Query 023542
Match_columns 281
No_of_seqs 181 out of 1613
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 08:36:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023542.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023542hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 3.1E-17 1.1E-21 126.6 7.0 75 181-255 9-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 1.6E-16 5.3E-21 117.8 1.7 62 195-256 7-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.5 3.7E-15 1.3E-19 103.6 4.1 51 204-254 3-54 (55)
4 2kiz_A E3 ubiquitin-protein li 99.5 1.2E-14 3.9E-19 105.7 5.3 54 204-257 12-65 (69)
5 2ect_A Ring finger protein 126 99.5 9.7E-15 3.3E-19 108.5 4.7 56 204-259 13-68 (78)
6 2ep4_A Ring finger protein 24; 99.5 1.4E-14 4.8E-19 106.6 5.5 54 204-257 13-66 (74)
7 2ecl_A Ring-box protein 2; RNF 99.5 2.9E-14 9.8E-19 107.9 5.1 59 198-256 7-77 (81)
8 1v87_A Deltex protein 2; ring- 99.5 4.7E-14 1.6E-18 112.0 5.5 66 191-256 10-95 (114)
9 2ecm_A Ring finger and CHY zin 99.4 6.6E-14 2.2E-18 97.1 4.7 51 204-254 3-54 (55)
10 3ng2_A RNF4, snurf, ring finge 99.4 5.1E-14 1.7E-18 102.3 3.5 55 204-258 8-66 (71)
11 2xeu_A Ring finger protein 4; 99.4 6.1E-14 2.1E-18 99.6 3.3 54 205-258 2-59 (64)
12 2ea6_A Ring finger protein 4; 99.4 1.5E-13 5.2E-18 98.9 4.2 52 204-255 13-68 (69)
13 3dpl_R Ring-box protein 1; ubi 99.4 3.6E-13 1.2E-17 107.6 5.0 52 203-254 34-100 (106)
14 4a0k_B E3 ubiquitin-protein li 99.3 2E-14 6.7E-19 117.1 -4.3 52 203-254 45-111 (117)
15 2ecn_A Ring finger protein 141 99.3 3.2E-13 1.1E-17 98.3 2.3 51 204-258 13-63 (70)
16 2djb_A Polycomb group ring fin 99.3 1.1E-12 3.9E-17 96.2 5.3 54 204-259 13-66 (72)
17 1chc_A Equine herpes virus-1 r 99.3 8E-13 2.7E-17 95.5 4.2 50 204-255 3-52 (68)
18 2ecy_A TNF receptor-associated 99.3 1E-12 3.5E-17 94.8 4.8 52 204-258 13-65 (66)
19 4ayc_A E3 ubiquitin-protein li 99.3 6.3E-13 2.2E-17 109.6 3.7 51 206-259 53-103 (138)
20 2csy_A Zinc finger protein 183 99.3 1E-12 3.5E-17 98.5 4.3 63 204-271 13-75 (81)
21 2ct2_A Tripartite motif protei 99.3 1.6E-12 5.4E-17 98.0 5.3 54 204-257 13-70 (88)
22 2d8t_A Dactylidin, ring finger 99.3 6.3E-13 2.1E-17 97.4 2.8 49 204-255 13-61 (71)
23 3fl2_A E3 ubiquitin-protein li 99.3 1.7E-12 5.8E-17 104.8 4.5 68 206-276 52-120 (124)
24 3ztg_A E3 ubiquitin-protein li 99.3 2.8E-12 9.5E-17 98.0 5.3 55 204-261 11-68 (92)
25 2ysl_A Tripartite motif-contai 99.3 2.2E-12 7.6E-17 94.2 4.5 52 204-258 18-72 (73)
26 1t1h_A Gspef-atpub14, armadill 99.3 2.9E-12 1E-16 95.0 5.0 52 204-258 6-58 (78)
27 2d8s_A Cellular modulator of i 99.3 2.2E-12 7.4E-17 98.1 4.1 54 203-257 12-72 (80)
28 2yur_A Retinoblastoma-binding 99.3 2.5E-12 8.6E-17 95.1 4.2 52 204-258 13-67 (74)
29 3lrq_A E3 ubiquitin-protein li 99.3 1.9E-12 6.6E-17 101.2 3.5 67 206-274 22-91 (100)
30 2ckl_A Polycomb group ring fin 99.2 4.9E-12 1.7E-16 99.7 5.1 51 205-257 14-64 (108)
31 2ckl_B Ubiquitin ligase protei 99.2 3.5E-12 1.2E-16 107.8 4.0 67 206-274 54-121 (165)
32 4ap4_A E3 ubiquitin ligase RNF 99.2 3.7E-12 1.3E-16 102.1 3.7 55 204-258 5-63 (133)
33 1z6u_A NP95-like ring finger p 99.2 5.8E-12 2E-16 105.9 4.8 68 206-276 78-146 (150)
34 2ecw_A Tripartite motif-contai 99.2 7.7E-12 2.6E-16 93.1 4.7 52 204-258 17-74 (85)
35 2y43_A E3 ubiquitin-protein li 99.2 5E-12 1.7E-16 98.1 3.8 50 206-257 22-71 (99)
36 1jm7_A BRCA1, breast cancer ty 99.2 1.8E-11 6E-16 96.3 6.5 49 206-257 21-72 (112)
37 2egp_A Tripartite motif-contai 99.2 3.2E-12 1.1E-16 94.6 1.9 51 204-257 10-67 (79)
38 2ecv_A Tripartite motif-contai 99.2 9.6E-12 3.3E-16 92.6 4.3 52 204-258 17-74 (85)
39 2ct0_A Non-SMC element 1 homol 99.2 1.3E-11 4.6E-16 92.7 4.7 54 202-257 11-66 (74)
40 1g25_A CDK-activating kinase a 99.2 1.4E-11 4.6E-16 88.6 4.6 54 205-258 2-58 (65)
41 2ysj_A Tripartite motif-contai 99.2 2.3E-11 7.8E-16 86.7 4.5 44 203-249 17-63 (63)
42 4ap4_A E3 ubiquitin ligase RNF 99.1 1.4E-11 4.8E-16 98.7 3.0 56 203-258 69-128 (133)
43 1rmd_A RAG1; V(D)J recombinati 99.1 1.7E-11 5.9E-16 97.6 2.7 61 206-269 23-84 (116)
44 2ecj_A Tripartite motif-contai 99.1 3.5E-11 1.2E-15 83.8 3.8 43 204-249 13-58 (58)
45 2kr4_A Ubiquitin conjugation f 99.1 3.8E-11 1.3E-15 91.6 4.0 50 205-257 13-62 (85)
46 3l11_A E3 ubiquitin-protein li 99.1 8.3E-12 2.8E-16 99.3 -0.8 48 205-255 14-62 (115)
47 2kre_A Ubiquitin conjugation f 99.1 6.4E-11 2.2E-15 93.3 4.3 64 204-271 27-90 (100)
48 1wgm_A Ubiquitin conjugation f 99.1 8.6E-11 2.9E-15 92.3 4.8 52 204-258 20-72 (98)
49 3hct_A TNF receptor-associated 99.0 7.8E-11 2.7E-15 94.4 3.0 53 204-259 16-69 (118)
50 1e4u_A Transcriptional repress 99.0 3.4E-10 1.2E-14 85.4 4.3 54 204-258 9-65 (78)
51 2vje_A E3 ubiquitin-protein li 99.0 1.9E-10 6.6E-15 83.2 2.7 48 204-254 6-56 (64)
52 1jm7_B BARD1, BRCA1-associated 98.9 2.3E-10 8E-15 91.5 2.0 47 206-257 22-69 (117)
53 2c2l_A CHIP, carboxy terminus 98.9 6.5E-10 2.2E-14 99.3 4.9 66 204-273 206-272 (281)
54 1bor_A Transcription factor PM 98.9 3E-10 1E-14 79.8 2.1 48 204-257 4-51 (56)
55 3knv_A TNF receptor-associated 98.9 3E-10 1E-14 94.5 2.0 49 204-255 29-78 (141)
56 2yu4_A E3 SUMO-protein ligase 98.9 7.6E-10 2.6E-14 85.7 4.0 64 204-271 5-78 (94)
57 2y1n_A E3 ubiquitin-protein li 98.9 9.4E-10 3.2E-14 105.7 4.3 49 206-257 332-381 (389)
58 2vje_B MDM4 protein; proto-onc 98.8 7.4E-10 2.5E-14 79.9 2.2 49 205-254 6-55 (63)
59 2ecg_A Baculoviral IAP repeat- 98.8 5.6E-09 1.9E-13 77.3 5.1 44 206-256 25-69 (75)
60 4ic3_A E3 ubiquitin-protein li 98.8 9.7E-10 3.3E-14 81.4 0.9 43 206-255 24-67 (74)
61 3hcs_A TNF receptor-associated 98.8 2.7E-09 9.1E-14 90.2 3.0 53 204-259 16-69 (170)
62 1wim_A KIAA0161 protein; ring 98.7 4.9E-09 1.7E-13 80.6 2.9 54 204-257 3-68 (94)
63 2f42_A STIP1 homology and U-bo 98.7 6.5E-09 2.2E-13 90.2 3.6 64 204-271 104-168 (179)
64 3k1l_B Fancl; UBC, ring, RWD, 98.6 4.6E-09 1.6E-13 99.5 0.5 52 204-255 306-373 (381)
65 1vyx_A ORF K3, K3RING; zinc-bi 98.6 4.4E-08 1.5E-12 70.4 4.2 48 204-254 4-58 (60)
66 2ea5_A Cell growth regulator w 98.5 4.5E-08 1.5E-12 71.7 3.6 46 203-255 12-58 (68)
67 2bay_A PRE-mRNA splicing facto 98.5 3.4E-08 1.1E-12 71.1 1.7 50 206-258 3-53 (61)
68 2yho_A E3 ubiquitin-protein li 98.5 2.5E-08 8.6E-13 75.0 0.8 43 206-255 18-61 (79)
69 3htk_C E3 SUMO-protein ligase 98.4 1.7E-07 5.8E-12 85.8 4.6 52 204-257 179-234 (267)
70 3t6p_A Baculoviral IAP repeat- 98.3 1E-07 3.5E-12 90.2 0.9 44 205-255 294-338 (345)
71 3vk6_A E3 ubiquitin-protein li 98.1 2E-06 6.8E-11 67.9 3.9 45 208-254 3-48 (101)
72 3nw0_A Non-structural maintena 97.9 5.3E-06 1.8E-10 74.7 4.1 52 204-257 178-231 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 95.2 0.012 4.2E-07 44.9 3.3 35 205-239 2-36 (101)
74 2ko5_A Ring finger protein Z; 94.3 0.016 5.6E-07 45.1 1.9 50 205-259 27-77 (99)
75 2lri_C Autoimmune regulator; Z 92.3 0.13 4.6E-06 37.1 3.9 45 205-253 11-60 (66)
76 3lqh_A Histone-lysine N-methyl 92.1 0.084 2.9E-06 45.5 3.1 50 206-255 2-66 (183)
77 1wil_A KIAA1045 protein; ring 91.2 0.25 8.5E-06 37.7 4.5 31 205-239 14-47 (89)
78 3m62_A Ubiquitin conjugation f 90.7 0.18 6.3E-06 53.3 4.5 64 204-271 889-953 (968)
79 1we9_A PHD finger family prote 89.9 0.081 2.8E-06 37.4 0.7 49 204-252 4-58 (64)
80 2lv9_A Histone-lysine N-methyl 88.2 0.42 1.5E-05 36.8 3.8 47 205-252 27-76 (98)
81 2xb1_A Pygopus homolog 2, B-ce 84.5 0.18 6.3E-06 39.4 -0.1 48 206-253 3-62 (105)
82 2l5u_A Chromodomain-helicase-D 84.0 0.48 1.6E-05 33.3 1.9 45 204-252 9-58 (61)
83 2k16_A Transcription initiatio 83.6 0.3 1E-05 35.5 0.8 49 205-254 17-70 (75)
84 1wep_A PHF8; structural genomi 83.6 0.84 2.9E-05 33.5 3.2 49 204-253 10-64 (79)
85 1f62_A Transcription factor WS 83.0 0.57 2E-05 31.4 1.9 43 208-251 2-49 (51)
86 2lbm_A Transcriptional regulat 81.3 3.6 0.00012 33.9 6.6 45 203-251 60-116 (142)
87 1mm2_A MI2-beta; PHD, zinc fin 80.6 0.45 1.5E-05 33.5 0.7 48 204-254 7-58 (61)
88 1wem_A Death associated transc 79.9 0.65 2.2E-05 33.8 1.5 50 203-253 13-71 (76)
89 3o36_A Transcription intermedi 79.7 0.56 1.9E-05 39.6 1.2 46 205-253 3-52 (184)
90 2ri7_A Nucleosome-remodeling f 77.8 0.49 1.7E-05 39.5 0.2 48 204-252 6-59 (174)
91 2yt5_A Metal-response element- 76.7 0.37 1.3E-05 34.0 -0.7 51 204-254 4-63 (66)
92 2yql_A PHD finger protein 21A; 76.5 0.26 8.8E-06 34.0 -1.6 45 204-251 7-55 (56)
93 1fp0_A KAP-1 corepressor; PHD 75.9 0.99 3.4E-05 34.4 1.4 49 203-254 22-74 (88)
94 3u5n_A E3 ubiquitin-protein li 75.6 0.54 1.9E-05 40.5 -0.1 46 204-253 5-55 (207)
95 2kgg_A Histone demethylase jar 75.4 1 3.6E-05 30.5 1.3 43 208-250 4-52 (52)
96 2ysm_A Myeloid/lymphoid or mix 72.9 1.1 3.7E-05 34.8 1.0 47 204-250 5-55 (111)
97 2vpb_A Hpygo1, pygopus homolog 72.3 2.8 9.5E-05 29.9 3.0 34 205-238 7-42 (65)
98 2puy_A PHD finger protein 21A; 71.9 0.26 8.9E-06 34.4 -2.5 46 205-253 4-53 (60)
99 3kqi_A GRC5, PHD finger protei 70.9 1.3 4.3E-05 32.3 0.9 49 203-252 7-61 (75)
100 1wew_A DNA-binding family prot 70.1 1.2 4.1E-05 32.7 0.7 48 205-253 15-73 (78)
101 1xwh_A Autoimmune regulator; P 69.0 0.78 2.7E-05 32.6 -0.6 46 204-253 6-56 (66)
102 1weu_A Inhibitor of growth fam 68.6 2.7 9.2E-05 32.1 2.4 45 205-253 35-86 (91)
103 1weo_A Cellulose synthase, cat 67.7 10 0.00036 29.0 5.5 50 205-254 15-69 (93)
104 1wee_A PHD finger family prote 67.5 0.75 2.6E-05 33.2 -0.9 48 205-253 15-67 (72)
105 2ro1_A Transcription intermedi 67.1 1.4 4.7E-05 37.7 0.5 45 206-253 2-50 (189)
106 3o70_A PHD finger protein 13; 66.8 0.92 3.1E-05 32.7 -0.6 46 204-251 17-66 (68)
107 3v43_A Histone acetyltransfera 66.5 1.8 6.2E-05 33.8 1.0 45 207-251 62-111 (112)
108 2cs3_A Protein C14ORF4, MY039 66.4 3.8 0.00013 31.0 2.7 37 205-242 14-52 (93)
109 2l43_A N-teminal domain from h 65.6 1.5 5E-05 33.1 0.3 54 204-257 23-80 (88)
110 3t7l_A Zinc finger FYVE domain 64.2 4.7 0.00016 30.3 3.0 38 203-240 17-55 (90)
111 1wen_A Inhibitor of growth fam 64.2 3.7 0.00013 29.7 2.3 45 205-253 15-66 (71)
112 3ql9_A Transcriptional regulat 63.7 9.9 0.00034 30.8 5.0 44 204-251 55-110 (129)
113 2e6r_A Jumonji/ARID domain-con 58.3 0.9 3.1E-05 34.6 -2.1 48 204-252 14-66 (92)
114 1z2q_A LM5-1; membrane protein 58.0 8.4 0.00029 28.4 3.4 37 203-239 18-55 (84)
115 3kv5_D JMJC domain-containing 57.5 2.4 8E-05 41.6 0.2 47 205-252 36-88 (488)
116 1joc_A EEA1, early endosomal a 56.7 6.9 0.00023 31.2 2.9 37 203-239 66-103 (125)
117 2yw8_A RUN and FYVE domain-con 55.9 7.6 0.00026 28.5 2.8 37 203-239 16-53 (82)
118 3c6w_A P28ING5, inhibitor of g 54.9 2.3 7.9E-05 29.6 -0.2 43 205-251 8-57 (59)
119 3v43_A Histone acetyltransfera 53.7 18 0.00061 27.9 4.8 45 206-250 5-62 (112)
120 2rsd_A E3 SUMO-protein ligase 52.7 1.2 3.9E-05 31.9 -2.2 45 206-251 10-64 (68)
121 3mpx_A FYVE, rhogef and PH dom 51.7 3.1 0.00011 38.9 0.0 56 198-253 367-430 (434)
122 1x4u_A Zinc finger, FYVE domai 50.0 14 0.00046 27.2 3.4 36 203-238 11-47 (84)
123 3shb_A E3 ubiquitin-protein li 49.9 2.8 9.7E-05 30.9 -0.5 43 208-251 28-76 (77)
124 1wev_A Riken cDNA 1110020M19; 49.4 1.5 5.2E-05 33.0 -2.1 49 206-254 16-74 (88)
125 1z60_A TFIIH basal transcripti 48.3 8.5 0.00029 27.1 1.9 42 207-249 16-58 (59)
126 1dvp_A HRS, hepatocyte growth 48.0 8.6 0.00029 33.1 2.3 34 206-239 161-195 (220)
127 1vfy_A Phosphatidylinositol-3- 47.2 12 0.00042 26.7 2.7 33 206-238 11-44 (73)
128 2vnf_A ING 4, P29ING4, inhibit 47.1 3.5 0.00012 28.7 -0.3 42 206-251 10-58 (60)
129 1wfk_A Zinc finger, FYVE domai 46.8 13 0.00043 27.9 2.7 35 205-239 8-43 (88)
130 1y02_A CARP2, FYVE-ring finger 45.8 2.5 8.6E-05 33.9 -1.4 47 206-252 19-66 (120)
131 3zyq_A Hepatocyte growth facto 45.8 9.6 0.00033 33.2 2.3 34 206-239 164-198 (226)
132 2cu8_A Cysteine-rich protein 2 45.1 22 0.00076 24.8 3.8 42 205-256 8-49 (76)
133 3asl_A E3 ubiquitin-protein li 44.8 4.9 0.00017 28.9 0.1 43 208-251 20-68 (70)
134 3i2d_A E3 SUMO-protein ligase 44.8 16 0.00053 34.7 3.7 63 206-271 249-315 (371)
135 2e6s_A E3 ubiquitin-protein li 44.5 4.7 0.00016 29.6 0.0 43 208-251 28-76 (77)
136 1iml_A CRIP, cysteine rich int 44.4 12 0.0004 26.3 2.1 38 209-256 3-40 (76)
137 2g6q_A Inhibitor of growth pro 44.3 4.4 0.00015 28.5 -0.2 42 206-251 11-59 (62)
138 4fo9_A E3 SUMO-protein ligase 42.2 17 0.00058 34.3 3.5 63 206-271 215-281 (360)
139 3mjh_B Early endosome antigen 42.0 3.6 0.00012 26.0 -0.8 15 206-220 5-19 (34)
140 2ku3_A Bromodomain-containing 41.6 24 0.00081 25.3 3.4 49 203-251 13-65 (71)
141 1zbd_B Rabphilin-3A; G protein 39.7 13 0.00045 30.1 2.0 34 205-238 54-89 (134)
142 2co8_A NEDD9 interacting prote 39.6 25 0.00087 25.1 3.4 43 205-257 14-56 (82)
143 3ask_A E3 ubiquitin-protein li 39.6 6.4 0.00022 34.9 0.1 43 208-251 176-224 (226)
144 2gmg_A Hypothetical protein PF 39.1 6.3 0.00021 31.0 -0.0 29 226-259 72-100 (105)
145 4gne_A Histone-lysine N-methyl 38.0 20 0.0007 27.9 2.8 47 204-256 13-66 (107)
146 2zet_C Melanophilin; complex, 37.5 14 0.00049 30.6 1.9 46 205-251 67-116 (153)
147 3a1b_A DNA (cytosine-5)-methyl 37.2 24 0.00081 29.6 3.2 44 204-251 77-133 (159)
148 2d8v_A Zinc finger FYVE domain 36.8 18 0.00063 26.1 2.1 32 204-239 6-38 (67)
149 2o35_A Hypothetical protein DU 36.4 13 0.00045 29.0 1.4 13 230-242 42-54 (105)
150 3o7a_A PHD finger protein 13 v 36.1 5 0.00017 26.9 -0.9 40 211-251 8-51 (52)
151 3fyb_A Protein of unknown func 36.1 13 0.00046 28.9 1.4 13 230-242 41-53 (104)
152 2ysm_A Myeloid/lymphoid or mix 35.0 6.7 0.00023 30.1 -0.5 44 208-252 56-104 (111)
153 2kwj_A Zinc finger protein DPF 33.6 2.2 7.6E-05 33.4 -3.5 44 208-252 60-108 (114)
154 2jvx_A NF-kappa-B essential mo 33.2 5.8 0.0002 23.9 -0.8 17 244-260 4-20 (28)
155 2dj7_A Actin-binding LIM prote 33.1 29 0.001 24.7 2.8 39 206-254 15-53 (80)
156 1wyh_A SLIM 2, skeletal muscle 31.5 40 0.0014 22.9 3.3 43 206-257 5-47 (72)
157 2pv0_B DNA (cytosine-5)-methyl 29.1 33 0.0011 32.7 3.1 45 204-252 91-148 (386)
158 1x4k_A Skeletal muscle LIM-pro 28.9 47 0.0016 22.5 3.3 42 206-256 5-46 (72)
159 1x63_A Skeletal muscle LIM-pro 28.2 63 0.0021 22.5 3.9 43 206-257 15-57 (82)
160 3kv4_A PHD finger protein 8; e 27.9 13 0.00044 36.0 0.1 46 208-253 6-57 (447)
161 1x61_A Thyroid receptor intera 27.7 67 0.0023 21.8 3.9 41 206-255 5-45 (72)
162 1g47_A Pinch protein; LIM doma 27.1 43 0.0015 23.1 2.8 43 206-257 11-53 (77)
163 1x4l_A Skeletal muscle LIM-pro 26.5 72 0.0025 21.6 3.9 41 206-255 5-47 (72)
164 1wd2_A Ariadne-1 protein homol 26.1 12 0.00043 26.0 -0.3 36 206-241 6-46 (60)
165 2jmi_A Protein YNG1, ING1 homo 24.6 15 0.00053 27.8 -0.0 42 205-251 25-75 (90)
166 2l3k_A Rhombotin-2, linker, LI 24.2 35 0.0012 26.3 2.0 40 208-256 10-49 (123)
167 1zfo_A LAsp-1; LIM domain, zin 24.2 30 0.001 20.6 1.2 27 207-235 4-30 (31)
168 1x6a_A LIMK-2, LIM domain kina 23.3 50 0.0017 23.1 2.6 41 206-257 15-55 (81)
169 1a7i_A QCRP2 (LIM1); LIM domai 23.3 29 0.00098 24.5 1.2 42 206-257 7-48 (81)
170 2d8y_A Eplin protein; LIM doma 23.0 66 0.0023 23.1 3.2 42 206-257 15-56 (91)
171 1x64_A Alpha-actinin-2 associa 22.9 90 0.0031 22.3 4.0 41 206-257 25-65 (89)
172 3f6q_B LIM and senescent cell 21.9 44 0.0015 22.4 1.9 42 206-256 11-52 (72)
173 1v6g_A Actin binding LIM prote 21.4 72 0.0025 22.2 3.1 41 207-258 16-56 (81)
174 2d8z_A Four and A half LIM dom 21.1 86 0.0029 21.1 3.4 40 206-256 5-44 (70)
175 2lq6_A Bromodomain-containing 20.5 58 0.002 24.1 2.5 32 206-238 17-50 (87)
176 2d8x_A Protein pinch; LIM doma 20.3 71 0.0024 21.6 2.8 41 206-257 5-45 (70)
177 1x68_A FHL5 protein; four-and- 20.2 89 0.003 21.5 3.3 41 206-255 5-47 (76)
178 1rut_X Flinc4, fusion protein 20.1 51 0.0018 27.2 2.3 41 208-257 71-111 (188)
179 2jmo_A Parkin; IBR, E3 ligase, 20.0 9.2 0.00032 28.0 -2.1 16 226-241 55-70 (80)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.69 E-value=3.1e-17 Score=126.60 Aligned_cols=75 Identities=35% Similarity=0.718 Sum_probs=65.5
Q ss_pred CCCCCCchhhHHHHhcCCCccCCC------CcccccccccccCCCCceeEcCCCCcccHhhHHHHHhcCCCCCCccccCC
Q 023542 181 EKEGRDVAAAVAAVVRLPSVDGAG------ADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLP 254 (281)
Q Consensus 181 ~~~~~~~~as~~~i~~LP~~~~~~------~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~ 254 (281)
.......+++++.++.+|...+.. ++..|+||+++|..++.++.+||+|.||..||++|++.+.+||+||..+.
