Query 023543
Match_columns 281
No_of_seqs 338 out of 2335
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 04:51:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023543.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023543hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10294 Methyltransf_16: Puta 100.0 1.2E-29 2.6E-34 211.8 11.0 165 77-249 3-172 (173)
2 COG2264 PrmA Ribosomal protein 99.9 2.7E-23 5.8E-28 184.7 19.9 192 38-258 94-288 (300)
3 PF06325 PrmA: Ribosomal prote 99.9 1.5E-23 3.2E-28 187.8 16.6 199 21-257 82-282 (295)
4 TIGR00406 prmA ribosomal prote 99.8 1.2E-18 2.5E-23 156.9 19.5 190 38-257 91-282 (288)
5 KOG2793 Putative N2,N2-dimethy 99.8 4.3E-19 9.2E-24 154.1 15.7 171 94-264 51-231 (248)
6 PRK00517 prmA ribosomal protei 99.8 9.2E-18 2E-22 148.1 21.0 184 38-258 52-238 (250)
7 PF05175 MTS: Methyltransferas 99.8 1.7E-17 3.7E-22 138.1 17.2 136 79-236 1-144 (170)
8 COG3897 Predicted methyltransf 99.7 5.2E-18 1.1E-22 140.4 8.2 130 92-237 53-184 (218)
9 COG2813 RsmC 16S RNA G1207 met 99.7 1.7E-16 3.7E-21 140.6 17.9 166 76-277 125-299 (300)
10 KOG3201 Uncharacterized conser 99.7 7.6E-18 1.7E-22 135.1 5.6 153 97-257 8-165 (201)
11 PRK15001 SAM-dependent 23S rib 99.7 9E-16 1.9E-20 142.1 20.3 178 70-279 189-375 (378)
12 COG4123 Predicted O-methyltran 99.7 8.3E-16 1.8E-20 133.6 18.8 176 77-277 15-212 (248)
13 COG2227 UbiG 2-polyprenyl-3-me 99.7 1.8E-16 3.8E-21 136.0 10.3 109 121-238 58-167 (243)
14 TIGR00537 hemK_rel_arch HemK-r 99.6 1.8E-14 4E-19 120.7 18.6 147 103-274 8-177 (179)
15 PF12847 Methyltransf_18: Meth 99.6 1.2E-15 2.7E-20 117.4 9.4 104 122-232 1-111 (112)
16 PF13847 Methyltransf_31: Meth 99.6 1.1E-14 2.3E-19 118.8 13.4 110 122-238 3-116 (152)
17 KOG1270 Methyltransferases [Co 99.6 1.6E-15 3.5E-20 131.0 8.3 111 121-236 88-199 (282)
18 PRK00107 gidB 16S rRNA methylt 99.6 8.8E-14 1.9E-18 117.4 17.5 123 122-260 45-171 (187)
19 PRK09489 rsmC 16S ribosomal RN 99.6 1.4E-13 3.1E-18 126.5 19.8 163 79-278 166-337 (342)
20 TIGR00138 gidB 16S rRNA methyl 99.6 7.4E-14 1.6E-18 117.4 15.7 125 121-258 41-169 (181)
21 PLN02396 hexaprenyldihydroxybe 99.6 1.3E-14 2.9E-19 132.0 11.6 109 121-236 130-239 (322)
22 PRK11207 tellurite resistance 99.6 9.3E-14 2E-18 118.3 13.9 102 121-231 29-133 (197)
23 PRK11036 putative S-adenosyl-L 99.5 8.8E-14 1.9E-18 123.0 13.5 109 121-235 43-152 (255)
24 PRK14968 putative methyltransf 99.5 6.4E-13 1.4E-17 111.4 17.9 156 100-276 9-187 (188)
25 TIGR00477 tehB tellurite resis 99.5 2.9E-13 6.4E-18 115.1 13.8 101 121-231 29-132 (195)
26 PRK14967 putative methyltransf 99.5 1.6E-12 3.4E-17 112.8 18.4 139 102-257 21-183 (223)
27 PLN02244 tocopherol O-methyltr 99.5 3.3E-13 7.1E-18 124.2 14.1 105 121-232 117-223 (340)
28 PF08241 Methyltransf_11: Meth 99.5 2.1E-13 4.6E-18 101.0 8.8 93 127-230 1-95 (95)
29 PRK12335 tellurite resistance 99.5 6.2E-13 1.3E-17 119.7 13.1 102 121-232 119-223 (287)
30 PF01209 Ubie_methyltran: ubiE 99.5 8.4E-13 1.8E-17 115.2 13.1 109 121-237 46-158 (233)
31 COG2226 UbiE Methylase involve 99.5 1.5E-12 3.2E-17 113.3 13.6 106 122-235 51-159 (238)
32 COG2890 HemK Methylase of poly 99.4 1.1E-11 2.5E-16 110.9 18.3 110 125-244 113-250 (280)
33 PF03848 TehB: Tellurite resis 99.4 1.3E-12 2.8E-17 110.2 11.2 103 120-232 28-133 (192)
34 smart00828 PKS_MT Methyltransf 99.4 4.1E-12 8.9E-17 109.9 14.4 126 124-257 1-143 (224)
35 PLN02233 ubiquinone biosynthes 99.4 4.7E-12 1E-16 112.5 15.1 110 121-235 72-185 (261)
36 PRK15068 tRNA mo(5)U34 methylt 99.4 3.1E-12 6.7E-17 116.9 13.9 105 120-232 120-226 (322)
37 PTZ00098 phosphoethanolamine N 99.4 3.2E-12 7E-17 113.6 13.5 104 121-234 51-158 (263)
38 PRK08287 cobalt-precorrin-6Y C 99.4 1.7E-11 3.7E-16 103.4 17.2 117 121-252 30-150 (187)
39 PF02353 CMAS: Mycolic acid cy 99.4 3.1E-12 6.8E-17 114.1 13.3 119 102-234 46-168 (273)
40 TIGR00452 methyltransferase, p 99.4 3.1E-12 6.8E-17 116.1 13.4 105 120-232 119-225 (314)
41 TIGR02752 MenG_heptapren 2-hep 99.4 4.8E-12 1E-16 110.0 13.7 105 121-233 44-152 (231)
42 PRK15451 tRNA cmo(5)U34 methyl 99.4 3.4E-12 7.4E-17 112.4 12.7 106 121-235 55-167 (247)
43 COG2230 Cfa Cyclopropane fatty 99.4 4.9E-12 1.1E-16 112.1 13.2 107 120-236 70-180 (283)
44 PRK14966 unknown domain/N5-glu 99.4 3.5E-11 7.7E-16 112.2 19.2 140 101-256 236-403 (423)
45 PF13489 Methyltransf_23: Meth 99.4 1.1E-12 2.4E-17 106.8 8.1 100 120-237 20-120 (161)
46 PRK11873 arsM arsenite S-adeno 99.4 6.5E-12 1.4E-16 112.0 13.6 105 121-233 76-184 (272)
47 PF13659 Methyltransf_26: Meth 99.4 9.1E-13 2E-17 102.2 7.1 106 123-233 1-116 (117)
48 PRK00377 cbiT cobalt-precorrin 99.4 2.3E-11 4.9E-16 103.7 16.0 126 120-256 38-168 (198)
49 PRK11783 rlmL 23S rRNA m(2)G24 99.4 5E-12 1.1E-16 126.6 13.8 148 121-276 537-700 (702)
50 PLN02336 phosphoethanolamine N 99.4 7.9E-12 1.7E-16 120.0 14.7 106 121-235 265-372 (475)
51 PF08242 Methyltransf_12: Meth 99.4 1.8E-13 3.9E-18 103.3 2.5 96 127-228 1-99 (99)
52 PRK13168 rumA 23S rRNA m(5)U19 99.4 3.9E-11 8.5E-16 114.3 19.0 146 103-264 282-430 (443)
53 TIGR03704 PrmC_rel_meth putati 99.4 4.7E-11 1E-15 105.4 18.1 142 102-258 69-240 (251)
54 PRK00121 trmB tRNA (guanine-N( 99.4 6.1E-12 1.3E-16 107.5 11.7 126 122-254 40-177 (202)
55 TIGR01983 UbiG ubiquinone bios 99.4 9.9E-12 2.1E-16 107.4 12.8 128 100-234 23-151 (224)
56 PRK00216 ubiE ubiquinone/menaq 99.4 5E-11 1.1E-15 103.5 16.9 105 122-233 51-159 (239)
57 TIGR02469 CbiT precorrin-6Y C5 99.4 4.3E-11 9.3E-16 93.2 14.8 102 121-232 18-122 (124)
58 PRK10258 biotin biosynthesis p 99.4 7.7E-12 1.7E-16 110.2 11.7 100 122-234 42-142 (251)
59 TIGR00080 pimt protein-L-isoas 99.3 1.6E-11 3.5E-16 105.9 13.3 98 121-232 76-177 (215)
60 KOG1499 Protein arginine N-met 99.3 2.5E-12 5.4E-17 115.8 8.2 106 117-229 55-164 (346)
61 PRK13255 thiopurine S-methyltr 99.3 9.9E-11 2.1E-15 101.2 17.6 166 103-278 23-218 (218)
62 TIGR03533 L3_gln_methyl protei 99.3 7E-11 1.5E-15 106.2 17.2 104 122-233 121-252 (284)
63 PRK13944 protein-L-isoaspartat 99.3 2.9E-11 6.4E-16 103.6 14.0 99 121-232 71-173 (205)
64 TIGR03534 RF_mod_PrmC protein- 99.3 5.5E-11 1.2E-15 104.3 16.1 141 100-256 70-239 (251)
65 PRK14103 trans-aconitate 2-met 99.3 8.8E-12 1.9E-16 110.2 10.9 96 121-232 28-126 (255)
66 TIGR00740 methyltransferase, p 99.3 1.3E-11 2.7E-16 108.2 11.7 107 121-236 52-165 (239)
67 PRK05134 bifunctional 3-demeth 99.3 2.3E-11 5.1E-16 105.8 13.2 118 105-234 35-153 (233)
68 TIGR03840 TMPT_Se_Te thiopurin 99.3 8.6E-11 1.9E-15 101.3 16.2 151 102-262 19-191 (213)
69 PLN02490 MPBQ/MSBQ methyltrans 99.3 3.5E-11 7.6E-16 110.2 14.3 126 122-258 113-256 (340)
70 PRK01683 trans-aconitate 2-met 99.3 4.4E-11 9.5E-16 105.8 14.4 98 121-232 30-130 (258)
71 PRK13942 protein-L-isoaspartat 99.3 4E-11 8.7E-16 103.3 13.6 112 103-232 61-176 (212)
72 TIGR02085 meth_trns_rumB 23S r 99.3 1.7E-10 3.8E-15 107.5 18.9 130 121-264 232-362 (374)
73 TIGR00536 hemK_fam HemK family 99.3 1.3E-10 2.9E-15 104.4 17.1 113 124-244 116-256 (284)
74 TIGR02021 BchM-ChlM magnesium 99.3 3E-11 6.6E-16 104.3 12.0 100 121-230 54-156 (219)
75 PRK05031 tRNA (uracil-5-)-meth 99.3 2.3E-10 4.9E-15 106.3 18.5 166 76-265 171-350 (362)
76 PRK15128 23S rRNA m(5)C1962 me 99.3 6E-11 1.3E-15 111.1 14.1 136 121-259 219-370 (396)
77 PRK07402 precorrin-6B methylas 99.3 2.6E-10 5.7E-15 96.8 16.8 131 121-262 39-174 (196)
78 PRK10909 rsmD 16S rRNA m(2)G96 99.3 5.6E-11 1.2E-15 101.2 12.2 107 121-235 52-162 (199)
79 TIGR03587 Pse_Me-ase pseudamin 99.3 2.6E-10 5.7E-15 97.6 16.3 96 121-232 42-142 (204)
80 PRK01544 bifunctional N5-gluta 99.3 2.5E-10 5.5E-15 110.2 18.0 125 122-256 138-291 (506)
81 PRK09328 N5-glutamine S-adenos 99.3 4.9E-10 1.1E-14 99.8 18.4 138 100-252 90-256 (275)
82 TIGR00095 RNA methyltransferas 99.3 4E-11 8.7E-16 101.5 10.8 110 121-234 48-161 (189)
83 PRK00312 pcm protein-L-isoaspa 99.3 1.5E-10 3.2E-15 99.5 14.3 99 121-233 77-176 (212)
84 COG2263 Predicted RNA methylas 99.3 3.5E-10 7.6E-15 93.9 15.6 58 120-183 43-102 (198)
85 PF05401 NodS: Nodulation prot 99.3 2.3E-11 4.9E-16 102.0 8.6 99 124-233 45-147 (201)
86 PRK03522 rumB 23S rRNA methylu 99.2 3.8E-10 8.2E-15 102.9 17.1 130 121-264 172-302 (315)
87 PLN02585 magnesium protoporphy 99.2 1.9E-10 4E-15 104.6 14.8 104 121-232 143-249 (315)
88 PRK11805 N5-glutamine S-adenos 99.2 1.1E-10 2.4E-15 106.0 13.2 102 124-233 135-264 (307)
89 PRK11705 cyclopropane fatty ac 99.2 2.2E-10 4.8E-15 107.0 15.5 99 121-233 166-268 (383)
90 PRK08317 hypothetical protein; 99.2 2.2E-10 4.8E-15 99.1 14.5 103 121-232 18-124 (241)
91 TIGR00091 tRNA (guanine-N(7)-) 99.2 1.4E-10 3E-15 98.5 12.7 126 122-254 16-154 (194)
92 PRK04266 fibrillarin; Provisio 99.2 4E-10 8.6E-15 97.9 15.8 130 120-258 70-210 (226)
93 TIGR02143 trmA_only tRNA (urac 99.2 8.1E-10 1.8E-14 102.2 18.8 165 76-264 162-340 (353)
94 TIGR02716 C20_methyl_CrtF C-20 99.2 1.8E-10 3.9E-15 104.6 14.0 105 121-234 148-256 (306)
95 PF13649 Methyltransf_25: Meth 99.2 1.4E-11 3E-16 93.4 5.4 92 126-226 1-101 (101)
96 TIGR02072 BioC biotin biosynth 99.2 1.2E-10 2.5E-15 101.1 11.3 101 121-233 33-136 (240)
97 TIGR00479 rumA 23S rRNA (uraci 99.2 4.1E-10 8.9E-15 107.0 16.0 144 102-260 276-422 (431)
98 TIGR01177 conserved hypothetic 99.2 3.7E-10 8E-15 103.6 15.2 107 121-236 181-298 (329)
99 PF08003 Methyltransf_9: Prote 99.2 2.6E-10 5.7E-15 101.5 12.5 105 120-232 113-219 (315)
100 PRK05785 hypothetical protein; 99.2 2.2E-10 4.7E-15 99.7 11.6 88 122-225 51-140 (226)
101 COG2242 CobL Precorrin-6B meth 99.2 1.9E-09 4E-14 89.7 16.5 123 120-257 32-160 (187)
102 PRK14901 16S rRNA methyltransf 99.2 2.3E-09 5.1E-14 101.9 19.2 166 100-279 238-434 (434)
103 PTZ00146 fibrillarin; Provisio 99.2 3.8E-09 8.3E-14 94.4 18.5 129 96-235 106-240 (293)
104 PRK14902 16S rRNA methyltransf 99.2 1E-08 2.2E-13 97.8 22.7 142 99-256 235-406 (444)
105 cd02440 AdoMet_MTases S-adenos 99.2 4.2E-10 9E-15 83.2 10.4 100 125-231 1-103 (107)
106 PLN02672 methionine S-methyltr 99.2 1E-09 2.2E-14 113.0 16.4 152 101-259 100-304 (1082)
107 PRK07580 Mg-protoporphyrin IX 99.2 3.3E-10 7.2E-15 98.2 11.2 96 121-226 62-160 (230)
108 PRK10901 16S rRNA methyltransf 99.2 1.5E-08 3.2E-13 96.2 23.4 138 101-254 231-397 (427)
109 COG2518 Pcm Protein-L-isoaspar 99.1 4.8E-10 1E-14 95.1 11.7 100 120-233 70-170 (209)
110 COG4976 Predicted methyltransf 99.1 2.9E-11 6.4E-16 102.8 4.3 133 124-267 127-274 (287)
111 PRK11188 rrmJ 23S rRNA methylt 99.1 1.5E-09 3.2E-14 93.3 14.5 119 121-256 50-187 (209)
112 TIGR01934 MenG_MenH_UbiE ubiqu 99.1 7.7E-10 1.7E-14 95.0 12.6 102 122-233 39-144 (223)
113 KOG4300 Predicted methyltransf 99.1 5.7E-10 1.2E-14 93.6 11.0 117 124-247 78-198 (252)
114 PRK06922 hypothetical protein; 99.1 4E-10 8.6E-15 109.8 11.6 106 121-233 417-538 (677)
115 PLN02336 phosphoethanolamine N 99.1 6E-10 1.3E-14 107.1 12.1 104 121-232 36-142 (475)
116 PRK06202 hypothetical protein; 99.1 1.5E-09 3.2E-14 94.6 13.1 103 121-236 59-170 (232)
117 KOG2904 Predicted methyltransf 99.1 7.3E-09 1.6E-13 90.4 16.7 156 79-249 114-304 (328)
118 KOG1540 Ubiquinone biosynthesi 99.1 2.7E-09 5.7E-14 92.3 13.5 120 120-244 98-227 (296)
119 PLN02781 Probable caffeoyl-CoA 99.1 9.1E-10 2E-14 96.3 10.8 105 121-232 67-178 (234)
120 PF05958 tRNA_U5-meth_tr: tRNA 99.1 7.8E-09 1.7E-13 95.7 17.5 170 74-267 159-342 (352)
121 PLN03075 nicotianamine synthas 99.1 1.8E-09 3.9E-14 96.7 12.5 104 122-232 123-233 (296)
122 KOG1500 Protein arginine N-met 99.1 5.5E-10 1.2E-14 99.8 8.9 148 118-274 173-337 (517)
123 PRK14904 16S rRNA methyltransf 99.1 6.8E-09 1.5E-13 99.0 17.0 140 98-254 233-402 (445)
124 KOG2920 Predicted methyltransf 99.1 7.7E-11 1.7E-15 103.6 3.4 137 95-236 90-238 (282)
125 KOG1271 Methyltransferases [Ge 99.1 1.7E-09 3.7E-14 89.1 11.0 143 102-254 47-201 (227)
126 PRK14903 16S rRNA methyltransf 99.1 1.1E-08 2.5E-13 97.0 17.9 126 121-254 236-391 (431)
127 TIGR00563 rsmB ribosomal RNA s 99.1 1.5E-08 3.4E-13 96.1 18.9 141 99-253 223-392 (426)
128 PRK13943 protein-L-isoaspartat 99.0 3.4E-09 7.3E-14 96.7 13.3 98 121-232 79-180 (322)
129 smart00138 MeTrc Methyltransfe 99.0 1.4E-09 3.1E-14 96.7 10.6 109 122-233 99-243 (264)
130 KOG3191 Predicted N6-DNA-methy 99.0 1.4E-08 3E-13 83.7 14.7 140 123-278 44-209 (209)
131 COG1092 Predicted SAM-dependen 99.0 5.8E-09 1.3E-13 97.0 14.2 141 121-265 216-373 (393)
132 TIGR00438 rrmJ cell division p 99.0 1.1E-08 2.5E-13 86.2 14.6 131 120-267 30-179 (188)
133 PRK04457 spermidine synthase; 99.0 2.5E-09 5.4E-14 95.1 10.8 123 122-252 66-196 (262)
134 smart00650 rADc Ribosomal RNA 99.0 8.2E-09 1.8E-13 85.6 12.6 77 121-208 12-89 (169)
135 TIGR00446 nop2p NOL1/NOP2/sun 99.0 1.9E-08 4.2E-13 89.5 15.7 118 121-246 70-217 (264)
136 PRK14121 tRNA (guanine-N(7)-)- 99.0 3.9E-09 8.4E-14 98.0 11.6 106 122-233 122-236 (390)
137 PRK13256 thiopurine S-methyltr 99.0 4E-08 8.7E-13 85.1 16.9 168 102-277 28-224 (226)
138 KOG2187 tRNA uracil-5-methyltr 99.0 3.2E-09 7E-14 99.8 10.7 143 78-236 349-494 (534)
139 TIGR03438 probable methyltrans 99.0 4.8E-09 1.1E-13 95.1 11.6 108 122-235 63-180 (301)
140 PF01135 PCMT: Protein-L-isoas 99.0 2.2E-09 4.8E-14 92.1 8.5 100 120-233 70-173 (209)
141 PF10672 Methyltrans_SAM: S-ad 99.0 7.6E-10 1.6E-14 99.0 5.5 124 121-248 122-253 (286)
142 PHA03411 putative methyltransf 98.9 2E-08 4.3E-13 89.0 13.4 100 122-235 64-186 (279)
143 KOG1541 Predicted protein carb 98.9 1.4E-08 2.9E-13 86.2 11.6 123 122-256 50-185 (270)
144 PLN02476 O-methyltransferase 98.9 2.4E-08 5.2E-13 89.0 13.2 130 121-257 117-267 (278)
145 COG2265 TrmA SAM-dependent met 98.9 5.6E-08 1.2E-12 91.9 16.3 142 102-258 277-420 (432)
146 PF03602 Cons_hypoth95: Conser 98.9 8.4E-10 1.8E-14 92.9 3.6 110 121-235 41-156 (183)
147 PRK00811 spermidine synthase; 98.9 2.1E-08 4.6E-13 90.1 12.8 129 122-253 76-214 (283)
148 PRK11088 rrmA 23S rRNA methylt 98.9 1.5E-08 3.4E-13 90.4 11.8 93 122-234 85-183 (272)
149 PF07021 MetW: Methionine bios 98.9 1.3E-08 2.9E-13 85.1 10.5 98 121-234 12-111 (193)
150 PF05724 TPMT: Thiopurine S-me 98.9 2.6E-08 5.7E-13 86.1 12.0 169 102-278 22-218 (218)
151 PRK04338 N(2),N(2)-dimethylgua 98.9 1.4E-08 2.9E-13 94.9 10.3 99 123-233 58-159 (382)
152 PRK11727 23S rRNA mA1618 methy 98.8 1.3E-08 2.9E-13 92.5 9.0 83 122-208 114-202 (321)
153 COG4122 Predicted O-methyltran 98.8 3.4E-08 7.3E-13 84.9 10.8 129 121-257 58-207 (219)
154 PHA03412 putative methyltransf 98.8 1.5E-08 3.2E-13 87.9 8.4 93 122-228 49-159 (241)
155 COG4106 Tam Trans-aconitate me 98.8 1.6E-08 3.4E-13 85.6 7.9 98 122-233 30-130 (257)
156 TIGR02081 metW methionine bios 98.8 3.4E-08 7.4E-13 83.7 10.1 90 122-224 13-104 (194)
157 COG0742 N6-adenine-specific me 98.8 4.9E-08 1.1E-12 81.6 10.1 111 120-235 41-157 (187)
158 PF01596 Methyltransf_3: O-met 98.8 1.4E-08 2.9E-13 87.0 6.9 130 121-257 44-194 (205)
159 PRK04148 hypothetical protein; 98.8 2.8E-08 6.1E-13 78.9 7.6 99 105-227 3-103 (134)
160 KOG2899 Predicted methyltransf 98.7 1.4E-07 3E-12 81.2 11.4 113 120-233 56-210 (288)
161 PF02527 GidB: rRNA small subu 98.7 3.7E-07 8E-12 76.8 13.9 121 124-257 50-174 (184)
162 KOG3420 Predicted RNA methylas 98.7 2.3E-08 5E-13 79.5 5.9 76 120-204 46-123 (185)
163 COG1041 Predicted DNA modifica 98.7 3.9E-07 8.5E-12 82.8 14.6 139 103-259 182-331 (347)
164 TIGR00417 speE spermidine synt 98.7 2.2E-07 4.7E-12 83.0 12.7 129 122-253 72-209 (270)
165 COG2519 GCD14 tRNA(1-methylade 98.7 4.6E-07 1E-11 78.8 14.1 114 120-248 92-209 (256)
166 PF00891 Methyltransf_2: O-met 98.7 1.5E-07 3.2E-12 82.4 11.3 97 122-235 100-202 (241)
167 TIGR00478 tly hemolysin TlyA f 98.7 3.6E-08 7.7E-13 85.7 7.2 112 98-230 55-169 (228)
168 PF05185 PRMT5: PRMT5 arginine 98.7 1.4E-07 3.1E-12 89.7 11.7 100 122-229 186-294 (448)
169 PF02475 Met_10: Met-10+ like- 98.7 5.3E-08 1.1E-12 82.9 7.4 96 121-228 100-198 (200)
170 COG0357 GidB Predicted S-adeno 98.7 5.4E-07 1.2E-11 77.3 13.6 124 123-259 68-196 (215)
171 KOG2361 Predicted methyltransf 98.7 6.3E-08 1.4E-12 83.3 7.6 113 125-243 74-194 (264)
172 PRK03612 spermidine synthase; 98.6 4.6E-07 1E-11 88.1 13.0 132 122-255 297-441 (521)
173 KOG3010 Methyltransferase [Gen 98.6 5.2E-08 1.1E-12 83.8 5.6 97 124-228 35-132 (261)
174 PLN02589 caffeoyl-CoA O-methyl 98.6 2.4E-07 5.2E-12 81.5 9.8 104 121-231 78-189 (247)
175 TIGR00308 TRM1 tRNA(guanine-26 98.6 1.4E-07 3.1E-12 87.7 8.8 99 124-233 46-148 (374)
