BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023542
(281 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana
GN=At3g19950 PE=2 SV=1
Length = 328
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 36/49 (73%)
Query: 209 CVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPTDD 257
C +C +E G DV ++PCKH+FH C+LPWL+ N+CP CRF LPTDD
Sbjct: 216 CAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFELPTDD 264
>sp|Q9CY62|RN181_MOUSE E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2
SV=1
Length = 165
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 189 AAVAAVVRLPS--VDGAGADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTC 246
AA A V LP + A AD C +C E V E+PC HLFH CILPWL K N+C
Sbjct: 66 AAKAVVESLPRTVISSAKADLKCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLSKTNSC 125
Query: 247 PCCRFRLPTDD 257
P CR LPTDD
Sbjct: 126 PLCRHELPTDD 136
>sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1
PE=2 SV=1
Length = 338
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 7/96 (7%)
Query: 189 AAVAAVVRLPSVDGAGAD-----QCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKR 243
A+ +A+ LP V+ ++ C +C ++ G + ++PCKHL+H C+LPWL+
Sbjct: 199 ASKSAIEALPLVNITKSNLNSEFNQCAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELH 258
Query: 244 NTCPCCRFRLPTDDVFGEIERLWDALVKTSGGGSFD 279
N+CP CR LPTDD + ER TSGG D
Sbjct: 259 NSCPVCRHELPTDDP--DYERRVRGAQGTSGGNDGD 292
>sp|Q8RXD3|AIP2_ARATH E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana GN=AIP2
PE=1 SV=1
Length = 310
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 36/54 (66%)
Query: 204 GADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPTDD 257
GA+ C ICKE + G + ELPCKH FH C+ PWL + N+CP CR LPTDD
Sbjct: 225 GAEAECCICKENLVIGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELPTDD 278
>sp|Q9VE61|RN181_DROME E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila
melanogaster GN=CG7694 PE=2 SV=1
Length = 147
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 189 AAVAAVVRLPSVD----GAGADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRN 244
A+ A++ LP + G D C +CKE G+ LPCKH FH CIL WLKK N
Sbjct: 46 ASKRAILELPVHEIVKSDEGGDLECSVCKEPAEEGQKYRILPCKHEFHEECILLWLKKTN 105
Query: 245 TCPCCRFRLPTDD-VFGEIERL 265
+CP CR+ L TDD V+ E+ R
Sbjct: 106 SCPLCRYELETDDPVYEELRRF 127
>sp|Q9P0P0|RN181_HUMAN E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens GN=RNF181 PE=1
SV=1
Length = 153
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 189 AAVAAVVRLPS--VDGAGADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTC 246
AA V LP + G+ A+ C +C E E+PC HLFH CILPWL K N+C
Sbjct: 54 AAKTVVENLPRTVIRGSQAELKCPVCLLEFEEEETAIEMPCHHLFHSSCILPWLSKTNSC 113
Query: 247 PCCRFRLPTDDVFGEIER 264
P CR+ LPTDD E R
Sbjct: 114 PLCRYELPTDDDTYEEHR 131
>sp|Q7ZW78|RN181_DANRE E3 ubiquitin-protein ligase RNF181 OS=Danio rerio GN=rnf181 PE=2
SV=2
Length = 156
Score = 67.8 bits (164), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 189 AAVAAVVRLPSV----DGAGADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRN 244
AA A V LP V + A C +C E V E+PCKHLFH CILPWL K N
Sbjct: 55 AAKAVVQSLPVVIISPEQADKGVKCPVCLLEFEEQESVREMPCKHLFHTGCILPWLNKTN 114
Query: 245 TCPCCRFRLPTDDVFGE 261
+CP CR LPTD+ E
Sbjct: 115 SCPLCRLELPTDNADYE 131
>sp|Q9SPL2|CIP8_ARATH E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8
PE=1 SV=1
Length = 334
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 36/56 (64%)
Query: 209 CVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPTDDVFGEIER 264
C +CK+ M G +LPC H +H CI+PWL RN+CP CRF+L TDD E ER
Sbjct: 257 CAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCRFQLETDDAEYEEER 312
>sp|Q3T0W3|RN181_BOVIN E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2
SV=1
Length = 153
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 189 AAVAAVVRLPS--VDGAGADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTC 246
AA AV LP + G+ A+ C +C E E+PC HLFH CILPWL K N+C
Sbjct: 54 AAKTAVENLPRTVIRGSQAELKCPVCLLEFEEEETAIEMPCHHLFHSNCILPWLSKTNSC 113
Query: 247 PCCRFRLPT-DDVFGEIER 264
P CR LPT DD + E +R
Sbjct: 114 PLCRHELPTDDDTYEEHKR 132
>sp|Q6GPV5|RN181_XENLA E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis GN=rnf181 PE=2
SV=1
Length = 156
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 175 GGVRGGEKEGRDVAAAVAAVVR-LPSV----DGAGADQCCVICKEEMGGGRDVCELPCKH 229
G V E + R A VV LP V + A A C +C E G V +LPC+H
Sbjct: 40 GAVDFTEWDQRLPPPASKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEH 99
Query: 230 LFHWLCILPWLKKRNTCPCCRFRLPTD 256
LFH CILPWL K N+CP CR LPTD
Sbjct: 100 LFHSACILPWLGKTNSCPLCRHELPTD 126
>sp|Q5M974|RN181_XENTR E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis GN=rnf181
PE=2 SV=1
Length = 156
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 189 AAVAAVVRLPSV----DGAGADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRN 244
AA V LP V + A A C +C E G V +LPC+HLFH CILPWL K N
Sbjct: 55 AAKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSSCILPWLGKTN 114
Query: 245 TCPCCRFRLPTD 256
+CP CR LPTD
Sbjct: 115 SCPLCRHELPTD 126
>sp|Q6AXU4|RN181_RAT E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus GN=Rnf181
PE=1 SV=1
Length = 165
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 189 AAVAAVVRLPS--VDGAGADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTC 246
AA A V LP + + A+ C +C E V E+PC HLFH CILPWL K N+C
Sbjct: 66 AAKAVVESLPRTVIRSSKAELKCPVCLLEFEEEETVIEMPCHHLFHSNCILPWLSKTNSC 125
Query: 247 PCCRFRLPTDD 257
P CR LPTDD
Sbjct: 126 PLCRHELPTDD 136
>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1
Length = 312
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 31/45 (68%)
Query: 209 CVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRL 253
C +CKE+ G V +LPC HLFH CI+PWL++ +TCP CR L
Sbjct: 228 CPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272
>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1
Length = 311
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 31/45 (68%)
Query: 209 CVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRL 253
C +CKE+ G V +LPC HLFH CI+PWL++ +TCP CR L
Sbjct: 227 CPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 271
>sp|A8WWR3|HRDL1_CAEBR E3 ubiquitin-protein ligase hrd-like protein 1 OS=Caenorhabditis
briggsae GN=hrdl-1 PE=3 SV=1
Length = 578
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 198 PSVDGAGADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPT 255
PSV A +D C++C E +G R LPC H FH C++ WL + ++CP CR+ +P+
Sbjct: 339 PSVKAANSDDRCIVCWELLGTSR---RLPCSHQFHDWCLMWWLAQDSSCPTCRYVIPS 393
>sp|Q0II22|RN126_BOVIN RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1
Length = 313
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 32/45 (71%)
Query: 209 CVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRL 253
C +CK++ G G V +LPC HLFH CI+PWL++ ++CP CR L
Sbjct: 232 CPVCKDDYGLGEHVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 276
>sp|Q91YL2|RN126_MOUSE RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1
Length = 313
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 31/45 (68%)
Query: 209 CVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRL 253
C +CKE+ G V +LPC HLFH CI+PWL++ ++CP CR L
Sbjct: 231 CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 275