T Consensus 9 ~~~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 9 SHMVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp CCSSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCCcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 344467889999999999887632 46779999999998888889999999999999999999999999999986
Q ss_pred C
Q 023542 255 T 255 (281)
Q Consensus 255 ~ 255 (281)
.
T Consensus 89 ~ 89 (91)
T 2l0b_A 89 P 89 (91)
T ss_dssp C
T ss_pred C
Confidence 5
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.6e-16 Score=117.80 Aligned_cols=62 Identities=34% Similarity=0.673 Sum_probs=52.6
Q ss_pred hcCCCccC-----CCCcccccccccccCCCCceeEcCCCCcccHhhHHHHHhcCCCCCCccccCCCC
Q 023542 195 VRLPSVDG-----AGADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPTD 256 (281)
Q Consensus 195 ~~LP~~~~-----~~~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~~~ 256 (281)
+.+|...+ ..++.+|+||+++|..++.++.+||+|.||..||.+|++.+.+||+||+.+...
T Consensus 7 ~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 7 GQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred hhCCcEEecCccccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 44555544 235778999999999988888999999999999999999999999999998764
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.53 E-value=3.7e-15 Score=103.61 Aligned_cols=51 Identities=35% Similarity=0.811 Sum_probs=46.4
Q ss_pred CCcccccccccccCCCCceeEcC-CCCcccHhhHHHHHhcCCCCCCccccCC
Q 023542 204 GADQCCVICKEEMGGGRDVCELP-CKHLFHWLCILPWLKKRNTCPCCRFRLP 254 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~LP-C~H~FH~~CI~~WL~~~~tCPlCR~~l~ 254 (281)
+++.+|+||+++|.+++.+..++ |+|.||..||.+|++++.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 34678999999999988888887 9999999999999999999999999874
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=1.2e-14 Score=105.71 Aligned_cols=54 Identities=37% Similarity=0.892 Sum_probs=48.4
Q ss_pred CCcccccccccccCCCCceeEcCCCCcccHhhHHHHHhcCCCCCCccccCCCCC
Q 023542 204 GADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPTDD 257 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 257 (281)
.++..|+||++.|..++.+..+||+|.||..||.+|++.+.+||+||..+....
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 446789999999988888889999999999999999999999999999986543
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.51 E-value=9.7e-15 Score=108.55 Aligned_cols=56 Identities=43% Similarity=1.003 Sum_probs=50.4
Q ss_pred CCcccccccccccCCCCceeEcCCCCcccHhhHHHHHhcCCCCCCccccCCCCCch
Q 023542 204 GADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPTDDVF 259 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~~~~~~ 259 (281)
.++.+|+||+++|.+++.+..++|+|.||..||.+|++.+.+||+||..+..++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTA 68 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccC
Confidence 44778999999999888888899999999999999999999999999999776654
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.4e-14 Score=106.63 Aligned_cols=54 Identities=30% Similarity=0.787 Sum_probs=48.5
Q ss_pred CCcccccccccccCCCCceeEcCCCCcccHhhHHHHHhcCCCCCCccccCCCCC
Q 023542 204 GADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPTDD 257 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 257 (281)
.++.+|+||+++|..++.+..+||+|.||..||.+|++.+.+||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence 446789999999999888888899999999999999999999999999986543
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=2.9e-14 Score=107.89 Aligned_cols=59 Identities=25% Similarity=0.518 Sum_probs=46.5
Q ss_pred CCccCCCCcccccccccccCC-----------CCceeEcC-CCCcccHhhHHHHHhcCCCCCCccccCCCC
Q 023542 198 PSVDGAGADQCCVICKEEMGG-----------GRDVCELP-CKHLFHWLCILPWLKKRNTCPCCRFRLPTD 256 (281)
Q Consensus 198 P~~~~~~~~~~CaICLeef~~-----------~~~vr~LP-C~H~FH~~CI~~WL~~~~tCPlCR~~l~~~ 256 (281)
+....+.++..|+||+++|.+ ++.++.++ |+|.||..||++|++++.+||+||+++..+
T Consensus 7 ~~w~~~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 7 GMWSWDVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCCCCSCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred EEeeecCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 334445567789999999864 34455664 999999999999999999999999998644
No 8
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.46 E-value=4.7e-14 Score=111.98 Aligned_cols=66 Identities=21% Similarity=0.466 Sum_probs=47.8
Q ss_pred HHHHhcCCCccCCCCcccccccccccCCCC---------------ceeEcCCCCcccHhhHHHHH-----hcCCCCCCcc
Q 023542 191 VAAVVRLPSVDGAGADQCCVICKEEMGGGR---------------DVCELPCKHLFHWLCILPWL-----KKRNTCPCCR 250 (281)
Q Consensus 191 ~~~i~~LP~~~~~~~~~~CaICLeef~~~~---------------~vr~LPC~H~FH~~CI~~WL-----~~~~tCPlCR 250 (281)
++.+...........+.+|+||+++|.++. .++.++|+|.||..||.+|+ ..+.+||+||
T Consensus 10 ~~~i~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR 89 (114)
T 1v87_A 10 EQVIRKYTEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCK 89 (114)
T ss_dssp HHHHHHHEEECSSCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTC
T ss_pred HHHHHHHHHhccCCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCC
Confidence 344444333332344678999999997653 34467999999999999999 4567999999
Q ss_pred ccCCCC
Q 023542 251 FRLPTD 256 (281)
Q Consensus 251 ~~l~~~ 256 (281)
..+...
T Consensus 90 ~~~~~~ 95 (114)
T 1v87_A 90 TIYGEK 95 (114)
T ss_dssp CBSSSC
T ss_pred CccCCC
Confidence 988543
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.44 E-value=6.6e-14 Score=97.05 Aligned_cols=51 Identities=33% Similarity=0.645 Sum_probs=44.3
Q ss_pred CCcccccccccccCCCC-ceeEcCCCCcccHhhHHHHHhcCCCCCCccccCC
Q 023542 204 GADQCCVICKEEMGGGR-DVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLP 254 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~-~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~ 254 (281)
.++.+|+||+++|.+++ .+..++|+|.||..||.+|++.+.+||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 35678999999996543 5677899999999999999999999999999874
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.43 E-value=5.1e-14 Score=102.34 Aligned_cols=55 Identities=29% Similarity=0.594 Sum_probs=47.2
Q ss_pred CCcccccccccccCCC----CceeEcCCCCcccHhhHHHHHhcCCCCCCccccCCCCCc
Q 023542 204 GADQCCVICKEEMGGG----RDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPTDDV 258 (281)
Q Consensus 204 ~~~~~CaICLeef~~~----~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~~~~~ 258 (281)
.++.+|+||+++|.++ +....++|||.||..||.+|++.+.+||+||..+..++.
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence 4578899999999753 445678999999999999999999999999999987654
No 11
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.42 E-value=6.1e-14 Score=99.64 Aligned_cols=54 Identities=31% Similarity=0.596 Sum_probs=46.7
Q ss_pred CcccccccccccCCC----CceeEcCCCCcccHhhHHHHHhcCCCCCCccccCCCCCc
Q 023542 205 ADQCCVICKEEMGGG----RDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPTDDV 258 (281)
Q Consensus 205 ~~~~CaICLeef~~~----~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~~~~~ 258 (281)
++.+|+||++++.++ +.+..++|||.||..|+.+|++++.+||+||..+..++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 59 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 59 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccce
Confidence 467899999999753 344677999999999999999999999999999987664
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.5e-13 Score=98.94 Aligned_cols=52 Identities=31% Similarity=0.634 Sum_probs=44.6
Q ss_pred CCcccccccccccCCC----CceeEcCCCCcccHhhHHHHHhcCCCCCCccccCCC
Q 023542 204 GADQCCVICKEEMGGG----RDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPT 255 (281)
Q Consensus 204 ~~~~~CaICLeef~~~----~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~~ 255 (281)
.++.+|+||++.|.++ ..+..++|+|.||..||.+|++.+.+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 4577899999999764 334678999999999999999999999999998864
No 13
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.37 E-value=3.6e-13 Score=107.59 Aligned_cols=52 Identities=31% Similarity=0.580 Sum_probs=44.7
Q ss_pred CCCcccccccccccCCCC---------------ceeEcCCCCcccHhhHHHHHhcCCCCCCccccCC
Q 023542 203 AGADQCCVICKEEMGGGR---------------DVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLP 254 (281)
Q Consensus 203 ~~~~~~CaICLeef~~~~---------------~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~ 254 (281)
+.++..|+||+++|.++. .+..++|+|.||..||++||+++.+||+||+.+.
T Consensus 34 d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 34 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 456788999999998652 3566799999999999999999999999999874
No 14
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.33 E-value=2e-14 Score=117.07 Aligned_cols=52 Identities=31% Similarity=0.580 Sum_probs=2.4
Q ss_pred CCCcccccccccccCCCC---------------ceeEcCCCCcccHhhHHHHHhcCCCCCCccccCC
Q 023542 203 AGADQCCVICKEEMGGGR---------------DVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLP 254 (281)
Q Consensus 203 ~~~~~~CaICLeef~~~~---------------~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~ 254 (281)
+.++..|+||+++|+++. .+..++|+|.||..||++||+.+.+||+||+++.
T Consensus 45 d~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 45 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CCCC---------------------------------------------------------------
T ss_pred cCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 556788999999997532 2233489999999999999999999999999874
No 15
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=3.2e-13 Score=98.26 Aligned_cols=51 Identities=29% Similarity=0.763 Sum_probs=44.8
Q ss_pred CCcccccccccccCCCCceeEcCCCCcccHhhHHHHHhcCCCCCCccccCCCCCc
Q 023542 204 GADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPTDDV 258 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~~~~~ 258 (281)
.++..|+||++.+.+ ..+||+|.||..||.+|++++.+||+||..+...+.
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence 457789999999875 578999999999999999999999999999976553
No 16
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.1e-12 Score=96.22 Aligned_cols=54 Identities=24% Similarity=0.449 Sum_probs=45.3
Q ss_pred CCcccccccccccCCCCceeEcCCCCcccHhhHHHHHhcCCCCCCccccCCCCCch
Q 023542 204 GADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPTDDVF 259 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~~~~~~ 259 (281)
.++..|+||++.+.++ +..++|+|.||..||.+|++.+.+||+||..+...+..
T Consensus 13 ~~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 13 TPYILCSICKGYLIDA--TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp CGGGSCTTTSSCCSSC--EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSC
T ss_pred CCCCCCCCCChHHHCc--CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccc
Confidence 4477899999999753 33349999999999999999999999999999776654
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.32 E-value=8e-13 Score=95.47 Aligned_cols=50 Identities=32% Similarity=0.859 Sum_probs=43.2
Q ss_pred CCcccccccccccCCCCceeEcCCCCcccHhhHHHHHhcCCCCCCccccCCC
Q 023542 204 GADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPT 255 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~~ 255 (281)
.++.+|+||++.+.+ .+..+||+|.||..|+.+|++.+.+||+||..+..
T Consensus 3 ~~~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 446789999999864 34678999999999999999999999999998853
No 18
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1e-12 Score=94.80 Aligned_cols=52 Identities=21% Similarity=0.461 Sum_probs=44.4
Q ss_pred CCcccccccccccCCCCceeEcCCCCcccHhhHHHHHh-cCCCCCCccccCCCCCc
Q 023542 204 GADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLK-KRNTCPCCRFRLPTDDV 258 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~-~~~tCPlCR~~l~~~~~ 258 (281)
.++..|+||++.+.++. .++|||.||..||.+|++ .+.+||+||..+..++.
T Consensus 13 ~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPK---QTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCEECTTTCCEESSCC---CCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred CcCCCCCCCChHhcCee---ECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 45788999999998665 479999999999999995 56799999999987664
No 19
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.31 E-value=6.3e-13 Score=109.60 Aligned_cols=51 Identities=31% Similarity=0.736 Sum_probs=44.2
Q ss_pred cccccccccccCCCCceeEcCCCCcccHhhHHHHHhcCCCCCCccccCCCCCch
Q 023542 206 DQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPTDDVF 259 (281)
Q Consensus 206 ~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~~~~~~ 259 (281)
+..|+||++.|.++ ..+||||.||..||..|+..+.+||+||.++......
T Consensus 53 ~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 103 (138)
T 4ayc_A 53 ELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYS 103 (138)
T ss_dssp HSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEEEC
T ss_pred cCCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCCCCc
Confidence 56799999999754 4789999999999999999999999999999765543
No 20
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1e-12 Score=98.46 Aligned_cols=63 Identities=22% Similarity=0.450 Sum_probs=48.6
Q ss_pred CCcccccccccccCCCCceeEcCCCCcccHhhHHHHHhcCCCCCCccccCCCCCchhHHHHHHHHHHH
Q 023542 204 GADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPTDDVFGEIERLWDALVK 271 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~~~~~~~e~~rl~~~l~~ 271 (281)
.+...|+||++.|.++. .++|+|.||..||.+|++...+||+||..+. ..+.....+.+.+++
T Consensus 13 ~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~--~~~~~~~~l~~~~~~ 75 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPV---VTKCRHYFCESCALEHFRATPRCYICDQPTG--GIFNPAKELMAKLQK 75 (81)
T ss_dssp CCCSBCSSSCSBCCSEE---ECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC--SCCEECHHHHHHHSS
T ss_pred CCCCCCcCCCchhcCee---EccCCCHhHHHHHHHHHHCCCcCCCcCcccc--ccCCcHHHHHHHHHh
Confidence 34678999999996543 6899999999999999999999999999986 333344444444443
No 21
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.6e-12 Score=97.97 Aligned_cols=54 Identities=22% Similarity=0.344 Sum_probs=46.0
Q ss_pred CCcccccccccccCCCCc-eeEcCCCCcccHhhHHHHHhcC---CCCCCccccCCCCC
Q 023542 204 GADQCCVICKEEMGGGRD-VCELPCKHLFHWLCILPWLKKR---NTCPCCRFRLPTDD 257 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~-vr~LPC~H~FH~~CI~~WL~~~---~tCPlCR~~l~~~~ 257 (281)
.+..+|+||++.|.+.+. ...++|||.||..|+.+|++.+ .+||+||..+...+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 457789999999987553 6678999999999999999875 79999999987654
No 22
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=6.3e-13 Score=97.36 Aligned_cols=49 Identities=31% Similarity=0.622 Sum_probs=42.6
Q ss_pred CCcccccccccccCCCCceeEcCCCCcccHhhHHHHHhcCCCCCCccccCCC
Q 023542 204 GADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPT 255 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~~ 255 (281)
.++..|+||++.+.++ ..+||+|.||..||.+|+..+.+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 4467899999998654 467999999999999999999999999999853
No 23
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.28 E-value=1.7e-12 Score=104.82 Aligned_cols=68 Identities=21% Similarity=0.334 Sum_probs=54.7
Q ss_pred cccccccccccCCCCceeEcCCCCcccHhhHHHHHhcCC-CCCCccccCCCCCchhHHHHHHHHHHHhcCCC
Q 023542 206 DQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRN-TCPCCRFRLPTDDVFGEIERLWDALVKTSGGG 276 (281)
Q Consensus 206 ~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~~-tCPlCR~~l~~~~~~~e~~rl~~~l~~~~~~~ 276 (281)
+..|+||++.|.++. .+||||.||..||..|+..+. +||+||..+...........+.+.+++.-+|-
T Consensus 52 ~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~~ 120 (124)
T 3fl2_A 52 TFQCICCQELVFRPI---TTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPGY 120 (124)
T ss_dssp HTBCTTTSSBCSSEE---ECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTTT
T ss_pred CCCCCcCChHHcCcE---EeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcccc
Confidence 578999999997543 679999999999999998554 89999999987555666667777777765553
No 24
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.28 E-value=2.8e-12 Score=97.99 Aligned_cols=55 Identities=27% Similarity=0.530 Sum_probs=44.1
Q ss_pred CCcccccccccccCCCCceeEcC-CCCcccHhhHHHHHhcC--CCCCCccccCCCCCchhH
Q 023542 204 GADQCCVICKEEMGGGRDVCELP-CKHLFHWLCILPWLKKR--NTCPCCRFRLPTDDVFGE 261 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~LP-C~H~FH~~CI~~WL~~~--~tCPlCR~~l~~~~~~~e 261 (281)
.++..|+||++.|.++. .+| |||.||..||..|+..+ .+||+||..+...+....