176 PF06080 DUF938: Protein of un 98.6 4.5E-07 9.8E-12 76.9 10.0 107 125-235 28-144 (204)
177 PTZ00338 dimethyladenosine tra 98.6 1.9E-06 4.1E-11 77.8 14.6 79 121-209 35-114 (294)
178 PRK01581 speE spermidine synth 98.5 1.2E-06 2.6E-11 80.6 12.4 131 121-256 149-295 (374)
179 PLN02366 spermidine synthase 98.5 1.6E-06 3.5E-11 78.7 12.7 128 121-251 90-227 (308)
180 COG2520 Predicted methyltransf 98.5 3.4E-06 7.4E-11 77.1 14.5 107 121-238 187-295 (341)
181 PF05219 DREV: DREV methyltran 98.5 1.9E-06 4E-11 75.5 11.7 122 121-259 93-241 (265)
182 PRK14896 ksgA 16S ribosomal RN 98.5 9.9E-07 2.1E-11 78.2 10.2 74 121-206 28-102 (258)
183 PF08704 GCD14: tRNA methyltra 98.5 1.8E-06 4E-11 75.8 11.4 121 120-252 38-165 (247)
184 PRK00274 ksgA 16S ribosomal RN 98.5 7.7E-07 1.7E-11 79.6 8.8 76 121-208 41-117 (272)
185 PF05148 Methyltransf_8: Hypot 98.4 3.8E-06 8.1E-11 71.3 12.2 142 99-279 54-199 (219)
186 KOG1661 Protein-L-isoaspartate 98.4 3.8E-06 8.3E-11 71.0 10.2 103 120-231 80-192 (237)
187 PF03291 Pox_MCEL: mRNA cappin 98.4 2.1E-06 4.7E-11 78.6 9.5 131 99-233 43-187 (331)
188 PF02390 Methyltransf_4: Putat 98.3 1.7E-06 3.6E-11 73.6 7.8 124 124-254 19-156 (195)
189 PRK11933 yebU rRNA (cytosine-C 98.3 2.4E-05 5.1E-10 75.0 15.6 135 99-246 96-260 (470)
190 TIGR00755 ksgA dimethyladenosi 98.3 2.8E-05 6.1E-10 68.7 14.3 56 121-183 28-84 (253)
191 PF01170 UPF0020: Putative RNA 98.2 3.9E-06 8.5E-11 70.4 7.8 104 121-233 27-151 (179)
192 PF09445 Methyltransf_15: RNA 98.2 1.7E-06 3.8E-11 71.1 5.4 114 124-246 1-131 (163)
193 COG4076 Predicted RNA methylas 98.2 2.7E-06 5.9E-11 70.7 5.6 99 121-229 31-132 (252)
194 KOG3045 Predicted RNA methylas 98.2 3.6E-05 7.7E-10 67.2 12.3 126 121-279 179-305 (325)
195 COG2521 Predicted archaeal met 98.2 4.5E-06 9.7E-11 71.7 6.7 133 121-257 133-277 (287)
196 PLN02232 ubiquinone biosynthes 98.1 2E-05 4.4E-10 64.7 9.9 84 148-236 1-85 (160)
197 KOG1975 mRNA cap methyltransfe 98.1 8.4E-06 1.8E-10 73.1 7.8 114 121-234 116-239 (389)
198 COG0220 Predicted S-adenosylme 98.1 1.7E-05 3.7E-10 68.9 9.6 105 124-233 50-165 (227)
199 PLN02823 spermine synthase 98.1 3.1E-05 6.7E-10 71.2 11.7 127 122-253 103-245 (336)
200 PF05971 Methyltransf_10: Prot 98.1 2.6E-05 5.7E-10 70.1 10.9 83 123-209 103-191 (299)
201 PF01861 DUF43: Protein of unk 98.1 0.0002 4.4E-09 62.1 15.8 148 96-257 23-177 (243)
202 PRK10611 chemotaxis methyltran 98.1 7.3E-06 1.6E-10 73.6 6.7 107 124-232 117-262 (287)
203 PF02384 N6_Mtase: N-6 DNA Met 98.1 6.5E-05 1.4E-09 68.2 12.6 151 121-279 45-234 (311)
204 PF05891 Methyltransf_PK: AdoM 98.0 3.4E-05 7.3E-10 66.0 9.5 129 121-257 54-200 (218)
205 COG0144 Sun tRNA and rRNA cyto 98.0 0.00051 1.1E-08 63.8 18.0 122 120-246 154-306 (355)
206 KOG2497 Predicted methyltransf 98.0 2E-06 4.3E-11 75.9 1.5 141 77-223 49-191 (262)
207 PF01739 CheR: CheR methyltran 98.0 6.2E-06 1.3E-10 70.1 4.5 108 123-233 32-176 (196)
208 COG3963 Phospholipid N-methylt 98.0 5.7E-05 1.2E-09 61.8 9.4 125 94-233 25-158 (194)
209 PRK11783 rlmL 23S rRNA m(2)G24 98.0 5.4E-05 1.2E-09 76.3 11.3 106 122-232 190-347 (702)
210 COG0116 Predicted N6-adenine-s 97.9 0.00011 2.5E-09 67.8 11.3 104 121-232 190-344 (381)
211 TIGR02987 met_A_Alw26 type II 97.9 0.00042 9.2E-09 67.6 16.1 151 122-277 31-246 (524)
212 PRK00536 speE spermidine synth 97.9 0.00024 5.2E-09 63.0 12.6 120 121-252 71-193 (262)
213 KOG1501 Arginine N-methyltrans 97.9 2.7E-05 5.8E-10 72.4 6.6 97 125-227 69-170 (636)
214 COG1352 CheR Methylase of chem 97.9 4.4E-05 9.5E-10 67.9 7.6 110 123-235 97-244 (268)
215 PF04816 DUF633: Family of unk 97.9 0.0002 4.4E-09 61.3 11.4 118 126-255 1-121 (205)
216 TIGR01444 fkbM_fam methyltrans 97.9 4.7E-05 1E-09 60.8 7.1 56 125-185 1-59 (143)
217 PF12147 Methyltransf_20: Puta 97.9 0.00019 4.1E-09 63.9 11.1 112 123-238 136-255 (311)
218 PHA01634 hypothetical protein 97.8 0.00012 2.6E-09 57.2 7.2 71 119-200 25-97 (156)
219 PF11968 DUF3321: Putative met 97.7 0.00076 1.6E-08 57.7 11.8 135 100-257 29-180 (219)
220 PF01564 Spermine_synth: Sperm 97.7 0.00071 1.5E-08 59.6 11.9 142 122-267 76-227 (246)
221 COG0293 FtsJ 23S rRNA methylas 97.7 0.0021 4.5E-08 54.8 14.1 138 120-278 43-200 (205)
222 PF13679 Methyltransf_32: Meth 97.7 0.00026 5.7E-09 56.9 8.4 47 121-167 24-77 (141)
223 PRK01544 bifunctional N5-gluta 97.7 0.00027 6E-09 68.6 9.8 106 122-233 347-463 (506)
224 COG0500 SmtA SAM-dependent met 97.6 0.0016 3.4E-08 50.3 12.5 103 126-236 52-159 (257)
225 PF08123 DOT1: Histone methyla 97.6 0.00012 2.7E-09 62.6 6.5 102 121-229 41-155 (205)
226 PF03141 Methyltransf_29: Puta 97.6 0.00013 2.7E-09 69.4 6.8 125 96-236 91-223 (506)
227 PRK11760 putative 23S rRNA C24 97.6 0.001 2.2E-08 60.9 12.4 111 120-248 209-324 (357)
228 COG1189 Predicted rRNA methyla 97.6 0.0045 9.7E-08 53.7 15.4 146 100-264 61-230 (245)
229 KOG1709 Guanidinoacetate methy 97.5 0.00039 8.4E-09 59.3 7.9 109 121-237 100-211 (271)
230 KOG2940 Predicted methyltransf 97.5 8.7E-05 1.9E-09 63.7 3.7 100 122-231 72-173 (325)
231 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.5 0.00038 8.2E-09 61.5 7.7 139 120-258 54-239 (256)
232 PF09243 Rsm22: Mitochondrial 97.5 0.002 4.3E-08 57.7 12.1 103 120-233 31-140 (274)
233 PF01728 FtsJ: FtsJ-like methy 97.4 0.00026 5.7E-09 59.1 5.5 136 102-253 5-158 (181)
234 PF07942 N2227: N2227-like pro 97.4 0.0038 8.2E-08 55.6 12.2 135 122-258 56-242 (270)
235 KOG0820 Ribosomal RNA adenine 97.3 0.0014 3E-08 57.8 9.2 93 96-202 37-130 (315)
236 COG0421 SpeE Spermidine syntha 97.3 0.0017 3.7E-08 58.2 9.7 104 124-231 78-189 (282)
237 PF01269 Fibrillarin: Fibrilla 97.3 0.023 4.9E-07 49.0 15.6 150 95-255 46-209 (229)
238 COG0030 KsgA Dimethyladenosine 97.3 0.0022 4.8E-08 56.7 9.5 76 121-207 29-106 (259)
239 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.2 0.0019 4.1E-08 58.1 9.4 147 97-257 67-247 (283)
240 PF00398 RrnaAD: Ribosomal RNA 97.2 0.0013 2.7E-08 58.5 8.0 108 103-224 15-123 (262)
241 KOG1663 O-methyltransferase [S 97.2 0.0034 7.3E-08 54.1 9.6 106 120-232 71-183 (237)
242 TIGR03439 methyl_EasF probable 97.1 0.0046 9.9E-08 56.5 10.3 109 121-234 75-199 (319)
243 COG2384 Predicted SAM-dependen 97.1 0.031 6.6E-07 48.0 14.2 120 122-253 16-138 (226)
244 PRK10742 putative methyltransf 97.0 0.0033 7.1E-08 55.1 8.2 86 122-210 86-178 (250)
245 PRK00050 16S rRNA m(4)C1402 me 97.0 0.0018 4E-08 58.4 6.3 45 121-165 18-66 (296)
246 PF03059 NAS: Nicotianamine sy 96.9 0.01 2.3E-07 53.0 10.8 102 124-232 122-230 (276)
247 PF06962 rRNA_methylase: Putat 96.9 0.011 2.4E-07 47.4 9.5 108 146-258 1-125 (140)
248 KOG2730 Methylase [General fun 96.7 0.0015 3.3E-08 55.9 3.4 62 122-187 94-156 (263)
249 KOG3987 Uncharacterized conser 96.7 0.00049 1.1E-08 58.4 0.5 94 122-232 112-207 (288)
250 KOG1122 tRNA and rRNA cytosine 96.7 0.049 1.1E-06 51.0 13.4 106 121-232 240-371 (460)
251 COG1889 NOP1 Fibrillarin-like 96.6 0.21 4.5E-06 42.5 15.3 143 97-256 51-212 (231)
252 COG4262 Predicted spermidine s 96.6 0.053 1.1E-06 50.0 12.6 171 69-256 246-434 (508)
253 KOG0024 Sorbitol dehydrogenase 96.4 0.0057 1.2E-07 55.4 5.3 102 121-232 168-273 (354)
254 PF02005 TRM: N2,N2-dimethylgu 96.4 0.0077 1.7E-07 56.3 6.3 103 123-234 50-156 (377)
255 cd00315 Cyt_C5_DNA_methylase C 96.3 0.1 2.2E-06 46.7 13.1 40 125-164 2-43 (275)
256 COG1867 TRM1 N2,N2-dimethylgua 96.1 0.025 5.4E-07 52.1 8.1 99 123-234 53-156 (380)
257 KOG1269 SAM-dependent methyltr 96.1 0.02 4.3E-07 53.3 7.5 103 121-231 109-214 (364)
258 KOG2915 tRNA(1-methyladenosine 96.1 0.2 4.4E-06 44.5 13.0 103 120-232 103-209 (314)
259 KOG3178 Hydroxyindole-O-methyl 96.1 0.028 6E-07 51.4 8.0 94 124-233 179-276 (342)
260 PF13578 Methyltransf_24: Meth 96.0 0.00069 1.5E-08 51.3 -2.4 98 127-231 1-104 (106)
261 KOG2078 tRNA modification enzy 95.6 0.0071 1.5E-07 56.5 2.2 83 94-184 226-309 (495)
262 PRK09424 pntA NAD(P) transhydr 95.5 0.12 2.6E-06 50.2 10.5 105 121-232 163-285 (509)
263 COG3129 Predicted SAM-dependen 95.5 0.042 9E-07 47.6 6.5 79 122-207 78-165 (292)
264 PF07757 AdoMet_MTase: Predict 95.5 0.021 4.5E-07 43.5 4.2 48 105-152 41-88 (112)
265 COG5459 Predicted rRNA methyla 95.5 0.019 4E-07 52.6 4.5 106 120-234 111-227 (484)
266 PF01555 N6_N4_Mtase: DNA meth 95.5 0.045 9.7E-07 46.6 6.8 54 103-161 177-231 (231)
267 PF03141 Methyltransf_29: Puta 95.5 0.081 1.7E-06 50.7 8.8 98 124-233 367-468 (506)
268 COG1568 Predicted methyltransf 95.4 0.075 1.6E-06 47.3 7.8 104 120-231 150-259 (354)
269 KOG4589 Cell division protein 95.3 0.55 1.2E-05 39.6 12.1 120 120-256 67-207 (232)
270 KOG2798 Putative trehalase [Ca 95.2 0.23 4.9E-06 45.0 10.2 113 122-234 150-298 (369)
271 KOG4058 Uncharacterized conser 95.2 0.087 1.9E-06 42.6 6.8 97 123-231 73-171 (199)
272 COG1063 Tdh Threonine dehydrog 95.0 0.14 3.1E-06 47.3 8.9 100 121-234 167-271 (350)
273 KOG2671 Putative RNA methylase 94.9 0.072 1.6E-06 48.7 6.4 109 121-235 207-357 (421)
274 PRK11524 putative methyltransf 94.9 0.099 2.1E-06 47.0 7.4 45 121-165 207-252 (284)
275 KOG3115 Methyltransferase-like 94.8 0.15 3.3E-06 43.4 7.5 111 123-233 61-184 (249)
276 PLN02668 indole-3-acetate carb 94.4 0.14 3E-06 48.0 7.3 90 123-213 64-180 (386)
277 COG1064 AdhP Zn-dependent alco 94.3 0.28 6.1E-06 45.1 8.8 94 121-234 165-261 (339)
278 PRK13699 putative methylase; P 94.1 0.23 4.9E-06 43.2 7.5 46 121-166 162-208 (227)
279 KOG2352 Predicted spermine/spe 94.1 0.23 4.9E-06 47.5 7.9 96 125-230 51-159 (482)
280 KOG1331 Predicted methyltransf 94.1 0.054 1.2E-06 48.3 3.5 112 95-232 28-143 (293)
281 PRK09880 L-idonate 5-dehydroge 93.9 0.52 1.1E-05 43.1 10.0 96 121-233 168-267 (343)
282 PF03492 Methyltransf_7: SAM d 93.9 0.3 6.5E-06 45.0 8.3 110 123-237 17-188 (334)
283 KOG1227 Putative methyltransfe 93.6 0.065 1.4E-06 48.1 3.3 72 98-169 168-244 (351)
284 PF11599 AviRa: RRNA methyltra 93.4 0.29 6.3E-06 42.0 6.7 43 124-166 53-100 (246)
285 PF04672 Methyltransf_19: S-ad 93.2 0.47 1E-05 42.2 8.0 107 124-236 70-194 (267)
286 KOG1596 Fibrillarin and relate 93.1 2.4 5.1E-05 37.3 11.8 125 94-234 128-263 (317)
287 TIGR00027 mthyl_TIGR00027 meth 92.9 0.78 1.7E-05 40.7 9.1 129 102-233 62-198 (260)
288 TIGR02822 adh_fam_2 zinc-bindi 92.9 0.81 1.8E-05 41.7 9.5 89 121-233 164-255 (329)
289 TIGR01202 bchC 2-desacetyl-2-h 92.6 0.69 1.5E-05 41.7 8.5 86 121-233 143-232 (308)
290 cd08283 FDH_like_1 Glutathione 92.5 0.32 6.9E-06 45.4 6.4 104 121-232 183-306 (386)
291 PF07091 FmrO: Ribosomal RNA m 92.4 0.47 1E-05 41.7 6.9 124 122-257 105-243 (251)
292 COG1255 Uncharacterized protei 92.4 0.57 1.2E-05 36.2 6.4 87 122-231 13-101 (129)
293 cd08230 glucose_DH Glucose deh 92.4 0.78 1.7E-05 42.1 8.7 93 121-233 171-270 (355)
294 PF04445 SAM_MT: Putative SAM- 91.8 0.48 1E-05 41.4 6.1 81 125-208 78-163 (234)
295 PRK15001 SAM-dependent 23S rib 91.8 4 8.7E-05 38.3 12.7 119 97-236 25-146 (378)
296 cd08254 hydroxyacyl_CoA_DH 6-h 91.6 0.57 1.2E-05 42.2 6.8 97 121-232 164-263 (338)
297 PF03686 UPF0146: Uncharacteri 91.5 0.49 1.1E-05 37.2 5.3 43 105-154 3-47 (127)
298 TIGR03451 mycoS_dep_FDH mycoth 91.4 0.53 1.2E-05 43.3 6.5 99 121-233 175-277 (358)
299 cd08237 ribitol-5-phosphate_DH 91.3 1.1 2.3E-05 41.1 8.3 90 121-232 162-256 (341)
300 PF04989 CmcI: Cephalosporin h 91.1 4.2 9.1E-05 34.8 11.0 107 121-233 31-148 (206)
301 KOG2198 tRNA cytosine-5-methyl 91.1 7.6 0.00017 36.1 13.4 132 121-257 154-325 (375)
302 cd08281 liver_ADH_like1 Zinc-d 91.1 0.6 1.3E-05 43.2 6.5 97 121-232 190-290 (371)
303 COG2961 ComJ Protein involved 90.9 6.9 0.00015 34.5 12.2 141 97-249 65-212 (279)
304 PF10237 N6-adenineMlase: Prob 90.8 5.3 0.00011 32.9 11.0 117 101-238 10-129 (162)
305 TIGR03366 HpnZ_proposed putati 90.7 1 2.3E-05 39.9 7.5 97 121-233 119-219 (280)
306 KOG1253 tRNA methyltransferase 90.0 0.29 6.3E-06 46.8 3.4 106 121-234 108-218 (525)
307 PF00107 ADH_zinc_N: Zinc-bind 89.8 0.12 2.6E-06 40.0 0.6 85 132-235 1-92 (130)
308 PF00145 DNA_methylase: C-5 cy 89.6 0.75 1.6E-05 41.4 5.7 116 125-256 2-140 (335)
309 PLN02740 Alcohol dehydrogenase 89.3 1.1 2.5E-05 41.6 6.8 42 120-161 196-241 (381)
310 TIGR00561 pntA NAD(P) transhyd 88.8 3 6.4E-05 40.7 9.4 97 121-229 162-281 (511)
311 cd05188 MDR Medium chain reduc 88.4 1.3 2.8E-05 38.1 6.2 94 121-233 133-233 (271)
312 COG0270 Dcm Site-specific DNA 87.7 1.2 2.6E-05 40.9 5.7 43 123-165 3-47 (328)
313 PRK05708 2-dehydropantoate 2-r 87.7 4 8.7E-05 36.9 9.1 99 124-232 3-104 (305)
314 KOG2651 rRNA adenine N-6-methy 87.6 2.2 4.8E-05 39.8 7.2 33 123-155 154-187 (476)
315 cd08239 THR_DH_like L-threonin 87.4 1.6 3.6E-05 39.5 6.4 93 121-232 162-262 (339)
316 PF03721 UDPG_MGDP_dh_N: UDP-g 87.0 4.5 9.7E-05 33.9 8.4 101 125-236 2-124 (185)
317 TIGR03201 dearomat_had 6-hydro 86.9 2.5 5.5E-05 38.7 7.4 40 121-160 165-207 (349)
318 PF02636 Methyltransf_28: Puta 86.8 1.4 3.1E-05 38.6 5.5 59 106-164 2-71 (252)
319 cd08285 NADP_ADH NADP(H)-depen 86.5 2.1 4.5E-05 39.1 6.7 97 121-231 165-265 (351)
320 PRK05786 fabG 3-ketoacyl-(acyl 86.3 11 0.00024 31.9 10.8 104 121-232 3-135 (238)
321 PLN02827 Alcohol dehydrogenase 86.2 2.4 5.1E-05 39.5 6.9 98 120-232 191-295 (378)
322 cd05278 FDH_like Formaldehyde 85.5 3 6.5E-05 37.7 7.1 97 121-231 166-266 (347)
323 PF02086 MethyltransfD12: D12 85.3 1.4 3.1E-05 38.4 4.8 48 106-157 8-56 (260)
324 PRK10309 galactitol-1-phosphat 84.3 3.2 7E-05 37.8 6.8 98 121-233 159-261 (347)
325 PF02737 3HCDH_N: 3-hydroxyacy 84.3 2.5 5.5E-05 35.2 5.5 95 126-229 2-111 (180)
326 KOG2912 Predicted DNA methylas 84.2 1.9 4.1E-05 39.4 4.9 75 127-207 107-190 (419)
327 TIGR00675 dcm DNA-methyltransf 83.3 2 4.3E-05 39.2 4.8 39 126-164 1-41 (315)
328 COG3392 Adenine-specific DNA m 83.3 2.4 5.2E-05 37.6 5.0 60 103-162 7-67 (330)
329 COG3315 O-Methyltransferase in 83.1 5.7 0.00012 36.0 7.7 128 102-233 73-210 (297)
330 COG0286 HsdM Type I restrictio 83.1 18 0.00038 35.3 11.5 48 122-169 186-240 (489)
331 KOG3924 Putative protein methy 82.9 3.1 6.7E-05 39.0 5.9 114 121-235 191-311 (419)
332 PF04378 RsmJ: Ribosomal RNA s 82.9 2.2 4.8E-05 37.5 4.8 111 132-249 65-181 (245)
333 TIGR00006 S-adenosyl-methyltra 82.7 5.3 0.00012 36.3 7.3 45 121-165 19-66 (305)
334 PRK11730 fadB multifunctional 82.6 4.1 9E-05 41.5 7.3 96 124-228 314-424 (715)
335 cd08233 butanediol_DH_like (2R 82.4 4.3 9.2E-05 37.0 6.8 99 121-233 171-273 (351)
336 PLN03154 putative allyl alcoho 82.3 14 0.0003 33.9 10.1 97 121-232 157-258 (348)
337 cd08255 2-desacetyl-2-hydroxye 82.3 10 0.00022 33.0 9.0 92 120-232 95-190 (277)
338 PLN02586 probable cinnamyl alc 82.3 7.2 0.00016 36.0 8.3 93 121-232 182-278 (360)
339 PF06859 Bin3: Bicoid-interact 81.8 0.48 1E-05 36.3 0.2 40 195-234 1-46 (110)
340 KOG1201 Hydroxysteroid 17-beta 81.7 6.2 0.00013 35.7 7.2 79 119-204 34-123 (300)
341 COG1893 ApbA Ketopantoate redu 81.0 11 0.00024 34.3 8.8 98 125-233 2-102 (307)
342 KOG0725 Reductases with broad 80.8 31 0.00068 30.7 11.5 83 120-205 5-99 (270)
343 PLN02178 cinnamyl-alcohol dehy 80.6 9.8 0.00021 35.4 8.6 91 122-232 178-273 (375)
344 KOG2539 Mitochondrial/chloropl 80.5 2.8 6E-05 40.1 4.7 110 120-233 198-316 (491)
345 cd08300 alcohol_DH_class_III c 80.3 6.3 0.00014 36.3 7.2 40 121-160 185-228 (368)
346 cd08232 idonate-5-DH L-idonate 80.1 18 0.00038 32.6 10.0 94 122-232 165-262 (339)
347 PRK08293 3-hydroxybutyryl-CoA 79.9 15 0.00033 32.7 9.3 97 124-228 4-116 (287)
348 PF05206 TRM13: Methyltransfer 79.6 3.2 6.9E-05 36.9 4.6 32 121-152 17-55 (259)
349 cd08242 MDR_like Medium chain 79.4 25 0.00054 31.3 10.6 85 121-230 154-243 (319)
350 PF03269 DUF268: Caenorhabditi 79.3 9 0.00019 31.6 6.7 120 123-256 2-143 (177)
351 PRK07819 3-hydroxybutyryl-CoA 78.7 8 0.00017 34.7 7.1 104 125-233 7-121 (286)
352 cd08261 Zn_ADH7 Alcohol dehydr 78.3 7.8 0.00017 34.9 7.0 98 120-231 157-257 (337)
353 PF10354 DUF2431: Domain of un 78.3 29 0.00062 28.6 9.7 64 192-256 72-150 (166)
354 cd08286 FDH_like_ADH2 formalde 78.2 8.7 0.00019 34.8 7.3 97 121-231 165-265 (345)
355 COG1748 LYS9 Saccharopine dehy 78.1 4.5 9.8E-05 38.0 5.4 74 124-206 2-79 (389)
356 PRK07326 short chain dehydroge 77.9 21 0.00045 30.2 9.2 77 121-205 4-92 (237)
357 TIGR02437 FadB fatty oxidation 77.9 6.9 0.00015 39.9 7.1 96 124-228 314-424 (714)
358 PRK07530 3-hydroxybutyryl-CoA 77.7 7.6 0.00016 34.7 6.7 97 124-229 5-116 (292)
359 PF07279 DUF1442: Protein of u 77.6 40 0.00087 29.1 10.5 103 121-235 40-151 (218)