>sp|Q20798|HRD1_CAEEL E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis elegans
GN=sel-11 PE=3 SV=1
Length = 610
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%)
Query: 201 DGAGADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCR 250
D A D C+IC+EEM LPC H+FH C+ W +++ TCP CR
Sbjct: 284 DLAAMDATCIICREEMTVDASPKRLPCSHVFHAHCLRSWFQRQQTCPTCR 333
>sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1
Length = 312
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 31/45 (68%)
Query: 209 CVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRL 253
C +CKE+ G V +LPC HLFH CI+PWL++ +TCP CR L
Sbjct: 228 CPVCKEDYTVGECVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272
>sp|Q803I8|SYVN1_DANRE E3 ubiquitin-protein ligase synoviolin OS=Danio rerio GN=syvn1 PE=2
SV=2
Length = 625
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 201 DGAGADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCR 250
D D C+IC+EEM G +LPC H+FH C+ W +++ TCP CR
Sbjct: 283 DLQATDNVCIICREEMVTGAK--KLPCNHIFHSSCLRSWFQRQQTCPTCR 330
>sp|Q5XHH7|SYVNB_XENLA E3 ubiquitin-protein ligase synoviolin B OS=Xenopus laevis
GN=syvn1-b PE=2 SV=1
Length = 595
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 206 DQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCR 250
D C+IC+EEM G LPC H+FH C+ W +++ TCP CR
Sbjct: 282 DNVCIICREEMVSGAK--RLPCNHIFHTSCLRSWFQRQQTCPTCR 324
>sp|Q80U04|PJA2_MOUSE E3 ubiquitin-protein ligase Praja-2 OS=Mus musculus GN=Pja2 PE=1
SV=2
Length = 707
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 27/51 (52%)
Query: 204 GADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLP 254
G +QCC IC E ELPC H FH C+ WL+K TCP CR P
Sbjct: 628 GQEQCCPICCSEYIKDDIATELPCHHFFHKPCVSIWLQKSGTCPVCRRHFP 678
>sp|O43164|PJA2_HUMAN E3 ubiquitin-protein ligase Praja-2 OS=Homo sapiens GN=PJA2 PE=1
SV=4
Length = 708
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 27/51 (52%)
Query: 204 GADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLP 254
G +QCC IC E ELPC H FH C+ WL+K TCP CR P
Sbjct: 629 GQEQCCPICCSEYIKDDIATELPCHHFFHKPCVSIWLQKSGTCPVCRRHFP 679
>sp|Q86TM6|SYVN1_HUMAN E3 ubiquitin-protein ligase synoviolin OS=Homo sapiens GN=SYVN1
PE=1 SV=2
Length = 617
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 206 DQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCR 250
D C+IC+EEM G LPC H+FH C+ W +++ TCP CR
Sbjct: 288 DNVCIICREEMVTGAK--RLPCNHIFHTSCLRSWFQRQQTCPTCR 330
>sp|Q9DBY1|SYVN1_MOUSE E3 ubiquitin-protein ligase synoviolin OS=Mus musculus GN=Syvn1
PE=1 SV=3
Length = 612
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 204 GADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCR 250
D C+IC+EEM G LPC H+FH C+ W +++ TCP CR
Sbjct: 286 AVDNVCIICREEMVTGAK--RLPCNHIFHTSCLRSWFQRQQTCPTCR 330
>sp|Q5R4R1|PJA2_PONAB E3 ubiquitin-protein ligase Praja-2 OS=Pongo abelii GN=PJA2 PE=2
SV=1
Length = 708
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 27/51 (52%)
Query: 204 GADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLP 254
G +QCC IC E ELPC H FH C+ WL+K TCP CR P
Sbjct: 629 GQEQCCPICCSEYIKDDIATELPCHHFFHKPCVSIWLQKSGTCPVCRRHFP 679
>sp|Q9BV68|RN126_HUMAN RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1
Length = 326
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 31/45 (68%)
Query: 209 CVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRL 253
C +CK++ G V +LPC HLFH CI+PWL++ ++CP CR L
Sbjct: 229 CPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 273
>sp|Q6NRL6|SYVNA_XENLA E3 ubiquitin-protein ligase synoviolin A OS=Xenopus laevis
GN=syvn1-a PE=2 SV=1