T Consensus 11 ~~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~ 68 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAV---VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIA 68 (92)
T ss_dssp CTTTEETTTTEECSSCE---ECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEE
T ss_pred CcCCCCCCCChhhcCce---ECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCc
Confidence 34788999999997654 789 99999999999999754 589999999854443333
No 25
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=2.2e-12 Score=94.22 Aligned_cols=52 Identities=21% Similarity=0.493 Sum_probs=43.3
Q ss_pred CCcccccccccccCCCCceeEcCCCCcccHhhHHHHHh---cCCCCCCccccCCCCCc
Q 023542 204 GADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLK---KRNTCPCCRFRLPTDDV 258 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~---~~~tCPlCR~~l~~~~~ 258 (281)
.++..|+||++.+.++ ..++|+|.||..||.+|++ .+.+||+||..+..++.
T Consensus 18 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 18 QEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred ccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 4578899999998753 3669999999999999997 45589999999876653
No 26
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.28 E-value=2.9e-12 Score=94.99 Aligned_cols=52 Identities=21% Similarity=0.280 Sum_probs=44.3
Q ss_pred CCcccccccccccCCCCceeEcCCCCcccHhhHHHHHhc-CCCCCCccccCCCCCc
Q 023542 204 GADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKK-RNTCPCCRFRLPTDDV 258 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~l~~~~~ 258 (281)
.++..|+||++.|.++. .++|||.||+.||.+|++. +.+||+||..+..++.
T Consensus 6 ~~~~~C~IC~~~~~~Pv---~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l 58 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPV---IVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGL 58 (78)
T ss_dssp SSSSSCTTTSCCCSSEE---EETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCC
T ss_pred cccCCCCCccccccCCE---EcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhC
Confidence 34778999999997654 5699999999999999987 7799999999976553
No 27
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=2.2e-12 Score=98.12 Aligned_cols=54 Identities=24% Similarity=0.707 Sum_probs=45.0
Q ss_pred CCCcccccccccccCCCCceeEcCCC-----CcccHhhHHHHHhcC--CCCCCccccCCCCC
Q 023542 203 AGADQCCVICKEEMGGGRDVCELPCK-----HLFHWLCILPWLKKR--NTCPCCRFRLPTDD 257 (281)
Q Consensus 203 ~~~~~~CaICLeef~~~~~vr~LPC~-----H~FH~~CI~~WL~~~--~tCPlCR~~l~~~~ 257 (281)
..++..|.||+++|++++.+ .+||+ |.||..||++|+..+ .+||+||+.+..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 34567899999999877665 58996 999999999999865 48999999996554
No 28
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.27 E-value=2.5e-12 Score=95.10 Aligned_cols=52 Identities=29% Similarity=0.577 Sum_probs=43.3
Q ss_pred CCcccccccccccCCCCceeEcC-CCCcccHhhHHHHHhcC--CCCCCccccCCCCCc
Q 023542 204 GADQCCVICKEEMGGGRDVCELP-CKHLFHWLCILPWLKKR--NTCPCCRFRLPTDDV 258 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~LP-C~H~FH~~CI~~WL~~~--~tCPlCR~~l~~~~~ 258 (281)
.++..|+||++.|.++. .++ |+|.||..||.+|++.+ .+||+||..+...+.
T Consensus 13 ~~~~~C~IC~~~~~~p~---~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2yur_A 13 PDELLCLICKDIMTDAV---VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDA 67 (74)
T ss_dssp CGGGSCSSSCCCCTTCE---ECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTT
T ss_pred CCCCCCcCCChHHhCCe---EcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccc
Confidence 34788999999997644 688 99999999999999865 689999998765543
No 29
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.26 E-value=1.9e-12 Score=101.25 Aligned_cols=67 Identities=25% Similarity=0.477 Sum_probs=49.9
Q ss_pred cccccccccccCCCCceeEcCCCCcccHhhHHHHHhcC-CCCCCccccCCCCCchh--HHHHHHHHHHHhcC
Q 023542 206 DQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKR-NTCPCCRFRLPTDDVFG--EIERLWDALVKTSG 274 (281)
Q Consensus 206 ~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~-~tCPlCR~~l~~~~~~~--e~~rl~~~l~~~~~ 274 (281)
+..|+||++.|.++ +..++|||.||..||.+|+... .+||+||..+..++... ..+.+.+.++++..
T Consensus 22 ~~~C~IC~~~~~~p--~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~~ 91 (100)
T 3lrq_A 22 VFRCFICMEKLRDA--RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQL 91 (100)
T ss_dssp HTBCTTTCSBCSSE--EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHCC
T ss_pred CCCCccCCccccCc--cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHHH
Confidence 67899999999743 2237999999999999999987 69999999997655322 24445555555443
No 30
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.24 E-value=4.9e-12 Score=99.73 Aligned_cols=51 Identities=24% Similarity=0.586 Sum_probs=43.6
Q ss_pred CcccccccccccCCCCceeEcCCCCcccHhhHHHHHhcCCCCCCccccCCCCC
Q 023542 205 ADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPTDD 257 (281)
Q Consensus 205 ~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 257 (281)
++..|+||++.|.++ +...+|||.||..||..|+..+.+||+||..+....
T Consensus 14 ~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDA--TTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTR 64 (108)
T ss_dssp GGTBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSC
T ss_pred CcCCCccCChHHhCc--CEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccC
Confidence 467899999999753 333499999999999999999999999999998653
No 31
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.23 E-value=3.5e-12 Score=107.75 Aligned_cols=67 Identities=22% Similarity=0.440 Sum_probs=50.7
Q ss_pred cccccccccccCCCCceeEcCCCCcccHhhHHHHHhc-CCCCCCccccCCCCCchhHHHHHHHHHHHhcC
Q 023542 206 DQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKK-RNTCPCCRFRLPTDDVFGEIERLWDALVKTSG 274 (281)
Q Consensus 206 ~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~l~~~~~~~e~~rl~~~l~~~~~ 274 (281)
+..|+||++.|.+ .+..++|||.||..||.+|+.. +.+||+||..+...+.......+.+.++++.+
T Consensus 54 ~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 54 ELMCPICLDMLKN--TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp HHBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred CCCCcccChHhhC--cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 5689999999975 3334599999999999999997 77899999999766655444455555554433
No 32
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.23 E-value=3.7e-12 Score=102.10 Aligned_cols=55 Identities=29% Similarity=0.594 Sum_probs=47.2
Q ss_pred CCcccccccccccCCC----CceeEcCCCCcccHhhHHHHHhcCCCCCCccccCCCCCc
Q 023542 204 GADQCCVICKEEMGGG----RDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPTDDV 258 (281)
Q Consensus 204 ~~~~~CaICLeef~~~----~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~~~~~ 258 (281)
.++.+|+||++.|.++ +.+..++|||.||..||.+|++.+.+||+||..+..++.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 63 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence 4578899999999764 345678999999999999999999999999999976654
No 33
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.22 E-value=5.8e-12 Score=105.89 Aligned_cols=68 Identities=25% Similarity=0.309 Sum_probs=54.8
Q ss_pred cccccccccccCCCCceeEcCCCCcccHhhHHHHHhcCC-CCCCccccCCCCCchhHHHHHHHHHHHhcCCC
Q 023542 206 DQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRN-TCPCCRFRLPTDDVFGEIERLWDALVKTSGGG 276 (281)
Q Consensus 206 ~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~~-tCPlCR~~l~~~~~~~e~~rl~~~l~~~~~~~ 276 (281)
...|+||++.|.++. .+||+|.||..||..|+.... +||+||..+.....+.....+.+.+++.-++.
T Consensus 78 ~~~C~IC~~~~~~pv---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p~~ 146 (150)
T 1z6u_A 78 SFMCVCCQELVYQPV---TTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFPGY 146 (150)
T ss_dssp HTBCTTTSSBCSSEE---ECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHSTTT
T ss_pred CCEeecCChhhcCCE---EcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhhHh
Confidence 568999999997544 589999999999999998765 89999999988766666666666666665544
No 34
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.22 E-value=7.7e-12 Score=93.11 Aligned_cols=52 Identities=27% Similarity=0.612 Sum_probs=44.2
Q ss_pred CCcccccccccccCCCCceeEcCCCCcccHhhHHHHHhc------CCCCCCccccCCCCCc
Q 023542 204 GADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKK------RNTCPCCRFRLPTDDV 258 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~------~~tCPlCR~~l~~~~~ 258 (281)
.++..|+||++.|.++. .++|+|.||..|+..|+.. ...||+||..+..++.
T Consensus 17 ~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPV---SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNL 74 (85)
T ss_dssp CTTTSCTTTCSCCSSCE---ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCC
T ss_pred ccCCCCcCCChhhCcce---eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhC
Confidence 34678999999997654 6799999999999999987 6689999999876543
No 35
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.22 E-value=5e-12 Score=98.07 Aligned_cols=50 Identities=28% Similarity=0.519 Sum_probs=42.5
Q ss_pred cccccccccccCCCCceeEcCCCCcccHhhHHHHHhcCCCCCCccccCCCCC
Q 023542 206 DQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPTDD 257 (281)
Q Consensus 206 ~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 257 (281)
+..|+||++.|.++. ...+|||.||..||.+|+..+.+||+||..+...+
T Consensus 22 ~~~C~IC~~~~~~p~--~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 71 (99)
T 2y43_A 22 LLRCGICFEYFNIAM--IIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPD 71 (99)
T ss_dssp HTBCTTTCSBCSSEE--ECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred CCCcccCChhhCCcC--EECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhh
Confidence 578999999997533 23489999999999999999999999999987644
No 36
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.21 E-value=1.8e-11 Score=96.30 Aligned_cols=49 Identities=27% Similarity=0.639 Sum_probs=41.9
Q ss_pred cccccccccccCCCCceeEcCCCCcccHhhHHHHHhcCC---CCCCccccCCCCC
Q 023542 206 DQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRN---TCPCCRFRLPTDD 257 (281)
Q Consensus 206 ~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~~---tCPlCR~~l~~~~ 257 (281)
...|+||++.|.++. .++|||.||..||..|+..+. +||+||..+...+
T Consensus 21 ~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 21 ILECPICLELIKEPV---STKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp HTSCSSSCCCCSSCC---BCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCCCcccChhhcCeE---ECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 567999999997654 579999999999999998654 8999999987654
No 37
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.20 E-value=3.2e-12 Score=94.56 Aligned_cols=51 Identities=25% Similarity=0.548 Sum_probs=43.5
Q ss_pred CCcccccccccccCCCCceeEcCCCCcccHhhHHHHHhc-------CCCCCCccccCCCCC
Q 023542 204 GADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKK-------RNTCPCCRFRLPTDD 257 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~-------~~tCPlCR~~l~~~~ 257 (281)
.++..|+||++.|.++. .+||||.||..||.+|++. ..+||+||..+..++
T Consensus 10 ~~~~~C~IC~~~~~~p~---~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 10 QEEVTCPICLELLTEPL---SLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCCEETTTTEECSSCC---CCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred ccCCCCcCCCcccCCee---ECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence 45788999999997654 5799999999999999986 568999999987654
No 38
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=9.6e-12 Score=92.60 Aligned_cols=52 Identities=29% Similarity=0.648 Sum_probs=44.1
Q ss_pred CCcccccccccccCCCCceeEcCCCCcccHhhHHHHHhc------CCCCCCccccCCCCCc
Q 023542 204 GADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKK------RNTCPCCRFRLPTDDV 258 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~------~~tCPlCR~~l~~~~~ 258 (281)
.++..|+||++.+.++. .++|+|.||..|+..|++. ...||+||..+..++.
T Consensus 17 ~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPL---SLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENI 74 (85)
T ss_dssp CCCCCCTTTCSCCSSCB---CCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSC
T ss_pred cCCCCCCCCCcccCCce---eCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhc
Confidence 44778999999997654 5699999999999999987 7799999999876543
No 39
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=1.3e-11 Score=92.71 Aligned_cols=54 Identities=22% Similarity=0.502 Sum_probs=44.8
Q ss_pred CCCCcccccccccccCCCCceeEcCCCCcccHhhHHHHHhcC--CCCCCccccCCCCC
Q 023542 202 GAGADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKR--NTCPCCRFRLPTDD 257 (281)
Q Consensus 202 ~~~~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~--~tCPlCR~~l~~~~ 257 (281)
+.+...+|+||.+.+..+++.. .|+|.||..||.+||+++ .+||+||.++..+.
T Consensus 11 y~~~i~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 11 YPDAVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp CSSSSCBCSSSCCBCSSSEECS--SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred ccCCCCcCcchhhHcccCCccC--CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 3455678999999998765332 799999999999999987 79999999987554
No 40
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.19 E-value=1.4e-11 Score=88.57 Aligned_cols=54 Identities=22% Similarity=0.385 Sum_probs=43.7
Q ss_pred Cccccccccc-ccCCCCce-eEcCCCCcccHhhHHHHHhc-CCCCCCccccCCCCCc
Q 023542 205 ADQCCVICKE-EMGGGRDV-CELPCKHLFHWLCILPWLKK-RNTCPCCRFRLPTDDV 258 (281)
Q Consensus 205 ~~~~CaICLe-ef~~~~~v-r~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~l~~~~~ 258 (281)
++..|+||++ .+.++... ..++|||.||..||.+|+.+ +.+||+||..+..++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence 3578999999 78766533 45699999999999999765 4689999999976654
No 41
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=2.3e-11 Score=86.71 Aligned_cols=44 Identities=25% Similarity=0.510 Sum_probs=37.2
Q ss_pred CCCcccccccccccCCCCceeEcCCCCcccHhhHHHHHh---cCCCCCCc
Q 023542 203 AGADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLK---KRNTCPCC 249 (281)
Q Consensus 203 ~~~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~---~~~tCPlC 249 (281)
..++..|+||++.|.++. .++|||.||..||.+|++ .+.+||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPV---TIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSCE---ECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCeE---EeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 345788999999997543 669999999999999998 45689998
No 42
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.14 E-value=1.4e-11 Score=98.72 Aligned_cols=56 Identities=29% Similarity=0.587 Sum_probs=47.7
Q ss_pred CCCcccccccccccCCC----CceeEcCCCCcccHhhHHHHHhcCCCCCCccccCCCCCc
Q 023542 203 AGADQCCVICKEEMGGG----RDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPTDDV 258 (281)
Q Consensus 203 ~~~~~~CaICLeef~~~----~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~~~~~ 258 (281)
..++..|+||++.|.++ .....++|||.||..||++|++.+.+||+||..+..++.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 128 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 128 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcc
Confidence 56688899999999753 334677999999999999999999999999999987654
No 43
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.12 E-value=1.7e-11 Score=97.63 Aligned_cols=61 Identities=33% Similarity=0.689 Sum_probs=47.6
Q ss_pred cccccccccccCCCCceeEcCCCCcccHhhHHHHHhc-CCCCCCccccCCCCCchhHHHHHHHHH
Q 023542 206 DQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKK-RNTCPCCRFRLPTDDVFGEIERLWDAL 269 (281)
Q Consensus 206 ~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~l~~~~~~~e~~rl~~~l 269 (281)
+..|+||++.+.++. .++|||.||..||.+|+.. +.+||+||..+...+.......+.+.+
T Consensus 23 ~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i 84 (116)
T 1rmd_A 23 SISCQICEHILADPV---ETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNIL 84 (116)
T ss_dssp HTBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHH
T ss_pred CCCCCCCCcHhcCcE---EcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHH
Confidence 578999999997543 5799999999999999987 779999999998766444333333333
No 44
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=3.5e-11 Score=83.83 Aligned_cols=43 Identities=28% Similarity=0.736 Sum_probs=36.4
Q ss_pred CCcccccccccccCCCCceeEcCCCCcccHhhHHHHHh---cCCCCCCc
Q 023542 204 GADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLK---KRNTCPCC 249 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~---~~~tCPlC 249 (281)
.++..|+||++.+.++. .++|+|.||..||.+|+. .+.+||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPV---IIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCC---CCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccE---eCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34678999999998654 579999999999999954 56789998
No 45
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.11 E-value=3.8e-11 Score=91.62 Aligned_cols=50 Identities=20% Similarity=0.106 Sum_probs=44.7
Q ss_pred CcccccccccccCCCCceeEcCCCCcccHhhHHHHHhcCCCCCCccccCCCCC
Q 023542 205 ADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPTDD 257 (281)
Q Consensus 205 ~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 257 (281)
+...|+||++.|+++. .++|||.|++.||.+|+..+.+||+||..+...+
T Consensus 13 ~~~~CpI~~~~m~dPV---~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 62 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDPV---RLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESM 62 (85)
T ss_dssp TTTBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred hheECcccCchhcCCe---ECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHh
Confidence 4788999999998765 7799999999999999999999999999987654
No 46
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.08 E-value=8.3e-12 Score=99.35 Aligned_cols=48 Identities=31% Similarity=0.630 Sum_probs=41.3
Q ss_pred CcccccccccccCCCCceeEcCCCCcccHhhHHHHHhc-CCCCCCccccCCC
Q 023542 205 ADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKK-RNTCPCCRFRLPT 255 (281)
Q Consensus 205 ~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~-~~tCPlCR~~l~~ 255 (281)
++..|+||++.|.++. .++|||.||..||.+|+.. +.+||+||..+..
T Consensus 14 ~~~~C~iC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVEPV---TLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSSCE---ECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCcee---EcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 4678999999997544 6799999999999999976 6689999999853
No 47
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.08 E-value=6.4e-11 Score=93.32 Aligned_cols=64 Identities=17% Similarity=0.127 Sum_probs=50.8
Q ss_pred CCcccccccccccCCCCceeEcCCCCcccHhhHHHHHhcCCCCCCccccCCCCCchhHHHHHHHHHHH
Q 023542 204 GADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPTDDVFGEIERLWDALVK 271 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~~~~~~~e~~rl~~~l~~ 271 (281)
.+...|+||++.|.++. .+||||.|++.||.+|+..+.+||+||..+...+. ..+..+.+.++.
T Consensus 27 p~~~~CpI~~~~m~dPV---~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L-~pn~~Lk~~I~~ 90 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPV---RLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESML-EPVPELKEQIQA 90 (100)
T ss_dssp STTTBCTTTCSBCSSEE---EETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSS-EECHHHHHHHHH
T ss_pred cHhhCCcCccCcccCCe---ECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhc-eECHHHHHHHHH
Confidence 34788999999998766 77899999999999999988999999999987553 333444444444
No 48
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.07 E-value=8.6e-11 Score=92.25 Aligned_cols=52 Identities=21% Similarity=0.094 Sum_probs=45.8
Q ss_pred CCcccccccccccCCCCceeEcCCC-CcccHhhHHHHHhcCCCCCCccccCCCCCc
Q 023542 204 GADQCCVICKEEMGGGRDVCELPCK-HLFHWLCILPWLKKRNTCPCCRFRLPTDDV 258 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~LPC~-H~FH~~CI~~WL~~~~tCPlCR~~l~~~~~ 258 (281)
.++..|+||++.|+++. .++|| |.|++.||.+|+..+.+||+||..+...+.