360 PRK08703 short chain dehydroge 77.6 15 0.00033 31.2 8.3 43 121-164 4-51 (239)
361 cd05285 sorbitol_DH Sorbitol d 77.4 7.6 0.00017 35.2 6.7 99 120-232 160-265 (343)
362 COG1565 Uncharacterized conser 76.9 12 0.00026 34.8 7.6 62 103-165 59-130 (370)
363 TIGR02825 B4_12hDH leukotriene 76.6 11 0.00025 33.8 7.6 96 121-232 137-237 (325)
364 PRK09260 3-hydroxybutyryl-CoA 76.4 12 0.00025 33.4 7.5 98 125-230 3-115 (288)
365 cd08238 sorbose_phosphate_red 76.3 11 0.00023 35.5 7.5 42 121-162 174-222 (410)
366 PRK11154 fadJ multifunctional 75.9 9.4 0.0002 38.9 7.4 96 124-228 310-421 (708)
367 cd08245 CAD Cinnamyl alcohol d 75.7 28 0.00061 31.1 9.9 93 121-232 161-256 (330)
368 PLN02514 cinnamyl-alcohol dehy 75.0 17 0.00037 33.3 8.4 93 121-232 179-275 (357)
369 TIGR00518 alaDH alanine dehydr 75.0 5.7 0.00012 37.1 5.2 39 121-159 165-206 (370)
370 PRK12548 shikimate 5-dehydroge 75.0 12 0.00027 33.5 7.2 31 121-152 124-158 (289)
371 PF11312 DUF3115: Protein of u 74.7 4.6 0.0001 36.7 4.3 112 123-234 87-244 (315)
372 cd08265 Zn_ADH3 Alcohol dehydr 74.6 11 0.00024 35.0 7.1 98 121-231 202-306 (384)
373 COG1004 Ugd Predicted UDP-gluc 74.4 4.9 0.00011 37.8 4.5 36 125-160 2-40 (414)
374 cd08293 PTGR2 Prostaglandin re 74.2 7.3 0.00016 35.2 5.7 94 124-232 156-254 (345)
375 TIGR02441 fa_ox_alpha_mit fatt 74.0 6.4 0.00014 40.3 5.7 96 124-228 336-446 (737)
376 PRK08324 short chain dehydroge 73.9 23 0.00051 35.8 9.7 77 121-205 420-508 (681)
377 PLN03209 translocon at the inn 73.8 40 0.00086 33.6 10.8 84 120-204 77-168 (576)
378 PRK13699 putative methylase; P 73.7 15 0.00033 31.8 7.2 42 211-255 51-93 (227)
379 COG0686 Ald Alanine dehydrogen 73.4 10 0.00022 34.7 6.1 115 102-230 141-266 (371)
380 TIGR02354 thiF_fam2 thiamine b 72.9 34 0.00074 28.9 9.1 34 120-153 18-54 (200)
381 cd00401 AdoHcyase S-adenosyl-L 72.7 7.1 0.00015 37.1 5.2 89 120-234 199-291 (413)
382 cd08240 6_hydroxyhexanoate_dh_ 72.5 13 0.00027 33.8 6.8 95 122-231 175-273 (350)
383 cd08231 MDR_TM0436_like Hypoth 72.4 8 0.00017 35.4 5.5 97 122-232 177-280 (361)
384 COG0541 Ffh Signal recognition 72.4 31 0.00068 32.9 9.3 95 136-238 120-227 (451)
385 PRK07066 3-hydroxybutyryl-CoA 72.3 15 0.00033 33.6 7.2 95 124-226 8-113 (321)
386 PRK06249 2-dehydropantoate 2-r 72.3 18 0.00039 32.7 7.7 98 123-231 5-105 (313)
387 TIGR00692 tdh L-threonine 3-de 72.2 15 0.00032 33.3 7.2 99 121-233 160-262 (340)
388 PRK06139 short chain dehydroge 72.0 13 0.00028 34.0 6.7 79 121-205 5-94 (330)
389 PRK10458 DNA cytosine methylas 72.0 8.2 0.00018 37.3 5.6 41 123-163 88-130 (467)
390 cd00755 YgdL_like Family of ac 71.9 13 0.00028 32.3 6.4 33 121-153 9-44 (231)
391 COG3510 CmcI Cephalosporin hyd 71.6 57 0.0012 27.9 9.7 121 121-255 68-218 (237)
392 cd08298 CAD2 Cinnamyl alcohol 71.6 60 0.0013 28.9 11.0 86 121-232 166-256 (329)
393 cd08278 benzyl_alcohol_DH Benz 71.5 10 0.00022 34.9 6.1 93 121-232 185-285 (365)
394 PRK07109 short chain dehydroge 71.4 49 0.0011 30.1 10.4 78 121-205 6-95 (334)
395 cd08294 leukotriene_B4_DH_like 71.2 12 0.00027 33.3 6.4 96 121-232 142-241 (329)
396 cd08296 CAD_like Cinnamyl alco 71.2 29 0.00063 31.2 8.9 95 121-232 162-259 (333)
397 PRK06701 short chain dehydroge 70.9 49 0.0011 29.3 10.1 78 120-204 43-133 (290)
398 COG1062 AdhC Zn-dependent alco 70.8 8.1 0.00018 35.7 4.9 41 121-161 184-228 (366)
399 COG0275 Predicted S-adenosylme 70.6 85 0.0018 28.6 12.9 47 121-167 22-72 (314)
400 cd08234 threonine_DH_like L-th 70.4 15 0.00033 32.8 6.8 93 121-232 158-257 (334)
401 PRK06522 2-dehydropantoate 2-r 70.1 51 0.0011 29.2 10.1 96 125-232 2-100 (304)
402 TIGR02819 fdhA_non_GSH formald 69.9 35 0.00077 31.9 9.3 104 121-233 184-300 (393)
403 PF06460 NSP13: Coronavirus NS 69.8 60 0.0013 29.0 9.8 125 105-256 47-190 (299)
404 PRK08265 short chain dehydroge 69.0 60 0.0013 28.0 10.1 75 121-205 4-90 (261)
405 COG0863 DNA modification methy 68.9 20 0.00042 31.8 7.1 48 120-167 220-268 (302)
406 PRK11524 putative methyltransf 67.7 10 0.00022 34.0 4.9 25 211-235 59-83 (284)
407 PRK07806 short chain dehydroge 67.7 68 0.0015 27.2 10.1 104 121-231 4-133 (248)
408 PRK05396 tdh L-threonine 3-deh 67.6 23 0.00049 32.0 7.4 98 121-232 162-263 (341)
409 PRK08339 short chain dehydroge 67.3 37 0.00079 29.6 8.4 79 121-204 6-94 (263)
410 cd05281 TDH Threonine dehydrog 67.0 30 0.00064 31.3 8.0 97 121-232 162-262 (341)
411 cd08291 ETR_like_1 2-enoyl thi 66.8 21 0.00045 32.0 6.9 40 122-161 142-186 (324)
412 PRK08267 short chain dehydroge 66.6 53 0.0011 28.2 9.3 73 124-205 2-87 (260)
413 cd01492 Aos1_SUMO Ubiquitin ac 66.6 29 0.00062 29.3 7.3 33 121-153 19-54 (197)
414 KOG2352 Predicted spermine/spe 66.4 7.8 0.00017 37.3 4.1 123 123-249 296-433 (482)
415 cd08263 Zn_ADH10 Alcohol dehyd 66.2 19 0.00042 32.9 6.7 97 121-231 186-286 (367)
416 COG0677 WecC UDP-N-acetyl-D-ma 66.1 27 0.00058 33.0 7.4 101 124-234 10-130 (436)
417 KOG3350 Uncharacterized conser 65.7 25 0.00054 29.5 6.3 61 177-237 116-177 (217)
418 COG4798 Predicted methyltransf 65.7 21 0.00046 30.5 6.1 27 208-234 142-168 (238)
419 PF05050 Methyltransf_21: Meth 65.7 14 0.00031 29.2 5.1 41 128-168 1-50 (167)
420 PRK07063 short chain dehydroge 65.7 36 0.00079 29.2 8.0 80 121-205 5-96 (260)
421 PRK08644 thiamine biosynthesis 65.6 41 0.0009 28.7 8.2 34 120-153 25-61 (212)
422 PRK06130 3-hydroxybutyryl-CoA 65.6 50 0.0011 29.7 9.1 97 124-228 5-111 (311)
423 TIGR02818 adh_III_F_hyde S-(hy 65.1 13 0.00028 34.3 5.3 41 121-161 184-228 (368)
424 PRK06181 short chain dehydroge 65.0 53 0.0011 28.2 8.9 75 124-205 2-88 (263)
425 cd08295 double_bond_reductase_ 64.3 26 0.00057 31.6 7.1 98 120-232 149-251 (338)
426 PRK06940 short chain dehydroge 64.3 78 0.0017 27.7 10.0 75 124-206 3-87 (275)
427 cd05284 arabinose_DH_like D-ar 64.1 24 0.00053 31.6 6.9 96 121-231 166-265 (340)
428 KOG1099 SAM-dependent methyltr 64.0 15 0.00033 32.2 5.0 102 120-237 38-167 (294)
429 cd08284 FDH_like_2 Glutathione 63.9 28 0.0006 31.3 7.2 94 121-231 166-265 (344)
430 PRK05867 short chain dehydroge 63.8 37 0.00081 29.1 7.7 80 121-206 7-97 (253)
431 COG1179 Dinucleotide-utilizing 63.8 7.1 0.00015 34.3 3.0 98 121-221 28-145 (263)
432 PLN02989 cinnamyl-alcohol dehy 63.3 72 0.0016 28.5 9.8 30 122-152 4-37 (325)
433 PRK08268 3-hydroxy-acyl-CoA de 62.9 39 0.00085 33.0 8.4 96 124-228 8-118 (507)
434 PRK06124 gluconate 5-dehydroge 62.9 44 0.00095 28.6 8.0 79 120-205 8-98 (256)
435 PF02558 ApbA: Ketopantoate re 62.9 13 0.00028 29.4 4.3 97 127-233 2-102 (151)
436 PLN02702 L-idonate 5-dehydroge 62.8 16 0.00036 33.4 5.5 98 121-232 180-285 (364)
437 PRK09291 short chain dehydroge 62.8 29 0.00064 29.6 6.9 75 123-204 2-82 (257)
438 PRK01747 mnmC bifunctional tRN 62.7 70 0.0015 32.2 10.4 40 212-257 186-226 (662)
439 PRK08306 dipicolinate synthase 62.5 31 0.00068 31.1 7.2 87 120-229 149-238 (296)
440 TIGR02440 FadJ fatty oxidation 62.5 24 0.00051 36.0 7.0 96 124-228 305-416 (699)
441 KOG0022 Alcohol dehydrogenase, 62.5 15 0.00033 33.6 4.9 41 121-161 191-235 (375)
442 COG4301 Uncharacterized conser 62.2 1.2E+02 0.0025 27.1 11.0 109 121-236 77-197 (321)
443 cd01078 NAD_bind_H4MPT_DH NADP 62.1 53 0.0011 27.2 8.1 40 120-160 25-69 (194)
444 cd08279 Zn_ADH_class_III Class 61.8 26 0.00056 32.1 6.6 98 121-232 181-282 (363)
445 cd08236 sugar_DH NAD(P)-depend 61.5 28 0.0006 31.4 6.7 93 121-232 158-258 (343)
446 cd05279 Zn_ADH1 Liver alcohol 61.4 32 0.00068 31.6 7.2 97 121-232 182-285 (365)
447 TIGR02279 PaaC-3OHAcCoADH 3-hy 61.3 22 0.00048 34.7 6.3 101 123-227 5-115 (503)
448 PRK08862 short chain dehydroge 61.0 44 0.00094 28.5 7.5 46 121-166 3-52 (227)
449 cd05286 QOR2 Quinone oxidoredu 61.0 29 0.00062 30.3 6.6 41 120-160 134-178 (320)
450 PRK12939 short chain dehydroge 60.8 94 0.002 26.2 9.7 77 121-204 5-93 (250)
451 TIGR01963 PHB_DH 3-hydroxybuty 60.6 32 0.00068 29.3 6.6 76 123-205 1-88 (255)
452 PLN02662 cinnamyl-alcohol dehy 60.5 28 0.00061 31.0 6.5 77 122-203 3-84 (322)
453 PRK07062 short chain dehydroge 60.4 59 0.0013 28.0 8.4 81 121-205 6-97 (265)
454 PRK09242 tropinone reductase; 60.3 56 0.0012 28.0 8.2 81 120-205 6-98 (257)
455 PF11899 DUF3419: Protein of u 60.3 32 0.00069 32.4 6.9 54 98-160 19-74 (380)
456 PRK05854 short chain dehydroge 60.2 65 0.0014 28.9 8.9 81 120-205 11-103 (313)
457 PRK06125 short chain dehydroge 60.1 58 0.0013 28.0 8.3 79 121-205 5-91 (259)
458 cd00757 ThiF_MoeB_HesA_family 60.0 46 0.00099 28.6 7.5 32 121-152 19-53 (228)
459 PRK05876 short chain dehydroge 59.8 45 0.00098 29.3 7.6 78 121-205 4-93 (275)
460 cd01080 NAD_bind_m-THF_DH_Cycl 59.5 27 0.00058 28.8 5.7 33 120-152 41-76 (168)
461 PRK06128 oxidoreductase; Provi 59.2 96 0.0021 27.5 9.8 31 121-152 53-87 (300)
462 COG0604 Qor NADPH:quinone redu 59.1 26 0.00057 32.0 6.1 98 121-233 141-242 (326)
463 PRK12921 2-dehydropantoate 2-r 58.9 88 0.0019 27.7 9.4 97 125-231 2-101 (305)
464 PLN02896 cinnamyl-alcohol dehy 58.8 78 0.0017 28.8 9.3 31 121-152 8-42 (353)
465 PRK06172 short chain dehydroge 58.6 57 0.0012 27.8 8.0 78 121-205 5-94 (253)
466 KOG0822 Protein kinase inhibit 58.4 34 0.00074 33.6 6.8 96 125-229 370-475 (649)
467 cd05283 CAD1 Cinnamyl alcohol 58.3 94 0.002 27.9 9.6 40 121-160 168-210 (337)
468 PRK15116 sulfur acceptor prote 57.8 13 0.00028 33.2 3.7 34 120-153 27-63 (268)
469 PRK11064 wecC UDP-N-acetyl-D-m 57.8 1.6E+02 0.0034 27.9 11.3 35 124-158 4-41 (415)
470 PRK07035 short chain dehydroge 57.2 59 0.0013 27.7 7.8 77 121-204 6-94 (252)
471 cd08260 Zn_ADH6 Alcohol dehydr 56.5 38 0.00082 30.5 6.7 96 121-231 164-263 (345)
472 cd08297 CAD3 Cinnamyl alcohol 56.3 41 0.00089 30.2 6.9 97 121-231 164-264 (341)
473 cd08241 QOR1 Quinone oxidoredu 56.2 44 0.00094 29.2 6.9 41 120-160 137-181 (323)
474 PRK08213 gluconate 5-dehydroge 56.0 65 0.0014 27.6 7.9 79 120-205 9-99 (259)
475 cd01487 E1_ThiF_like E1_ThiF_l 55.8 1.1E+02 0.0023 25.2 8.7 29 125-153 1-32 (174)
476 cd01483 E1_enzyme_family Super 55.2 99 0.0021 24.1 8.5 29 125-153 1-32 (143)
477 PRK06035 3-hydroxyacyl-CoA deh 55.2 28 0.00061 31.0 5.5 96 124-228 4-117 (291)
478 PF04072 LCM: Leucine carboxyl 54.9 53 0.0012 27.1 6.8 43 124-166 80-124 (183)
479 COG2870 RfaE ADP-heptose synth 54.9 53 0.0012 31.2 7.2 96 132-232 52-177 (467)
480 PRK08229 2-dehydropantoate 2-r 54.8 93 0.002 28.2 9.0 97 125-231 4-106 (341)
481 cd08287 FDH_like_ADH3 formalde 54.6 44 0.00096 30.0 6.9 98 121-232 167-268 (345)
482 PRK07097 gluconate 5-dehydroge 54.5 77 0.0017 27.3 8.1 81 120-206 7-98 (265)
483 KOG1562 Spermidine synthase [A 54.0 44 0.00095 30.4 6.3 110 121-232 120-236 (337)
484 cd08235 iditol_2_DH_like L-idi 53.8 45 0.00097 29.9 6.7 99 120-232 163-265 (343)
485 TIGR02356 adenyl_thiF thiazole 53.3 63 0.0014 27.2 7.1 34 120-153 18-54 (202)
486 PRK05565 fabG 3-ketoacyl-(acyl 52.6 1.1E+02 0.0024 25.6 8.7 78 121-205 3-93 (247)
487 cd08292 ETR_like_2 2-enoyl thi 52.4 35 0.00076 30.2 5.8 98 120-232 137-238 (324)
488 PLN02780 ketoreductase/ oxidor 51.7 72 0.0016 28.9 7.7 59 122-184 52-114 (320)
489 PRK12826 3-ketoacyl-(acyl-carr 51.1 79 0.0017 26.6 7.6 80 121-207 4-95 (251)
490 PRK05866 short chain dehydroge 51.0 86 0.0019 27.8 8.0 79 120-205 37-127 (293)
491 PRK07688 thiamine/molybdopteri 50.9 42 0.00092 30.9 6.1 34 120-153 21-57 (339)
492 KOG1098 Putative SAM-dependent 50.8 16 0.00035 36.4 3.4 34 119-152 41-77 (780)
493 PRK12937 short chain dehydroge 50.7 1.5E+02 0.0032 24.9 9.8 78 121-205 3-93 (245)
494 COG0300 DltE Short-chain dehyd 50.6 93 0.002 27.7 7.9 79 121-204 4-93 (265)
495 PRK06113 7-alpha-hydroxysteroi 50.3 1E+02 0.0022 26.3 8.2 79 120-205 8-98 (255)
496 cd08269 Zn_ADH9 Alcohol dehydr 50.1 58 0.0013 28.5 6.8 95 121-232 128-229 (312)
497 cd08301 alcohol_DH_plants Plan 50.0 32 0.00069 31.6 5.2 40 121-160 186-229 (369)
498 PRK07890 short chain dehydroge 50.0 1E+02 0.0023 26.1 8.2 78 121-205 3-92 (258)
499 PRK08269 3-hydroxybutyryl-CoA 49.9 51 0.0011 30.0 6.4 87 136-228 5-111 (314)
500 PRK15057 UDP-glucose 6-dehydro 49.8 1.6E+02 0.0034 27.7 9.8 35 126-161 3-40 (388)
No 1
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.96 E-value=1.2e-29 Score=211.83 Aligned_cols=165 Identities=37% Similarity=0.543 Sum_probs=103.7
Q ss_pred CceEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhcc--CccccCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec
Q 023543 77 GHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDS--GMLLLHGKKIVELGSGCGLVGCIAALL--GAQVILTDL 152 (281)
Q Consensus 77 g~~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~--~~~~~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~ 152 (281)
+..+.|.|+.+ ..||.++|+++.+|++||.++... .+..+++++|||||||+|++|++++++ +.+|++||+
T Consensus 3 ~~~l~i~e~~~-----~~~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~ 77 (173)
T PF10294_consen 3 NKTLQIEEDWG-----DGTGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDY 77 (173)
T ss_dssp -------------------------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-
T ss_pred ccccccccccc-----cCCcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEecc
Confidence 45567777653 357999999999999999985311 234688999999999999999999998 568999999
Q ss_pred hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC-cCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 153 PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD-LIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 153 ~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~-~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
++++++++.|++.|+.. ...++.+..++|++..... +...+||+|+++|++|+++.+++|++++.+++++++.++++
T Consensus 78 ~~~l~~l~~Ni~~N~~~--~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~ 155 (173)
T PF10294_consen 78 NEVLELLRRNIELNGSL--LDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLA 155 (173)
T ss_dssp S-HHHHHHHHHHTT----------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEE
T ss_pred chhhHHHHHHHHhcccc--ccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 66999999999999731 1368999999999754222 23458999999999999999999999999999999999999
Q ss_pred EeeeChhHHHHHHHHHhc
Q 023543 232 GELRNDSVLEYFLEAAMK 249 (281)
Q Consensus 232 ~~~r~~~~~~~fl~~~~~ 249 (281)
++.|.... +.|++.+++
T Consensus 156 ~~~R~~~~-~~F~~~~~k 172 (173)
T PF10294_consen 156 YKRRRKSE-QEFFDRLKK 172 (173)
T ss_dssp EE-S-TGG-CHHHHHH--
T ss_pred eCEecHHH-HHHHHHhhh
Confidence 99996654 669988764
No 2
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=2.7e-23 Score=184.71 Aligned_cols=192 Identities=19% Similarity=0.188 Sum_probs=153.4
Q ss_pred CCCchhhhHHHhhccCCCCCCCCCcccccccceEEEecCCceEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccC
Q 023543 38 ESESAAEETMLLWGIQQPTLSKPNAFVAQSSLNLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSG 117 (281)
Q Consensus 38 ~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~g~~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~ 117 (281)
.++||..+++.-| +|.+..+..+|.+++...+-. ...+.|+.+|+..+++|+ ++++..+.+||.+.
T Consensus 94 ~e~DW~~~wk~~~---~P~rig~~f~I~Psw~~~~~~--~~~~~i~lDPGlAFGTG~-----HpTT~lcL~~Le~~---- 159 (300)
T COG2264 94 DEEDWEREWKKYF---HPVRIGERFVIVPSWREYPEP--SDELNIELDPGLAFGTGT-----HPTTSLCLEALEKL---- 159 (300)
T ss_pred ChHHHHHHHHhcC---CcEEeeeeEEECCCCccCCCC--CCceEEEEccccccCCCC-----ChhHHHHHHHHHHh----
Confidence 5899999999888 899999999999988775432 268999999999876665 99999999999975
Q ss_pred ccccCCCeEEEECCCcCHHHHHHHHcCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 118 MLLLHGKKIVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 118 ~~~~~~~~VLELGcGtG~~~i~~a~~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
..+|++|||+|||+|+++|+++++|+. |+++|+ +.+++.++.|++.|++.. .+....+ . ......+.+
T Consensus 160 --~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~----~~~~~~~---~-~~~~~~~~~ 229 (300)
T COG2264 160 --LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVEL----LVQAKGF---L-LLEVPENGP 229 (300)
T ss_pred --hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCch----hhhcccc---c-chhhcccCc
Confidence 468999999999999999999999996 999999 889999999999998861 1211111 1 122234579
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEEec
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRVEQ 258 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i~~ 258 (281)
||+|+|+=. ...+..|...+.++++|||+++++.....+. +.+.+.+. ++|.+.....