Length = 605
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 206 DQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCR 250
D C+IC+EEM G LPC H+FH C+ W +++ TCP CR
Sbjct: 282 DNVCIICREEMVTGAK--RLPCNHIFHTSCLRSWFQRQQTCPTCR 324
>sp|Q63364|PJA2_RAT E3 ubiquitin-protein ligase Praja-2 OS=Rattus norvegicus GN=Pja2
PE=2 SV=1
Length = 707
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 27/51 (52%)
Query: 204 GADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLP 254
G +QCC IC E ELPC H FH C+ WL+K TCP CR P
Sbjct: 628 GQEQCCPICCSEYIKDDIATELPCHHFFHKPCVSIWLQKSGTCPVCRRHFP 678
>sp|A8Y4B2|HRD1_CAEBR E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis briggsae
GN=sel-11 PE=3 SV=2
Length = 622
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 176 GVRGGEKEGRDVAAAVAAV----VRLPSVDG---AGADQCCVICKEEMGGGRDVCELPCK 228
VR K DV + A+ + P V + D C+IC+EEM LPC
Sbjct: 252 SVRALHKAFLDVILSRRAINAMNSQFPVVSNDELSAMDATCIICREEMTVESSPKRLPCS 311
Query: 229 HLFHWLCILPWLKKRNTCPCCR 250
H+FH C+ W +++ TCP CR
Sbjct: 312 HVFHAHCLRSWFQRQQTCPTCR 333
>sp|Q9Y4L5|RN115_HUMAN E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1
SV=2
Length = 304
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 209 CVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPTDD 257
C +CKE+ +V +LPC H FH CI+PWL+ +TCP CR L +D
Sbjct: 228 CPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGED 276
>sp|Q9M2S6|SDIR1_ARATH E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1
PE=1 SV=1
Length = 273
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 32/54 (59%)
Query: 199 SVDGAGADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFR 252
S G + C +C E++ G V LPC H FH CI PWL+++ TCP C+FR
Sbjct: 201 SKKGTEDELTCSVCLEQVTVGEIVRTLPCLHQFHAGCIDPWLRQQGTCPVCKFR 254
>sp|P90859|HRDL1_CAEEL E3 ubiquitin-protein ligase hrd-like protein 1 OS=Caenorhabditis
elegans GN=hrdl-1 PE=1 SV=2
Length = 564
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 198 PSVDGAGADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPT-D 256
PSV A D CV+C E +G R LPC H FH C++ WL + ++CP CR +P+
Sbjct: 324 PSVKCANGDDRCVVCWELLGTSR---RLPCSHQFHDWCLMWWLAQDSSCPTCRCTIPSPQ 380
Query: 257 DVFGEIERLWDALVKTSGGGSF 278
D + + ++ GGSF
Sbjct: 381 DQIRQPPEVGNSTRLRFNGGSF 402
>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1
Length = 346
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 48/119 (40%), Gaps = 18/119 (15%)
Query: 137 ESALSLSGIVGGAYEGAVLLPYVEMVTRCRRFVNAMGGGGVRGGEKEGRDVAAAVAAVVR 196
E L L +G GAV +E T ++ G +G + EG +
Sbjct: 240 EELLQLEDRLGNVTRGAVQN-TIERFTFPHKYKKRRPQDG-KGKKDEGEE---------- 287
Query: 197 LPSVDGAGADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPT 255
+ D+ C IC + G DV LPC HLFH LC+ WL CP CR + T
Sbjct: 288 ------SDTDEKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDIET 340
>sp|O55176|PJA1_MOUSE E3 ubiquitin-protein ligase Praja-1 OS=Mus musculus GN=Pja1 PE=1
SV=3
Length = 578
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 27/51 (52%)
Query: 204 GADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLP 254
G + CC IC E G ELPC H FH C+ WL+K TCP CR P
Sbjct: 525 GQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 575
>sp|Q95SP2|HRD1_DROME E3 ubiquitin-protein ligase HRD1 OS=Drosophila melanogaster GN=sip3
PE=1 SV=1
Length = 626
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
Query: 205 ADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCR---FRLPT 255
+D C+IC+E+M +LPC H+FH C+ W +++ TCP CR R PT
Sbjct: 285 SDNICIICREDMVNHSK--KLPCGHIFHTTCLRSWFQRQQTCPTCRLNILRTPT 336
>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1