T Consensus 20 p~~~~CpI~~~~m~dPV---~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L 72 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPV---VLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQI 72 (98)
T ss_dssp CTTTBCTTTCSBCSSEE---ECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTS
T ss_pred cHhcCCcCccccccCCe---ECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhc
Confidence 34788999999998765 78999 999999999999998999999999987653
No 49
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.03 E-value=7.8e-11 Score=94.42 Aligned_cols=53 Identities=25% Similarity=0.539 Sum_probs=44.5
Q ss_pred CCcccccccccccCCCCceeEcCCCCcccHhhHHHHHhcCC-CCCCccccCCCCCch
Q 023542 204 GADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRN-TCPCCRFRLPTDDVF 259 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~~-tCPlCR~~l~~~~~~ 259 (281)
.++..|+||++.+.++ ..++|||.||..||.+|++... +||+||..+...+..
T Consensus 16 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 69 (118)
T 3hct_A 16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLF 69 (118)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCE
T ss_pred CCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcc
Confidence 4578899999999755 3579999999999999998765 999999999776533
No 50
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.97 E-value=3.4e-10 Score=85.43 Aligned_cols=54 Identities=20% Similarity=0.427 Sum_probs=42.4
Q ss_pred CCcccccccccccCCCCceeEc--CCCCcccHhhHHHHHhc-CCCCCCccccCCCCCc
Q 023542 204 GADQCCVICKEEMGGGRDVCEL--PCKHLFHWLCILPWLKK-RNTCPCCRFRLPTDDV 258 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~L--PC~H~FH~~CI~~WL~~-~~tCPlCR~~l~~~~~ 258 (281)
.++..|+||++.+...+ ...+ +|||.||..|+.+|++. +..||+||..+.....
T Consensus 9 ~~~~~CpICle~~~~~d-~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDD-INFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCBCTTTCCBCCTTT-TTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccCCcCCccCccCcccc-ccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 45788999999986433 2234 49999999999999854 5689999999976554
No 51
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.97 E-value=1.9e-10 Score=83.22 Aligned_cols=48 Identities=29% Similarity=0.601 Sum_probs=40.5
Q ss_pred CCcccccccccccCCCCceeEc--CCCCc-ccHhhHHHHHhcCCCCCCccccCC
Q 023542 204 GADQCCVICKEEMGGGRDVCEL--PCKHL-FHWLCILPWLKKRNTCPCCRFRLP 254 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~L--PC~H~-FH~~CI~~WL~~~~tCPlCR~~l~ 254 (281)
.++.+|.||++.+.+ ...+ ||||. ||..|+.+|.+.+..||+||+++.
T Consensus 6 ~~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKN---GCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSC---EEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCC---EEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 346789999998754 2344 99999 899999999999999999999884
No 52
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.93 E-value=2.3e-10 Score=91.50 Aligned_cols=47 Identities=23% Similarity=0.456 Sum_probs=40.7
Q ss_pred cccccccccccCCCCceeEc-CCCCcccHhhHHHHHhcCCCCCCccccCCCCC
Q 023542 206 DQCCVICKEEMGGGRDVCEL-PCKHLFHWLCILPWLKKRNTCPCCRFRLPTDD 257 (281)
Q Consensus 206 ~~~CaICLeef~~~~~vr~L-PC~H~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 257 (281)
...|+||++.|.++. .+ +|||.||..||..|+. ..||+||..+...+
T Consensus 22 ~~~C~IC~~~~~~pv---~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~ 69 (117)
T 1jm7_B 22 LLRCSRCTNILREPV---CLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQD 69 (117)
T ss_dssp TTSCSSSCSCCSSCB---CCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSS
T ss_pred CCCCCCCChHhhCcc---EeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcccc
Confidence 678999999997654 56 8999999999999998 88999999986544
No 53
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.92 E-value=6.5e-10 Score=99.29 Aligned_cols=66 Identities=15% Similarity=0.038 Sum_probs=50.9
Q ss_pred CCcccccccccccCCCCceeEcCCCCcccHhhHHHHHhcC-CCCCCccccCCCCCchhHHHHHHHHHHHhc
Q 023542 204 GADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKR-NTCPCCRFRLPTDDVFGEIERLWDALVKTS 273 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~-~tCPlCR~~l~~~~~~~e~~rl~~~l~~~~ 273 (281)
.+...|+||++.|.++. .+||||+||+.||.+|+..+ .+||+||.++...+ ...+..+.+.++.+.
T Consensus 206 ~~~~~c~i~~~~~~dPv---~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~-l~~n~~l~~~i~~~~ 272 (281)
T 2c2l_A 206 PDYLCGKISFELMREPC---ITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ-LIPNLAMKEVIDAFI 272 (281)
T ss_dssp CSTTBCTTTCSBCSSEE---ECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG-CEECHHHHHHHHHHH
T ss_pred CcccCCcCcCCHhcCCe---ECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhc-CcccHHHHHHHHHHH
Confidence 35788999999998665 78999999999999999864 45999999996554 334445555555543
No 54
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.92 E-value=3e-10 Score=79.82 Aligned_cols=48 Identities=25% Similarity=0.436 Sum_probs=40.0
Q ss_pred CCcccccccccccCCCCceeEcCCCCcccHhhHHHHHhcCCCCCCccccCCCCC
Q 023542 204 GADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPTDD 257 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 257 (281)
.+...|+||++.|.++. .+||+|.||..|+..| ...||+||..+...+
T Consensus 4 ~~~~~C~IC~~~~~~p~---~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPK---LLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSCBCCS---CSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCccCCeE---EcCCCCcccHHHHccC---CCCCCcCCcEeecCC
Confidence 45678999999998654 7899999999999884 678999999986543
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.90 E-value=3e-10 Score=94.47 Aligned_cols=49 Identities=18% Similarity=0.426 Sum_probs=41.7
Q ss_pred CCcccccccccccCCCCceeEcCCCCcccHhhHHHHHhcCC-CCCCccccCCC
Q 023542 204 GADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRN-TCPCCRFRLPT 255 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~~-tCPlCR~~l~~ 255 (281)
.++..|+||++.+.++. .++|||.||..||.+|++... +||+||.++..
T Consensus 29 ~~~~~C~IC~~~~~~pv---~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPF---QAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CGGGBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CcCcCCCCCChhhcCcE---ECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 45788999999997653 579999999999999998665 89999998643
No 56
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.90 E-value=7.6e-10 Score=85.72 Aligned_cols=64 Identities=27% Similarity=0.422 Sum_probs=46.0
Q ss_pred CCcccccccccccCCCCceeEcC-CCCcccHhhHHHHHhcC------CCCCC--cccc-CCCCCchhHHHHHHHHHHH
Q 023542 204 GADQCCVICKEEMGGGRDVCELP-CKHLFHWLCILPWLKKR------NTCPC--CRFR-LPTDDVFGEIERLWDALVK 271 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~LP-C~H~FH~~CI~~WL~~~------~tCPl--CR~~-l~~~~~~~e~~rl~~~l~~ 271 (281)
.+...|+||++.|.++. .++ |||.|++.||.+|+..+ .+||+ |+.. +...+. .....+.+.++.
T Consensus 5 ~~~~~CPI~~~~~~dPV---~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L-~pn~~L~~~I~~ 78 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPV---KNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDL-IQDEALRRAIEN 78 (94)
T ss_dssp SSCCBCTTTCSBCSSEE---EESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGE-EECHHHHHHHHH
T ss_pred CcEeECcCcCchhcCCE---EcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhC-cCCHHHHHHHHH
Confidence 34678999999998655 665 99999999999999864 48999 9876 554442 233334444433
No 57
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.87 E-value=9.4e-10 Score=105.66 Aligned_cols=49 Identities=33% Similarity=0.713 Sum_probs=42.0
Q ss_pred cccccccccccCCCCceeEcCCCCcccHhhHHHHHh-cCCCCCCccccCCCCC
Q 023542 206 DQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLK-KRNTCPCCRFRLPTDD 257 (281)
Q Consensus 206 ~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~-~~~tCPlCR~~l~~~~ 257 (281)
..+|+||++.+.+ ...+||||.||..|+..|+. .+.+||+||..+....
T Consensus 332 ~~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 4689999999854 45789999999999999998 6889999999986543
No 58
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.85 E-value=7.4e-10 Score=79.87 Aligned_cols=49 Identities=20% Similarity=0.462 Sum_probs=39.7
Q ss_pred CcccccccccccCCCCceeEcCCCCc-ccHhhHHHHHhcCCCCCCccccCC
Q 023542 205 ADQCCVICKEEMGGGRDVCELPCKHL-FHWLCILPWLKKRNTCPCCRFRLP 254 (281)
Q Consensus 205 ~~~~CaICLeef~~~~~vr~LPC~H~-FH~~CI~~WL~~~~tCPlCR~~l~ 254 (281)
.+.+|.||++...+.. +..+||||. ||..|+.+|.+++..||+||+++.
T Consensus 6 ~~~~C~IC~~~~~~~~-~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGN-IIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEE-EEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeE-EEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 3678999999765322 122399998 999999999998899999999884
No 59
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=5.6e-09 Score=77.27 Aligned_cols=44 Identities=25% Similarity=0.529 Sum_probs=36.4
Q ss_pred cccccccccccCCCCceeEcCCCCc-ccHhhHHHHHhcCCCCCCccccCCCC
Q 023542 206 DQCCVICKEEMGGGRDVCELPCKHL-FHWLCILPWLKKRNTCPCCRFRLPTD 256 (281)
Q Consensus 206 ~~~CaICLeef~~~~~vr~LPC~H~-FH~~CI~~WL~~~~tCPlCR~~l~~~ 256 (281)
+.+|+||++.+.+. ..+||||. ||..|+.+ ...||+||..+...
T Consensus 25 ~~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIAI---VFVPCGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCCB---CCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCCE---EEecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 56799999988653 36899999 99999964 47899999998653
No 60
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.78 E-value=9.7e-10 Score=81.41 Aligned_cols=43 Identities=26% Similarity=0.591 Sum_probs=37.0
Q ss_pred cccccccccccCCCCceeEcCCCCc-ccHhhHHHHHhcCCCCCCccccCCC
Q 023542 206 DQCCVICKEEMGGGRDVCELPCKHL-FHWLCILPWLKKRNTCPCCRFRLPT 255 (281)
Q Consensus 206 ~~~CaICLeef~~~~~vr~LPC~H~-FH~~CI~~WL~~~~tCPlCR~~l~~ 255 (281)
+..|+||++.+.+ ...+||||. ||..|+..| .+||+||..+..
T Consensus 24 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 5689999998754 447799999 999999999 899999998853
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.76 E-value=2.7e-09 Score=90.24 Aligned_cols=53 Identities=25% Similarity=0.531 Sum_probs=44.3
Q ss_pred CCcccccccccccCCCCceeEcCCCCcccHhhHHHHHhcC-CCCCCccccCCCCCch
Q 023542 204 GADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKR-NTCPCCRFRLPTDDVF 259 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~-~tCPlCR~~l~~~~~~ 259 (281)
.++..|+||++.|.++. .++|||.||..||.+|++.. .+||+||..+..++..
T Consensus 16 ~~~~~C~IC~~~~~~pv---~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 69 (170)
T 3hcs_A 16 ESKYECPICLMALREAV---QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLF 69 (170)
T ss_dssp CGGGBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCE
T ss_pred CCCCCCCCCChhhcCcE---ECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhh
Confidence 45788999999997653 57999999999999999864 4999999999776543
No 62
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.71 E-value=4.9e-09 Score=80.63 Aligned_cols=54 Identities=20% Similarity=0.504 Sum_probs=42.4
Q ss_pred CCcccccccccccCCCCceeEcCCCCcccHhhHHHHHhc--------CCCCCC--cccc--CCCCC
Q 023542 204 GADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKK--------RNTCPC--CRFR--LPTDD 257 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~--------~~tCPl--CR~~--l~~~~ 257 (281)
.+..+|+||++++..++.....+|+|.||..|+..+++. .-.||. ||.. +..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~ 68 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENE 68 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHH
Confidence 346789999999976655544589999999999999963 137999 9998 65544
No 63
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.70 E-value=6.5e-09 Score=90.21 Aligned_cols=64 Identities=17% Similarity=0.062 Sum_probs=49.3
Q ss_pred CCcccccccccccCCCCceeEcCCCCcccHhhHHHHHhcC-CCCCCccccCCCCCchhHHHHHHHHHHH
Q 023542 204 GADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKR-NTCPCCRFRLPTDDVFGEIERLWDALVK 271 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~-~tCPlCR~~l~~~~~~~e~~rl~~~l~~ 271 (281)
.+...|+||++.|.++. .+||||.|++.||.+|+..+ .+||+||.++...+. ..+..+.+.++.
T Consensus 104 p~~f~CPI~~elm~DPV---~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L-~pN~~Lk~~Ie~ 168 (179)
T 2f42_A 104 PDYLCGKISFELMREPC---ITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQL-IPNLAMKEVIDA 168 (179)
T ss_dssp CGGGBCTTTCSBCSSEE---ECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC-EECHHHHHHHHH
T ss_pred cHhhcccCccccCCCCe---ECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhC-cchHHHHHHHHH
Confidence 45788999999998655 67999999999999999864 479999999876543 333445555544
No 64
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.62 E-value=4.6e-09 Score=99.46 Aligned_cols=52 Identities=29% Similarity=0.666 Sum_probs=40.4
Q ss_pred CCcccccccccccCCCC----ceeE-cCCCCcccHhhHHHHHhcC-----------CCCCCccccCCC
Q 023542 204 GADQCCVICKEEMGGGR----DVCE-LPCKHLFHWLCILPWLKKR-----------NTCPCCRFRLPT 255 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~----~vr~-LPC~H~FH~~CI~~WL~~~-----------~tCPlCR~~l~~ 255 (281)
.+..+|+||++.+.++. +.+. .+|+|.||..|+.+|+++. .+||.||.++..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 35678999999997722 2232 3699999999999999752 479999998853
No 65
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.57 E-value=4.4e-08 Score=70.37 Aligned_cols=48 Identities=27% Similarity=0.619 Sum_probs=37.6
Q ss_pred CCcccccccccccCCCCceeEcCCC--C---cccHhhHHHHHhc--CCCCCCccccCC
Q 023542 204 GADQCCVICKEEMGGGRDVCELPCK--H---LFHWLCILPWLKK--RNTCPCCRFRLP 254 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~LPC~--H---~FH~~CI~~WL~~--~~tCPlCR~~l~ 254 (281)
++...|.||+++.. +.+ ..||. + .||..|+.+|+.. +.+||+||+.+.
T Consensus 4 ~~~~~CrIC~~~~~--~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELG--NER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECS--CCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCC--Cce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 45678999999842 333 57855 4 8999999999974 678999999875
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=4.5e-08 Score=71.66 Aligned_cols=46 Identities=26% Similarity=0.582 Sum_probs=37.8
Q ss_pred CCCcccccccccccCCCCceeEcCCCCc-ccHhhHHHHHhcCCCCCCccccCCC
Q 023542 203 AGADQCCVICKEEMGGGRDVCELPCKHL-FHWLCILPWLKKRNTCPCCRFRLPT 255 (281)
Q Consensus 203 ~~~~~~CaICLeef~~~~~vr~LPC~H~-FH~~CI~~WL~~~~tCPlCR~~l~~ 255 (281)
..++..|.||++... .+..+||+|. ||..|+.. ...||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTV---NWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCC---CCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCC---CEEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 345778999999764 4558899999 99999984 5799999998854
No 67
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.48 E-value=3.4e-08 Score=71.09 Aligned_cols=50 Identities=12% Similarity=0.166 Sum_probs=42.7
Q ss_pred cccccccccccCCCCceeEc-CCCCcccHhhHHHHHhcCCCCCCccccCCCCCc
Q 023542 206 DQCCVICKEEMGGGRDVCEL-PCKHLFHWLCILPWLKKRNTCPCCRFRLPTDDV 258 (281)
Q Consensus 206 ~~~CaICLeef~~~~~vr~L-PC~H~FH~~CI~~WL~~~~tCPlCR~~l~~~~~ 258 (281)
...|+||++.|+++. .. +|||.|.+.||.+|++++.+||+++.++..++.
T Consensus 3 ~~~CpIs~~~m~dPV---~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~L 53 (61)
T 2bay_A 3 HMLCAISGKVPRRPV---LSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI 53 (61)
T ss_dssp -CCCTTTCSCCSSEE---EETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred eEEecCCCCCCCCCE---EeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhc
Confidence 457999999998653 55 799999999999999988899999999876653
No 68
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.47 E-value=2.5e-08 Score=75.01 Aligned_cols=43 Identities=30% Similarity=0.631 Sum_probs=36.0
Q ss_pred cccccccccccCCCCceeEcCCCCc-ccHhhHHHHHhcCCCCCCccccCCC
Q 023542 206 DQCCVICKEEMGGGRDVCELPCKHL-FHWLCILPWLKKRNTCPCCRFRLPT 255 (281)
Q Consensus 206 ~~~CaICLeef~~~~~vr~LPC~H~-FH~~CI~~WL~~~~tCPlCR~~l~~ 255 (281)
+..|.||++.+. ....+||||. ||..|+..| ..||+||..+..
T Consensus 18 ~~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEI---NSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBC---CEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCEeEEeCcccC---cEEEECCCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 567999999864 4557899999 999999987 499999998843
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.40 E-value=1.7e-07 Score=85.77 Aligned_cols=52 Identities=21% Similarity=0.383 Sum_probs=42.7
Q ss_pred CCcccccccccccCCCCceeEcCCCCcccHhhHHHHHhcC--CCCCC--ccccCCCCC
Q 023542 204 GADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKR--NTCPC--CRFRLPTDD 257 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~--~tCPl--CR~~l~~~~ 257 (281)
..+..|+||++.|.++. ....|||.||+.||..|++.+ .+||+ ||..+...+
T Consensus 179 ~~el~CPIcl~~f~DPV--ts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~d 234 (267)
T 3htk_C 179 KIELTCPITCKPYEAPL--ISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRD 234 (267)
T ss_dssp BCCSBCTTTSSBCSSEE--EESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGG
T ss_pred ceeeECcCccCcccCCe--eeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhh
Confidence 34778999999997544 445899999999999999864 47999 999886655
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.31 E-value=1e-07 Score=90.21 Aligned_cols=44 Identities=27% Similarity=0.648 Sum_probs=37.4
Q ss_pred CcccccccccccCCCCceeEcCCCCc-ccHhhHHHHHhcCCCCCCccccCCC
Q 023542 205 ADQCCVICKEEMGGGRDVCELPCKHL-FHWLCILPWLKKRNTCPCCRFRLPT 255 (281)
Q Consensus 205 ~~~~CaICLeef~~~~~vr~LPC~H~-FH~~CI~~WL~~~~tCPlCR~~l~~ 255 (281)
++..|+||++.+.+ ...+||||. ||..|+..| ..||+||..+..
T Consensus 294 ~~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCc---eEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 36789999998854 447799999 999999998 789999998853
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.09 E-value=2e-06 Score=67.91 Aligned_cols=45 Identities=27% Similarity=0.555 Sum_probs=37.8
Q ss_pred cccccccccCCCCceeEcCCCCcccHhhHHHHHh-cCCCCCCccccCC
Q 023542 208 CCVICKEEMGGGRDVCELPCKHLFHWLCILPWLK-KRNTCPCCRFRLP 254 (281)
Q Consensus 208 ~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~-~~~tCPlCR~~l~ 254 (281)
-|.+|--.+. ...|.+||+|.||.+|+..|.+ +.++||+|+.++.
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 3788877765 5778889999999999999985 4679999999883
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.93 E-value=5.3e-06 Score=74.66 Aligned_cols=52 Identities=23% Similarity=0.549 Sum_probs=42.1
Q ss_pred CCcccccccccccCCCCceeEcCCCCcccHhhHHHHHhcCC--CCCCccccCCCCC
Q 023542 204 GADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRN--TCPCCRFRLPTDD 257 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~~--tCPlCR~~l~~~~ 257 (281)
++-.+|.||.+-...|.... .|+|.||..|+.+|++++. .||.|+..++.+.