T Consensus 230 ~DvIVANIL---A~vl~~La~~~~~~lkpgg~lIlSGIl~~q~--~~V~~a~~~~gf~v~~~~~ 288 (300)
T COG2264 230 FDVIVANIL---AEVLVELAPDIKRLLKPGGRLILSGILEDQA--ESVAEAYEQAGFEVVEVLE 288 (300)
T ss_pred ccEEEehhh---HHHHHHHHHHHHHHcCCCceEEEEeehHhHH--HHHHHHHHhCCCeEeEEEe
Confidence 999998421 2234789999999999999999999887763 44666664 6999877753
No 3
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.91 E-value=1.5e-23 Score=187.81 Aligned_cols=199 Identities=21% Similarity=0.255 Sum_probs=144.4
Q ss_pred hccCCCceeeceeCCCCCCCchhhhHHHhhccCCCCCCCCCcccccccceEEEecCCceEEEEeCCCCCCCCCCcCceec
Q 023543 21 LGSYDGKVRLLIVSGDSESESAAEETMLLWGIQQPTLSKPNAFVAQSSLNLRIDACGHSLSILQSPSSLGTPGVTGSVMW 100 (281)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~g~~l~i~q~~~~~~~~g~tG~~~W 100 (281)
++.+...++.+ +++||.+.+...| +|....+..+|.+.+.+.+ ..+..+.|..+|+..+++|+ +
T Consensus 82 ~~~~~~~~~~~------~~~dW~~~Wk~~~---~P~~vg~~~~I~P~w~~~~--~~~~~~~I~idPg~AFGTG~-----H 145 (295)
T PF06325_consen 82 LGEIEIEIEEI------EEEDWEEAWKKYF---KPIRVGDRLVIVPSWEEYP--EPPDEIVIEIDPGMAFGTGH-----H 145 (295)
T ss_dssp ------EEEE--------HHCHHHHHHHH------EEECTTEEEEETT------SSTTSEEEEESTTSSS-SSH-----C
T ss_pred cCCCceEEEEe------ccccchHHHHhcC---ccEEECCcEEEECCCcccC--CCCCcEEEEECCCCcccCCC-----C
Confidence 44555556666 8899999999988 8999999999999998774 34677899999998766655 9
Q ss_pred chHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEE
Q 023543 101 DSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVV 178 (281)
Q Consensus 101 ~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~ 178 (281)
++|.++.++|.+. ..+|++|||+|||||+++|+++++|+ +|+++|+ +.+++.+++|++.|++. .++.+
T Consensus 146 ~TT~lcl~~l~~~------~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~----~~~~v 215 (295)
T PF06325_consen 146 PTTRLCLELLEKY------VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVE----DRIEV 215 (295)
T ss_dssp HHHHHHHHHHHHH------SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-T----TCEEE
T ss_pred HHHHHHHHHHHHh------ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCC----eeEEE
Confidence 9999999999875 46789999999999999999999998 5999999 88999999999999987 34444
Q ss_pred EEEecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhcCCeEEEEe
Q 023543 179 TELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGRVE 257 (281)
Q Consensus 179 ~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~v~~i~ 257 (281)
.. .......+||+|+|+=.. ..+..++..+.++++|+|.++++.....+. ..+.+.+.+||.+....
T Consensus 216 ~~-------~~~~~~~~~dlvvANI~~---~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~--~~v~~a~~~g~~~~~~~ 282 (295)
T PF06325_consen 216 SL-------SEDLVEGKFDLVVANILA---DVLLELAPDIASLLKPGGYLILSGILEEQE--DEVIEAYKQGFELVEER 282 (295)
T ss_dssp SC-------TSCTCCS-EEEEEEES-H---HHHHHHHHHCHHHEEEEEEEEEEEEEGGGH--HHHHHHHHTTEEEEEEE
T ss_pred EE-------ecccccccCCEEEECCCH---HHHHHHHHHHHHhhCCCCEEEEccccHHHH--HHHHHHHHCCCEEEEEE
Confidence 21 112234899999985331 224678888888999999999999987764 34556666689876654
No 4
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.82 E-value=1.2e-18 Score=156.88 Aligned_cols=190 Identities=18% Similarity=0.222 Sum_probs=144.3
Q ss_pred CCCchhhhHHHhhccCCCCCCCCCcccccccceEEEecCCceEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccC
Q 023543 38 ESESAAEETMLLWGIQQPTLSKPNAFVAQSSLNLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSG 117 (281)
Q Consensus 38 ~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~g~~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~ 117 (281)
+++||.+.+...| +|.+..+..+|.+.+....- ....+.|..+|+..+++|+ ++++.++.+++...
T Consensus 91 ~~~dW~~~w~~~~---~p~~~g~~~~i~p~w~~~~~--~~~~~~i~ldpg~aFgtG~-----h~tt~l~l~~l~~~---- 156 (288)
T TIGR00406 91 FSKDWERAWKDNF---HPVQFGKRFWICPSWRDVPS--DEDALIIMLDPGLAFGTGT-----HPTTSLCLEWLEDL---- 156 (288)
T ss_pred chhhHHHHHHHhC---CCEEEcCeEEEECCCcCCCC--CCCcEEEEECCCCcccCCC-----CHHHHHHHHHHHhh----
Confidence 5799999999998 89999888899888765432 3456788889987655444 88999988888764
Q ss_pred ccccCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 118 MLLLHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 118 ~~~~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
..++++|||+|||+|.+++.+++.|+ +|+++|+ +.+++.+++|+..|++. .++.+...+ . ....+.+
T Consensus 157 --~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~----~~~~~~~~~---~--~~~~~~~ 225 (288)
T TIGR00406 157 --DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVS----DRLQVKLIY---L--EQPIEGK 225 (288)
T ss_pred --cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC----cceEEEecc---c--ccccCCC
Confidence 35689999999999999999999886 7999999 88999999999999765 234333321 1 1123468
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhcCCeEEEEe
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGRVE 257 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~v~~i~ 257 (281)
||+|+++-+ ...+..++..+.++|+|||.++++.....+. ..+.+.+.++|.+..+.
T Consensus 226 fDlVvan~~---~~~l~~ll~~~~~~LkpgG~li~sgi~~~~~--~~v~~~~~~~f~~~~~~ 282 (288)
T TIGR00406 226 ADVIVANIL---AEVIKELYPQFSRLVKPGGWLILSGILETQA--QSVCDAYEQGFTVVEIR 282 (288)
T ss_pred ceEEEEecC---HHHHHHHHHHHHHHcCCCcEEEEEeCcHhHH--HHHHHHHHccCceeeEe
Confidence 999998643 3345788999999999999999988765542 44566666568766553
No 5
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=99.82 E-value=4.3e-19 Score=154.14 Aligned_cols=171 Identities=36% Similarity=0.470 Sum_probs=130.7
Q ss_pred CcCceecchHHHHHHHHhhhhccCc-----ccc--CCCeEEEECCCcCHHHHHHHH-cCCEEEEEechhHHHHHHHHHHH
Q 023543 94 VTGSVMWDSGVVLGKFLEHAVDSGM-----LLL--HGKKIVELGSGCGLVGCIAAL-LGAQVILTDLPDRLRLLKKNIEN 165 (281)
Q Consensus 94 ~tG~~~W~~s~~la~~l~~~~~~~~-----~~~--~~~~VLELGcGtG~~~i~~a~-~g~~V~~tD~~~~l~~~~~N~~~ 165 (281)
...+++|+++-.++.++...-..++ ..+ +..+|||||+|||++|+.+|+ .+++|+.+|.+..+..++.|...
T Consensus 51 ~~~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~ 130 (248)
T KOG2793|consen 51 GISAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDK 130 (248)
T ss_pred ceeeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhh
Confidence 3578999999999999876522110 112 245799999999999999998 78899999999998888888777
Q ss_pred hhcCCCC-CCceEEEEEecCCCCCCCcCCCC-CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHH
Q 023543 166 NLRHGDL-RGSAVVTELTWGDDPDQDLIQPL-PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYF 243 (281)
Q Consensus 166 n~~~~~~-~~~i~~~~l~w~~~~~~~~~~~~-fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~f 243 (281)
|+..... ..++.+..++|++..+.....++ +|+|+++|++|.++..+.++.+++.+|..++.++++++.|+....+.+
T Consensus 131 ~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~~~~~~~~ 210 (248)
T KOG2793|consen 131 NNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRRDAAWEIE 210 (248)
T ss_pred hhhhhhhcCCceeEEEEecCCcccHhhccCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEecccchHHHHH
Confidence 7655332 24899999999998776555555 999999999999999999999999999999999999999997555544
Q ss_pred HHHHhcCCeEEEEecCCCCCC
Q 023543 244 LEAAMKDFVIGRVEQTQWHPD 264 (281)
Q Consensus 244 l~~~~~~f~v~~i~~~~~~~~ 264 (281)
.-.+...|..-.+....++++
T Consensus 211 ~~~~~~~~~~~~v~~~~~~~~ 231 (248)
T KOG2793|consen 211 VLLFKKDLKIFDVVQESFFKD 231 (248)
T ss_pred HHHhhhhhccceeeeEeccCc
Confidence 444443333333333334333
No 6
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.80 E-value=9.2e-18 Score=148.10 Aligned_cols=184 Identities=22% Similarity=0.288 Sum_probs=139.3
Q ss_pred CCCchhhhHHHhhccCCCCCCCCCcccccccceEEEecCCceEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccC
Q 023543 38 ESESAAEETMLLWGIQQPTLSKPNAFVAQSSLNLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSG 117 (281)
Q Consensus 38 ~~~~~~~~~~~~~~~~~p~~~~~~~~v~~~~~~~~~~~~g~~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~ 117 (281)
+++||.+.+-..| +|...++..+|.+.+.... . .....|..+|+..++.|. ++.+..+.+++...
T Consensus 52 ~~~dw~~~w~~~~---~p~~~g~~~~i~p~~~~~~--~-~~~~~i~i~p~~afgtg~-----h~tt~~~l~~l~~~---- 116 (250)
T PRK00517 52 EDEDWEREWKKYF---HPIRIGDRLWIVPSWEDPP--D-PDEINIELDPGMAFGTGT-----HPTTRLCLEALEKL---- 116 (250)
T ss_pred CchhHHHHHHHHC---CCEEEcCCEEEECCCcCCC--C-CCeEEEEECCCCccCCCC-----CHHHHHHHHHHHhh----
Confidence 8899999999888 8988888888988877543 2 456678888876554333 88899999998753
Q ss_pred ccccCCCeEEEECCCcCHHHHHHHHcCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 118 MLLLHGKKIVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 118 ~~~~~~~~VLELGcGtG~~~i~~a~~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
..++++|||+|||+|.+++.+++.|+. |+++|+ +.+++.+++|+..|++. ..+.+.. + +.+
T Consensus 117 --~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~----~~~~~~~---~--------~~~ 179 (250)
T PRK00517 117 --VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVE----LNVYLPQ---G--------DLK 179 (250)
T ss_pred --cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC----ceEEEcc---C--------CCC
Confidence 357899999999999999999988875 999999 88999999999998763 2232211 1 127
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEEec
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRVEQ 258 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i~~ 258 (281)
||+|+++-. ...+..+++.+.++|+|||.++++...... .+.+...+. .||.+.....
T Consensus 180 fD~Vvani~---~~~~~~l~~~~~~~LkpgG~lilsgi~~~~--~~~v~~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 180 ADVIVANIL---ANPLLELAPDLARLLKPGGRLILSGILEEQ--ADEVLEAYEEAGFTLDEVLE 238 (250)
T ss_pred cCEEEEcCc---HHHHHHHHHHHHHhcCCCcEEEEEECcHhh--HHHHHHHHHHCCCEEEEEEE
Confidence 999997532 234678889999999999999998766543 234555555 4898777643
No 7
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.78 E-value=1.7e-17 Score=138.12 Aligned_cols=136 Identities=21% Similarity=0.307 Sum_probs=107.0
Q ss_pred eEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCE--EEEEec-hhH
Q 023543 79 SLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQ--VILTDL-PDR 155 (281)
Q Consensus 79 ~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~--V~~tD~-~~~ 155 (281)
.+++++.|+.|+.. ++-.++.+|++++... ++++|||||||+|.+|+.+++.+++ |+++|+ +.+
T Consensus 1 ~~~~~~~~gvFs~~-----~~d~~t~lL~~~l~~~--------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a 67 (170)
T PF05175_consen 1 ELEFITHPGVFSPP-----RLDAGTRLLLDNLPKH--------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDA 67 (170)
T ss_dssp EEEEEEETTSTTTT-----SHHHHHHHHHHHHHHH--------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHH
T ss_pred CEEEEECCCeeCCC-----CCCHHHHHHHHHHhhc--------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHH
Confidence 36788889887633 3367889999998752 6789999999999999999997764 999999 889
Q ss_pred HHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCCC-----cHHHHHHHHHHhhCCCcEEEE
Q 023543 156 LRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEG-----AVGDLLDTLLQLCGTQTTIFL 230 (281)
Q Consensus 156 l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~-----~~~~ll~~l~~ll~~~g~~~l 230 (281)
++.+++|++.|+.. ++.+...|+.+. ..+.+||+|+++.+++... ....+++...++|+|+|.+++
T Consensus 68 ~~~a~~n~~~n~~~-----~v~~~~~d~~~~----~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 68 LELAKRNAERNGLE-----NVEVVQSDLFEA----LPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp HHHHHHHHHHTTCT-----TEEEEESSTTTT----CCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHhcCcc-----cccccccccccc----ccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 99999999999876 366666555432 2357899999998876644 378999999999999999988
Q ss_pred EEeeeC
Q 023543 231 AGELRN 236 (281)
Q Consensus 231 ~~~~r~ 236 (281)
+.....
T Consensus 139 v~~~~~ 144 (170)
T PF05175_consen 139 VINSHL 144 (170)
T ss_dssp EEETTS
T ss_pred EeecCC
Confidence 766433
No 8
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=99.74 E-value=5.2e-18 Score=140.37 Aligned_cols=130 Identities=24% Similarity=0.356 Sum_probs=110.8
Q ss_pred CCCcCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCE-EEEEec-hhHHHHHHHHHHHhhcC
Q 023543 92 PGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNIENNLRH 169 (281)
Q Consensus 92 ~g~tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~-V~~tD~-~~~l~~~~~N~~~n~~~ 169 (281)
+..++++.|.+++.+|+|+..+ |..++||+|||+|+|+|+++|++++.|++ |+++|+ +.....++.|++.|+..
T Consensus 53 pPpfwa~~WagG~~lAR~i~~~----PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~ 128 (218)
T COG3897 53 PPPFWAFAWAGGQVLARYIDDH----PETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS 128 (218)
T ss_pred CchHHHHHHhhhHHHHHHHhcC----ccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccce
Confidence 4458999999999999999876 55789999999999999999999999986 999999 88899999999999865
Q ss_pred CCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeCh
Q 023543 170 GDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRND 237 (281)
Q Consensus 170 ~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~ 237 (281)
+.+...+. ...++.||+|+++|++|+......++.+..++...|-.+++..+.|..
T Consensus 129 ------i~~~~~d~------~g~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 129 ------ILFTHADL------IGSPPAFDLLLAGDLFYNHTEADRLIPWKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred ------eEEeeccc------cCCCcceeEEEeeceecCchHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 55555432 225678999999999999999999999777777777777777777764
No 9
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=1.7e-16 Score=140.64 Aligned_cols=166 Identities=15% Similarity=0.187 Sum_probs=124.3
Q ss_pred CCceEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCC--EEEEEec-
Q 023543 76 CGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGA--QVILTDL- 152 (281)
Q Consensus 76 ~g~~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~--~V~~tD~- 152 (281)
.|..++|...|+.||.. ++..+|.+|++-|.. ..+.+|||||||.|.+|+.+++... +++++|.
T Consensus 125 ~~~~~~~~t~pGVFS~~-----~lD~GS~lLl~~l~~--------~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn 191 (300)
T COG2813 125 LGHELTFKTLPGVFSRD-----KLDKGSRLLLETLPP--------DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVN 191 (300)
T ss_pred ccCceEEEeCCCCCcCC-----CcChHHHHHHHhCCc--------cCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecC
Confidence 37899999999998844 347788888877753 2344999999999999999999765 7999999
Q ss_pred hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCCC-----cHHHHHHHHHHhhCCCcE
Q 023543 153 PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEG-----AVGDLLDTLLQLCGTQTT 227 (281)
Q Consensus 153 ~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~-----~~~~ll~~l~~ll~~~g~ 227 (281)
..+++.+|+|+..|+.. +..+.. .+..+. .. .+||.||++..++.-. ..+.++....++|++||.
T Consensus 192 ~~Av~~ar~Nl~~N~~~-----~~~v~~---s~~~~~-v~-~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGe 261 (300)
T COG2813 192 ARAVESARKNLAANGVE-----NTEVWA---SNLYEP-VE-GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGE 261 (300)
T ss_pred HHHHHHHHHhHHHcCCC-----ccEEEE---eccccc-cc-ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCE
Confidence 67899999999999876 222222 122222 22 3899999999998732 245799999999999999
Q ss_pred EEEEEeeeChhHHHHHHHHHhcCCe-EEEEecCCCCCCCCCCcEEEEEEEe
Q 023543 228 IFLAGELRNDSVLEYFLEAAMKDFV-IGRVEQTQWHPDYCSPRVVVYILVK 277 (281)
Q Consensus 228 ~~l~~~~r~~~~~~~fl~~~~~~f~-v~~i~~~~~~~~~~~~~~~i~~~~~ 277 (281)
++++.. +... ....+.+-|. ++.+. +..+|.||...|
T Consensus 262 L~iVan-~~l~----y~~~L~~~Fg~v~~la--------~~~gf~Vl~a~k 299 (300)
T COG2813 262 LWIVAN-RHLP----YEKKLKELFGNVEVLA--------KNGGFKVLRAKK 299 (300)
T ss_pred EEEEEc-CCCC----hHHHHHHhcCCEEEEE--------eCCCEEEEEEec
Confidence 998877 3332 2233455676 77776 467899998765
No 10
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=7.6e-18 Score=135.15 Aligned_cols=153 Identities=25% Similarity=0.311 Sum_probs=119.4
Q ss_pred ceecchHHHHHHHHhhhhccCccccCCCeEEEECCC-cCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCCCC
Q 023543 97 SVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSG-CGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDL 172 (281)
Q Consensus 97 ~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcG-tG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~ 172 (281)
-.+||+...|+.++.+. +..+.|++|||||.| +|+.|+++|... ..|..||. .++++..++-+..|... .
T Consensus 8 vciwpseeala~~~l~~----~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s--~ 81 (201)
T KOG3201|consen 8 VCIWPSEEALAWTILRD----PNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMAS--S 81 (201)
T ss_pred EEecccHHHHHHHHHhc----hhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccccc--c
Confidence 45999999999999875 346789999999999 599999998754 46999999 77899999888888443 1
Q ss_pred CCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhc-CC
Q 023543 173 RGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMK-DF 251 (281)
Q Consensus 173 ~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~-~f 251 (281)
..++.+....|...... .....||+|+++||+|..+.++.|+++++.+|+|.|..++..+.|.+. ++.|++.+.. ||
T Consensus 82 ~tsc~vlrw~~~~aqsq-~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~s-L~kF~de~~~~gf 159 (201)
T KOG3201|consen 82 LTSCCVLRWLIWGAQSQ-QEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQS-LQKFLDEVGTVGF 159 (201)
T ss_pred cceehhhHHHHhhhHHH-HhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcccch-HHHHHHHHHhcee
Confidence 12343333333222111 123579999999999999999999999999999999988888877664 6889999985 89
Q ss_pred eEEEEe
Q 023543 252 VIGRVE 257 (281)
Q Consensus 252 ~v~~i~ 257 (281)
++..-+
T Consensus 160 ~v~l~e 165 (201)
T KOG3201|consen 160 TVCLEE 165 (201)
T ss_pred EEEecc
Confidence 876654
No 11
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.71 E-value=9e-16 Score=142.14 Aligned_cols=178 Identities=15% Similarity=0.124 Sum_probs=125.5
Q ss_pred eEEEecCCceEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc--CCEE
Q 023543 70 NLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL--GAQV 147 (281)
Q Consensus 70 ~~~~~~~g~~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~--g~~V 147 (281)
.+++.+.+..++|...+++||. .++..++.+|.+++.. ..+++|||||||+|.+|+.+++. +++|
T Consensus 189 ~~~~~~~~~~~~~~~~~gVFs~-----~~LD~GtrllL~~lp~--------~~~~~VLDLGCGtGvi~i~la~~~P~~~V 255 (378)
T PRK15001 189 TVSWKLEGTDWTIHNHANVFSR-----TGLDIGARFFMQHLPE--------NLEGEIVDLGCGNGVIGLTLLDKNPQAKV 255 (378)
T ss_pred eeEEEEcCceEEEEecCCccCC-----CCcChHHHHHHHhCCc--------ccCCeEEEEeccccHHHHHHHHhCCCCEE
Confidence 3455567889999999999873 3457888888887743 23469999999999999999986 4689
Q ss_pred EEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCC-----CcHHHHHHHHHHh
Q 023543 148 ILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSE-----GAVGDLLDTLLQL 221 (281)
Q Consensus 148 ~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~-----~~~~~ll~~l~~l 221 (281)
+++|. +.+++.+++|++.|+... ..++.+.. ++.... +...+||+|+++.+++.. .....+++.+.++
T Consensus 256 ~~vD~S~~Av~~A~~N~~~n~~~~--~~~v~~~~---~D~l~~-~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~ 329 (378)
T PRK15001 256 VFVDESPMAVASSRLNVETNMPEA--LDRCEFMI---NNALSG-VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRC 329 (378)
T ss_pred EEEECCHHHHHHHHHHHHHcCccc--CceEEEEE---cccccc-CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHh
Confidence 99999 778999999999996431 12444443 333222 233579999997766542 2457889999999
Q ss_pred hCCCcEEEEEEeeeChhHHHHHHHHHhcCCe-EEEEecCCCCCCCCCCcEEEEEEEecC
Q 023543 222 CGTQTTIFLAGELRNDSVLEYFLEAAMKDFV-IGRVEQTQWHPDYCSPRVVVYILVKKL 279 (281)
Q Consensus 222 l~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~-v~~i~~~~~~~~~~~~~~~i~~~~~k~ 279 (281)
|+|||.++++.. |... +. ..+.+.|. ++.+. +..+|.||..+|..
