: Structural Insights Into Cullin-Ring
           Ligases
 pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
           Protein Transfer: Structural Insights Into Cullin-Ring
           Ligases
 pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
           Protein Transfer: Structural Insights Into Cullin-Ring
           Ligases
 pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
           Protein Transfer: Structural Insights Into Cullin-Ring
           Ligases
 pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
 pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
          Length = 106

 Score = 31.6 bits (70), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 12/21 (57%), Positives = 13/21 (61%)

Query: 227 CKHLFHWLCILPWLKKRNTCP 247
           C H FH+ CI  WLK R  CP
Sbjct: 73  CNHAFHFHCISRWLKTRQVCP 93


>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
           Finger Protein 4
          Length = 69

 Score = 31.6 bits (70), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 214 EEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRL 253
           E +  GR +    C H+F   C+   LK  NTCP CR ++
Sbjct: 27  EIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66


>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
           Ligases: Conformational Control Of Conjugation
 pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
           Ligases: Conformational Control Of Conjugation
          Length = 106

 Score = 31.6 bits (70), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 12/21 (57%), Positives = 13/21 (61%)

Query: 227 CKHLFHWLCILPWLKKRNTCP 247
           C H FH+ CI  WLK R  CP
Sbjct: 73  CNHAFHFHCISRWLKTRQVCP 93


>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
          Length = 133

 Score = 31.2 bits (69), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 214 EEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRL 253
           E +  GR +    C H+F   C+   LK  NTCP CR ++
Sbjct: 19  EIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58



 Score = 31.2 bits (69), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 214 EEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRL 253
           E +  GR +    C H+F   C+   LK  NTCP CR ++
Sbjct: 84  EIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123


>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
 pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
 pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
           Site Containing Dna-Duplex
 pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
           Site Containing Dna-Duplex
          Length = 98

 Score = 31.2 bits (69), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 12/21 (57%), Positives = 13/21 (61%)

Query: 227 CKHLFHWLCILPWLKKRNTCP 247
           C H FH+ CI  WLK R  CP
Sbjct: 65  CNHAFHFHCISRWLKTRQVCP 85


>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
           Northeast Structural Genomics Consortium Target Ht2b
          Length = 52

 Score = 31.2 bits (69), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 205 ADQCCVICKEEMGGGRDVCE-LPCKHLFHWLCILPWLKKRNTCPCC 249
           + Q C IC E++   R V   LPC HL H  C    LK+   CP C
Sbjct: 4   SQQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49


>pdb|1RMD|A Chain A, Rag1 Dimerization Domain
          Length = 116

 Score = 30.8 bits (68), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 5/50 (10%)

Query: 209 CVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNT-CPCCRFR-LPTD 256
           C IC+  +    D  E  CKHLF  +CIL  LK   + CP CR+   PTD
Sbjct: 26  CQICEHILA---DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72


>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
          Length = 391

 Score = 28.1 bits (61), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 207 QCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNT-CPCCR 250
           Q C IC E     +DV   PC HL    C+  W +     CP CR
Sbjct: 335 QLCKICAE---NDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 376


>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
           Complex
          Length = 391

 Score = 28.1 bits (61), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 207 QCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNT-CPCCR 250
           Q C IC E     +DV   PC HL    C+  W +     CP CR
Sbjct: 335 QLCKICAE---NDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 376


>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
 pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
 pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
 pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
 pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
 pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
 pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
 pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
          Length = 389

 Score = 28.1 bits (61), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 207 QCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNT-CPCCR 250
           Q C IC E     +DV   PC HL    C+  W +     CP CR
Sbjct: 333 QLCKICAE---NDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 374


>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
           Ubiquitin-Protein Ligases
          Length = 388

 Score = 28.1 bits (61), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 207 QCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNT-CPCCR 250
           Q C IC E     +DV   PC HL    C+  W +     CP CR
Sbjct: 333 QLCKICAE---NDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 374


>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
 pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
 pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
          Length = 394

 Score = 27.7 bits (60), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 207 QCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNT-CPCCR 250
           Q C IC E     +DV   PC HL    C+  W +     CP CR
Sbjct: 339 QLCKICAE---NDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCR 380


>pdb|2REU|A Chain A, Crystal Structure Of The C-Terminal Of Sau3ai Fragment
          Length = 258

 Score = 27.3 bits (59), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 251 FRLPTDDVFGEIERLWDALVKTSGGG 276
           F +P +D+ G ++R+WD  VK    G
Sbjct: 143 FSMPEEDINGPVKRMWDDTVKKLKEG 168


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.451 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,200,869
Number of Sequences: 62578
Number of extensions: 239944
Number of successful extensions: 443
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 416
Number of HSP's gapped (non-prelim): 48
length of query: 281
length of database: 14,973,337
effective HSP length: 98
effective length of query: 183
effective length of database: 8,840,693
effective search space: 1617846819
effective search space used: 1617846819
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)