T Consensus 178 ~~i~~C~iC~~iv~~g~~C~--~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~ 231 (238)
T 3nw0_A 178 DAVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 231 (238)
T ss_dssp TTCCBCTTTCSBCSSCEECS--SSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCC
T ss_pred CCCCcCcchhhHHhCCcccC--ccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence 34678999999988665322 2999999999999998754 8999999997654
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.23 E-value=0.012 Score=44.86 Aligned_cols=35 Identities=11% Similarity=0.275 Sum_probs=26.8
Q ss_pred CcccccccccccCCCCceeEcCCCCcccHhhHHHH
Q 023542 205 ADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPW 239 (281)
Q Consensus 205 ~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~W 239 (281)
++..|.||.+++..+....-++|+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 46789999987543333334789999999999984
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.30 E-value=0.016 Score=45.09 Aligned_cols=50 Identities=30% Similarity=0.537 Sum_probs=40.1
Q ss_pred CcccccccccccCCCCceeEcCC-CCcccHhhHHHHHhcCCCCCCccccCCCCCch
Q 023542 205 ADQCCVICKEEMGGGRDVCELPC-KHLFHWLCILPWLKKRNTCPCCRFRLPTDDVF 259 (281)
Q Consensus 205 ~~~~CaICLeef~~~~~vr~LPC-~H~FH~~CI~~WL~~~~tCPlCR~~l~~~~~~ 259 (281)
+...|..|..+.+ . .+.| .|-+|..|+...|.....||+|+.+++++-..
T Consensus 27 G~~nCKsCWf~~k--~---LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 27 GPQFCKSCWFENK--G---LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CCCCCCSSCSCCS--S---EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred CcccChhhccccC--C---eeeecchhhHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 4677999988753 2 3345 59999999999999999999999999776543
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.30 E-value=0.13 Score=37.05 Aligned_cols=45 Identities=27% Similarity=0.645 Sum_probs=32.7
Q ss_pred CcccccccccccCCCCceeEc-CCCCcccHhhHHHHHhcCC----CCCCccccC
Q 023542 205 ADQCCVICKEEMGGGRDVCEL-PCKHLFHWLCILPWLKKRN----TCPCCRFRL 253 (281)
Q Consensus 205 ~~~~CaICLeef~~~~~vr~L-PC~H~FH~~CI~~WL~~~~----tCPlCR~~l 253 (281)
.+..|.||.+. ++ +..- -|...||..|+++.+.... .||.|+...
T Consensus 11 ~~~~C~vC~~~---~~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG---TD-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC---TT-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC---Ce-EEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 35679999753 33 3333 5999999999998886532 799997654
No 76
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=92.13 E-value=0.084 Score=45.52 Aligned_cols=50 Identities=22% Similarity=0.414 Sum_probs=35.2
Q ss_pred cccccccccccCCCCc---eeEc-CCCCcccHhhHHHH------Hh-----cCCCCCCccccCCC
Q 023542 206 DQCCVICKEEMGGGRD---VCEL-PCKHLFHWLCILPW------LK-----KRNTCPCCRFRLPT 255 (281)
Q Consensus 206 ~~~CaICLeef~~~~~---vr~L-PC~H~FH~~CI~~W------L~-----~~~tCPlCR~~l~~ 255 (281)
+..|+||...|.+++. .... -|...||..|..-- +. ..-.||.|+..-..
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 4569999999977652 4344 49999999998531 11 15689999876543
No 77
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=91.22 E-value=0.25 Score=37.74 Aligned_cols=31 Identities=26% Similarity=0.640 Sum_probs=23.3
Q ss_pred CcccccccccccCCCCceeEcC---CCCcccHhhHHHH
Q 023542 205 ADQCCVICKEEMGGGRDVCELP---CKHLFHWLCILPW 239 (281)
Q Consensus 205 ~~~~CaICLeef~~~~~vr~LP---C~H~FH~~CI~~W 239 (281)
.|..|.||- .|..++ .+| |+-+||..|+.+-
T Consensus 14 ~D~~C~VC~-~~t~~~---l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCE-VWTAES---LFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTC-CCCSSC---CSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCccc-cccccc---eeccccccccccHhhcccc
Confidence 478899995 344434 334 8899999999996
No 78
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=90.68 E-value=0.18 Score=53.28 Aligned_cols=64 Identities=20% Similarity=0.109 Sum_probs=49.6
Q ss_pred CCcccccccccccCCCCceeEcCCC-CcccHhhHHHHHhcCCCCCCccccCCCCCchhHHHHHHHHHHH
Q 023542 204 GADQCCVICKEEMGGGRDVCELPCK-HLFHWLCILPWLKKRNTCPCCRFRLPTDDVFGEIERLWDALVK 271 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~LPC~-H~FH~~CI~~WL~~~~tCPlCR~~l~~~~~~~e~~rl~~~l~~ 271 (281)
.+...|+|-.+-|.++. .+|-| +.|=+.+|.+|+.++.+||+=|.++...+.. .+..+.+.++.
T Consensus 889 P~~F~cPIs~~lM~DPV---ilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~li-PN~~Lk~~I~~ 953 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDPV---ILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVT-PNEELRQKILC 953 (968)
T ss_dssp CGGGBCTTTCSBCSSEE---ECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCE-ECHHHHHHHHH
T ss_pred cHHhCCcchhhHHhCCe---EcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCccccc-ccHHHHHHHHH
Confidence 34778999999998766 78987 6899999999999999999999999766533 23344444433
No 79
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=89.86 E-value=0.081 Score=37.36 Aligned_cols=49 Identities=24% Similarity=0.460 Sum_probs=34.4
Q ss_pred CCcccccccccccCCCCceeEc-CCCCcccHhhHHHHHh-----cCCCCCCcccc
Q 023542 204 GADQCCVICKEEMGGGRDVCEL-PCKHLFHWLCILPWLK-----KRNTCPCCRFR 252 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~L-PC~H~FH~~CI~~WL~-----~~~tCPlCR~~ 252 (281)
.++..|+||...+.++.....- .|...||..|+.---. ....||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 4567799999988654433333 5999999999875432 24479999754
No 80
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=88.21 E-value=0.42 Score=36.79 Aligned_cols=47 Identities=23% Similarity=0.371 Sum_probs=31.1
Q ss_pred CcccccccccccCCCCceeEcCCCCcccHhhHHHHHhc---CCCCCCcccc
Q 023542 205 ADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKK---RNTCPCCRFR 252 (281)
Q Consensus 205 ~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~---~~tCPlCR~~ 252 (281)
+...| ||......+..+.--.|.-.||..|+..-... .-.||.|+..
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 34567 89877655443332259999999998764332 3379999743
No 81
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=84.51 E-value=0.18 Score=39.43 Aligned_cols=48 Identities=21% Similarity=0.336 Sum_probs=33.3
Q ss_pred cccccccccccCCCCceeEc--CCCCcccHhhHHHHHh----------cCCCCCCccccC
Q 023542 206 DQCCVICKEEMGGGRDVCEL--PCKHLFHWLCILPWLK----------KRNTCPCCRFRL 253 (281)
Q Consensus 206 ~~~CaICLeef~~~~~vr~L--PC~H~FH~~CI~~WL~----------~~~tCPlCR~~l 253 (281)
...|.||...+.+....... .|...||..|+.---. ..-.||.|+..-
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 45699999998665444343 4899999999853211 234799997655
No 82
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=84.03 E-value=0.48 Score=33.34 Aligned_cols=45 Identities=24% Similarity=0.752 Sum_probs=31.3
Q ss_pred CCcccccccccccCCCCceeEc-CCCCcccHhhHHHHHhc----CCCCCCcccc
Q 023542 204 GADQCCVICKEEMGGGRDVCEL-PCKHLFHWLCILPWLKK----RNTCPCCRFR 252 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~L-PC~H~FH~~CI~~WL~~----~~tCPlCR~~ 252 (281)
..+..|.||.+. ++ +..- .|.-.||..|+..-+.. .-.||.|+..
T Consensus 9 ~~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GE-IILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC---SS-EEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC---Cc-EEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 346779999863 33 3333 59999999999986543 2279999653
No 83
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=83.60 E-value=0.3 Score=35.45 Aligned_cols=49 Identities=20% Similarity=0.508 Sum_probs=33.6
Q ss_pred CcccccccccccCCCCceeEc-CCCCcccHhhHHHHHhc----CCCCCCccccCC
Q 023542 205 ADQCCVICKEEMGGGRDVCEL-PCKHLFHWLCILPWLKK----RNTCPCCRFRLP 254 (281)
Q Consensus 205 ~~~~CaICLeef~~~~~vr~L-PC~H~FH~~CI~~WL~~----~~tCPlCR~~l~ 254 (281)
+...|.||.... +++....- .|.-.||..|+..-... .-.||.|+..+.
T Consensus 17 ~~~~C~~C~~~~-~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPD-DGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCC-SSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCC-CCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 355699998765 34333333 49999999999865542 337999977653
No 84
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=83.58 E-value=0.84 Score=33.53 Aligned_cols=49 Identities=20% Similarity=0.407 Sum_probs=32.4
Q ss_pred CCcccccccccccCCCCceeEc-CCCCcccHhhHHHHHh-----cCCCCCCccccC
Q 023542 204 GADQCCVICKEEMGGGRDVCEL-PCKHLFHWLCILPWLK-----KRNTCPCCRFRL 253 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~L-PC~H~FH~~CI~~WL~-----~~~tCPlCR~~l 253 (281)
.+...| ||...+.++.....- -|...||..|+.---. ....||.|+...
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 345567 999887533433333 5999999999863222 244799998654
No 85
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=82.95 E-value=0.57 Score=31.39 Aligned_cols=43 Identities=26% Similarity=0.679 Sum_probs=28.6
Q ss_pred cccccccccCCCCceeEc-CCCCcccHhhHHHHHhcC----CCCCCccc
Q 023542 208 CCVICKEEMGGGRDVCEL-PCKHLFHWLCILPWLKKR----NTCPCCRF 251 (281)
Q Consensus 208 ~CaICLeef~~~~~vr~L-PC~H~FH~~CI~~WL~~~----~tCPlCR~ 251 (281)
.|.||.+.-.. ..+..- .|...||..|+++=+... -.||.|+.
T Consensus 2 ~C~vC~~~~~~-~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCC-CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 48899875322 233333 599999999998655432 26999965
No 86
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=81.29 E-value=3.6 Score=33.93 Aligned_cols=45 Identities=33% Similarity=0.599 Sum_probs=31.5
Q ss_pred CCCcccccccccccCCCCceeEc-CCCCcccHhhHHHHHh---------c--CCCCCCccc
Q 023542 203 AGADQCCVICKEEMGGGRDVCEL-PCKHLFHWLCILPWLK---------K--RNTCPCCRF 251 (281)
Q Consensus 203 ~~~~~~CaICLeef~~~~~vr~L-PC~H~FH~~CI~~WL~---------~--~~tCPlCR~ 251 (281)
++.+..|.||.+ .|+ +... .|--.||..|+++-+. . .=.||+|+.
T Consensus 60 Dg~~d~C~vC~~---GG~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAE---GGN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCC---CSS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCC---CCc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 344677999976 334 3333 5999999999998763 1 227999974
No 87
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=80.64 E-value=0.45 Score=33.46 Aligned_cols=48 Identities=27% Similarity=0.587 Sum_probs=31.9
Q ss_pred CCcccccccccccCCCCceeEcCCCCcccHhhHHHHHhcC----CCCCCccccCC
Q 023542 204 GADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKR----NTCPCCRFRLP 254 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~----~tCPlCR~~l~ 254 (281)
..+..|.||.+. ++.+.--.|...||..|+.+-+... -.||.|+....
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 346679999762 3322222499999999998755432 26999976543
No 88
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=79.94 E-value=0.65 Score=33.78 Aligned_cols=50 Identities=22% Similarity=0.450 Sum_probs=32.2
Q ss_pred CCCcccccccccccCCCCceeEcCCCCcccHhhHHHHH---------hcCCCCCCccccC
Q 023542 203 AGADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWL---------KKRNTCPCCRFRL 253 (281)
Q Consensus 203 ~~~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL---------~~~~tCPlCR~~l 253 (281)
+.+...| ||...+..+..+.--.|...||..|+.--- .....||.|+..-
T Consensus 13 d~~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 13 DPNALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CTTCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCCCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 3345567 898877533333222599999999985321 2456899997643
No 89
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=79.69 E-value=0.56 Score=39.62 Aligned_cols=46 Identities=28% Similarity=0.684 Sum_probs=32.1
Q ss_pred CcccccccccccCCCCceeEcCCCCcccHhhHHHHHhcC----CCCCCccccC
Q 023542 205 ADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKR----NTCPCCRFRL 253 (281)
Q Consensus 205 ~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~----~tCPlCR~~l 253 (281)
++..|.||.+. |+-+.--.|.-.||..|+.+-+... -.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 45669999753 4422222499999999998876542 3799998754
No 90
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=77.79 E-value=0.49 Score=39.47 Aligned_cols=48 Identities=21% Similarity=0.481 Sum_probs=31.8
Q ss_pred CCcccccccccccCCCCceeEc-CCCCcccHhhHHHHHh-----cCCCCCCcccc
Q 023542 204 GADQCCVICKEEMGGGRDVCEL-PCKHLFHWLCILPWLK-----KRNTCPCCRFR 252 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~L-PC~H~FH~~CI~~WL~-----~~~tCPlCR~~ 252 (281)
.++..| +|.....++...... .|...||..|+.---. ..-.||.|+..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 346678 999886544433333 5999999999953221 24479999764
No 91
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=76.72 E-value=0.37 Score=34.03 Aligned_cols=51 Identities=27% Similarity=0.655 Sum_probs=33.8
Q ss_pred CCcccccccccccCC-CCceeEc-CCCCcccHhhHHHHHh-------cCCCCCCccccCC
Q 023542 204 GADQCCVICKEEMGG-GRDVCEL-PCKHLFHWLCILPWLK-------KRNTCPCCRFRLP 254 (281)
Q Consensus 204 ~~~~~CaICLeef~~-~~~vr~L-PC~H~FH~~CI~~WL~-------~~~tCPlCR~~l~ 254 (281)
.++..|.||...... +..+..- .|.-.||..|+.+-+. ..-.||.|+....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 456789999976432 2333333 4999999999886442 2237999976543
No 92
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.45 E-value=0.26 Score=34.00 Aligned_cols=45 Identities=29% Similarity=0.706 Sum_probs=30.1
Q ss_pred CCcccccccccccCCCCceeEcCCCCcccHhhHHHHHhcC----CCCCCccc
Q 023542 204 GADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKR----NTCPCCRF 251 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~----~tCPlCR~ 251 (281)
.++..|.||.+. ++.+.--.|...||..|+.+-+... -.||.|+.
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 446779999873 3322222599999999998755432 25888854
No 93
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=75.87 E-value=0.99 Score=34.44 Aligned_cols=49 Identities=27% Similarity=0.548 Sum_probs=33.4
Q ss_pred CCCcccccccccccCCCCceeEcCCCCcccHhhHHHHHhcC----CCCCCccccCC
Q 023542 203 AGADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKR----NTCPCCRFRLP 254 (281)
Q Consensus 203 ~~~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~----~tCPlCR~~l~ 254 (281)
...+..|.||.+. ++-+.--.|.-.||..|+++=+... -.||.|+..-.
T Consensus 22 d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~ 74 (88)
T 1fp0_A 22 DDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 74 (88)
T ss_dssp SSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCS
T ss_pred CCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCc
Confidence 3456789999863 3322222499999999998866542 27999986543
No 94
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=75.58 E-value=0.54 Score=40.55 Aligned_cols=46 Identities=26% Similarity=0.579 Sum_probs=32.1
Q ss_pred CCcccccccccccCCCCceeEc-CCCCcccHhhHHHHHhcC----CCCCCccccC
Q 023542 204 GADQCCVICKEEMGGGRDVCEL-PCKHLFHWLCILPWLKKR----NTCPCCRFRL 253 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~L-PC~H~FH~~CI~~WL~~~----~tCPlCR~~l 253 (281)
..+..|.+|.+. |+ +... .|...||..|+.+.+... -.||.|+..-
T Consensus 5 ~~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNG---GD-LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCC---EE-EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC---Cc-eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 345679999753 33 3333 499999999998877542 3799997654
No 95
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=75.45 E-value=1 Score=30.45 Aligned_cols=43 Identities=19% Similarity=0.386 Sum_probs=28.9
Q ss_pred cccccccccCCCCceeEc--CCCCcccHhhHHHHH----hcCCCCCCcc
Q 023542 208 CCVICKEEMGGGRDVCEL--PCKHLFHWLCILPWL----KKRNTCPCCR 250 (281)
Q Consensus 208 ~CaICLeef~~~~~vr~L--PC~H~FH~~CI~~WL----~~~~tCPlCR 250 (281)
.|.+|...+.++.....- .|...||..|+.--- .....||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 588998888655433333 488899999976322 2456899885
No 96
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=72.94 E-value=1.1 Score=34.77 Aligned_cols=47 Identities=17% Similarity=0.428 Sum_probs=30.2
Q ss_pred CCcccccccccccCCCCceeEcCCCCcccHhhHHHHHhc----CCCCCCcc
Q 023542 204 GADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKK----RNTCPCCR 250 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~----~~tCPlCR 250 (281)
.++..|.||.+.-+..+.+.--.|...||..|+...... .-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 456789999875322121322359999999999887652 22566654
No 97
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=72.32 E-value=2.8 Score=29.88 Aligned_cols=34 Identities=26% Similarity=0.546 Sum_probs=24.5
Q ss_pred CcccccccccccCCCCceeEc--CCCCcccHhhHHH
Q 023542 205 ADQCCVICKEEMGGGRDVCEL--PCKHLFHWLCILP 238 (281)
Q Consensus 205 ~~~~CaICLeef~~~~~vr~L--PC~H~FH~~CI~~ 238 (281)
....|.+|...+.+++....- .|.-.||..|+.-
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvgl 42 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGM 42 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTC
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccCC
Confidence 356799999998766544443 5899999999753
No 98
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=71.88 E-value=0.26 Score=34.43 Aligned_cols=46 Identities=26% Similarity=0.674 Sum_probs=31.0
Q ss_pred CcccccccccccCCCCceeEcCCCCcccHhhHHHHHhcC----CCCCCccccC
Q 023542 205 ADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKR----NTCPCCRFRL 253 (281)
Q Consensus 205 ~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~----~tCPlCR~~l 253 (281)
.+..|.||.+. ++.+.--.|.-.||..|+.+-+... -.||.|+...
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 46779999873 3322222599999999998755432 2699996543
No 99
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=70.91 E-value=1.3 Score=32.25 Aligned_cols=49 Identities=27% Similarity=0.468 Sum_probs=31.4
Q ss_pred CCCcccccccccccCCCCceeEc-CCCCcccHhhHHHHHh-----cCCCCCCcccc
Q 023542 203 AGADQCCVICKEEMGGGRDVCEL-PCKHLFHWLCILPWLK-----KRNTCPCCRFR 252 (281)
Q Consensus 203 ~~~~~~CaICLeef~~~~~vr~L-PC~H~FH~~CI~~WL~-----~~~tCPlCR~~ 252 (281)
+.+...| ||...+..+.....- .|.-.||..|+.---. ....||.|+..