T Consensus 330 LkpGG~L~iV~n-r~l~-y~---~~L~~~fg~~~~va--------~~~kf~vl~a~k~~ 375 (378)
T PRK15001 330 LKINGELYIVAN-RHLD-YF---HKLKKIFGNCTTIA--------TNNKFVVLKAVKLG 375 (378)
T ss_pred cccCCEEEEEEe-cCcC-HH---HHHHHHcCCceEEc--------cCCCEEEEEEEeCC
Confidence 999999998864 3322 12 22333343 34443 56789999988743
No 12
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.71 E-value=8.3e-16 Score=133.64 Aligned_cols=176 Identities=15% Similarity=0.178 Sum_probs=131.7
Q ss_pred CceEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc-C-CEEEEEec-h
Q 023543 77 GHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL-G-AQVILTDL-P 153 (281)
Q Consensus 77 g~~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~-g-~~V~~tD~-~ 153 (281)
++.+.|.|++.. ++.=-.+++|+.|..- ...++|||||||+|++|+++|++ . ++++++|+ +
T Consensus 15 ~~~~~I~q~~~~--------~~~~~DaiLL~~~~~~--------~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~ 78 (248)
T COG4123 15 FKQFFIIQDRCG--------FRYGTDAILLAAFAPV--------PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQE 78 (248)
T ss_pred ccceEEEeCCCc--------cccccHHHHHHhhccc--------ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCH
Confidence 577888998864 3444579999999752 34889999999999999999986 4 68999999 8
Q ss_pred hHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCCC------------------cHHHHH
Q 023543 154 DRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEG------------------AVGDLL 215 (281)
Q Consensus 154 ~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~------------------~~~~ll 215 (281)
++.++|++|++.|.+. .++.+.+.|..+.... ....+||+|+++...|... .++.++
T Consensus 79 ~~a~~A~~nv~ln~l~----~ri~v~~~Di~~~~~~-~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i 153 (248)
T COG4123 79 EAAEMAQRNVALNPLE----ERIQVIEADIKEFLKA-LVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLI 153 (248)
T ss_pred HHHHHHHHHHHhCcch----hceeEehhhHHHhhhc-ccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHH
Confidence 8999999999999887 7899998776543322 2234799999988877631 278999
Q ss_pred HHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhc-CCeEEEEecCCCCCCCCCCcEEEEEEEe
Q 023543 216 DTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMK-DFVIGRVEQTQWHPDYCSPRVVVYILVK 277 (281)
Q Consensus 216 ~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~-~f~v~~i~~~~~~~~~~~~~~~i~~~~~ 277 (281)
+...++||++|.+.++... +.+..|++.+++ +|...++..---+++ +.....+....|
T Consensus 154 ~~a~~~lk~~G~l~~V~r~---erl~ei~~~l~~~~~~~k~i~~V~p~~~-k~A~~vLv~~~k 212 (248)
T COG4123 154 RAAAKLLKPGGRLAFVHRP---ERLAEIIELLKSYNLEPKRIQFVYPKIG-KAANRVLVEAIK 212 (248)
T ss_pred HHHHHHccCCCEEEEEecH---HHHHHHHHHHHhcCCCceEEEEecCCCC-CcceEEEEEEec
Confidence 9999999999999888653 234557888886 888888754332222 333444444444
No 13
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.68 E-value=1.8e-16 Score=135.97 Aligned_cols=109 Identities=20% Similarity=0.162 Sum_probs=92.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
+.|++|||+|||-|+++..+|+.|++|+++|. +++++.++..+.++++. +.+....-+ +......+||+|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~------i~y~~~~~e---dl~~~~~~FDvV 128 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVN------IDYRQATVE---DLASAGGQFDVV 128 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcccc------ccchhhhHH---HHHhcCCCccEE
Confidence 68999999999999999999999999999999 78899999999998865 222222211 111123699999
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChh
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDS 238 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~ 238 (281)
++.+++.|.++.+.+++.+.+++||+|.++++...|+..
T Consensus 129 ~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~k 167 (243)
T COG2227 129 TCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLK 167 (243)
T ss_pred EEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHH
Confidence 999999999999999999999999999999999988754
No 14
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.65 E-value=1.8e-14 Score=120.68 Aligned_cols=147 Identities=18% Similarity=0.162 Sum_probs=106.6
Q ss_pred HHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEE
Q 023543 103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTEL 181 (281)
Q Consensus 103 s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l 181 (281)
+.+|.+++. ..++++|||+|||+|.+++.++..+.+|+++|+ +++++.+++|+..|+. ++.+...
T Consensus 8 ~~~l~~~l~--------~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~ 73 (179)
T TIGR00537 8 SLLLEANLR--------ELKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNV------GLDVVMT 73 (179)
T ss_pred HHHHHHHHH--------hcCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC------ceEEEEc
Confidence 566666664 246689999999999999999998889999999 8999999999988764 3556665
Q ss_pred ecCCCCCCCcCCCCCcEEEEccccCCCC---------------------cHHHHHHHHHHhhCCCcEEEEEEeeeChhHH
Q 023543 182 TWGDDPDQDLIQPLPDYVLGSDVIYSEG---------------------AVGDLLDTLLQLCGTQTTIFLAGELRNDSVL 240 (281)
Q Consensus 182 ~w~~~~~~~~~~~~fD~Iia~d~iy~~~---------------------~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~ 240 (281)
|+.+. ..++||+|+++.+.+... .++.+++.+.++|+|||.+++........
T Consensus 74 d~~~~-----~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~-- 146 (179)
T TIGR00537 74 DLFKG-----VRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGE-- 146 (179)
T ss_pred ccccc-----cCCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCCh--
Confidence 55332 235899999987765422 15678999999999999988876554421
Q ss_pred HHHHHHHh-cCCeEEEEecCCCCCCCCCCcEEEEE
Q 023543 241 EYFLEAAM-KDFVIGRVEQTQWHPDYCSPRVVVYI 274 (281)
Q Consensus 241 ~~fl~~~~-~~f~v~~i~~~~~~~~~~~~~~~i~~ 274 (281)
..+++.+. .+|.++.+..... -.+++.+|+
T Consensus 147 ~~~~~~l~~~gf~~~~~~~~~~----~~~~~~~~~ 177 (179)
T TIGR00537 147 PDTFDKLDERGFRYEIVAERGL----FFEELFAIK 177 (179)
T ss_pred HHHHHHHHhCCCeEEEEEEeec----CceEEEEEE
Confidence 23444554 4999998875443 334555554
No 15
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.64 E-value=1.2e-15 Score=117.39 Aligned_cols=104 Identities=17% Similarity=0.220 Sum_probs=83.7
Q ss_pred CCCeEEEECCCcCHHHHHHHH--cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAAL--LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~--~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
++++|||||||+|..++.+++ .+++|+++|+ +++++.+++|+..++.. .++.+..-++ . ... -..++||+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~----~~i~~~~~d~-~-~~~-~~~~~~D~ 73 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLS----DRITFVQGDA-E-FDP-DFLEPFDL 73 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTT----TTEEEEESCC-H-GGT-TTSSCEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCC----CCeEEEECcc-c-cCc-ccCCCCCE
Confidence 578999999999999999999 8899999999 89999999999766554 6888888665 1 111 12357999
Q ss_pred EEEcc-ccCC---CCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 199 VLGSD-VIYS---EGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 199 Iia~d-~iy~---~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
|++.. +..+ ......+++.+.++|+|||++++..
T Consensus 74 v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 74 VICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 99988 3322 2456889999999999999998864
No 16
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.62 E-value=1.1e-14 Score=118.82 Aligned_cols=110 Identities=22% Similarity=0.253 Sum_probs=93.2
Q ss_pred CCCeEEEECCCcCHHHHHHH-Hc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 122 HGKKIVELGSGCGLVGCIAA-LL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a-~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
++.+|||||||+|.++..++ +. +++|+++|+ +++++.++++++.++.. ++.+...|+.+ .+..+. .+||
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-----ni~~~~~d~~~-l~~~~~-~~~D 75 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-----NIEFIQGDIED-LPQELE-EKFD 75 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-----TEEEEESBTTC-GCGCSS-TTEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-----ccceEEeehhc-cccccC-CCee
Confidence 57899999999999999999 43 678999999 89999999999998875 79999988766 332122 7899
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChh
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDS 238 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~ 238 (281)
+|++..++++......+++.+.++|+++|.+++........
T Consensus 76 ~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~~~ 116 (152)
T PF13847_consen 76 IIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPNHNDE 116 (152)
T ss_dssp EEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEEHSHH
T ss_pred EEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECChHHH
Confidence 99999999999999999999999999999999888774443
No 17
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.61 E-value=1.6e-15 Score=131.02 Aligned_cols=111 Identities=26% Similarity=0.312 Sum_probs=86.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
+.|++|||+|||+|+++..+|++|++|+|+|. +++++.|++....+-.. ...+. ..+...+. +..-..++||.|
T Consensus 88 ~~g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~---~~~~~-y~l~~~~~-~~E~~~~~fDaV 162 (282)
T KOG1270|consen 88 LLGMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVL---EGAIA-YRLEYEDT-DVEGLTGKFDAV 162 (282)
T ss_pred cCCceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchh---ccccc-eeeehhhc-chhhccccccee
Confidence 55789999999999999999999999999999 88999999885555333 11111 12221111 111123569999
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeC
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRN 236 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~ 236 (281)
++++++.|..+.+.+++.+.++|+|+|.++++...|.
T Consensus 163 vcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt 199 (282)
T KOG1270|consen 163 VCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRT 199 (282)
T ss_pred eeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhh
Confidence 9999999999999999999999999999999988775
No 18
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.60 E-value=8.8e-14 Score=117.40 Aligned_cols=123 Identities=17% Similarity=0.174 Sum_probs=92.7
Q ss_pred CCCeEEEECCCcCHHHHHHHH--cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAAL--LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~--~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
++.+|||+|||+|..++.+++ .+.+|+++|. +++++.+++|++.++.. ++++...+..+. .. +.+||+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-----~i~~~~~d~~~~---~~-~~~fDl 115 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-----NVTVVHGRAEEF---GQ-EEKFDV 115 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-----CEEEEeccHhhC---CC-CCCccE
Confidence 488999999999999998886 4578999999 88999999999999865 477777665432 12 568999
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEEecCC
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRVEQTQ 260 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i~~~~ 260 (281)
|++... ..++.+++.+.++|+|||.+++......... +....+ .|+.+..+....
T Consensus 116 V~~~~~----~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~ 171 (187)
T PRK00107 116 VTSRAV----ASLSDLVELCLPLLKPGGRFLALKGRDPEEE---IAELPKALGGKVEEVIELT 171 (187)
T ss_pred EEEccc----cCHHHHHHHHHHhcCCCeEEEEEeCCChHHH---HHHHHHhcCceEeeeEEEe
Confidence 998642 4578999999999999999888765443332 223233 288777665433
No 19
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.59 E-value=1.4e-13 Score=126.49 Aligned_cols=163 Identities=15% Similarity=0.174 Sum_probs=114.5
Q ss_pred eEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhH
Q 023543 79 SLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDR 155 (281)
Q Consensus 79 ~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~ 155 (281)
.+.+...|+.++..+ +..+|.+|.+.+.. ...++|||||||+|.+++.+++.+ .+|+++|+ +.+
T Consensus 166 ~l~i~~~pgvFs~~~-----lD~gt~lLl~~l~~--------~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~A 232 (342)
T PRK09489 166 GLTVKTLPGVFSRDG-----LDVGSQLLLSTLTP--------HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAA 232 (342)
T ss_pred CEEEEeCCCCCCCCC-----CCHHHHHHHHhccc--------cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHH
Confidence 467788888776433 36677777777642 234589999999999999999864 48999999 789
Q ss_pred HHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCC-----CCcHHHHHHHHHHhhCCCcEEEE
Q 023543 156 LRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYS-----EGAVGDLLDTLLQLCGTQTTIFL 230 (281)
Q Consensus 156 l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~-----~~~~~~ll~~l~~ll~~~g~~~l 230 (281)
++.+++|++.|+.. ..+.. .+.... ...+||+|+++.++|. ....+.+++.+.++|+|||.+++
T Consensus 233 l~~A~~nl~~n~l~------~~~~~---~D~~~~--~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 233 LESSRATLAANGLE------GEVFA---SNVFSD--IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred HHHHHHHHHHcCCC------CEEEE---cccccc--cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence 99999999999764 22332 222221 2468999999887765 23568999999999999999988
Q ss_pred EEeeeChhHHHHHHHHHhcCCe-EEEEecCCCCCCCCCCcEEEEEEEec
Q 023543 231 AGELRNDSVLEYFLEAAMKDFV-IGRVEQTQWHPDYCSPRVVVYILVKK 278 (281)
Q Consensus 231 ~~~~r~~~~~~~fl~~~~~~f~-v~~i~~~~~~~~~~~~~~~i~~~~~k 278 (281)
+....-+ ++..++. .|. ++.+. +..+|.||..+|.
T Consensus 302 Van~~l~--y~~~l~~---~Fg~~~~la--------~~~~f~v~~a~~~ 337 (342)
T PRK09489 302 VANAFLP--YPDLLDE---TFGSHEVLA--------QTGRFKVYRAIMT 337 (342)
T ss_pred EEeCCCC--hHHHHHH---HcCCeEEEE--------eCCCEEEEEEEcc
Confidence 7653222 2233333 232 34443 3568899988764
No 20
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.58 E-value=7.4e-14 Score=117.39 Aligned_cols=125 Identities=16% Similarity=0.123 Sum_probs=94.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
+++++|||+|||+|.+++.++..+ .+|+++|. +.+++.+++|++.++.. ++.+...++.+. ....+||
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-----~i~~i~~d~~~~----~~~~~fD 111 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-----NVEIVNGRAEDF----QHEEQFD 111 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-----CeEEEecchhhc----cccCCcc
Confidence 468899999999999999988754 57999999 78999999999988754 577888766442 1246899
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEEec
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRVEQ 258 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i~~ 258 (281)
+|++.. ...++.+++.+.++|+|||.+++..............+.+. .||+......
T Consensus 112 ~I~s~~----~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 169 (181)
T TIGR00138 112 VITSRA----LASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPP 169 (181)
T ss_pred EEEehh----hhCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeeccc
Confidence 998854 23567889999999999999888765444444444444443 4787666643
No 21
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.58 E-value=1.3e-14 Score=132.01 Aligned_cols=109 Identities=19% Similarity=0.163 Sum_probs=89.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||+|||+|.++..+++.|++|+++|. +++++.+++++..+... .++.+...+..+ ....+.+||+|
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~----~~i~~~~~dae~---l~~~~~~FD~V 202 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVT----STIEYLCTTAEK---LADEGRKFDAV 202 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcc----cceeEEecCHHH---hhhccCCCCEE
Confidence 56789999999999999999999999999999 88999999887665432 356666644322 12235689999
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeC
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRN 236 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~ 236 (281)
++.+++++..+...+++.+.++|+|||.++++...+.
T Consensus 203 i~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 203 LSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred EEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence 9999999999999999999999999999998865543
No 22
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.55 E-value=9.3e-14 Score=118.33 Aligned_cols=102 Identities=15% Similarity=0.138 Sum_probs=83.2
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++++|||+|||+|..++.+++.|.+|+++|+ +.+++.+++++..++.. ++.+...++.+. .+ ..+||+|
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~-----~v~~~~~d~~~~---~~-~~~fD~I 99 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLD-----NLHTAVVDLNNL---TF-DGEYDFI 99 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----cceEEecChhhC---Cc-CCCcCEE
Confidence 46789999999999999999999999999999 88999999999887654 456666554321 12 3579999
Q ss_pred EEccccCCC--CcHHHHHHHHHHhhCCCcEEEEE
Q 023543 200 LGSDVIYSE--GAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 200 ia~d~iy~~--~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
+++.++|+. .....+++.+.++|+|||.+++.
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 100 LSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred EEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 999998763 46889999999999999986543
No 23
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.54 E-value=8.8e-14 Score=123.03 Aligned_cols=109 Identities=20% Similarity=0.152 Sum_probs=90.2
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||+|||+|..++.++..|.+|+++|+ +++++.+++++..++.. .++.+...+..+..+ ....+||+|
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~----~~v~~~~~d~~~l~~--~~~~~fD~V 116 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVS----DNMQFIHCAAQDIAQ--HLETPVDLI 116 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCc----cceEEEEcCHHHHhh--hcCCCCCEE
Confidence 35679999999999999999999999999999 89999999999887754 456776655433211 234689999
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
++..++++......+++.+.++|+|||.+++.....
T Consensus 117 ~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 117 LFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred EehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence 999999988888999999999999999998775443
No 24
>PRK14968 putative methyltransferase; Provisional
Probab=99.54 E-value=6.4e-13 Score=111.44 Aligned_cols=156 Identities=19% Similarity=0.200 Sum_probs=107.7
Q ss_pred cchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEE
Q 023543 100 WDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVV 178 (281)
Q Consensus 100 W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~ 178 (281)
++.+.++++++.. .++++|||+|||+|..++.++..+.+|+++|+ +++++.+++|+..++... ..+.+
T Consensus 9 ~~~~~~l~~~~~~--------~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~---~~~~~ 77 (188)
T PRK14968 9 AEDSFLLAENAVD--------KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRN---NGVEV 77 (188)
T ss_pred chhHHHHHHhhhc--------cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCC---cceEE
Confidence 5667777777652 46789999999999999999988889999999 889999999999887641 12566
Q ss_pred EEEecCCCCCCCcCCCCCcEEEEccccCCC---------------------CcHHHHHHHHHHhhCCCcEEEEEEeeeCh
Q 023543 179 TELTWGDDPDQDLIQPLPDYVLGSDVIYSE---------------------GAVGDLLDTLLQLCGTQTTIFLAGELRND 237 (281)
Q Consensus 179 ~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~---------------------~~~~~ll~~l~~ll~~~g~~~l~~~~r~~ 237 (281)
...|+.+. +...+||+|+++...+.. ..++.+++.+.++|+|+|.+++.......
T Consensus 78 ~~~d~~~~----~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~ 153 (188)
T PRK14968 78 IRSDLFEP----FRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTG 153 (188)
T ss_pred Eecccccc----ccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCC
Confidence 66555332 223479999987655431 12567899999999999987776543221
Q ss_pred hHHHHHHHHHh-cCCeEEEEecCCCCCCCCCCcEEEEEEE
Q 023543 238 SVLEYFLEAAM-KDFVIGRVEQTQWHPDYCSPRVVVYILV 276 (281)
Q Consensus 238 ~~~~~fl~~~~-~~f~v~~i~~~~~~~~~~~~~~~i~~~~ 276 (281)
.+.+.+.+. .+|.+..+.... +..+.+.++..+
T Consensus 154 --~~~l~~~~~~~g~~~~~~~~~~----~~~~~~~~~~~~ 187 (188)
T PRK14968 154 --EDEVLEYLEKLGFEAEVVAEEK----FPFEELIVLELV 187 (188)
T ss_pred --HHHHHHHHHHCCCeeeeeeecc----cCCceEEEEEEe
Confidence 122333443 388877665422 344566655544
No 25
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.51 E-value=2.9e-13 Score=115.06 Aligned_cols=101 Identities=15% Similarity=0.135 Sum_probs=80.2
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++++|||+|||+|..++.+++.|.+|+++|+ +.+++.+++++..+++. +.+...+... ..+ .++||+|
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~------v~~~~~d~~~---~~~-~~~fD~I 98 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLP------LRTDAYDINA---AAL-NEDYDFI 98 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCC------ceeEeccchh---ccc-cCCCCEE
Confidence 45679999999999999999999999999999 88999999998877653 3334433321 112 3579999
Q ss_pred EEccccCCC--CcHHHHHHHHHHhhCCCcEEEEE
Q 023543 200 LGSDVIYSE--GAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 200 ia~d~iy~~--~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
+++.++++. .....+++.+.++|+|||.+++.
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 99 FSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred EEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 999988763 56789999999999999985554
No 26
>PRK14967 putative methyltransferase; Provisional
Probab=99.51 E-value=1.6e-12 Score=112.83 Aligned_cols=139 Identities=19% Similarity=0.164 Sum_probs=99.3
Q ss_pred hHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEE
Q 023543 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVT 179 (281)
Q Consensus 102 ~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~ 179 (281)
.+.++++++... ...++.+|||+|||+|.+++.+++.++ +|+++|+ +.+++.+++|+..++.. +.+.
T Consensus 21 ds~~l~~~l~~~-----~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~------~~~~ 89 (223)
T PRK14967 21 DTQLLADALAAE-----GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVD------VDVR 89 (223)
T ss_pred cHHHHHHHHHhc-----ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCe------eEEE
Confidence 467788887643 124578999999999999999998776 8999999 88999999999988643 5556
Q ss_pred EEecCCCCCCCcCCCCCcEEEEccccCCCC---------------------cHHHHHHHHHHhhCCCcEEEEEEeeeChh
Q 023543 180 ELTWGDDPDQDLIQPLPDYVLGSDVIYSEG---------------------AVGDLLDTLLQLCGTQTTIFLAGELRNDS 238 (281)
Q Consensus 180 ~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~---------------------~~~~ll~~l~~ll~~~g~~~l~~~~r~~~ 238 (281)
..++.+. +...+||+|+++...+... .+..+++.+.++|++||.+++.......
T Consensus 90 ~~d~~~~----~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~- 164 (223)
T PRK14967 90 RGDWARA----VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSG- 164 (223)
T ss_pred ECchhhh----ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccC-
Confidence 6555332 2346899999865433211 1567888899999999998887554422
Q ss_pred HHHHHHHHHh-cCCeEEEEe
Q 023543 239 VLEYFLEAAM-KDFVIGRVE 257 (281)
Q Consensus 239 ~~~~fl~~~~-~~f~v~~i~ 257 (281)
...++..+. .+|.++.+.
T Consensus 165 -~~~~~~~l~~~g~~~~~~~ 183 (223)
T PRK14967 165 -VERTLTRLSEAGLDAEVVA 183 (223)
T ss_pred -HHHHHHHHHHCCCCeEEEE
Confidence 233555555 477766653
No 27
>PLN02244 tocopherol O-methyltransferase
Probab=99.50 E-value=3.3e-13 Score=124.25 Aligned_cols=105 Identities=16% Similarity=0.067 Sum_probs=88.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc-CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL-GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~-g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.++++|||+|||+|..+..+++. +++|+++|+ +.+++.+++++..++.. .++.+...|..+ ..+.+.+||+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~----~~v~~~~~D~~~---~~~~~~~FD~ 189 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLS----DKVSFQVADALN---QPFEDGQFDL 189 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCC----CceEEEEcCccc---CCCCCCCccE
Confidence 46789999999999999988874 789999999 88999999999887764 467777755432 2345678999
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
|++..++++..+...+++.+.++|+|||.++++.
T Consensus 190 V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 190 VWSMESGEHMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred EEECCchhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 9999999998889999999999999999998865
No 28
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.48 E-value=2.1e-13 Score=101.03 Aligned_cols=93 Identities=17% Similarity=0.196 Sum_probs=76.0
Q ss_pred EEECCCcCHHHHHHHHc-CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccc
Q 023543 127 VELGSGCGLVGCIAALL-GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDV 204 (281)
Q Consensus 127 LELGcGtG~~~i~~a~~-g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~ 204 (281)
||+|||+|..+..+++. +.+|+++|+ +++++.++++....+ +.+...+. .+..+.+.+||+|++..+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~--------~~~~~~d~---~~l~~~~~sfD~v~~~~~ 69 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG--------VSFRQGDA---EDLPFPDNSFDVVFSNSV 69 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST--------EEEEESBT---TSSSS-TT-EEEEEEESH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC--------chheeehH---HhCccccccccccccccc
Confidence 89999999999999998 789999999 788999988766542 33555443 334566789999999999
Q ss_pred cCCCCcHHHHHHHHHHhhCCCcEEEE
Q 023543 205 IYSEGAVGDLLDTLLQLCGTQTTIFL 230 (281)
Q Consensus 205 iy~~~~~~~ll~~l~~ll~~~g~~~l 230 (281)
+++......+++.+.+.|||||.+++
T Consensus 70 ~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 70 LHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred eeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 99999999999999999999999875
No 29
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.47 E-value=6.2e-13 Score=119.66 Aligned_cols=102 Identities=19% Similarity=0.213 Sum_probs=82.5
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++++|||+|||+|..++.+++.|.+|+++|+ +.+++.+++|+..+++. +.+...|... .. ...+||+|
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~------v~~~~~D~~~---~~-~~~~fD~I 188 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLN------IRTGLYDINS---AS-IQEEYDFI 188 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCc------eEEEEechhc---cc-ccCCccEE
Confidence 45679999999999999999999999999999 78999999999887653 4555544322 11 25689999
Q ss_pred EEccccCCC--CcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 200 LGSDVIYSE--GAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 200 ia~d~iy~~--~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
++..++++. ...+.+++.+.++|+|||.+++..
T Consensus 189 ~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 189 LSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred EEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 999988763 478899999999999999966543
No 30
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.46 E-value=8.4e-13 Score=115.22 Aligned_cols=109 Identities=15% Similarity=0.110 Sum_probs=81.8
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc-C--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL-G--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~-g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.+|.+|||+|||||.++..+++. + .+|+++|+ +.|++.+++++...+.. ++.+...|-. +..+.+.+|
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-----~i~~v~~da~---~lp~~d~sf 117 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-----NIEFVQGDAE---DLPFPDNSF 117 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT-------SEEEEE-BTT---B--S-TT-E
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-----CeeEEEcCHH---HhcCCCCce
Confidence 56889999999999999988874 3 47999999 89999999999887654 6777775533 344567899
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeCh
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRND 237 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~ 237 (281)
|+|.++-.+.+..+.+..++.+.++|||||.+.+....+..