SV=1
Length = 305
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 209 CVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPTDD 257
C +CKE+ V +LPC H FH CI+PWL+ +TCP CR L +D
Sbjct: 229 CPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGED 277
>sp|Q06003|GOLI_DROME Protein goliath OS=Drosophila melanogaster GN=gol PE=2 SV=3
Length = 461
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 177 VRGGEKEGRDVAAAVA-AVVRLPSVDGAGADQ------CCVICKEEMGGGRDVCELPCKH 229
++ +++ R++ + A++++P+ G +D+ CC IC E + LPCKH
Sbjct: 264 MQAKDQQSRNLCSVTKKAIMKIPTKTGKFSDEKDLDSDCCAICIEAYKPTDTIRILPCKH 323
Query: 230 LFHWLCILPWLKKRNTCPCCR 250
FH CI PWL + TCP C+
Sbjct: 324 EFHKNCIDPWLIEHRTCPMCK 344
>sp|Q8NG27|PJA1_HUMAN E3 ubiquitin-protein ligase Praja-1 OS=Homo sapiens GN=PJA1 PE=1
SV=2
Length = 643
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 27/51 (52%)
Query: 204 GADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLP 254
G + CC IC E G ELPC H FH C+ WL+K TCP CR P
Sbjct: 590 GQEMCCPICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 640
>sp|Q7TMV1|RN139_MOUSE E3 ubiquitin-protein ligase RNF139 OS=Mus musculus GN=Rnf139 PE=1
SV=1
Length = 668
Score = 54.3 bits (129), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 177 VRGGEKEGRDVAAAVAAVVRLPSVDGA---GADQCCVICKEEMGGGRDVCELPCKHLFHW 233
V+ G K + AV + LP + G+ D C IC E + PC H FH
Sbjct: 512 VKNGWKTFMNRRTAVKKINSLPEIKGSHLQEIDDVCAICYHEFTTSARIT--PCNHYFHA 569
Query: 234 LCILPWLKKRNTCPCCRFRLPTDD 257
LC+ WL ++TCP C ++ +D
Sbjct: 570 LCLRKWLYIQDTCPMCHQKVYIED 593
>sp|Q9C1X4|YKW3_SCHPO Uncharacterized RING finger protein P32A8.03c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAP32A8.03c PE=4 SV=1
Length = 513
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 24/42 (57%)
Query: 209 CVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCR 250
C IC E DV +LPCKH FH CI PWL+ TC CR
Sbjct: 396 CTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICR 437
>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1
Length = 347
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%)
Query: 201 DGAGADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPT 255
+ + D+ C IC + G DV LPC HLFH LC+ WL CP CR + T
Sbjct: 287 EESDTDEKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDIET 341
>sp|Q6Y290|GOLI_RAT E3 ubiquitin-protein ligase RNF130 OS=Rattus norvegicus GN=Rnf130
PE=1 SV=1
Length = 419
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 63/147 (42%), Gaps = 17/147 (11%)
Query: 133 KHFCESAL---SLSGIVGGAYEGAVLLPYVEMVTRCRRFVNAMGGGGVRGGEKEGRDVAA 189
K+F +L S+S IV A L+ Y + R+ NA R G+ + ++
Sbjct: 188 KNFSRGSLVFVSISFIVLMIISSAWLIFYF---IQKIRYTNARDRNQRRLGDAAKKAISK 244
Query: 190 AVAAVVRLPSVDGAGADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCC 249
V+ + C +C E V LPCKH+FH C+ PWL + TCP C
Sbjct: 245 LTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRVLPCKHVFHKSCVDPWLSEHCTCPMC 304
Query: 250 RF----------RLP-TDDVFGEIERL 265
+ LP TD+V ++ERL
Sbjct: 305 KLNILKALGIVPNLPCTDNVAFDMERL 331
>sp|P30631|YOUD_CAEEL Uncharacterized RING finger protein ZK637.14 OS=Caenorhabditis
elegans GN=ZK637.14 PE=4 SV=2
Length = 161
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 21/87 (24%)
Query: 199 SVDGAGADQCCVICKEEMGGGRDVCE---------------------LPCKHLFHWLCIL 237
+ D D C IC + + D+ E +PCKH FH+ C+
Sbjct: 62 TTDQQKEDATCAICLDNLQNNVDIPEDHVIKEELKIDPTTFGTTVIVMPCKHRFHYFCLT 121
Query: 238 PWLKKRNTCPCCRFRLPTDDVFGEIER 264
WL+ + TCP CR ++ TD E ER
Sbjct: 122 LWLEAQQTCPTCRQKVKTDKEVEEEER 148
>sp|Q7TPV2|DZIP3_MOUSE E3 ubiquitin-protein ligase DZIP3 OS=Mus musculus GN=Dzip3 PE=2 SV=2