T Consensus 7 ~~~~~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 7 ATVPVYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CCCCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred CCCeeEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 3344555 898876543433333 5999999999964322 23579999754
No 100
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=70.13 E-value=1.2 Score=32.67 Aligned_cols=48 Identities=19% Similarity=0.354 Sum_probs=31.8
Q ss_pred CcccccccccccCCCCceeEc--CCCCcccHhhHHHHHh---------cCCCCCCccccC
Q 023542 205 ADQCCVICKEEMGGGRDVCEL--PCKHLFHWLCILPWLK---------KRNTCPCCRFRL 253 (281)
Q Consensus 205 ~~~~CaICLeef~~~~~vr~L--PC~H~FH~~CI~~WL~---------~~~tCPlCR~~l 253 (281)
+...| ||......+..+.-= .|...||..|+.---. ....||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 45668 898875555443333 4999999999864221 245799997654
No 101
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=68.99 E-value=0.78 Score=32.63 Aligned_cols=46 Identities=24% Similarity=0.642 Sum_probs=31.6
Q ss_pred CCcccccccccccCCCCceeEc-CCCCcccHhhHHHHHhc----CCCCCCccccC
Q 023542 204 GADQCCVICKEEMGGGRDVCEL-PCKHLFHWLCILPWLKK----RNTCPCCRFRL 253 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~L-PC~H~FH~~CI~~WL~~----~~tCPlCR~~l 253 (281)
.++..|.||.+. ++ +..- .|.-.||..|+.+-+.. .-.||.|+..-
T Consensus 6 ~~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 6 KNEDECAVCRDG---GE-LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp SCCCSBSSSSCC---SS-CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCCCCCccCCCC---CC-EEEcCCCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence 346779999863 33 3233 49999999999875543 22699996543
No 102
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=68.60 E-value=2.7 Score=32.12 Aligned_cols=45 Identities=24% Similarity=0.583 Sum_probs=28.4
Q ss_pred CcccccccccccCCCCceeEcC--CC-CcccHhhHHHHHhc----CCCCCCccccC
Q 023542 205 ADQCCVICKEEMGGGRDVCELP--CK-HLFHWLCILPWLKK----RNTCPCCRFRL 253 (281)
Q Consensus 205 ~~~~CaICLeef~~~~~vr~LP--C~-H~FH~~CI~~WL~~----~~tCPlCR~~l 253 (281)
+...| ||.+.. .+..+.-=. |. ..||..|+. |.. .-.||.|+..-
T Consensus 35 e~~yC-iC~~~~-~g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVS-YGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBC-CSCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCC-CCCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 34557 998864 344222223 55 689999997 433 33799997654
No 103
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=67.72 E-value=10 Score=29.01 Aligned_cols=50 Identities=24% Similarity=0.455 Sum_probs=36.1
Q ss_pred CcccccccccccCCCC--ceeEc--CCCCcccHhhHHHHHh-cCCCCCCccccCC
Q 023542 205 ADQCCVICKEEMGGGR--DVCEL--PCKHLFHWLCILPWLK-KRNTCPCCRFRLP 254 (281)
Q Consensus 205 ~~~~CaICLeef~~~~--~vr~L--PC~H~FH~~CI~~WL~-~~~tCPlCR~~l~ 254 (281)
....|.||-+++.... ++... .|+-..|+.|..-=.+ .++.||.|+....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 4567999999974322 22222 4888899999887665 4778999998874
No 104
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=67.47 E-value=0.75 Score=33.18 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=31.9
Q ss_pred CcccccccccccCCCCceeEc-CCCCcccHhhHHHHH----hcCCCCCCccccC
Q 023542 205 ADQCCVICKEEMGGGRDVCEL-PCKHLFHWLCILPWL----KKRNTCPCCRFRL 253 (281)
Q Consensus 205 ~~~~CaICLeef~~~~~vr~L-PC~H~FH~~CI~~WL----~~~~tCPlCR~~l 253 (281)
+...| ||.....+++....- .|...||..|+.--- .....||.|+..-
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 35668 798876555433333 599999999986532 1244799997543
No 105
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=67.14 E-value=1.4 Score=37.71 Aligned_cols=45 Identities=29% Similarity=0.612 Sum_probs=30.6
Q ss_pred cccccccccccCCCCceeEcCCCCcccHhhHHHHHhc----CCCCCCccccC
Q 023542 206 DQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKK----RNTCPCCRFRL 253 (281)
Q Consensus 206 ~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~----~~tCPlCR~~l 253 (281)
+..|.+|.+. |+.+.--.|.-.||..|+.+=+.. .-.||.|+..-
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 4569999853 443332358899999999875543 22699997653
No 106
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=66.78 E-value=0.92 Score=32.67 Aligned_cols=46 Identities=24% Similarity=0.476 Sum_probs=30.2
Q ss_pred CCcccccccccccCCCCceeEc-CCCCcccHhhHHHHHh---cCCCCCCccc
Q 023542 204 GADQCCVICKEEMGGGRDVCEL-PCKHLFHWLCILPWLK---KRNTCPCCRF 251 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~L-PC~H~FH~~CI~~WL~---~~~tCPlCR~ 251 (281)
.+...| ||...+. ++....- .|...||..|+.---. ..-.||.|+.
T Consensus 17 ~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 446678 9988764 3323333 5999999999864322 2347888864
No 107
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=66.46 E-value=1.8 Score=33.77 Aligned_cols=45 Identities=24% Similarity=0.530 Sum_probs=29.7
Q ss_pred ccccccccccCCCCceeEc-CCCCcccHhhHHHHHhcC----CCCCCccc
Q 023542 207 QCCVICKEEMGGGRDVCEL-PCKHLFHWLCILPWLKKR----NTCPCCRF 251 (281)
Q Consensus 207 ~~CaICLeef~~~~~vr~L-PC~H~FH~~CI~~WL~~~----~tCPlCR~ 251 (281)
..|.||.+.-.+++.+..- .|...||..|+++-+... =.||.||.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 3588887643233333333 499999999998766542 27999975
No 108
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=66.37 E-value=3.8 Score=31.03 Aligned_cols=37 Identities=30% Similarity=0.602 Sum_probs=29.1
Q ss_pred CcccccccccccCCCCceeEcC--CCCcccHhhHHHHHhc
Q 023542 205 ADQCCVICKEEMGGGRDVCELP--CKHLFHWLCILPWLKK 242 (281)
Q Consensus 205 ~~~~CaICLeef~~~~~vr~LP--C~H~FH~~CI~~WL~~ 242 (281)
....|.+|.+.+++..-| +.| =.|.||..|-+..+++
T Consensus 14 a~l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccCcee-eCCCccCCeeeccccHHHHHh
Confidence 367799999999875533 334 4799999999999975
No 109
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=65.63 E-value=1.5 Score=33.14 Aligned_cols=54 Identities=17% Similarity=0.222 Sum_probs=34.5
Q ss_pred CCccccccccccc-CCCCceeEc-CCCCcccHhhHHHHHh--cCCCCCCccccCCCCC
Q 023542 204 GADQCCVICKEEM-GGGRDVCEL-PCKHLFHWLCILPWLK--KRNTCPCCRFRLPTDD 257 (281)
Q Consensus 204 ~~~~~CaICLeef-~~~~~vr~L-PC~H~FH~~CI~~WL~--~~~tCPlCR~~l~~~~ 257 (281)
.++..|.||.+.- .++..+... .|.-.||..|+..-.. ..-.||.|......++
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~~ 80 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPA 80 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSCC
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchhh
Confidence 4467899998753 122233333 4999999999986432 1237999977654443
No 110
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=64.18 E-value=4.7 Score=30.28 Aligned_cols=38 Identities=13% Similarity=0.271 Sum_probs=26.4
Q ss_pred CCCcccccccccccCCCCceeEc-CCCCcccHhhHHHHH
Q 023542 203 AGADQCCVICKEEMGGGRDVCEL-PCKHLFHWLCILPWL 240 (281)
Q Consensus 203 ~~~~~~CaICLeef~~~~~vr~L-PC~H~FH~~CI~~WL 240 (281)
+.+...|.+|...|..-..--.. .||.+||..|...+.
T Consensus 17 d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 17 DSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred cccCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 33456799999999653322222 499999999976653
No 111
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=64.15 E-value=3.7 Score=29.69 Aligned_cols=45 Identities=24% Similarity=0.583 Sum_probs=28.3
Q ss_pred CcccccccccccCCCCceeEcC--CC-CcccHhhHHHHHhc----CCCCCCccccC
Q 023542 205 ADQCCVICKEEMGGGRDVCELP--CK-HLFHWLCILPWLKK----RNTCPCCRFRL 253 (281)
Q Consensus 205 ~~~~CaICLeef~~~~~vr~LP--C~-H~FH~~CI~~WL~~----~~tCPlCR~~l 253 (281)
+...| ||.... .+..+.-=. |. ..||..|+. |.. .-.||.|+..-
T Consensus 15 ~~~~C-~C~~~~-~g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVS-YGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCS-CSSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCC-CCCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 35567 898764 344222113 65 689999998 443 23799997654
No 112
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=63.70 E-value=9.9 Score=30.80 Aligned_cols=44 Identities=32% Similarity=0.560 Sum_probs=29.5
Q ss_pred CCcccccccccccCCCCceeEc-CCCCcccHhhHHHHH-----hc------CCCCCCccc
Q 023542 204 GADQCCVICKEEMGGGRDVCEL-PCKHLFHWLCILPWL-----KK------RNTCPCCRF 251 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~L-PC~H~FH~~CI~~WL-----~~------~~tCPlCR~ 251 (281)
+.+..|.||.+- |+ +.-- .|-..||..|+.+-+ .+ .=.|++|+-
T Consensus 55 g~~~~C~vC~dG---G~-LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCC---SE-EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCC---Ce-eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 345669999763 33 3222 489999999999863 11 227999954
No 113
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.26 E-value=0.9 Score=34.59 Aligned_cols=48 Identities=23% Similarity=0.513 Sum_probs=31.6
Q ss_pred CCcccccccccccCCCCceeEc-CCCCcccHhhHHHHHhcC----CCCCCcccc
Q 023542 204 GADQCCVICKEEMGGGRDVCEL-PCKHLFHWLCILPWLKKR----NTCPCCRFR 252 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~L-PC~H~FH~~CI~~WL~~~----~tCPlCR~~ 252 (281)
.++..|.||.+.-. ...+... -|...||..|+.+=+... =.||.|+..
T Consensus 14 ~~~~~C~vC~~~~~-~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDE-DDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGG-GGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCC-CCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 34567999987642 2233333 499999999998655432 269999653
No 114
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=58.03 E-value=8.4 Score=28.42 Aligned_cols=37 Identities=11% Similarity=0.066 Sum_probs=26.2
Q ss_pred CCCcccccccccccCCCCceeEc-CCCCcccHhhHHHH
Q 023542 203 AGADQCCVICKEEMGGGRDVCEL-PCKHLFHWLCILPW 239 (281)
Q Consensus 203 ~~~~~~CaICLeef~~~~~vr~L-PC~H~FH~~CI~~W 239 (281)
+.+...|.+|...|..-..--.- .||.+||..|....
T Consensus 18 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 18 DEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 45567899999999753322222 49999999997654
No 115
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=57.52 E-value=2.4 Score=41.59 Aligned_cols=47 Identities=26% Similarity=0.502 Sum_probs=30.6
Q ss_pred CcccccccccccCCCCceeEc-CCCCcccHhhHHHHHh-----cCCCCCCcccc
Q 023542 205 ADQCCVICKEEMGGGRDVCEL-PCKHLFHWLCILPWLK-----KRNTCPCCRFR 252 (281)
Q Consensus 205 ~~~~CaICLeef~~~~~vr~L-PC~H~FH~~CI~~WL~-----~~~tCPlCR~~ 252 (281)
+...| ||...+..+...... -|.-.||..|+.---. ..-.||.|+..
T Consensus 36 ~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 36 PPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 34556 999877534434344 5999999999854322 13479999743
No 116
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=56.74 E-value=6.9 Score=31.21 Aligned_cols=37 Identities=16% Similarity=0.271 Sum_probs=25.5
Q ss_pred CCCcccccccccccCCCCceeEc-CCCCcccHhhHHHH
Q 023542 203 AGADQCCVICKEEMGGGRDVCEL-PCKHLFHWLCILPW 239 (281)
Q Consensus 203 ~~~~~~CaICLeef~~~~~vr~L-PC~H~FH~~CI~~W 239 (281)
+.+...|.+|...|..-..--.. .||++||..|....
T Consensus 66 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 66 DNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 33456799999999753322222 49999999996543
No 117
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=55.86 E-value=7.6 Score=28.52 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=25.9
Q ss_pred CCCcccccccccccCCCCceeEc-CCCCcccHhhHHHH
Q 023542 203 AGADQCCVICKEEMGGGRDVCEL-PCKHLFHWLCILPW 239 (281)
Q Consensus 203 ~~~~~~CaICLeef~~~~~vr~L-PC~H~FH~~CI~~W 239 (281)
+.+...|.+|...|..-..--.- .||.+||..|....
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred CccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 44566899999999753322222 49999999997653
No 118
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=54.85 E-value=2.3 Score=29.64 Aligned_cols=43 Identities=26% Similarity=0.607 Sum_probs=26.9
Q ss_pred CcccccccccccCCCCceeEcC--CC-CcccHhhHHHHHhc----CCCCCCccc
Q 023542 205 ADQCCVICKEEMGGGRDVCELP--CK-HLFHWLCILPWLKK----RNTCPCCRF 251 (281)
Q Consensus 205 ~~~~CaICLeef~~~~~vr~LP--C~-H~FH~~CI~~WL~~----~~tCPlCR~ 251 (281)
+..-| ||.+.. .++.+.-=. |. ..||..|+. +.. .-.||.|+.
T Consensus 8 e~~yC-~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS-YGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC-CCCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34556 998864 343222224 66 699999998 433 237999965
No 119
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=53.67 E-value=18 Score=27.93 Aligned_cols=45 Identities=20% Similarity=0.352 Sum_probs=27.1
Q ss_pred ccccccccccc-----CCCCceeEc-CCCCcccHhhHHH------HHhc-CCCCCCcc
Q 023542 206 DQCCVICKEEM-----GGGRDVCEL-PCKHLFHWLCILP------WLKK-RNTCPCCR 250 (281)
Q Consensus 206 ~~~CaICLeef-----~~~~~vr~L-PC~H~FH~~CI~~------WL~~-~~tCPlCR 250 (281)
...|.+|+..- ..++++..- .|+..||..|+.. .+.+ .-.||.|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 45699998752 122333333 5999999999953 2222 33677664
No 120
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=52.68 E-value=1.2 Score=31.91 Aligned_cols=45 Identities=24% Similarity=0.406 Sum_probs=27.3
Q ss_pred cccccccccccCCCCceeEc--CCCCcccHhhHHHHH---h-----cCCCCCCccc
Q 023542 206 DQCCVICKEEMGGGRDVCEL--PCKHLFHWLCILPWL---K-----KRNTCPCCRF 251 (281)
Q Consensus 206 ~~~CaICLeef~~~~~vr~L--PC~H~FH~~CI~~WL---~-----~~~tCPlCR~ 251 (281)
...| ||......+..+.-= .|...||..|+.--- . .+..||.||.
T Consensus 10 ~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 10 KVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp EECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 4557 897765555433221 288899999973210 0 1357999974
No 121
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=51.72 E-value=3.1 Score=38.93 Aligned_cols=56 Identities=14% Similarity=0.210 Sum_probs=0.0
Q ss_pred CCccCCCCcccccccccccCCCCceeEc-CCCCcccHhhHHHHHhc-------CCCCCCccccC
Q 023542 198 PSVDGAGADQCCVICKEEMGGGRDVCEL-PCKHLFHWLCILPWLKK-------RNTCPCCRFRL 253 (281)
Q Consensus 198 P~~~~~~~~~~CaICLeef~~~~~vr~L-PC~H~FH~~CI~~WL~~-------~~tCPlCR~~l 253 (281)
|.+.-..+...|.+|...|..-..--.. .||++||..|...+..- ...|-.|-..+
T Consensus 367 p~w~~~~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 367 PTLVPVTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ----------------------------------------------------------------
T ss_pred CcCCCcccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 3333344567899999998643221122 49999999999876521 23566664433
No 122
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.00 E-value=14 Score=27.20 Aligned_cols=36 Identities=14% Similarity=0.161 Sum_probs=24.6
Q ss_pred CCCcccccccccccCCCCceeEc-CCCCcccHhhHHH
Q 023542 203 AGADQCCVICKEEMGGGRDVCEL-PCKHLFHWLCILP 238 (281)
Q Consensus 203 ~~~~~~CaICLeef~~~~~vr~L-PC~H~FH~~CI~~ 238 (281)
+.+...|.+|...|..-..--.- .||.+||..|...
T Consensus 11 d~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 11 TNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 44556899999999643321122 4999999999543
No 123
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=49.95 E-value=2.8 Score=30.91 Aligned_cols=43 Identities=28% Similarity=0.580 Sum_probs=26.8
Q ss_pred cccccccccCCCCceeEc-CCCCcccHhhHHHHHhc----C-CCCCCccc
Q 023542 208 CCVICKEEMGGGRDVCEL-PCKHLFHWLCILPWLKK----R-NTCPCCRF 251 (281)
Q Consensus 208 ~CaICLeef~~~~~vr~L-PC~H~FH~~CI~~WL~~----~-~tCPlCR~ 251 (281)
.|.||...- ++.++..- -|...||..|+++-|.. . =.||.|+.
T Consensus 28 ~C~vC~~~~-d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCC-CCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 466665542 22233222 49999999999976653 2 37999975
No 124
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=49.45 E-value=1.5 Score=32.99 Aligned_cols=49 Identities=24% Similarity=0.605 Sum_probs=32.8
Q ss_pred cccccccccccCC-CCceeEc-CCCCcccHhhHHHHHhc--------CCCCCCccccCC
Q 023542 206 DQCCVICKEEMGG-GRDVCEL-PCKHLFHWLCILPWLKK--------RNTCPCCRFRLP 254 (281)
Q Consensus 206 ~~~CaICLeef~~-~~~vr~L-PC~H~FH~~CI~~WL~~--------~~tCPlCR~~l~ 254 (281)
+..|.||...-.. +..+... -|...||..|..+-+.. .=.|+.|+....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 5679999875322 1233333 49999999999876541 237999976553
No 125
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=48.29 E-value=8.5 Score=27.07 Aligned_cols=42 Identities=24% Similarity=0.553 Sum_probs=28.9
Q ss_pred ccccccccccCCCCceeEcC-CCCcccHhhHHHHHhcCCCCCCc
Q 023542 207 QCCVICKEEMGGGRDVCELP-CKHLFHWLCILPWLKKRNTCPCC 249 (281)
Q Consensus 207 ~~CaICLeef~~~~~vr~LP-C~H~FH~~CI~~WL~~~~tCPlC 249 (281)
..|-.|...|.+.. ...-+ |++.||.+|=.---+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccchhHHHHhhccCCcCC
Confidence 45999999985322 23344 99999999954433445579988
No 126
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=47.97 E-value=8.6 Score=33.13 Aligned_cols=34 Identities=18% Similarity=0.332 Sum_probs=24.2
Q ss_pred cccccccccccCCCCceeEc-CCCCcccHhhHHHH
Q 023542 206 DQCCVICKEEMGGGRDVCEL-PCKHLFHWLCILPW 239 (281)
Q Consensus 206 ~~~CaICLeef~~~~~vr~L-PC~H~FH~~CI~~W 239 (281)
+..|.+|...|..-..--.. .||++||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 57899999999643322223 49999999996543
No 127
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=47.23 E-value=12 Score=26.72 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=23.0
Q ss_pred cccccccccccCCCCceeEc-CCCCcccHhhHHH
Q 023542 206 DQCCVICKEEMGGGRDVCEL-PCKHLFHWLCILP 238 (281)
Q Consensus 206 ~~~CaICLeef~~~~~vr~L-PC~H~FH~~CI~~ 238 (281)
+..|.+|...|..-..--.- .||.+||..|...
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 35799999998643321222 4999999999653
No 128
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=47.12 E-value=3.5 Score=28.73 Aligned_cols=42 Identities=26% Similarity=0.638 Sum_probs=25.7
Q ss_pred cccccccccccCCCCceeEcC--CC-CcccHhhHHHHHhc----CCCCCCccc
Q 023542 206 DQCCVICKEEMGGGRDVCELP--CK-HLFHWLCILPWLKK----RNTCPCCRF 251 (281)
Q Consensus 206 ~~~CaICLeef~~~~~vr~LP--C~-H~FH~~CI~~WL~~----~~tCPlCR~ 251 (281)
...| ||.... .+..+.-=. |. ..||..|+. +.. .-.||.|+.
T Consensus 10 ~~~C-~C~~~~-~g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVS-YGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcC-CCCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 4556 998864 333221113 55 689999998 443 236998864
No 129
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=46.76 E-value=13 Score=27.87 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=24.4
Q ss_pred CcccccccccccCCCCceeEc-CCCCcccHhhHHHH
Q 023542 205 ADQCCVICKEEMGGGRDVCEL-PCKHLFHWLCILPW 239 (281)
Q Consensus 205 ~~~~CaICLeef~~~~~vr~L-PC~H~FH~~CI~~W 239 (281)
+...|.+|...|..-..--.. .||.+||..|....