T Consensus 118 D~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~ 158 (233)
T PF01209_consen 118 DAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPR 158 (233)
T ss_dssp EEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred eEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCC
Confidence 99999999999889999999999999999998887766553
No 31
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.45 E-value=1.5e-12 Score=113.27 Aligned_cols=106 Identities=11% Similarity=0.103 Sum_probs=90.6
Q ss_pred CCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
+|.+|||+|||||-.++.+++.. ++|+++|+ +.||+.+++.+..-+.. .+.+...+ ....++++.+||+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~-----~i~fv~~d---Ae~LPf~D~sFD~ 122 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQ-----NVEFVVGD---AENLPFPDNSFDA 122 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCcc-----ceEEEEec---hhhCCCCCCccCE
Confidence 78999999999999999999865 68999999 88999999988876554 36666644 4455578899999
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
|.++-.+.+..+.+..++.+.|.|||||++++....+
T Consensus 123 vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~ 159 (238)
T COG2226 123 VTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSK 159 (238)
T ss_pred EEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 9999999999999999999999999999887776554
No 32
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=1.1e-11 Score=110.91 Aligned_cols=110 Identities=20% Similarity=0.272 Sum_probs=81.1
Q ss_pred eEEEECCCcCHHHHHHHHcCC--EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEE
Q 023543 125 KIVELGSGCGLVGCIAALLGA--QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLG 201 (281)
Q Consensus 125 ~VLELGcGtG~~~i~~a~~g~--~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia 201 (281)
+|||||||||.+++.+++.+. +|+++|+ +++++.|++|+..|++. ++.+...+|..... ++||+||+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~-----~~~~~~~dlf~~~~-----~~fDlIVs 182 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLV-----RVLVVQSDLFEPLR-----GKFDLIVS 182 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCc-----cEEEEeeecccccC-----CceeEEEe
Confidence 899999999999999998765 8999999 89999999999999873 34444437754322 37888887
Q ss_pred ccccCCCC-------------------------cHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHH
Q 023543 202 SDVIYSEG-------------------------AVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFL 244 (281)
Q Consensus 202 ~d~iy~~~-------------------------~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl 244 (281)
+...-..+ .+..++..+.+.|+|+|.+++-........+...+
T Consensus 183 NPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~ 250 (280)
T COG2890 183 NPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALF 250 (280)
T ss_pred CCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHH
Confidence 54432211 26778888899999999887766645544434343
No 33
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.43 E-value=1.3e-12 Score=110.16 Aligned_cols=103 Identities=18% Similarity=0.189 Sum_probs=80.2
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
..+++++||||||.|..++.+|.+|..|+++|+ +.+++.+++-++.+++. +.....|..+. .+ ...||+
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~------i~~~~~Dl~~~---~~-~~~yD~ 97 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLD------IRTRVADLNDF---DF-PEEYDF 97 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-T------EEEEE-BGCCB---S--TTTEEE
T ss_pred hcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCce------eEEEEecchhc---cc-cCCcCE
Confidence 357889999999999999999999999999999 67899998888877664 67777665432 22 367999
Q ss_pred EEEccccCC--CCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 199 VLGSDVIYS--EGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 199 Iia~d~iy~--~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
|++.-++++ .+..+.+++.+...++|||.+++..
T Consensus 98 I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 98 IVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp EEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 998766654 6788999999999999999977643
No 34
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.42 E-value=4.1e-12 Score=109.90 Aligned_cols=126 Identities=17% Similarity=0.120 Sum_probs=96.8
Q ss_pred CeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 124 KKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
++|||+|||+|..+..+++. +.+|+++|+ +++++.+++++...+.. .++.+...|..+. .. ..+||+|+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~----~~i~~~~~d~~~~---~~-~~~fD~I~ 72 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQ----GRIRIFYRDSAKD---PF-PDTYDLVF 72 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCC----cceEEEecccccC---CC-CCCCCEee
Confidence 47999999999998888874 468999999 88899999999887765 4677777665332 11 35799999
Q ss_pred EccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeC-------------hhHHHHHHHHHh-cCCeEEEEe
Q 023543 201 GSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRN-------------DSVLEYFLEAAM-KDFVIGRVE 257 (281)
Q Consensus 201 a~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~-------------~~~~~~fl~~~~-~~f~v~~i~ 257 (281)
+..++++....+.+++.+.++|+|||.+++...... ......|.+.+. .||.+....
T Consensus 73 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~ 143 (224)
T smart00828 73 GFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGV 143 (224)
T ss_pred hHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeE
Confidence 999999988899999999999999999988764321 011234555555 489876654
No 35
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.42 E-value=4.7e-12 Score=112.47 Aligned_cols=110 Identities=11% Similarity=0.060 Sum_probs=85.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc-C--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL-G--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~-g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++.+|||+|||+|.++..+++. + .+|+++|+ ++|++.++++....... ...++.+...+.. +..+.+.+|
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~--~~~~i~~~~~d~~---~lp~~~~sf 146 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKS--CYKNIEWIEGDAT---DLPFDDCYF 146 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhc--cCCCeEEEEcccc---cCCCCCCCE
Confidence 45789999999999999888864 4 48999999 88999998775422111 0135666665533 233456789
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
|+|+++.++++..+...+++.+.++|+|||.+++....+
T Consensus 147 D~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 147 DAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred eEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence 999999999998899999999999999999988876544
No 36
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.42 E-value=3.1e-12 Score=116.88 Aligned_cols=105 Identities=19% Similarity=0.087 Sum_probs=80.2
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
..+|++|||||||+|..++.++..|+ .|+++|. +.++..++......+.. .++.+...+..+. .. +.+||
T Consensus 120 ~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~----~~i~~~~~d~e~l---p~-~~~FD 191 (322)
T PRK15068 120 PLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGND----QRAHLLPLGIEQL---PA-LKAFD 191 (322)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCC----CCeEEEeCCHHHC---CC-cCCcC
Confidence 36789999999999999999998887 5999999 55664433222211111 3577777655432 22 56899
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+|++..++|+..+...+++.+.+.|+|||.+++..
T Consensus 192 ~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 192 TVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred EEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 99999999999999999999999999999998764
No 37
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.41 E-value=3.2e-12 Score=113.61 Aligned_cols=104 Identities=14% Similarity=0.142 Sum_probs=82.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.++.+|||||||+|..+..++. .+++|+++|+ +.+++.++++.... .++.+...+.. ...+.+.+||+
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~-------~~i~~~~~D~~---~~~~~~~~FD~ 120 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK-------NKIEFEANDIL---KKDFPENTFDM 120 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC-------CceEEEECCcc---cCCCCCCCeEE
Confidence 4678999999999998888776 5779999999 88999998875431 35666665543 22344578999
Q ss_pred EEEccccCCCC--cHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 199 VLGSDVIYSEG--AVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 199 Iia~d~iy~~~--~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
|++.+++++.. ....+++.+.++|+|||.++++...
T Consensus 121 V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 121 IYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred EEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 99999887743 7899999999999999999988653
No 38
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.41 E-value=1.7e-11 Score=103.38 Aligned_cols=117 Identities=21% Similarity=0.153 Sum_probs=84.7
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.++.+|||+|||+|.+++.+++.+ .+|+++|+ +++++.+++|+..++.. ++.+...+.. .. ...+||
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-----~i~~~~~d~~----~~-~~~~~D 99 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-----NIDIIPGEAP----IE-LPGKAD 99 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-----CeEEEecCch----hh-cCcCCC
Confidence 467899999999999999998754 58999999 88999999999988654 4665553321 11 235799
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCe
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFV 252 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~ 252 (281)
+|++.... ..+..+++.+.+.|+|||.+++...... ....+...+. .+|.
T Consensus 100 ~v~~~~~~---~~~~~~l~~~~~~Lk~gG~lv~~~~~~~--~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 100 AIFIGGSG---GNLTAIIDWSLAHLHPGGRLVLTFILLE--NLHSALAHLEKCGVS 150 (187)
T ss_pred EEEECCCc---cCHHHHHHHHHHhcCCCeEEEEEEecHh--hHHHHHHHHHHCCCC
Confidence 99986543 3467899999999999999887654322 2233444444 3653
No 39
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.41 E-value=3.1e-12 Score=114.10 Aligned_cols=119 Identities=14% Similarity=0.137 Sum_probs=88.9
Q ss_pred hHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc-CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEE
Q 023543 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL-GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVT 179 (281)
Q Consensus 102 ~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~-g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~ 179 (281)
+-....+++.+.+. ..+|.+|||||||.|-+++.+|+. |++|+++.+ ++..+.+++.+...++. +++.+.
T Consensus 46 AQ~~k~~~~~~~~~----l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~----~~v~v~ 117 (273)
T PF02353_consen 46 AQERKLDLLCEKLG----LKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLE----DRVEVR 117 (273)
T ss_dssp HHHHHHHHHHTTTT------TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSS----STEEEE
T ss_pred HHHHHHHHHHHHhC----CCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCC----CceEEE
Confidence 33344455554432 467899999999999999999986 999999999 77899999999998876 578888
Q ss_pred EEecCCCCCCCcCCCCCcEEEEccccCCC--CcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 180 ELTWGDDPDQDLIQPLPDYVLGSDVIYSE--GAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 180 ~l~w~~~~~~~~~~~~fD~Iia~d~iy~~--~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
..||.+. .++||.|++.+++.+. ...+.+++.+.++|+|||++++....
T Consensus 118 ~~D~~~~------~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 118 LQDYRDL------PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp ES-GGG---------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred Eeecccc------CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 8777532 2489999999999875 67899999999999999998876544
No 40
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.41 E-value=3.1e-12 Score=116.07 Aligned_cols=105 Identities=18% Similarity=0.096 Sum_probs=79.3
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
..+|++|||+|||+|.....++..|+ .|+++|. +.++..++......... .++.+...+..+.. ...+||
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~----~~v~~~~~~ie~lp----~~~~FD 190 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDND----KRAILEPLGIEQLH----ELYAFD 190 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccC----CCeEEEECCHHHCC----CCCCcC
Confidence 46789999999999999988888887 5999999 66776543322211111 24555655543321 124799
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+|++..++|+..+...+++.+++.|+|||.+++..
T Consensus 191 ~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 191 TVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred EEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence 99999999999999999999999999999998764
No 41
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.40 E-value=4.8e-12 Score=110.00 Aligned_cols=105 Identities=11% Similarity=0.044 Sum_probs=84.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++++|||+|||+|..+..++.. +.+|+++|+ +.+++.+++|+..++.. ++.+...+..+ ..+.+.+|
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~---~~~~~~~f 115 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLH-----NVELVHGNAME---LPFDDNSF 115 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCC-----ceEEEEechhc---CCCCCCCc
Confidence 45789999999999999988864 358999999 88999999998876543 56666655432 22345789
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
|+|+++.++.+......+++.+.++|+|||.+++...
T Consensus 116 D~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 116 DYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred cEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 9999998888888889999999999999999887653
No 42
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.40 E-value=3.4e-12 Score=112.42 Aligned_cols=106 Identities=16% Similarity=0.145 Sum_probs=83.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHH----cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAAL----LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~----~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
.++.+|||||||+|..++.+++ .+.+|+++|+ +.|++.+++|+..++.. .++.+...+..+ ++.+.
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~----~~v~~~~~d~~~-----~~~~~ 125 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP----TPVDVIEGDIRD-----IAIEN 125 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC----CCeEEEeCChhh-----CCCCC
Confidence 4678999999999998887776 3568999999 89999999999887654 357776655432 12246
Q ss_pred CcEEEEccccCCC--CcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 196 PDYVLGSDVIYSE--GAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 196 fD~Iia~d~iy~~--~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
+|+|+++-++++. .....+++.+.+.|+|||.++++...+
T Consensus 126 ~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~ 167 (247)
T PRK15451 126 ASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS 167 (247)
T ss_pred CCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 8999998887664 345789999999999999999987553
No 43
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.39 E-value=4.9e-12 Score=112.06 Aligned_cols=107 Identities=18% Similarity=0.199 Sum_probs=92.4
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHc-CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALL-GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~-g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
..+|++|||||||.|.+++.+|+. |.+|+++++ ++..+.+++.+...++. .++++...||.+. +++||
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~----~~v~v~l~d~rd~------~e~fD 139 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE----DNVEVRLQDYRDF------EEPFD 139 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCC----cccEEEecccccc------ccccc
Confidence 568999999999999999999985 899999999 77899999999998887 6888888888643 34599
Q ss_pred EEEEccccCCC--CcHHHHHHHHHHhhCCCcEEEEEEeeeC
Q 023543 198 YVLGSDVIYSE--GAVGDLLDTLLQLCGTQTTIFLAGELRN 236 (281)
Q Consensus 198 ~Iia~d~iy~~--~~~~~ll~~l~~ll~~~g~~~l~~~~r~ 236 (281)
-|++.+++.+. ...+.+++.+.++|+|+|.+++-...+.
T Consensus 140 rIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~ 180 (283)
T COG2230 140 RIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGP 180 (283)
T ss_pred eeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCC
Confidence 99999999874 5599999999999999999887765543
No 44
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.39 E-value=3.5e-11 Score=112.16 Aligned_cols=140 Identities=16% Similarity=0.150 Sum_probs=95.8
Q ss_pred chHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceE
Q 023543 101 DSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAV 177 (281)
Q Consensus 101 ~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~ 177 (281)
+.+..+.+++... ..++++|||+|||+|.+++.+++. +.+|+++|+ +++++.+++|++.++. ++.
T Consensus 236 peTE~LVe~aL~~------l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~------rV~ 303 (423)
T PRK14966 236 PETEHLVEAVLAR------LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA------RVE 303 (423)
T ss_pred ccHHHHHHHhhhc------cCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------cEE
Confidence 4566777777653 124579999999999999988863 568999999 8899999999998753 477
Q ss_pred EEEEecCCCCCCCcCCCCCcEEEEccccCCC-------------------------CcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 178 VTELTWGDDPDQDLIQPLPDYVLGSDVIYSE-------------------------GAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 178 ~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~-------------------------~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+...||.+.... ...+||+|+++.+.... ..+..+++.+.++|+|+|.+++..
T Consensus 304 fi~gDl~e~~l~--~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 304 FAHGSWFDTDMP--SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred EEEcchhccccc--cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 777776432110 13479999986542211 124578888889999999987765
Q ss_pred eeeChhHHHHHHHHHhcCCeEEEE
Q 023543 233 ELRNDSVLEYFLEAAMKDFVIGRV 256 (281)
Q Consensus 233 ~~r~~~~~~~fl~~~~~~f~v~~i 256 (281)
.....+.+..++.. .+|....+
T Consensus 382 G~~Q~e~V~~ll~~--~Gf~~v~v 403 (423)
T PRK14966 382 GFDQGAAVRGVLAE--NGFSGVET 403 (423)
T ss_pred CccHHHHHHHHHHH--CCCcEEEE
Confidence 54444444444432 47764444
No 45
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.39 E-value=1.1e-12 Score=106.80 Aligned_cols=100 Identities=21% Similarity=0.286 Sum_probs=80.4
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
..++++|||+|||+|..+..++..|.+|+++|+ +.+++. . +......+-. .....+.+||+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~------~---------~~~~~~~~~~---~~~~~~~~fD~ 81 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK------R---------NVVFDNFDAQ---DPPFPDGSFDL 81 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH------T---------TSEEEEEECH---THHCHSSSEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh------h---------hhhhhhhhhh---hhhccccchhh
Confidence 357889999999999999999999999999999 777766 1 1222222110 11234578999
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeCh
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRND 237 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~ 237 (281)
|++++++++..+...+++.+.++|+|||.++++...+..
T Consensus 82 i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~ 120 (161)
T PF13489_consen 82 IICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDD 120 (161)
T ss_dssp EEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTS
T ss_pred HhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcc
Confidence 999999999999999999999999999999999988753
No 46
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.39 E-value=6.5e-12 Score=112.04 Aligned_cols=105 Identities=17% Similarity=0.199 Sum_probs=85.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHH-cCC--EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAAL-LGA--QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~-~g~--~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++.+|||+|||+|..++.+++ .+. +|+++|+ +++++.+++|+..++.. ++.+...++.+ ..+.+.+|
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-----~v~~~~~d~~~---l~~~~~~f 147 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-----NVEFRLGEIEA---LPVADNSV 147 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-----CEEEEEcchhh---CCCCCCce
Confidence 4688999999999998887765 343 6999999 88999999999887653 56666655432 22345689
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
|+|++..++++....+.+++.+.++|+|||.++++..
T Consensus 148 D~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 148 DVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred eEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9999999988888889999999999999999988653
No 47
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.39 E-value=9.1e-13 Score=102.17 Aligned_cols=106 Identities=19% Similarity=0.218 Sum_probs=83.7
Q ss_pred CCeEEEECCCcCHHHHHHHHcC-CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 123 GKKIVELGSGCGLVGCIAALLG-AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~~g-~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
|.+|||+|||+|.+.+.+++.+ .+++++|+ +.+++.++.|+..++.. .++.+...|+.+.. ..+...+||+|+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~----~~~~~~~~D~~~~~-~~~~~~~~D~Iv 75 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLD----DRVEVIVGDARDLP-EPLPDGKFDLIV 75 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTT----TTEEEEESHHHHHH-HTCTTT-EEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCC----ceEEEEECchhhch-hhccCceeEEEE
Confidence 5689999999999999999988 78999999 88999999999998775 56888887764322 124568899999
Q ss_pred EccccCCC--------CcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 201 GSDVIYSE--------GAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 201 a~d~iy~~--------~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
++-..... .....+++.+.++|+|+|.+++...
T Consensus 76 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 76 TNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp E--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 87776542 2467899999999999999887643
No 48
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.38 E-value=2.3e-11 Score=103.65 Aligned_cols=126 Identities=17% Similarity=0.156 Sum_probs=89.4
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
..++.+|||+|||+|.+++.+++. +.+|+++|+ +++++.+++|+..+++. .++.+...+..+... ..+++
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~----~~v~~~~~d~~~~l~--~~~~~ 111 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL----NNIVLIKGEAPEILF--TINEK 111 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC----CCeEEEEechhhhHh--hcCCC
Confidence 457889999999999999988863 358999999 88999999999998743 356666654332111 12367
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEE
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRV 256 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i 256 (281)
||.|+... ....+..+++.+.++|+|||.+++... ..+........+. .+|.++.+
T Consensus 112 ~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~--~~~~~~~~~~~l~~~g~~~~~~ 168 (198)
T PRK00377 112 FDRIFIGG---GSEKLKEIISASWEIIKKGGRIVIDAI--LLETVNNALSALENIGFNLEIT 168 (198)
T ss_pred CCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEEee--cHHHHHHHHHHHHHcCCCeEEE
Confidence 99999843 234568899999999999999876433 3333444555554 47754443
No 49
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.38 E-value=5e-12 Score=126.55 Aligned_cols=148 Identities=16% Similarity=0.167 Sum_probs=107.0
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.+|++|||||||+|.+++.+++.|+ +|+++|+ +.+++.+++|++.|++. ..++.+...|..+.... .+.+||+
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~---~~~v~~i~~D~~~~l~~--~~~~fDl 611 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLS---GRQHRLIQADCLAWLKE--AREQFDL 611 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC---ccceEEEEccHHHHHHH--cCCCcCE
Confidence 4689999999999999999999887 5999999 88999999999999875 13577777664322111 1468999
Q ss_pred EEEccccCC-----------CCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEEecCCCCCCCC
Q 023543 199 VLGSDVIYS-----------EGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRVEQTQWHPDYC 266 (281)
Q Consensus 199 Iia~d~iy~-----------~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i~~~~~~~~~~ 266 (281)
|++.-..+. ...+..++..+.++|+|||.++++...+..... ...+. .|+.+..+......+++.
T Consensus 612 IilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~---~~~~~~~g~~~~~i~~~~~~~Dhp 688 (702)
T PRK11783 612 IFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMD---EEGLAKLGLKAEEITAKTLPPDFA 688 (702)
T ss_pred EEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChh---HHHHHhCCCeEEEEecCCCCCCCC
Confidence 887544322 124677899999999999999887665543321 22333 589999998888888875
Q ss_pred -CCcEE-EEEEE
Q 023543 267 -SPRVV-VYILV 276 (281)
Q Consensus 267 -~~~~~-i~~~~ 276 (281)
...++ .|.++
T Consensus 689 ~~~~~~~~~~~~ 700 (702)
T PRK11783 689 RNPKIHNCWLIT 700 (702)
T ss_pred CCcccceeEEEe
Confidence 33333 55554
No 50
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.38 E-value=7.9e-12 Score=120.02 Aligned_cols=106 Identities=14% Similarity=0.153 Sum_probs=86.7
Q ss_pred cCCCeEEEECCCcCHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.++.+|||+|||+|.+++.+++ .+.+|+++|+ +++++.+++|+.... .++.+...|+.. ..+++.+||+
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~------~~v~~~~~d~~~---~~~~~~~fD~ 335 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK------CSVEFEVADCTK---KTYPDNSFDV 335 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC------CceEEEEcCccc---CCCCCCCEEE
Confidence 3577999999999999988886 5789999999 789999998875321 357777766543 2334568999
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
|++.+++++..+.+.+++.+.++|+|||.+++....+
T Consensus 336 I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 336 IYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred EEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 9999999999999999999999999999999886543
No 51
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.38 E-value=1.8e-13 Score=103.29 Aligned_cols=96 Identities=16% Similarity=0.103 Sum_probs=60.8
Q ss_pred EEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEcc
Q 023543 127 VELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSD 203 (281)
Q Consensus 127 LELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d 203 (281)
||+|||+|.....+... +.+++++|+ +.|++.+++++...... +.....+.-.+.... ....+||+|+++.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~fD~V~~~~ 74 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND-----NFERLRFDVLDLFDY-DPPESFDLVVASN 74 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT--------EEEEE--SSS---C-CC----SEEEEE-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc-----ceeEEEeecCChhhc-ccccccceehhhh
Confidence 79999999988877775 668999999 88998888887776532 222233221111111 1125899999999
Q ss_pred ccCCCCcHHHHHHHHHHhhCCCcEE
Q 023543 204 VIYSEGAVGDLLDTLLQLCGTQTTI 228 (281)
Q Consensus 204 ~iy~~~~~~~ll~~l~~ll~~~g~~ 228 (281)
++++.+..+.+++.+.++|+|||.+
T Consensus 75 vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 75 VLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred hHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999999975
No 52
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.37 E-value=3.9e-11 Score=114.28 Aligned_cols=146 Identities=14% Similarity=0.091 Sum_probs=102.9
Q ss_pred HHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEE
Q 023543 103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTEL 181 (281)
Q Consensus 103 s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l 181 (281)
+..+.+++...+. ..++.+|||+|||+|.+++.+|+.+.+|+++|+ ++|++.+++|+..|+.. ++.+...
T Consensus 282 ~e~l~~~vl~~l~----~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~-----~v~~~~~ 352 (443)
T PRK13168 282 NQKMVARALEWLD----PQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLD-----NVTFYHA 352 (443)
T ss_pred HHHHHHHHHHHhc----CCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC-----ceEEEEe
Confidence 4556666655432 245789999999999999999998889999999 88999999999999865 5888887
Q ss_pred ecCCCCC-CCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHH-hcCCeEEEEecC
Q 023543 182 TWGDDPD-QDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAA-MKDFVIGRVEQT 259 (281)
Q Consensus 182 ~w~~~~~-~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~-~~~f~v~~i~~~ 259 (281)
|+.+... ..+.+.+||+|+. |.-|.- ...+++.+.+ +++++++|+++... ++.+=+..+ ..||+++.+.--
T Consensus 353 d~~~~l~~~~~~~~~fD~Vi~-dPPr~g--~~~~~~~l~~-~~~~~ivyvSCnp~---tlaRDl~~L~~~gY~l~~i~~~ 425 (443)
T PRK13168 353 NLEEDFTDQPWALGGFDKVLL-DPPRAG--AAEVMQALAK-LGPKRIVYVSCNPA---TLARDAGVLVEAGYRLKRAGML 425 (443)
T ss_pred ChHHhhhhhhhhcCCCCEEEE-CcCCcC--hHHHHHHHHh-cCCCeEEEEEeChH---HhhccHHHHhhCCcEEEEEEEe
Confidence 7754322 1123457998876 444443 3456677766 48899999998532 222223333 468999999755
Q ss_pred CCCCC
Q 023543 260 QWHPD 264 (281)
Q Consensus 260 ~~~~~ 264 (281)
.+-|.