Length = 1204
Score = 53.5 bits (127), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 209 CVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPTDDVF 259
CVIC E + ++ LPC H FH CI PWL ++ TCP CR + + F
Sbjct: 1144 CVICHENLSP-ENLSVLPCAHKFHSQCIRPWLMQQGTCPTCRLHVLQPEEF 1193
>sp|Q9LT17|BBR_ARATH E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana
GN=BBR PE=2 SV=1
Length = 340
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 204 GADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPT 255
G ++ CVIC+ + D+ LPCKH +H CI WLK CP C + T
Sbjct: 283 GTNESCVICRLDYEDDEDLILLPCKHSYHSECINNWLKINKVCPVCSAEVST 334
>sp|Q86Y13|DZIP3_HUMAN E3 ubiquitin-protein ligase DZIP3 OS=Homo sapiens GN=DZIP3 PE=1 SV=2
Length = 1208
Score = 53.5 bits (127), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 209 CVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRL 253
CVIC E + ++ LPC H FH CI PWL ++ TCP CR +
Sbjct: 1148 CVICHENLSP-ENLSVLPCAHKFHAQCIRPWLMQQGTCPTCRLHV 1191
>sp|Q8VEM1|GOLI_MOUSE E3 ubiquitin-protein ligase RNF130 OS=Mus musculus GN=Rnf130 PE=2
SV=1
Length = 419
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 63/147 (42%), Gaps = 17/147 (11%)
Query: 133 KHFCESAL---SLSGIVGGAYEGAVLLPYVEMVTRCRRFVNAMGGGGVRGGEKEGRDVAA 189
K+F +L S+S IV A L+ Y + R+ NA R G+ + ++
Sbjct: 188 KNFSRGSLVFVSISFIVLMIISSAWLIFYF---IQKIRYTNARDRNQRRLGDAAKKAISK 244
Query: 190 AVAAVVRLPSVDGAGADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCC 249
V+ + C +C E V LPCKH+FH C+ PWL + TCP C
Sbjct: 245 LTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRVLPCKHVFHKSCVDPWLSEHCTCPMC 304
Query: 250 RF----------RLP-TDDVFGEIERL 265
+ LP TD+V ++ERL
Sbjct: 305 KLNILKALGIVPNLPCTDNVAFDMERL 331
>sp|Q86XS8|GOLI_HUMAN E3 ubiquitin-protein ligase RNF130 OS=Homo sapiens GN=RNF130 PE=1
SV=1
Length = 419
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 70/165 (42%), Gaps = 19/165 (11%)
Query: 133 KHFCESAL---SLSGIVGGAYEGAVLLPYVEMVTRCRRFVNAMGGGGVRGGEKEGRDVAA 189
K+F +L S+S IV A L+ Y + R+ NA R G+ + ++
Sbjct: 188 KNFSRGSLVFVSISFIVLMIISSAWLIFYF---IQKIRYTNARDRNQRRLGDAAKKAISK 244
Query: 190 AVAAVVRLPSVDGAGADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCC 249
V+ + C +C E V LPCKH+FH C+ PWL + TCP C
Sbjct: 245 LTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRILPCKHVFHKSCVDPWLSEHCTCPMC 304
Query: 250 RF----------RLP-TDDVFGEIERL--WDALVKTSGGGSFDGE 281
+ LP TD+V ++ERL A+ + S G G+
Sbjct: 305 KLNILKALGIVPNLPCTDNVAFDMERLTRTQAVNRRSALGDLAGD 349
>sp|Q8WU17|RN139_HUMAN E3 ubiquitin-protein ligase RNF139 OS=Homo sapiens GN=RNF139 PE=1
SV=1
Length = 664
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 178 RGGEKEGRDVAAAVAAVVRLPSVDGA---GADQCCVICKEEMGGGRDVCELPCKHLFHWL 234
+ G K + AV + LP + G+ + C IC E + PC H FH L
Sbjct: 513 KNGWKTFMNRRTAVKKINSLPEIKGSRLQEINDVCAICYHEFTTSARIT--PCNHYFHAL 570
Query: 235 CILPWLKKRNTCPCCRFRLPTDD 257
C+ WL ++TCP C ++ +D
Sbjct: 571 CLRKWLYIQDTCPMCHQKVYIED 593
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.139 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,983,015
Number of Sequences: 539616
Number of extensions: 4748074
Number of successful extensions: 10571
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 118
Number of HSP's that attempted gapping in prelim test: 10188
Number of HSP's gapped (non-prelim): 486
length of query: 281
length of database: 191,569,459
effective HSP length: 116
effective length of query: 165
effective length of database: 128,974,003
effective search space: 21280710495
effective search space used: 21280710495
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)