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 355799999999753322222 49999999997653
No 130
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=45.83 E-value=2.5 Score=33.87 Aligned_cols=47 Identities=17% Similarity=0.311 Sum_probs=30.5
Q ss_pred cccccccccccCCCCceeEc-CCCCcccHhhHHHHHhcCCCCCCcccc
Q 023542 206 DQCCVICKEEMGGGRDVCEL-PCKHLFHWLCILPWLKKRNTCPCCRFR 252 (281)
Q Consensus 206 ~~~CaICLeef~~~~~vr~L-PC~H~FH~~CI~~WL~~~~tCPlCR~~ 252 (281)
...|..|-..|..-..--.. .||.+||..|..........|-.|-..
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 45799999999653322222 599999999987766666778888443
No 131
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=45.77 E-value=9.6 Score=33.16 Aligned_cols=34 Identities=18% Similarity=0.410 Sum_probs=24.5
Q ss_pred cccccccccccCCCCceeEc-CCCCcccHhhHHHH
Q 023542 206 DQCCVICKEEMGGGRDVCEL-PCKHLFHWLCILPW 239 (281)
Q Consensus 206 ~~~CaICLeef~~~~~vr~L-PC~H~FH~~CI~~W 239 (281)
+..|.+|...|..-..--.. .||.+||..|-...
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 46899999999753322233 49999999997654
No 132
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.12 E-value=22 Score=24.76 Aligned_cols=42 Identities=19% Similarity=0.369 Sum_probs=31.1
Q ss_pred CcccccccccccCCCCceeEcCCCCcccHhhHHHHHhcCCCCCCccccCCCC
Q 023542 205 ADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPTD 256 (281)
Q Consensus 205 ~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~~~ 256 (281)
....|+.|-+.+..++.+. .-+..||.+| .+|-.|+..+..+
T Consensus 8 ~~~~C~~C~~~I~~~~~v~--a~~~~~H~~C--------F~C~~C~~~L~~~ 49 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVS--SLGKDWHKFC--------LKCERCSKTLTPG 49 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEE--ETTEEEETTT--------CBCSSSCCBCCTT
T ss_pred CCCCCcCCCCEeECCeEEE--ECCeEeeCCC--------CCCCCCCCccCCC
Confidence 3567999999988666543 3577889877 4699999888754
No 133
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=44.81 E-value=4.9 Score=28.89 Aligned_cols=43 Identities=28% Similarity=0.585 Sum_probs=27.4
Q ss_pred cccccccccCCCCceeEc-CCCCcccHhhHHHHHhc-----CCCCCCccc
Q 023542 208 CCVICKEEMGGGRDVCEL-PCKHLFHWLCILPWLKK-----RNTCPCCRF 251 (281)
Q Consensus 208 ~CaICLeef~~~~~vr~L-PC~H~FH~~CI~~WL~~-----~~tCPlCR~ 251 (281)
.|.||...- ++..+..- .|...||..|+++=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCS-CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcC-CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 466776532 22333333 49999999999865543 227999975
No 134
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=44.81 E-value=16 Score=34.69 Aligned_cols=63 Identities=24% Similarity=0.362 Sum_probs=38.5
Q ss_pred cccccccccccCCCCceeEcCCCCcccH--hhHHHHHhc--CCCCCCccccCCCCCchhHHHHHHHHHHH
Q 023542 206 DQCCVICKEEMGGGRDVCELPCKHLFHW--LCILPWLKK--RNTCPCCRFRLPTDDVFGEIERLWDALVK 271 (281)
Q Consensus 206 ~~~CaICLeef~~~~~vr~LPC~H~FH~--~CI~~WL~~--~~tCPlCR~~l~~~~~~~e~~rl~~~l~~ 271 (281)
...|++=...+. ..+|...|.|.-|. .=+...-.+ .-.||+|...+..++.. .-+-.++.++.
T Consensus 249 SL~CPlS~~ri~--~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~-ID~~~~~IL~~ 315 (371)
T 3i2d_A 249 SLQCPISYTRMK--YPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLA-ISEFVDDILQN 315 (371)
T ss_dssp ESBCTTTSSBCS--SEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEE-EBHHHHHHHTT
T ss_pred eecCCCcccccc--ccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHee-EcHHHHHHHHh
Confidence 567999888876 45677789998443 333333222 23799998877665532 33344555543
No 135
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.46 E-value=4.7 Score=29.60 Aligned_cols=43 Identities=26% Similarity=0.568 Sum_probs=28.6
Q ss_pred cccccccccCCCCceeEc-CCCCcccHhhHHHHHhc-----CCCCCCccc
Q 023542 208 CCVICKEEMGGGRDVCEL-PCKHLFHWLCILPWLKK-----RNTCPCCRF 251 (281)
Q Consensus 208 ~CaICLeef~~~~~vr~L-PC~H~FH~~CI~~WL~~-----~~tCPlCR~ 251 (281)
.|.||...- ++..+..- .|...||..|+++=|.. .=.||.|+.
T Consensus 28 ~C~vC~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKH-EPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCC-CSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcC-CCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 688887642 23333333 49999999999865543 226999965
No 136
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=44.39 E-value=12 Score=26.29 Aligned_cols=38 Identities=24% Similarity=0.437 Sum_probs=19.2
Q ss_pred ccccccccCCCCceeEcCCCCcccHhhHHHHHhcCCCCCCccccCCCC
Q 023542 209 CVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPTD 256 (281)
Q Consensus 209 CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~~~ 256 (281)
|+.|-+.+..++.+.. -+..||.+| .+|-.|+.++..+
T Consensus 3 C~~C~~~I~~~~~v~a--~~~~~H~~C--------F~C~~C~~~L~~~ 40 (76)
T 1iml_A 3 CPKCDKEVYFAERVTS--LGKDWHRPC--------LKCEKCGKTLTSG 40 (76)
T ss_dssp CTTTSSBCCGGGEEEE--TTEEEETTT--------CBCTTTCCBCCTT
T ss_pred CCCCCCEEECceEEEE--CCccccCCC--------CCccccCccCCCC
Confidence 5566665544443322 255566544 3366666555443
No 137
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=44.29 E-value=4.4 Score=28.52 Aligned_cols=42 Identities=29% Similarity=0.644 Sum_probs=26.2
Q ss_pred cccccccccccCCCCceeEcC--CC-CcccHhhHHHHHhc----CCCCCCccc
Q 023542 206 DQCCVICKEEMGGGRDVCELP--CK-HLFHWLCILPWLKK----RNTCPCCRF 251 (281)
Q Consensus 206 ~~~CaICLeef~~~~~vr~LP--C~-H~FH~~CI~~WL~~----~~tCPlCR~ 251 (281)
...| ||.+.. .+..+.-=. |. ..||..|+. +.. .-.||.|+.
T Consensus 11 ~~yC-~C~~~~-~g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVS-YGEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEEC-CSEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCC-CCCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 4556 998863 343222113 55 899999997 332 337999965
No 138
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=42.18 E-value=17 Score=34.28 Aligned_cols=63 Identities=19% Similarity=0.327 Sum_probs=39.4
Q ss_pred cccccccccccCCCCceeEcCCCCc--ccHhhHHHHHhcC--CCCCCccccCCCCCchhHHHHHHHHHHH
Q 023542 206 DQCCVICKEEMGGGRDVCELPCKHL--FHWLCILPWLKKR--NTCPCCRFRLPTDDVFGEIERLWDALVK 271 (281)
Q Consensus 206 ~~~CaICLeef~~~~~vr~LPC~H~--FH~~CI~~WL~~~--~tCPlCR~~l~~~~~~~e~~rl~~~l~~ 271 (281)
...|++=...++ ..+|...|.|. |-..=+....++. -.||+|...+..++.. .-+-.++.+..
T Consensus 215 SL~CPlS~~ri~--~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~-ID~~~~~IL~~ 281 (360)
T 4fo9_A 215 SLMCPLGKMRLT--IPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLI-LDGLFMEILND 281 (360)
T ss_dssp ESBCTTTCSBCS--SEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEE-EBHHHHHHHTT
T ss_pred eeeCCCccceec--cCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeE-EcHHHHHHHHh
Confidence 567999888876 45667789999 5443333333332 3799999887665533 34445555543
No 139
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=42.05 E-value=3.6 Score=25.95 Aligned_cols=15 Identities=20% Similarity=0.572 Sum_probs=9.0
Q ss_pred cccccccccccCCCC
Q 023542 206 DQCCVICKEEMGGGR 220 (281)
Q Consensus 206 ~~~CaICLeef~~~~ 220 (281)
+..|++|+.++...+
T Consensus 5 GFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 5 GFICPQCMKSLGSAD 19 (34)
T ss_dssp EEECTTTCCEESSHH
T ss_pred ccCCcHHHHHcCCHH
Confidence 456777776665433
No 140
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=41.62 E-value=24 Score=25.35 Aligned_cols=49 Identities=18% Similarity=0.261 Sum_probs=31.3
Q ss_pred CCCccccccccccc-CCCCceeEc-CCCCcccHhhHHHHHh--cCCCCCCccc
Q 023542 203 AGADQCCVICKEEM-GGGRDVCEL-PCKHLFHWLCILPWLK--KRNTCPCCRF 251 (281)
Q Consensus 203 ~~~~~~CaICLeef-~~~~~vr~L-PC~H~FH~~CI~~WL~--~~~tCPlCR~ 251 (281)
..++..|.||.+.- .++..+..- .|.-.||..|+..-.. ..=.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 34577899998753 223333333 4999999999975322 1226888854
No 141
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=39.65 E-value=13 Score=30.07 Aligned_cols=34 Identities=24% Similarity=0.490 Sum_probs=23.3
Q ss_pred CcccccccccccCC-CCceeEc-CCCCcccHhhHHH
Q 023542 205 ADQCCVICKEEMGG-GRDVCEL-PCKHLFHWLCILP 238 (281)
Q Consensus 205 ~~~~CaICLeef~~-~~~vr~L-PC~H~FH~~CI~~ 238 (281)
++..|.+|...|.. +..-+.. -|.|.+|..|-..
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~ 89 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVE 89 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCc
Confidence 46789999999942 2222233 4999999988553
No 142
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.64 E-value=25 Score=25.09 Aligned_cols=43 Identities=28% Similarity=0.579 Sum_probs=30.9
Q ss_pred CcccccccccccCCCCceeEcCCCCcccHhhHHHHHhcCCCCCCccccCCCCC
Q 023542 205 ADQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPTDD 257 (281)
Q Consensus 205 ~~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 257 (281)
....|+.|-+.+...+.+. .-+..||..| .+|-.|+..+....
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a~~~~wH~~C--------F~C~~C~~~L~~~~ 56 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--VNGHFFHRSC--------FRCHTCEATLWPGG 56 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--BTTBCCBTTT--------CBCSSSCCBCCTTS
T ss_pred CCCCCcccCCCcccceEEE--ECCCeeCCCc--------CEEcCCCCCcCCCc
Confidence 3567999999887666443 3577899877 45888888876544
No 143
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=39.59 E-value=6.4 Score=34.89 Aligned_cols=43 Identities=28% Similarity=0.585 Sum_probs=25.4
Q ss_pred cccccccccCCCCceeEc-CCCCcccHhhHHHHHhc-----CCCCCCccc
Q 023542 208 CCVICKEEMGGGRDVCEL-PCKHLFHWLCILPWLKK-----RNTCPCCRF 251 (281)
Q Consensus 208 ~CaICLeef~~~~~vr~L-PC~H~FH~~CI~~WL~~-----~~tCPlCR~ 251 (281)
.|.+|...- ++..+... -|...||..|+++=|.. .=.||.|+.
T Consensus 176 ~C~vC~~~~-~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCC-C--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCC-CCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 588887642 22333333 49999999999965543 226999965
No 144
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=39.05 E-value=6.3 Score=31.00 Aligned_cols=29 Identities=21% Similarity=0.554 Sum_probs=18.5
Q ss_pred CCCCcccHhhHHHHHhcCCCCCCccccCCCCCch
Q 023542 226 PCKHLFHWLCILPWLKKRNTCPCCRFRLPTDDVF 259 (281)
Q Consensus 226 PC~H~FH~~CI~~WL~~~~tCPlCR~~l~~~~~~ 259 (281)
.||+.|. .=+.....||.|+........+
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~Ie~P~F 100 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEWIEEPRF 100 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCCBCCCCE
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCccCCcce
Confidence 3888881 1123457899999887655433
No 145
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=37.99 E-value=20 Score=27.89 Aligned_cols=47 Identities=23% Similarity=0.590 Sum_probs=29.9
Q ss_pred CCcccccccccccCCCCceeEc---CCCCcccHhhHHHHHhcC----CCCCCccccCCCC
Q 023542 204 GADQCCVICKEEMGGGRDVCEL---PCKHLFHWLCILPWLKKR----NTCPCCRFRLPTD 256 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~L---PC~H~FH~~CI~~WL~~~----~tCPlCR~~l~~~ 256 (281)
..+..|.+|.+ .|+ +..- .|-..||..|+. |... -.||.|+-.+..+
T Consensus 13 ~~~~~C~~C~~---~G~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 13 MHEDYCFQCGD---GGE-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp SSCSSCTTTCC---CSE-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCCCCCCcCCC---CCc-EeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 34667999984 233 3333 388899999997 5432 2588776555433
No 146
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=37.48 E-value=14 Score=30.56 Aligned_cols=46 Identities=15% Similarity=0.302 Sum_probs=29.5
Q ss_pred CcccccccccccCC--CCceeEcCCCCcccHhhHHHHHhcCC--CCCCccc
Q 023542 205 ADQCCVICKEEMGG--GRDVCELPCKHLFHWLCILPWLKKRN--TCPCCRF 251 (281)
Q Consensus 205 ~~~~CaICLeef~~--~~~vr~LPC~H~FH~~CI~~WL~~~~--tCPlCR~ 251 (281)
++..|++|...|.. +....-..|.|.+|..|- .|..... .|-+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 47789999998743 222222359999999997 3443322 4666643
No 147
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=37.24 E-value=24 Score=29.61 Aligned_cols=44 Identities=27% Similarity=0.527 Sum_probs=30.7
Q ss_pred CCcccccccccccCCCCceeEc---CCCCcccHhhHHHHHhcC----------CCCCCccc
Q 023542 204 GADQCCVICKEEMGGGRDVCEL---PCKHLFHWLCILPWLKKR----------NTCPCCRF 251 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~L---PC~H~FH~~CI~~WL~~~----------~tCPlCR~ 251 (281)
+.+..|.||-+ |.++... .|...||.+||+.++... =.|=+|.-
T Consensus 77 G~~~yC~wC~~----Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 77 GYQSYCTICCG----GREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp SSBSSCTTTSC----CSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCcceeeEecC----CCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 34677999975 3344333 399999999999998541 16888853
No 148
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=36.81 E-value=18 Score=26.11 Aligned_cols=32 Identities=22% Similarity=0.434 Sum_probs=24.7
Q ss_pred CCcccccccccccCCCCceeEcCC-CCcccHhhHHHH
Q 023542 204 GADQCCVICKEEMGGGRDVCELPC-KHLFHWLCILPW 239 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~LPC-~H~FH~~CI~~W 239 (281)
++..-|.||.++ ..++-+.| +-.||..|...-
T Consensus 6 ee~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNED----ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSC----CCEEETTTTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCC----CeEEecCCCCceehHHHHHHH
Confidence 345669999886 45777889 889999996664
No 149
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=36.38 E-value=13 Score=29.00 Aligned_cols=13 Identities=23% Similarity=0.670 Sum_probs=11.4
Q ss_pred cccHhhHHHHHhc
Q 023542 230 LFHWLCILPWLKK 242 (281)
Q Consensus 230 ~FH~~CI~~WL~~ 242 (281)
.||+.|+.+|++.
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999974
No 150
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=36.14 E-value=5 Score=26.91 Aligned_cols=40 Identities=25% Similarity=0.506 Sum_probs=25.4
Q ss_pred ccccccCCCCceeEc-CCCCcccHhhHHHHHh---cCCCCCCccc
Q 023542 211 ICKEEMGGGRDVCEL-PCKHLFHWLCILPWLK---KRNTCPCCRF 251 (281)
Q Consensus 211 ICLeef~~~~~vr~L-PC~H~FH~~CI~~WL~---~~~tCPlCR~ 251 (281)
||..... +.....- .|...||..|+.---. ..-.||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6877654 3333333 5999999999864332 3447888864
No 151
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=36.11 E-value=13 Score=28.91 Aligned_cols=13 Identities=31% Similarity=0.708 Sum_probs=11.4
Q ss_pred cccHhhHHHHHhc
Q 023542 230 LFHWLCILPWLKK 242 (281)
Q Consensus 230 ~FH~~CI~~WL~~ 242 (281)
.||+.|+.+|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999873
No 152
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=34.98 E-value=6.7 Score=30.13 Aligned_cols=44 Identities=25% Similarity=0.591 Sum_probs=27.8
Q ss_pred cccccccccCCCCceeEc-CCCCcccHhhHHHHHhc----CCCCCCcccc
Q 023542 208 CCVICKEEMGGGRDVCEL-PCKHLFHWLCILPWLKK----RNTCPCCRFR 252 (281)
Q Consensus 208 ~CaICLeef~~~~~vr~L-PC~H~FH~~CI~~WL~~----~~tCPlCR~~ 252 (281)
.|.||.+.-.+ +++..- .|...||..|+++=+.. .-.||.|+..
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 46677664322 233333 49999999999875543 2369888654
No 153
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=33.59 E-value=2.2 Score=33.39 Aligned_cols=44 Identities=18% Similarity=0.499 Sum_probs=28.3
Q ss_pred cccccccccCCCCceeEc-CCCCcccHhhHHHHHhcC----CCCCCcccc
Q 023542 208 CCVICKEEMGGGRDVCEL-PCKHLFHWLCILPWLKKR----NTCPCCRFR 252 (281)
Q Consensus 208 ~CaICLeef~~~~~vr~L-PC~H~FH~~CI~~WL~~~----~tCPlCR~~ 252 (281)
.|.||...-.+ ..+..- .|...||..|+.+=+... -.||.|+..
T Consensus 60 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 60 SCILCGTSEND-DQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWEL 108 (114)
T ss_dssp CCTTTTCCTTT-TTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCcccccCCC-CceEEcCCCCccccccccCCCccCCCCCCeECccccch
Confidence 57888765323 333333 599999999998654432 258888654
No 154
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=33.16 E-value=5.8 Score=23.92 Aligned_cols=17 Identities=29% Similarity=0.811 Sum_probs=11.5
Q ss_pred CCCCCccccCCCCCchh
Q 023542 244 NTCPCCRFRLPTDDVFG 260 (281)
Q Consensus 244 ~tCPlCR~~l~~~~~~~ 260 (281)
.+||+|+...+..+...
T Consensus 4 ~~CpvCk~q~Pd~kt~~ 20 (28)
T 2jvx_A 4 FCCPKCQYQAPDMDTLQ 20 (28)
T ss_dssp EECTTSSCEESSHHHHH
T ss_pred ccCccccccCcChHHHH
Confidence 36899988776655443
No 155
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.14 E-value=29 Score=24.73 Aligned_cols=39 Identities=28% Similarity=0.611 Sum_probs=29.4
Q ss_pred cccccccccccCCCCceeEcCCCCcccHhhHHHHHhcCCCCCCccccCC
Q 023542 206 DQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLP 254 (281)
Q Consensus 206 ~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~ 254 (281)
...|+.|-+.+.+++.+.. -+..||.+| .+|-.|+..+.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a--~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLA--LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEE--TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEEE--CCccccccc--------CCcCcCCCCcC
Confidence 5569999999876665544 467788776 56889988876
No 156
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.51 E-value=40 Score=22.91 Aligned_cols=43 Identities=21% Similarity=0.344 Sum_probs=29.9
Q ss_pred cccccccccccCCCCceeEcCCCCcccHhhHHHHHhcCCCCCCccccCCCCC
Q 023542 206 DQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPTDD 257 (281)
Q Consensus 206 ~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 257 (281)
...|+.|-+.+..++.+ ...-+..||..| .+|-.|+.++..+.