T Consensus 426 DmFP~ 430 (443)
T PRK13168 426 DMFPH 430 (443)
T ss_pred ccCCC
Confidence 54443
No 53
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.37 E-value=4.7e-11 Score=105.44 Aligned_cols=142 Identities=14% Similarity=0.122 Sum_probs=94.1
Q ss_pred hHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEE
Q 023543 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVV 178 (281)
Q Consensus 102 ~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~ 178 (281)
.+..|.+++...... ...+.+|||||||+|.+++.+++. +.+|+++|+ +.+++.+++|+..|+. .+
T Consensus 69 ~Te~Lv~~~l~~~~~---~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~--------~~ 137 (251)
T TIGR03704 69 RTEFLVDEAAALARP---RSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGG--------TV 137 (251)
T ss_pred cHHHHHHHHHHhhcc---cCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--------EE
Confidence 355666665543210 123458999999999999998864 558999999 8899999999988752 34
Q ss_pred EEEecCCCCCCCcCCCCCcEEEEccccCCCC--------------------------cHHHHHHHHHHhhCCCcEEEEEE
Q 023543 179 TELTWGDDPDQDLIQPLPDYVLGSDVIYSEG--------------------------AVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 179 ~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~--------------------------~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
...|+.+..... ...+||+|+++-...... .+..+++.+.++|+|+|.+++..
T Consensus 138 ~~~D~~~~l~~~-~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 138 HEGDLYDALPTA-LRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred EEeechhhcchh-cCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 555554322211 135799988765432110 14578888889999999998876
Q ss_pred eeeChhHHHHHHHHHh-cCCeEEEEec
Q 023543 233 ELRNDSVLEYFLEAAM-KDFVIGRVEQ 258 (281)
Q Consensus 233 ~~r~~~~~~~fl~~~~-~~f~v~~i~~ 258 (281)
...... .....+. .+|....+..
T Consensus 217 ~~~~~~---~v~~~l~~~g~~~~~~~~ 240 (251)
T TIGR03704 217 SERQAP---LAVEAFARAGLIARVASS 240 (251)
T ss_pred CcchHH---HHHHHHHHCCCCceeeEc
Confidence 543332 3444444 4887766653
No 54
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.37 E-value=6.1e-12 Score=107.55 Aligned_cols=126 Identities=13% Similarity=-0.041 Sum_probs=90.1
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.+.+|||+|||+|..+..+++. +.+|+++|+ +++++.+++|+..++.. ++.+...++.+..+..+...+||+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~-----~v~~~~~d~~~~l~~~~~~~~~D~ 114 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLT-----NLRLLCGDAVEVLLDMFPDGSLDR 114 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCC-----CEEEEecCHHHHHHHHcCccccce
Confidence 5679999999999999988774 357999999 88999999999988653 577777665111111134567999
Q ss_pred EEEccccCCCC--------cHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEE
Q 023543 199 VLGSDVIYSEG--------AVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIG 254 (281)
Q Consensus 199 Iia~d~iy~~~--------~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~ 254 (281)
|++.....+.. ..+.+++.+.++|+|+|.++++.... ......++.+. .++.+.
T Consensus 115 V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~--~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 115 IYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE--GYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred EEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH--HHHHHHHHHHHhCccccc
Confidence 99864322111 25789999999999999999876533 33444556665 366554
No 55
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.36 E-value=9.9e-12 Score=107.39 Aligned_cols=128 Identities=16% Similarity=0.141 Sum_probs=96.6
Q ss_pred cchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEE
Q 023543 100 WDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVV 178 (281)
Q Consensus 100 W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~ 178 (281)
|........|+...+..+.....+.+|||+|||+|..+..+++.+.+|+++|. +.+++.+++|+..++.. ++.+
T Consensus 23 ~~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~-----~~~~ 97 (224)
T TIGR01983 23 HKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLL-----KIEY 97 (224)
T ss_pred HHhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCC-----ceEE
Confidence 33444456777665443222346889999999999999988888889999999 78899999998877542 3555
Q ss_pred EEEecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 179 TELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 179 ~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
...+..+.... .+.+||+|++..++++......+++.+.+.|+++|.++++...
T Consensus 98 ~~~d~~~~~~~--~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 98 RCTSVEDLAEK--GAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred EeCCHHHhhcC--CCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 55443322211 1368999999999999899999999999999999998887643
No 56
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.35 E-value=5e-11 Score=103.48 Aligned_cols=105 Identities=12% Similarity=0.065 Sum_probs=85.6
Q ss_pred CCCeEEEECCCcCHHHHHHHHcC---CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 122 HGKKIVELGSGCGLVGCIAALLG---AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g---~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
++.+|||+|||+|..+..++..+ .+|+++|+ +.+++.+++|+..++.. .++.+...++.+. .....+||
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~----~~~~~~~~d~~~~---~~~~~~~D 123 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLS----GNVEFVQGDAEAL---PFPDNSFD 123 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccc----cCeEEEecccccC---CCCCCCcc
Confidence 57899999999999999888765 68999999 78899999998776443 3566666555432 23346899
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
+|+++.++++......+++.+.++|+|+|.+++...
T Consensus 124 ~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 124 AVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred EEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence 999999998888999999999999999999887654
No 57
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.35 E-value=4.3e-11 Score=93.22 Aligned_cols=102 Identities=23% Similarity=0.306 Sum_probs=77.5
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.++++|||+|||+|..++.+++. +.+|+++|+ +.+++.+++|+..++.. ++.+...+...... ...++||
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~~~D 90 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-----NIVIVEGDAPEALE--DSLPEPD 90 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-----ceEEEeccccccCh--hhcCCCC
Confidence 35779999999999999988875 358999999 78899999999988654 45555544221111 1235899
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+|+.... ....+.+++.+.++|+|+|.+++..
T Consensus 91 ~v~~~~~---~~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 91 RVFIGGS---GGLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred EEEECCc---chhHHHHHHHHHHHcCCCCEEEEEe
Confidence 9998653 2446789999999999999988764
No 58
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.35 E-value=7.7e-12 Score=110.22 Aligned_cols=100 Identities=15% Similarity=0.111 Sum_probs=80.5
Q ss_pred CCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 122 HGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
++++|||+|||+|..+..++..|.+|+++|+ +++++.++++... ..+...|+.+ ..+.+.+||+|+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~----------~~~~~~d~~~---~~~~~~~fD~V~ 108 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAA----------DHYLAGDIES---LPLATATFDLAW 108 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCC----------CCEEEcCccc---CcCCCCcEEEEE
Confidence 4679999999999999888888999999999 8899988876421 1233333322 224456899999
Q ss_pred EccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 201 GSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 201 a~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
++.++++..+...++..+.++|+|||.++++...
T Consensus 109 s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 109 SNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred ECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 9999998889999999999999999999988643
No 59
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.35 E-value=1.6e-11 Score=105.86 Aligned_cols=98 Identities=12% Similarity=0.122 Sum_probs=75.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC---EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA---QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~---~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++.+|||+|||+|..+..+++... +|+++|+ +++++.+++|+..++.. ++.+...|..+... ...+|
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~-----~v~~~~~d~~~~~~---~~~~f 147 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD-----NVIVIVGDGTQGWE---PLAPY 147 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-----CeEEEECCcccCCc---ccCCC
Confidence 5788999999999999999988643 5999999 88999999999998764 57777655432211 23589
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
|+|+..... ..+.+.+.+.|+|||++++..
T Consensus 148 D~Ii~~~~~------~~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 148 DRIYVTAAG------PKIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred CEEEEcCCc------ccccHHHHHhcCcCcEEEEEE
Confidence 999987554 334566788999999987754
No 60
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.34 E-value=2.5e-12 Score=115.76 Aligned_cols=106 Identities=18% Similarity=0.223 Sum_probs=87.3
Q ss_pred CccccCCCeEEEECCCcCHHHHHHHHcCCE-EEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 117 GMLLLHGKKIVELGSGCGLVGCIAALLGAQ-VILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 117 ~~~~~~~~~VLELGcGtG~~~i~~a~~g~~-V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
+...+++|.|||+|||||++++.+|+.|++ |+++|.+++.+.+++.+..|++. ..+.+..-... +..++-++
T Consensus 55 n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~----~ii~vi~gkvE---di~LP~eK 127 (346)
T KOG1499|consen 55 NKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLE----DVITVIKGKVE---DIELPVEK 127 (346)
T ss_pred chhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCcc----ceEEEeecceE---EEecCccc
Confidence 345799999999999999999999999985 99999999999999999999987 45666654332 22445688
Q ss_pred CcEEEEccc---cCCCCcHHHHHHHHHHhhCCCcEEE
Q 023543 196 PDYVLGSDV---IYSEGAVGDLLDTLLQLCGTQTTIF 229 (281)
Q Consensus 196 fD~Iia~d~---iy~~~~~~~ll~~l~~ll~~~g~~~ 229 (281)
.|+|++-.. +++++.++.++-+-.+.|+|||.++
T Consensus 128 VDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 128 VDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred eeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 999999555 4457889999999999999999754
No 61
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.34 E-value=9.9e-11 Score=101.22 Aligned_cols=166 Identities=16% Similarity=0.023 Sum_probs=102.0
Q ss_pred HHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCC----------
Q 023543 103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGD---------- 171 (281)
Q Consensus 103 s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~---------- 171 (281)
...|.+|+... ...++++|||+|||.|..++.+|..|.+|+++|+ +.+++.+. .++++...
T Consensus 23 ~~~L~~~~~~~-----~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~---~~~~l~~~~~~~~~~~~~ 94 (218)
T PRK13255 23 NPLLQKYWPAL-----ALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFF---AENGLTPQTRQSGEFEHY 94 (218)
T ss_pred CHHHHHHHHhh-----CCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHH---HHcCCCcccccccccccc
Confidence 45566676532 1235789999999999999999999999999999 78888653 22322100
Q ss_pred CCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCC--CCcHHHHHHHHHHhhCCCcEEEEEEeeeC------h---hHH
Q 023543 172 LRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYS--EGAVGDLLDTLLQLCGTQTTIFLAGELRN------D---SVL 240 (281)
Q Consensus 172 ~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~--~~~~~~ll~~l~~ll~~~g~~~l~~~~r~------~---~~~ 240 (281)
...++.+...|..+.... ..+.||.|+...++.+ ++.....++.+.++|+|||..++...... + -..
T Consensus 95 ~~~~v~~~~~D~~~l~~~--~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~ 172 (218)
T PRK13255 95 QAGEITIYCGDFFALTAA--DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSD 172 (218)
T ss_pred ccCceEEEECcccCCCcc--cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCH
Confidence 123455555443322111 1257899998776554 55678999999999999997444322111 1 012
Q ss_pred HHHHHHHhcCCeEEEEecCCCCC---C-----CCCCcEEEEEEEec
Q 023543 241 EYFLEAAMKDFVIGRVEQTQWHP---D-----YCSPRVVVYILVKK 278 (281)
Q Consensus 241 ~~fl~~~~~~f~v~~i~~~~~~~---~-----~~~~~~~i~~~~~k 278 (281)
+...+.+...|.++.+....... . ...-...+|.++||
T Consensus 173 ~el~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (218)
T PRK13255 173 EEVEALYAGCFEIELLERQDVLEDNPKFVKKGVSRLNEAVYLLERK 218 (218)
T ss_pred HHHHHHhcCCceEEEeeeccccccCchhhhcCcchhheEEEEEEeC
Confidence 33334444458888886543221 1 12235567777764
No 62
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.34 E-value=7e-11 Score=106.20 Aligned_cols=104 Identities=18% Similarity=0.187 Sum_probs=79.5
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
++++|||+|||+|.+++.+++. +.+|+++|+ +.+++.+++|+..|+.. .++.+...|+.+. +.+.+||+
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~----~~i~~~~~D~~~~----~~~~~fD~ 192 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLE----DRVTLIQSDLFAA----LPGRKYDL 192 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEECchhhc----cCCCCccE
Confidence 3579999999999999999985 468999999 88999999999999865 4677777665332 23357999
Q ss_pred EEEccccCC--------------C-----------CcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 199 VLGSDVIYS--------------E-----------GAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 199 Iia~d~iy~--------------~-----------~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
|+++..... + ..+..+++.+.++|+|||.+++-..
T Consensus 193 Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 193 IVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred EEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 998633211 1 1246788889999999999877554
No 63
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.33 E-value=2.9e-11 Score=103.56 Aligned_cols=99 Identities=16% Similarity=0.149 Sum_probs=75.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++.+|||+|||+|..+..+++. +.+|+++|+ +++++.+++|+..++.. .++.+...|..+... .+.+|
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~----~~v~~~~~d~~~~~~---~~~~f 143 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW----GVVEVYHGDGKRGLE---KHAPF 143 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----CcEEEEECCcccCCc---cCCCc
Confidence 46789999999999999888864 358999999 88999999999988764 356666655332211 24689
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
|+|++..... .+.+.+.+.|+|||++++..
T Consensus 144 D~Ii~~~~~~------~~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 144 DAIIVTAAAS------TIPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred cEEEEccCcc------hhhHHHHHhcCcCcEEEEEE
Confidence 9999887763 34467788999999987754
No 64
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.33 E-value=5.5e-11 Score=104.32 Aligned_cols=141 Identities=16% Similarity=0.159 Sum_probs=97.9
Q ss_pred cchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCce
Q 023543 100 WDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSA 176 (281)
Q Consensus 100 W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i 176 (281)
++.+..+.+++..... ..+++|||+|||+|.+++.++.. +.+|+++|+ +.+++.+++|+..++.. ++
T Consensus 70 ~~~~~~l~~~~l~~~~-----~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-----~~ 139 (251)
T TIGR03534 70 RPDTEELVEAALERLK-----KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-----NV 139 (251)
T ss_pred CCChHHHHHHHHHhcc-----cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----eE
Confidence 4556666666655421 24569999999999999999985 558999999 88999999999988764 57
Q ss_pred EEEEEecCCCCCCCcCCCCCcEEEEccccCCCC--------------------------cHHHHHHHHHHhhCCCcEEEE
Q 023543 177 VVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEG--------------------------AVGDLLDTLLQLCGTQTTIFL 230 (281)
Q Consensus 177 ~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~--------------------------~~~~ll~~l~~ll~~~g~~~l 230 (281)
.+...++.+. +.+.+||+|+++.+.+... .+..+++.+.++|+|||.+++
T Consensus 140 ~~~~~d~~~~----~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~ 215 (251)
T TIGR03534 140 TFLQSDWFEP----LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLL 215 (251)
T ss_pred EEEECchhcc----CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEE
Confidence 7777665432 2357899999865433211 124678899999999999988
Q ss_pred EEeeeChhHHHHHHHHHhcCCeEEEE
Q 023543 231 AGELRNDSVLEYFLEAAMKDFVIGRV 256 (281)
Q Consensus 231 ~~~~r~~~~~~~fl~~~~~~f~v~~i 256 (281)
.........+..++.. .+|....+
T Consensus 216 ~~~~~~~~~~~~~l~~--~gf~~v~~ 239 (251)
T TIGR03534 216 EIGYDQGEAVRALFEA--AGFADVET 239 (251)
T ss_pred EECccHHHHHHHHHHh--CCCCceEE
Confidence 7654443333444422 47753333
No 65
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.33 E-value=8.8e-12 Score=110.21 Aligned_cols=96 Identities=19% Similarity=0.148 Sum_probs=77.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.++.+|||||||+|.++..++.. +.+|+++|+ +.|++.++++ ++.+...|..+. ...++||
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~------------~~~~~~~d~~~~----~~~~~fD 91 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER------------GVDARTGDVRDW----KPKPDTD 91 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc------------CCcEEEcChhhC----CCCCCce
Confidence 46789999999999999988876 678999999 8899888652 133444333221 1346899
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+|+++.++++..+...+++.+.++|+|||.+++..
T Consensus 92 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 92 VVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred EEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence 99999999998889999999999999999988764
No 66
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.33 E-value=1.3e-11 Score=108.16 Aligned_cols=107 Identities=11% Similarity=-0.002 Sum_probs=84.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc----CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL----GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~----g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
.++.+|||+|||+|..++.+++. +.+|+++|+ ++|++.+++++...+.. .++.+...++.+. ..+.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~----~~v~~~~~d~~~~-----~~~~ 122 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE----IPVEILCNDIRHV-----EIKN 122 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC----CCeEEEECChhhC-----CCCC
Confidence 36779999999999998888763 568999999 89999999998765433 3567776555322 2246
Q ss_pred CcEEEEccccCCCC--cHHHHHHHHHHhhCCCcEEEEEEeeeC
Q 023543 196 PDYVLGSDVIYSEG--AVGDLLDTLLQLCGTQTTIFLAGELRN 236 (281)
Q Consensus 196 fD~Iia~d~iy~~~--~~~~ll~~l~~ll~~~g~~~l~~~~r~ 236 (281)
+|+|+++.++++.. ....+++.+.+.|+|||.++++...+.
T Consensus 123 ~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~ 165 (239)
T TIGR00740 123 ASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF 165 (239)
T ss_pred CCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccC
Confidence 89999988887743 467899999999999999999876553
No 67
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.33 E-value=2.3e-11 Score=105.85 Aligned_cols=118 Identities=14% Similarity=0.140 Sum_probs=91.5
Q ss_pred HHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEec
Q 023543 105 VLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTW 183 (281)
Q Consensus 105 ~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w 183 (281)
...+|+..... ..++.+|||||||+|.++..+++.+++|+++|. +.+++.+++|+..++. .+.+...++
T Consensus 35 ~~~~~l~~~~~----~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~------~~~~~~~~~ 104 (233)
T PRK05134 35 LRLNYIREHAG----GLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGL------KIDYRQTTA 104 (233)
T ss_pred HHHHHHHHhcc----CCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCC------ceEEEecCH
Confidence 33456665421 356889999999999999999998999999999 7889999999877653 244555444
Q ss_pred CCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 184 GDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 184 ~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
.+... ....+||+|+++.++.+......+++.+.++|+|+|.++++...
T Consensus 105 ~~~~~--~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 105 EELAA--EHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred HHhhh--hcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 32211 13368999999999999888999999999999999999887643
No 68
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.32 E-value=8.6e-11 Score=101.25 Aligned_cols=151 Identities=14% Similarity=-0.043 Sum_probs=96.9
Q ss_pred hHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCC---------
Q 023543 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGD--------- 171 (281)
Q Consensus 102 ~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~--------- 171 (281)
....|.+|+.... ..++.+|||+|||.|.-++.+|..|.+|+++|+ +.+++.+.. .+++...
T Consensus 19 p~~~l~~~~~~l~-----~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~ 90 (213)
T TIGR03840 19 VNPLLVKHWPALG-----LPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTR 90 (213)
T ss_pred CCHHHHHHHHhhC-----CCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHH---HcCCCcceecccccee
Confidence 3566777776420 136789999999999999999999999999999 778886532 2222100
Q ss_pred -CCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCC--CCcHHHHHHHHHHhhCCCcEEEEEEeeeC------h---hH
Q 023543 172 -LRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYS--EGAVGDLLDTLLQLCGTQTTIFLAGELRN------D---SV 239 (281)
Q Consensus 172 -~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~--~~~~~~ll~~l~~ll~~~g~~~l~~~~r~------~---~~ 239 (281)
...++.+...|..+.... ..++||.|+...++.+ ++..+.+++.+.++|+|||.+++...... + -.
T Consensus 91 ~~~~~v~~~~~D~~~~~~~--~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~~ 168 (213)
T TIGR03840 91 YRAGNIEIFCGDFFALTAA--DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFSVS 168 (213)
T ss_pred eecCceEEEEccCCCCCcc--cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCCC
Confidence 113455556544322111 1357999998776654 45567899999999999997544432211 1 11
Q ss_pred HHHHHHHHhcCCeEEEEecCCCC
Q 023543 240 LEYFLEAAMKDFVIGRVEQTQWH 262 (281)
Q Consensus 240 ~~~fl~~~~~~f~v~~i~~~~~~ 262 (281)
.+...+.+..+|+++.+......
T Consensus 169 ~~eL~~~f~~~~~i~~~~~~~~~ 191 (213)
T TIGR03840 169 PAEVEALYGGHYEIELLESRDVL 191 (213)
T ss_pred HHHHHHHhcCCceEEEEeecccc
Confidence 22233444457888888765544
No 69
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.32 E-value=3.5e-11 Score=110.19 Aligned_cols=126 Identities=16% Similarity=0.130 Sum_probs=91.6
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
++.+|||||||+|.+++.+++. +.+|+++|+ +++++.++++...+ ++.+...+.. +..+.+.+||+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~--------~i~~i~gD~e---~lp~~~~sFDv 181 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK--------ECKIIEGDAE---DLPFPTDYADR 181 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc--------CCeEEeccHH---hCCCCCCceeE
Confidence 5679999999999988887763 468999999 88999999876432 3445554432 22334568999
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeCh--------------hHHHHHHHHHhc-CCeEEEEec
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRND--------------SVLEYFLEAAMK-DFVIGRVEQ 258 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~--------------~~~~~fl~~~~~-~f~v~~i~~ 258 (281)
|+++.++++..+.+.+++.+.++|+|||.+++....... ...+.+.+.+.+ ||....+.+
T Consensus 182 VIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred EEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEE
Confidence 999999988888899999999999999998776532211 012344455554 898666643
No 70
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.31 E-value=4.4e-11 Score=105.76 Aligned_cols=98 Identities=14% Similarity=0.100 Sum_probs=77.7
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.++.+|||||||+|.++..++.. +.+|+++|+ +.+++.++++.. ++.+...|..+. ....+||
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~----------~~~~~~~d~~~~----~~~~~fD 95 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP----------DCQFVEADIASW----QPPQALD 95 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC----------CCeEEECchhcc----CCCCCcc
Confidence 45789999999999999888874 568999999 889999987642 234444332211 1335899
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+|+++.++++..+...+++.+.++|+|||.+++..
T Consensus 96 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 96 LIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred EEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 99999999988889999999999999999988864
No 71
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.31 E-value=4e-11 Score=103.27 Aligned_cols=112 Identities=16% Similarity=0.169 Sum_probs=79.9
Q ss_pred HHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc-C--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEE
Q 023543 103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL-G--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVV 178 (281)
Q Consensus 103 s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~-g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~ 178 (281)
+..+..++...++ ..++.+|||+|||+|..+..+++. + .+|+++|+ +++++.+++|++.++.. ++.+
T Consensus 61 ~p~~~~~~~~~l~----~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-----~v~~ 131 (212)
T PRK13942 61 AIHMVAIMCELLD----LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-----NVEV 131 (212)
T ss_pred cHHHHHHHHHHcC----CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----CeEE
Confidence 4444445544322 357889999999999999888875 3 58999999 88999999999988754 5666
Q ss_pred EEEecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 179 TELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 179 ~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
...|-. .......+||+|++.... ..+.+.+.+.|+|||++++..
T Consensus 132 ~~gd~~---~~~~~~~~fD~I~~~~~~------~~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 132 IVGDGT---LGYEENAPYDRIYVTAAG------PDIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred EECCcc---cCCCcCCCcCEEEECCCc------ccchHHHHHhhCCCcEEEEEE
Confidence 664422 211234689999886554 334456777899999977753
No 72
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.31 E-value=1.7e-10 Score=107.52 Aligned_cols=130 Identities=15% Similarity=0.130 Sum_probs=94.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
..+++|||||||+|.+++.++..+.+|+++|+ +.+++.+++|++.|+.. ++.+...+..+.... ...+||+|
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~-----~~~~~~~d~~~~~~~--~~~~~D~v 304 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLD-----NLSFAALDSAKFATA--QMSAPELV 304 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCC-----cEEEEECCHHHHHHh--cCCCCCEE
Confidence 45679999999999999999998889999999 88999999999999764 677777665322111 12459987
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhcCCeEEEEecCCCCCC
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGRVEQTQWHPD 264 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~v~~i~~~~~~~~ 264 (281)
+. |.-|. ...+.+++.+.. ++|++++|+++. +.++.+=+..+ .||+++.+.--.+-|.