T Consensus 5 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~C--------F~C~~C~~~L~~~~ 47 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRK-LEYGGQTWHEHC--------FLCSGCEQPLGSRS 47 (72)
T ss_dssp CCBCSSSCCBCCSSSCE-ECSTTCCEETTT--------CBCTTTCCBTTTSC
T ss_pred CCCCccCCCccccCccE-EEECccccCccc--------CeECCCCCcCCCCc
Confidence 45699999988764332 223577889876 46889988886554
No 157
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=29.10 E-value=33 Score=32.66 Aligned_cols=45 Identities=18% Similarity=0.431 Sum_probs=31.2
Q ss_pred CCcccccccccccCCCCceeEc---CCCCcccHhhHHHHHhc----------CCCCCCcccc
Q 023542 204 GADQCCVICKEEMGGGRDVCEL---PCKHLFHWLCILPWLKK----------RNTCPCCRFR 252 (281)
Q Consensus 204 ~~~~~CaICLeef~~~~~vr~L---PC~H~FH~~CI~~WL~~----------~~tCPlCR~~ 252 (281)
+.+..|.+|-+- .++... .|...||..||++++.. .=.|=+|.-.
T Consensus 91 G~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 91 GYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 346779999763 333332 49999999999999842 2278888643
No 158
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.91 E-value=47 Score=22.53 Aligned_cols=42 Identities=24% Similarity=0.404 Sum_probs=29.1
Q ss_pred cccccccccccCCCCceeEcCCCCcccHhhHHHHHhcCCCCCCccccCCCC
Q 023542 206 DQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPTD 256 (281)
Q Consensus 206 ~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~~~ 256 (281)
...|+.|-+.+..++.+.. .-+..||..| .+|-.|+..+...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-a~~~~~H~~C--------F~C~~C~~~L~~~ 46 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKME-YKGSSWHETC--------FICHRCQQPIGTK 46 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEE-ETTEEEETTT--------TCCSSSCCCCCSS
T ss_pred CCCCccCCCcccCCceEEE-ECcCeecccC--------CcccccCCccCCC
Confidence 3469999998876543322 2567888766 4688998888655
No 159
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.23 E-value=63 Score=22.53 Aligned_cols=43 Identities=23% Similarity=0.404 Sum_probs=30.8
Q ss_pred cccccccccccCCCCceeEcCCCCcccHhhHHHHHhcCCCCCCccccCCCCC
Q 023542 206 DQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPTDD 257 (281)
Q Consensus 206 ~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 257 (281)
...|+.|-+.+..++.+.. .-+..||.+| .+|-.|+..+..+.
T Consensus 15 ~~~C~~C~~~I~~~~~~~~-a~~~~~H~~C--------F~C~~C~~~L~~~~ 57 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVE-YKGTVWHKDC--------FTCSNCKQVIGTGS 57 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEE-CSSCEEETTT--------CCCSSSCCCCTTSC
T ss_pred CCcCccCCcccccCceEEE-ECcccccccc--------CchhhCCCccCCCc
Confidence 4579999999876554322 3577899776 46889998887653
No 160
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=27.91 E-value=13 Score=35.99 Aligned_cols=46 Identities=22% Similarity=0.385 Sum_probs=30.3
Q ss_pred cccccccccCCCCceeEc-CCCCcccHhhHHHHHh-----cCCCCCCccccC
Q 023542 208 CCVICKEEMGGGRDVCEL-PCKHLFHWLCILPWLK-----KRNTCPCCRFRL 253 (281)
Q Consensus 208 ~CaICLeef~~~~~vr~L-PC~H~FH~~CI~~WL~-----~~~tCPlCR~~l 253 (281)
...||...+.++...... -|...||..|+.---. ..-.||.|+...
T Consensus 6 ~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~ 57 (447)
T 3kv4_A 6 VYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLH 57 (447)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHH
T ss_pred eEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCcccc
Confidence 355898877534433344 5999999999953221 245899997654
No 161
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.74 E-value=67 Score=21.78 Aligned_cols=41 Identities=27% Similarity=0.524 Sum_probs=26.9
Q ss_pred cccccccccccCCCCceeEcCCCCcccHhhHHHHHhcCCCCCCccccCCC
Q 023542 206 DQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPT 255 (281)
Q Consensus 206 ~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~~ 255 (281)
...|+.|-+.+...+.. ...=+..||..| .+|-.|+..+..
T Consensus 5 ~~~C~~C~~~I~~~~~~-~~a~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAG-VVALDRVFHVGC--------FVCSTCRAQLRG 45 (72)
T ss_dssp CCCCSSSCSCCCSSSCC-EECSSSEECTTT--------CBCSSSCCBCTT
T ss_pred CCCCccCCCccCCCceE-EEECCCeEcccC--------CcccccCCcCCc
Confidence 45688998877653322 223567888776 458888888843
No 162
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.11 E-value=43 Score=23.05 Aligned_cols=43 Identities=21% Similarity=0.495 Sum_probs=29.6
Q ss_pred cccccccccccCCCCceeEcCCCCcccHhhHHHHHhcCCCCCCccccCCCCC
Q 023542 206 DQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPTDD 257 (281)
Q Consensus 206 ~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 257 (281)
...|+.|-+.+...+.+.. .-+..||..| .+|-.|+..+..+.
T Consensus 11 ~~~C~~C~~~I~~~~~~~~-a~~~~~H~~C--------F~C~~C~~~L~~~~ 53 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVN-SNGELYHEQC--------FVCAQCFQQFPEGL 53 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEE-ETTEEECTTT--------CCCTTTCCCCGGGC
T ss_pred CCCchhcCCccCCCceEEE-eCccEecccc--------CeECCCCCCCCCCC
Confidence 5679999998875444322 2467788776 46888888876543
No 163
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.49 E-value=72 Score=21.65 Aligned_cols=41 Identities=22% Similarity=0.460 Sum_probs=28.1
Q ss_pred cccccccccccCC--CCceeEcCCCCcccHhhHHHHHhcCCCCCCccccCCC
Q 023542 206 DQCCVICKEEMGG--GRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPT 255 (281)
Q Consensus 206 ~~~CaICLeef~~--~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~~ 255 (281)
...|+.|-+.+.. ++.+. ..-+..||.+| .+|-.|+..+..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~-~a~~~~wH~~C--------F~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYI-SFEERQWHNDC--------FNCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCE-ECSSCEECTTT--------CBCSSSCCBCTT
T ss_pred CCCCcCCCccccCCCCcceE-EECCcccCccc--------CEeccCCCcCCC
Confidence 4569999998875 22322 23678899877 468889888753
No 164
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=26.11 E-value=12 Score=25.99 Aligned_cols=36 Identities=25% Similarity=0.719 Sum_probs=23.9
Q ss_pred cccccccccccCCCCceeEc--C---CCCcccHhhHHHHHh
Q 023542 206 DQCCVICKEEMGGGRDVCEL--P---CKHLFHWLCILPWLK 241 (281)
Q Consensus 206 ~~~CaICLeef~~~~~vr~L--P---C~H~FH~~CI~~WL~ 241 (281)
...|+-|.-.++-.+....+ . |++.||+.|..+|-.
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 35688888777654322222 2 788899999888864
No 165
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=24.61 E-value=15 Score=27.77 Aligned_cols=42 Identities=24% Similarity=0.559 Sum_probs=25.9
Q ss_pred CcccccccccccCCCCceeEc-CCC---CcccHhhHHHHHhc----CCCCCC-ccc
Q 023542 205 ADQCCVICKEEMGGGRDVCEL-PCK---HLFHWLCILPWLKK----RNTCPC-CRF 251 (281)
Q Consensus 205 ~~~~CaICLeef~~~~~vr~L-PC~---H~FH~~CI~~WL~~----~~tCPl-CR~ 251 (281)
+...| ||.... .++ +..- .|. ..||..|+. |.. .-.||. |+.
T Consensus 25 ~~~yC-iC~~~~-~g~-MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 25 EEVYC-FCRNVS-YGP-MVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CSCCS-TTTCCC-SSS-EECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCcEE-EeCCCC-CCC-EEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 35567 998753 343 2222 354 789999986 332 337999 863
No 166
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=24.18 E-value=35 Score=26.25 Aligned_cols=40 Identities=15% Similarity=0.470 Sum_probs=23.3
Q ss_pred cccccccccCCCCceeEcCCCCcccHhhHHHHHhcCCCCCCccccCCCC
Q 023542 208 CCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPTD 256 (281)
Q Consensus 208 ~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~~~ 256 (281)
.|+.|-..+...+.+.. .-+..||..| ..|-.|+..+..+
T Consensus 10 ~C~~C~~~I~~~e~~~~-a~~~~~H~~C--------F~C~~C~~~L~~g 49 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMR-VKDKVYHLEC--------FKCAACQKHFSVG 49 (123)
T ss_dssp CCSSSSCCCCTTCCCCC-CSSCCCCTTT--------CBCTTTCCBCCTT
T ss_pred cccCCCCeecCCceEEE-ECCccccccc--------CccccCCCCCCCC
Confidence 57778777664332211 2466677666 3477777776433
No 167
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=24.16 E-value=30 Score=20.63 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=19.4
Q ss_pred ccccccccccCCCCceeEcCCCCcccHhh
Q 023542 207 QCCVICKEEMGGGRDVCELPCKHLFHWLC 235 (281)
Q Consensus 207 ~~CaICLeef~~~~~vr~LPC~H~FH~~C 235 (281)
..|+.|-..+...+++. .=+..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--CLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--SSSSCCCGGG
T ss_pred CcCCccCCEEecceeEE--ECCeEecccC
Confidence 46999988877665433 3578899888
No 168
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.29 E-value=50 Score=23.08 Aligned_cols=41 Identities=22% Similarity=0.455 Sum_probs=27.6
Q ss_pred cccccccccccCCCCceeEcCCCCcccHhhHHHHHhcCCCCCCccccCCCCC
Q 023542 206 DQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPTDD 257 (281)
Q Consensus 206 ~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 257 (281)
...|+.|-+.+. ++.+. .-+..||.+| .+|-.|+..+..++
T Consensus 15 ~~~C~~C~~~I~-~~~~~--a~~~~~H~~C--------F~C~~C~~~L~~g~ 55 (81)
T 1x6a_A 15 GEFCHGCSLLMT-GPFMV--AGEFKYHPEC--------FACMSCKVIIEDGD 55 (81)
T ss_dssp SCBCTTTCCBCC-SCCBC--CTTCCBCTTS--------CBCTTTCCBCCTTS
T ss_pred CCcCccCCCCcC-ceEEE--ECCceecccc--------CCccCCCCccCCCC
Confidence 346999988877 33222 3577788766 45888988886543
No 169
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=23.27 E-value=29 Score=24.46 Aligned_cols=42 Identities=24% Similarity=0.415 Sum_probs=29.2
Q ss_pred cccccccccccCCCCceeEcCCCCcccHhhHHHHHhcCCCCCCccccCCCCC
Q 023542 206 DQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPTDD 257 (281)
Q Consensus 206 ~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 257 (281)
...|+.|-+.+.+++.+. .-+..||.+| .+|-.|+..+....
T Consensus 7 ~~~C~~C~~~I~~~~~~~--a~~~~~H~~C--------F~C~~C~~~L~~~~ 48 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQ--CDGRSFHRCC--------FLCMVCRKNLDSTT 48 (81)
T ss_dssp -CBCSSSCCBCSSTTEEE--ETTEEEESSS--------EECSSSCCEECSSC
T ss_pred CCcCcCcCccccCceeEE--eCCccccccc--------CccCCCCCCCCCCC
Confidence 456999999887666443 3577888766 34888888876553
No 170
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.01 E-value=66 Score=23.11 Aligned_cols=42 Identities=24% Similarity=0.571 Sum_probs=30.0
Q ss_pred cccccccccccCCCCceeEcCCCCcccHhhHHHHHhcCCCCCCccccCCCCC
Q 023542 206 DQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPTDD 257 (281)
Q Consensus 206 ~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 257 (281)
...|+.|-+.+.+.+.+ ..-+..||..| ..|-.|+..+...+
T Consensus 15 ~~~C~~C~~~I~~~~~v--~a~~~~~H~~C--------F~C~~C~~~L~~~~ 56 (91)
T 2d8y_A 15 RETCVECQKTVYPMERL--LANQQVFHISC--------FRCSYCNNKLSLGT 56 (91)
T ss_dssp SCBCTTTCCBCCTTSEE--ECSSSEEETTT--------CBCTTTCCBCCTTT
T ss_pred CCcCccCCCccCCceeE--EECCCEECCCC--------CeeCCCCCCCCCCC
Confidence 45799999988765543 34677889877 45888888776543
No 171
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.93 E-value=90 Score=22.27 Aligned_cols=41 Identities=22% Similarity=0.363 Sum_probs=29.8
Q ss_pred cccccccccccCCCCceeEcCCCCcccHhhHHHHHhcCCCCCCccccCCCCC
Q 023542 206 DQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPTDD 257 (281)
Q Consensus 206 ~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 257 (281)
...|+.|-+.+.. +.+ ..-+..||.+| .+|-.|+..+..+.
T Consensus 25 ~~~C~~C~~~I~~-~~~--~a~~~~~H~~C--------F~C~~C~~~L~~~~ 65 (89)
T 1x64_A 25 MPLCDKCGSGIVG-AVV--KARDKYRHPEC--------FVCADCNLNLKQKG 65 (89)
T ss_dssp CCBCTTTCCBCCS-CCE--ESSSCEECTTT--------CCCSSSCCCTTTSC
T ss_pred CCCcccCCCEecc-cEE--EECCceECccC--------CEecCCCCCCCCCC
Confidence 4679999998874 322 24678899877 46999998886543
No 172
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=21.85 E-value=44 Score=22.45 Aligned_cols=42 Identities=21% Similarity=0.571 Sum_probs=29.6
Q ss_pred cccccccccccCCCCceeEcCCCCcccHhhHHHHHhcCCCCCCccccCCCC
Q 023542 206 DQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPTD 256 (281)
Q Consensus 206 ~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~~~ 256 (281)
...|+.|-..+..++.+.. .=+..||..|. .|-.|+..+..+
T Consensus 11 ~~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEE-ETTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEE-eCcCeeCcCCC--------cccCCCCCCCCC
Confidence 4579999998876654332 35667888774 688888887554
No 173
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.42 E-value=72 Score=22.24 Aligned_cols=41 Identities=27% Similarity=0.617 Sum_probs=28.9
Q ss_pred ccccccccccCCCCceeEcCCCCcccHhhHHHHHhcCCCCCCccccCCCCCc
Q 023542 207 QCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPTDDV 258 (281)
Q Consensus 207 ~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~~~~~ 258 (281)
..|+.|-+.+. ++.+. .-+..||.+| .+|-.|+..+..++.
T Consensus 16 ~~C~~C~~~I~-~~~v~--a~~~~wH~~C--------F~C~~C~~~L~~~~~ 56 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVS--ALGKTYHPDC--------FVCAVCRLPFPPGDR 56 (81)
T ss_dssp CBCTTTCCBCC-SCCEE--ETTEEECTTT--------SSCSSSCCCCCSSSC
T ss_pred CcCccccCEec-cceEE--ECCceeCccC--------CccccCCCCCCCCCE
Confidence 46999999886 34333 3577888766 458899888876553
No 174
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.08 E-value=86 Score=21.06 Aligned_cols=40 Identities=25% Similarity=0.505 Sum_probs=27.4
Q ss_pred cccccccccccCCCCceeEcCCCCcccHhhHHHHHhcCCCCCCccccCCCC
Q 023542 206 DQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPTD 256 (281)
Q Consensus 206 ~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~~~ 256 (281)
...|+.|-+.+.. +. ...-+..||.+| .+|-.|+.++..+
T Consensus 5 ~~~C~~C~~~I~~-~~--~~a~~~~~H~~C--------F~C~~C~~~L~~~ 44 (70)
T 2d8z_A 5 SSGCVQCKKPITT-GG--VTYREQPWHKEC--------FVCTACRKQLSGQ 44 (70)
T ss_dssp CCBCSSSCCBCCS-SE--EESSSSEEETTT--------SBCSSSCCBCTTS
T ss_pred CCCCcccCCeecc-ce--EEECccccCCCC--------CccCCCCCcCCcC
Confidence 3569999888863 32 224577888776 4588898887543
No 175
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=20.51 E-value=58 Score=24.13 Aligned_cols=32 Identities=28% Similarity=0.626 Sum_probs=20.9
Q ss_pred cccccccccccCCCCceeE--cCCCCcccHhhHHH
Q 023542 206 DQCCVICKEEMGGGRDVCE--LPCKHLFHWLCILP 238 (281)
Q Consensus 206 ~~~CaICLeef~~~~~vr~--LPC~H~FH~~CI~~ 238 (281)
...|.||.+. ..|.-+.- -.|.-.||..|..+
T Consensus 17 ~l~C~iC~~~-~~GAciqC~~~~C~~~fHv~CA~~ 50 (87)
T 2lq6_A 17 KLTCYLCKQK-GVGASIQCHKANCYTAFHVTCAQK 50 (87)
T ss_dssp CCCBTTTTBC-CSSCEEECSCTTTCCEEEHHHHHH
T ss_pred cCCCcCCCCC-CCcEeEecCCCCCCCcCcHHHHHH
Confidence 5679999653 12332222 13889999999876
No 176
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.32 E-value=71 Score=21.56 Aligned_cols=41 Identities=24% Similarity=0.403 Sum_probs=28.1
Q ss_pred cccccccccccCCCCceeEcCCCCcccHhhHHHHHhcCCCCCCccccCCCCC
Q 023542 206 DQCCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPTDD 257 (281)
Q Consensus 206 ~~~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 257 (281)
...|+.|-+.+.+ +.+. .-+..||.+| .+|-.|+..+....
T Consensus 5 ~~~C~~C~~~I~~-~~~~--a~~~~~H~~C--------F~C~~C~~~L~~~~ 45 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVIK--AMNNSWHPEC--------FRCDLCQEVLADIG 45 (70)
T ss_dssp SSBCSSSCCBCCS-CCEE--ETTEEECTTT--------SBCSSSCCBCSSSC
T ss_pred CCcCccCCCEecc-eEEE--ECcccccccC--------CEeCCCCCcCCCCc
Confidence 4569999888763 3332 3467788777 46888988886653
No 177
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.21 E-value=89 Score=21.52 Aligned_cols=41 Identities=24% Similarity=0.499 Sum_probs=27.4
Q ss_pred cccccccccccCC--CCceeEcCCCCcccHhhHHHHHhcCCCCCCccccCCC
Q 023542 206 DQCCVICKEEMGG--GRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPT 255 (281)
Q Consensus 206 ~~~CaICLeef~~--~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~~ 255 (281)
...|+.|-+.+.+ +.+. ...-+..||.+| .+|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~~~g~~~~-~~a~~~~wH~~C--------F~C~~C~~~L~~ 47 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKF-ICFQDSQWHSEC--------FNCGKCSVSLVG 47 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCE-EEETTEEEEGGG--------CBCTTTCCBCSS
T ss_pred CCCCccCCCcccCCCCcee-EEECCcccCccc--------CChhhCCCcCCC
Confidence 3469999998874 2222 223577889877 458888887753
No 178
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=20.13 E-value=51 Score=27.20 Aligned_cols=41 Identities=29% Similarity=0.642 Sum_probs=26.7
Q ss_pred cccccccccCCCCceeEcCCCCcccHhhHHHHHhcCCCCCCccccCCCCC
Q 023542 208 CCVICKEEMGGGRDVCELPCKHLFHWLCILPWLKKRNTCPCCRFRLPTDD 257 (281)
Q Consensus 208 ~CaICLeef~~~~~vr~LPC~H~FH~~CI~~WL~~~~tCPlCR~~l~~~~ 257 (281)
.|..|-..+...+.+.. .-+..||..| .+|-.|+..+..++
T Consensus 71 ~C~~C~~~I~~~e~~i~-a~~~~~H~~C--------F~C~~C~~~L~~g~ 111 (188)
T 1rut_X 71 ACSACGQSIPASELVMR-AQGNVYHLKC--------FTCSTCRNRLVPGD 111 (188)
T ss_dssp ECTTTCCEECTTSEEEE-ETTEEECGGG--------CBCTTTCCBCCTTC
T ss_pred ccccCCCccccCcEEEE-cCCCEEeCCC--------CeECCCCCCCCCCC
Confidence 58888887764443222 2577888877 46778877775444
No 179
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=20.04 E-value=9.2 Score=27.96 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=13.5
Q ss_pred CCCCcccHhhHHHHHh
Q 023542 226 PCKHLFHWLCILPWLK 241 (281)
Q Consensus 226 PC~H~FH~~CI~~WL~ 241 (281)
.|++.||..|...|=.
T Consensus 55 ~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCSCCEETTTTEECCS
T ss_pred CCCCeeccccCccccC
Confidence 4899999999998843
Done!