T Consensus 305 i~-DPPr~-G~~~~~l~~l~~-~~p~~ivyvsc~---p~TlaRDl~~L-~gy~l~~~~~~DmFPq 362 (374)
T TIGR02085 305 LV-NPPRR-GIGKELCDYLSQ-MAPKFILYSSCN---AQTMAKDIAEL-SGYQIERVQLFDMFPH 362 (374)
T ss_pred EE-CCCCC-CCcHHHHHHHHh-cCCCeEEEEEeC---HHHHHHHHHHh-cCceEEEEEEeccCCC
Confidence 76 45554 556777777765 688999999875 33333223334 6899998875554443
No 73
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.30 E-value=1.3e-10 Score=104.43 Aligned_cols=113 Identities=17% Similarity=0.195 Sum_probs=83.7
Q ss_pred CeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 124 KKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
.+|||+|||+|.+++.++... .+|+++|+ +++++.+++|+..++.. .++.+...||.+.. ...+||+|+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~----~~v~~~~~d~~~~~----~~~~fDlIv 187 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLE----HRVEFIQSNLFEPL----AGQKIDIIV 187 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEECchhccC----cCCCccEEE
Confidence 699999999999999999854 58999999 88999999999998764 35888887765422 223799998
Q ss_pred Ecccc--------------CCC-----------CcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHH
Q 023543 201 GSDVI--------------YSE-----------GAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFL 244 (281)
Q Consensus 201 a~d~i--------------y~~-----------~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl 244 (281)
++... |.+ ..+..+++.+.++|+|||.+++.........+..++
T Consensus 188 sNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~ 256 (284)
T TIGR00536 188 SNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELL 256 (284)
T ss_pred ECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHH
Confidence 85321 111 136678899999999999987766544444444433
No 74
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.30 E-value=3e-11 Score=104.32 Aligned_cols=100 Identities=20% Similarity=0.226 Sum_probs=78.8
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++++|||+|||+|.++..++..+.+|+++|+ ++++..+++++..++.. .++.+...++.+. . .+||+|
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~----~~i~~~~~d~~~~-----~-~~fD~i 123 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVA----GNVEFEVNDLLSL-----C-GEFDIV 123 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC----CceEEEECChhhC-----C-CCcCEE
Confidence 46889999999999999999998889999999 88999999998877543 3566666554321 1 679999
Q ss_pred EEccccCCC--CcHHHHHHHHHHhhCCCcEEEE
Q 023543 200 LGSDVIYSE--GAVGDLLDTLLQLCGTQTTIFL 230 (281)
Q Consensus 200 ia~d~iy~~--~~~~~ll~~l~~ll~~~g~~~l 230 (281)
++++++++. .....+++.+.+++++++.+.+
T Consensus 124 i~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 124 VCMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred EEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 999998663 4567788888888876655443
No 75
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.29 E-value=2.3e-10 Score=106.26 Aligned_cols=166 Identities=14% Similarity=0.066 Sum_probs=112.1
Q ss_pred CCceEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hh
Q 023543 76 CGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PD 154 (281)
Q Consensus 76 ~g~~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~ 154 (281)
+|..+.++.++++|+.... ..+..|.+++...+. ..+.+||||+||+|.+++.+++...+|+++|. +.
T Consensus 171 ~~~~~~~~~~~~sF~Q~N~------~~~e~l~~~v~~~~~-----~~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ 239 (362)
T PRK05031 171 AGREFIYRQVENSFTQPNA------AVNEKMLEWALDATK-----GSKGDLLELYCGNGNFTLALARNFRRVLATEISKP 239 (362)
T ss_pred CCcEEEEEeCCCCeeccCH------HHHHHHHHHHHHHhh-----cCCCeEEEEeccccHHHHHHHhhCCEEEEEECCHH
Confidence 4545677888877665443 345666666655421 12357999999999999999988778999999 88
Q ss_pred HHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCc-------------CCCCCcEEEEccccCCCCcHHHHHHHHHHh
Q 023543 155 RLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDL-------------IQPLPDYVLGSDVIYSEGAVGDLLDTLLQL 221 (281)
Q Consensus 155 ~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~-------------~~~~fD~Iia~d~iy~~~~~~~ll~~l~~l 221 (281)
+++.+++|+..|++. ++.+...|..+...... ...+||+|+. |.-+ ....+.+++.+.+
T Consensus 240 ai~~a~~N~~~~~~~-----~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~l-DPPR-~G~~~~~l~~l~~- 311 (362)
T PRK05031 240 SVAAAQYNIAANGID-----NVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFV-DPPR-AGLDDETLKLVQA- 311 (362)
T ss_pred HHHHHHHHHHHhCCC-----cEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEE-CCCC-CCCcHHHHHHHHc-
Confidence 999999999999875 67777766533211100 0225898776 5555 4556777777755
Q ss_pred hCCCcEEEEEEeeeChhHHHHHHHHHhcCCeEEEEecCCCCCCC
Q 023543 222 CGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGRVEQTQWHPDY 265 (281)
Q Consensus 222 l~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~v~~i~~~~~~~~~ 265 (281)
+++++|+++.. .++.+=+..+.++|+++.+.--.+-|.-
T Consensus 312 --~~~ivyvSC~p---~tlarDl~~L~~gY~l~~v~~~DmFPqT 350 (362)
T PRK05031 312 --YERILYISCNP---ETLCENLETLSQTHKVERFALFDQFPYT 350 (362)
T ss_pred --cCCEEEEEeCH---HHHHHHHHHHcCCcEEEEEEEcccCCCC
Confidence 78899998865 2222223333358999998755554443
No 76
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.28 E-value=6e-11 Score=111.12 Aligned_cols=136 Identities=15% Similarity=0.061 Sum_probs=89.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC-CcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ-DLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~-~~~~~~fD 197 (281)
.++++|||+|||||.+++.++..|+ +|+++|+ +.+++.+++|+..|++.. .++.+...|..+.... ...+.+||
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~---~~v~~i~~D~~~~l~~~~~~~~~fD 295 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDL---SKAEFVRDDVFKLLRTYRDRGEKFD 295 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCC---CcEEEEEccHHHHHHHHHhcCCCCC
Confidence 4689999999999999998887776 7999999 889999999999998741 2567776554322111 01245799
Q ss_pred EEEEccccCCCC---------cHHHHHHHHHHhhCCCcEEEEEEee--eChhHHHHHHHHHh--cCCeEEEEecC
Q 023543 198 YVLGSDVIYSEG---------AVGDLLDTLLQLCGTQTTIFLAGEL--RNDSVLEYFLEAAM--KDFVIGRVEQT 259 (281)
Q Consensus 198 ~Iia~d~iy~~~---------~~~~ll~~l~~ll~~~g~~~l~~~~--r~~~~~~~fl~~~~--~~f~v~~i~~~ 259 (281)
+|++....+... .+..++....++|+|||.++++... -..+.+..++.... .+-++..+...
T Consensus 296 lVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l~~~ 370 (396)
T PRK15128 296 VIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQF 370 (396)
T ss_pred EEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEEEc
Confidence 998544433221 3566777788999999988765432 22233333333222 24555555443
No 77
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.28 E-value=2.6e-10 Score=96.84 Aligned_cols=131 Identities=15% Similarity=0.187 Sum_probs=88.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.++.+|||+|||+|.+++.+++. +.+|+++|. +++++.+++|++.++.. ++.+...+..+..+. ..+.+|
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~-----~v~~~~~d~~~~~~~--~~~~~d 111 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK-----NVEVIEGSAPECLAQ--LAPAPD 111 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-----CeEEEECchHHHHhh--CCCCCC
Confidence 46789999999999999988864 468999999 88999999999988754 566665443221111 113356
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeCh-hHHHHHHHHHh-cCCeEEEEecCCCC
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRND-SVLEYFLEAAM-KDFVIGRVEQTQWH 262 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~-~~~~~fl~~~~-~~f~v~~i~~~~~~ 262 (281)
.+... ....++.+++.+.++|+|||.+++....... ......++.+. .++++.++.-..+.
T Consensus 112 ~v~~~----~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (196)
T PRK07402 112 RVCIE----GGRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNIEVVQAAVNRLE 174 (196)
T ss_pred EEEEE----CCcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCceEEEEEhhhcc
Confidence 55432 1345688999999999999998877654322 11233344443 47777777554443
No 78
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.27 E-value=5.6e-11 Score=101.25 Aligned_cols=107 Identities=17% Similarity=0.151 Sum_probs=82.0
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc-CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL-GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~-g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
..+.+|||||||+|.+|+.++.. ..+|+++|. +++++.+++|++.|+.. ++.+..-|+.+.... ...+||+
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-----~v~~~~~D~~~~l~~--~~~~fDl 124 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-----NARVVNTNALSFLAQ--PGTPHNV 124 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-----cEEEEEchHHHHHhh--cCCCceE
Confidence 46789999999999999965444 458999999 88999999999999764 577777665432211 2346998
Q ss_pred EEEccccCCCCcHHHHHHHHHHh--hCCCcEEEEEEeee
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQL--CGTQTTIFLAGELR 235 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~l--l~~~g~~~l~~~~r 235 (281)
|++ |+.|.....+.+++.+... +++++++|+.+..+
T Consensus 125 V~~-DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 125 VFV-DPPFRKGLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred EEE-CCCCCCChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 875 4558888888888988874 78999999887654
No 79
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.27 E-value=2.6e-10 Score=97.65 Aligned_cols=96 Identities=16% Similarity=0.124 Sum_probs=69.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.++.+|||+|||+|..+..++.. +.+|+++|+ +++++.+++|.. .+.+...+..+ .+.+.+||
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~----------~~~~~~~d~~~----~~~~~sfD 107 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP----------NINIIQGSLFD----PFKDNFFD 107 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC----------CCcEEEeeccC----CCCCCCEE
Confidence 46779999999999999888875 578999999 889999987642 23334434322 23467899
Q ss_pred EEEEccccCCC--CcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 198 YVLGSDVIYSE--GAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 198 ~Iia~d~iy~~--~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+|++..++++. ..+..+++.+.+.+ ++.++++.
T Consensus 108 ~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 108 LVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred EEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 99999999774 34666777777765 34555543
No 80
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.27 E-value=2.5e-10 Score=110.24 Aligned_cols=125 Identities=18% Similarity=0.224 Sum_probs=87.0
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
++.+|||+|||+|.+++.+++. +++|+++|+ +.+++.+++|+..+++. .++.+...+|.+. +...+||+
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~----~~v~~~~~D~~~~----~~~~~fDl 209 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVT----DRIQIIHSNWFEN----IEKQKFDF 209 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCc----cceeeeecchhhh----CcCCCccE
Confidence 3468999999999999988763 568999999 88999999999988765 4677777665432 22357999
Q ss_pred EEEccccCC---------------C-----------CcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhcCCe
Q 023543 199 VLGSDVIYS---------------E-----------GAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFV 252 (281)
Q Consensus 199 Iia~d~iy~---------------~-----------~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~ 252 (281)
|+++-.... + ..+..+++.+.++|+|+|.+++.........+...+.. .+|.
T Consensus 210 IvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~--~g~~ 287 (506)
T PRK01544 210 IVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLD--HGYN 287 (506)
T ss_pred EEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHHh--cCCC
Confidence 998543221 1 12456788888999999998876544433333333322 4776
Q ss_pred EEEE
Q 023543 253 IGRV 256 (281)
Q Consensus 253 v~~i 256 (281)
...+
T Consensus 288 ~~~~ 291 (506)
T PRK01544 288 IESV 291 (506)
T ss_pred ceEE
Confidence 4444
No 81
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.27 E-value=4.9e-10 Score=99.83 Aligned_cols=138 Identities=15% Similarity=0.185 Sum_probs=93.0
Q ss_pred cchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCce
Q 023543 100 WDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSA 176 (281)
Q Consensus 100 W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i 176 (281)
.+.+..+.+++.... ...++.+|||+|||+|.+++.++... .+|+++|+ +.+++.+++|+. +... .++
T Consensus 90 r~~te~l~~~~~~~~----~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~----~~i 160 (275)
T PRK09328 90 RPETEELVEWALEAL----LLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLG----ARV 160 (275)
T ss_pred CCCcHHHHHHHHHhc----cccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCC----CcE
Confidence 344566777665321 12456799999999999999998864 68999999 889999999998 3222 367
Q ss_pred EEEEEecCCCCCCCcCCCCCcEEEEccccCCC--------------------------CcHHHHHHHHHHhhCCCcEEEE
Q 023543 177 VVTELTWGDDPDQDLIQPLPDYVLGSDVIYSE--------------------------GAVGDLLDTLLQLCGTQTTIFL 230 (281)
Q Consensus 177 ~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~--------------------------~~~~~ll~~l~~ll~~~g~~~l 230 (281)
.+...++.+.. .+.+||+|+++...... ..+..+++.+.++|+|||.+++
T Consensus 161 ~~~~~d~~~~~----~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~ 236 (275)
T PRK09328 161 EFLQGDWFEPL----PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL 236 (275)
T ss_pred EEEEccccCcC----CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 77777764322 24689999985432211 1246788888899999999888
Q ss_pred EEeeeChhHHHHHHHHHhcCCe
Q 023543 231 AGELRNDSVLEYFLEAAMKDFV 252 (281)
Q Consensus 231 ~~~~r~~~~~~~fl~~~~~~f~ 252 (281)
.........+..++. ..+|.
T Consensus 237 e~g~~~~~~~~~~l~--~~gf~ 256 (275)
T PRK09328 237 EIGYDQGEAVRALLA--AAGFA 256 (275)
T ss_pred EECchHHHHHHHHHH--hCCCc
Confidence 654333333333332 24775
No 82
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.27 E-value=4e-11 Score=101.47 Aligned_cols=110 Identities=21% Similarity=0.179 Sum_probs=82.5
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
..+++||||+||+|.+|+.++.+|+ +|+++|. +.+++.+++|++.|+.. .++.+...|..+.........+++.
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~----~~~~~~~~D~~~~l~~~~~~~~~~d 123 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSG----EQAEVVRNSALRALKFLAKKPTFDN 123 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCc----ccEEEEehhHHHHHHHhhccCCCce
Confidence 5789999999999999999999988 6999999 88999999999999865 3566666543221111111234556
Q ss_pred EEEccccCCCCcHHHHHHHHHH--hhCCCcEEEEEEee
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQ--LCGTQTTIFLAGEL 234 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~--ll~~~g~~~l~~~~ 234 (281)
||..|+.|.....+.++..+.+ +++++|.+++-...
T Consensus 124 vv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 124 VIYLDPPFFNGALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred EEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 7778899988888888887766 57888877665543
No 83
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.26 E-value=1.5e-10 Score=99.52 Aligned_cols=99 Identities=15% Similarity=0.099 Sum_probs=76.2
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||+|||+|..+..+++.+.+|+++|+ +++++.+++|+..++.. ++.+...+..+.. ....+||+|
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~~~---~~~~~fD~I 148 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLH-----NVSVRHGDGWKGW---PAYAPFDRI 148 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCC-----ceEEEECCcccCC---CcCCCcCEE
Confidence 46789999999999999888887779999999 88999999999988664 4666664432211 123689999
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
++.... ..+.+.+.+.|+|||.+++...
T Consensus 149 ~~~~~~------~~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 149 LVTAAA------PEIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EEccCc------hhhhHHHHHhcCCCcEEEEEEc
Confidence 986554 3445677889999999887654
No 84
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=3.5e-10 Score=93.87 Aligned_cols=58 Identities=36% Similarity=0.590 Sum_probs=50.9
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEec
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTW 183 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w 183 (281)
.++|++|+|||||||.+|+.++.+|++ |+++|+ +++++.+++|+.++. +++.+..-|.
T Consensus 43 ~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~------g~v~f~~~dv 102 (198)
T COG2263 43 DLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL------GDVEFVVADV 102 (198)
T ss_pred CcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC------CceEEEEcch
Confidence 578999999999999999999999985 999999 999999999999843 4577777554
No 85
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.25 E-value=2.3e-11 Score=101.95 Aligned_cols=99 Identities=14% Similarity=0.167 Sum_probs=76.7
Q ss_pred CeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEc
Q 023543 124 KKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGS 202 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~ 202 (281)
.++||+|||.|.+...+|..+.+++++|+ +.+++.+++.+... .++.+...+.- ...+..+||+|+.+
T Consensus 45 ~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~-------~~V~~~~~dvp----~~~P~~~FDLIV~S 113 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGL-------PHVEWIQADVP----EFWPEGRFDLIVLS 113 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT--------SSEEEEES-TT----T---SS-EEEEEEE
T ss_pred ceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCC-------CCeEEEECcCC----CCCCCCCeeEEEEe
Confidence 58999999999999999999889999999 88999999877542 36888886542 23466899999999
Q ss_pred cccCCCC---cHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 203 DVIYSEG---AVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 203 d~iy~~~---~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
.++|+.. .+..++..+...|+|||.++++..
T Consensus 114 EVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 114 EVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp S-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 9999965 466788888899999999988765
No 86
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.25 E-value=3.8e-10 Score=102.94 Aligned_cols=130 Identities=18% Similarity=0.167 Sum_probs=92.0
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||+|||+|.+++.+|..+.+|+++|+ +.+++.+++|++.|++. ++.+...|..+.... ...+||+|
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~-----~v~~~~~D~~~~~~~--~~~~~D~V 244 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLT-----NVQFQALDSTQFATA--QGEVPDLV 244 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCC-----ceEEEEcCHHHHHHh--cCCCCeEE
Confidence 35789999999999999999999999999999 89999999999999864 677777665332111 23469998
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhcCCeEEEEecCCCCCC
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGRVEQTQWHPD 264 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~v~~i~~~~~~~~ 264 (281)
+.... + ......+++.+.+ ++|++++|+++...... +=+..+ .+|+++.+.--.+-|.
T Consensus 245 v~dPP-r-~G~~~~~~~~l~~-~~~~~ivyvsc~p~t~~---rd~~~l-~~y~~~~~~~~DmFP~ 302 (315)
T PRK03522 245 LVNPP-R-RGIGKELCDYLSQ-MAPRFILYSSCNAQTMA---KDLAHL-PGYRIERVQLFDMFPH 302 (315)
T ss_pred EECCC-C-CCccHHHHHHHHH-cCCCeEEEEECCcccch---hHHhhc-cCcEEEEEEEeccCCC
Confidence 87544 2 2334566666655 57888888887654321 112223 6899988865544443
No 87
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.24 E-value=1.9e-10 Score=104.63 Aligned_cols=104 Identities=17% Similarity=0.169 Sum_probs=74.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||+|||+|.+++.+++.|.+|+++|+ +.|++.+++|+...........++.+...|+.+ .+.+||+|
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~------l~~~fD~V 216 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES------LSGKYDTV 216 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh------cCCCcCEE
Confidence 46789999999999999999999999999999 889999999987653210001245565555421 24689999
Q ss_pred EEccccCCCCc--HHHHHHHHHHhhCCCcEEEEEE
Q 023543 200 LGSDVIYSEGA--VGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 200 ia~d~iy~~~~--~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
++.+++++... ...+++.+.++ .+++ ++++.
T Consensus 217 v~~~vL~H~p~~~~~~ll~~l~~l-~~g~-liIs~ 249 (315)
T PLN02585 217 TCLDVLIHYPQDKADGMIAHLASL-AEKR-LIISF 249 (315)
T ss_pred EEcCEEEecCHHHHHHHHHHHHhh-cCCE-EEEEe
Confidence 99999876432 45567777654 4444 45554
No 88
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.24 E-value=1.1e-10 Score=105.98 Aligned_cols=102 Identities=19% Similarity=0.197 Sum_probs=78.4
Q ss_pred CeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 124 KKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
++|||+|||+|.+++.+++. +.+|+++|+ +.+++.+++|++.++.. .++.+...|+.+. +...+||+|+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~----~~i~~~~~D~~~~----l~~~~fDlIv 206 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLE----DRVTLIESDLFAA----LPGRRYDLIV 206 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----CcEEEEECchhhh----CCCCCccEEE
Confidence 68999999999999999875 468999999 88999999999998765 4677777665332 2234799999
Q ss_pred Ecccc--------------CCC-----------CcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 201 GSDVI--------------YSE-----------GAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 201 a~d~i--------------y~~-----------~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
++.+. |.+ ..+..+++.+.++|+|||.+++...
T Consensus 207 sNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 207 SNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred ECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 86332 111 1246788999999999999887543
No 89
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.24 E-value=2.2e-10 Score=107.02 Aligned_cols=99 Identities=13% Similarity=0.198 Sum_probs=78.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.++.+|||+|||+|.+++.+++ .|.+|+++|+ +++++.+++++.. . .+.+...++.+ + ..+||.
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~--l------~v~~~~~D~~~-----l-~~~fD~ 231 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG--L------PVEIRLQDYRD-----L-NGQFDR 231 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc--C------eEEEEECchhh-----c-CCCCCE
Confidence 4678999999999999998887 5789999999 8899999988742 1 24555544432 1 367999
Q ss_pred EEEccccCCC--CcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 199 VLGSDVIYSE--GAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 199 Iia~d~iy~~--~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
|++..++++. ...+.+++.+.++|+|||.+++...
T Consensus 232 Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 232 IVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred EEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 9999888774 4568899999999999999888653
No 90
>PRK08317 hypothetical protein; Provisional
Probab=99.24 E-value=2.2e-10 Score=99.13 Aligned_cols=103 Identities=14% Similarity=0.054 Sum_probs=81.5
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++.+|||+|||+|..+..++.. +.+|+++|+ +.+++.++++..... .++.+...+... ..+.+.+|
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~------~~~~~~~~d~~~---~~~~~~~~ 88 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLG------PNVEFVRGDADG---LPFPDGSF 88 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCC------CceEEEeccccc---CCCCCCCc
Confidence 46789999999999999888864 358999999 788999988833221 356666655432 22345789
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
|+|++..++.+..+...+++.+.++|+|||.+++..
T Consensus 89 D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 89 DAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred eEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence 999999999988889999999999999999988765
No 91
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.24 E-value=1.4e-10 Score=98.54 Aligned_cols=126 Identities=10% Similarity=-0.057 Sum_probs=87.7
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.+.+|||||||+|..++.+|+. ..+|+++|+ +++++.+++|+..+++. ++.+...+..+.....+.+..+|.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-----ni~~i~~d~~~~~~~~~~~~~~d~ 90 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-----NLHVLCGDANELLDKFFPDGSLSK 90 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-----CEEEEccCHHHHHHhhCCCCceeE
Confidence 4569999999999999988875 457999999 88999999999887664 677777665332211223357898
Q ss_pred EEEccccCCCC--------cHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhc--CCeEE
Q 023543 199 VLGSDVIYSEG--------AVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMK--DFVIG 254 (281)
Q Consensus 199 Iia~d~iy~~~--------~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~--~f~v~ 254 (281)
|+..-..-++. ..+.+++.+.++|+|||.+++..... ...+.+++.+.. +|...
T Consensus 91 v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~--~~~~~~~~~~~~~~~f~~~ 154 (194)
T TIGR00091 91 VFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE--PLFEDMLKVLSENDLFENT 154 (194)
T ss_pred EEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH--HHHHHHHHHHHhCCCeEec
Confidence 88753322211 12679999999999999998876433 233445555554 35543
No 92
>PRK04266 fibrillarin; Provisional
Probab=99.24 E-value=4e-10 Score=97.94 Aligned_cols=130 Identities=15% Similarity=0.119 Sum_probs=82.1
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
..+|.+|||+|||+|..++.++... .+|+++|+ ++|++.+.+++... .++.+...|-.+.........+|
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-------~nv~~i~~D~~~~~~~~~l~~~~ 142 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-------KNIIPILADARKPERYAHVVEKV 142 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-------CCcEEEECCCCCcchhhhccccC
Confidence 3568899999999999999998853 47999999 88998887777643 23444443322110000112459
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeee------Ch-hHHHHHHHHHh-cCCeEEEEec
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELR------ND-SVLEYFLEAAM-KDFVIGRVEQ 258 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r------~~-~~~~~fl~~~~-~~f~v~~i~~ 258 (281)
|+|++. .- .+.....+++.+.++|||||.++++.+.+ .+ ...+...+.+. .||++....+
T Consensus 143 D~i~~d-~~-~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~ 210 (226)
T PRK04266 143 DVIYQD-VA-QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVD 210 (226)
T ss_pred CEEEEC-CC-ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEc
Confidence 988842 21 12233456899999999999999843222 11 11222334444 3898777654
No 93
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.24 E-value=8.1e-10 Score=102.22 Aligned_cols=165 Identities=13% Similarity=0.097 Sum_probs=109.9
Q ss_pred CCceEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hh
Q 023543 76 CGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PD 154 (281)
Q Consensus 76 ~g~~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~ 154 (281)
.|..+++.+++++|+.... .....|.+++.+.+. ..+++|||||||+|.+++.+++...+|+++|+ ++
T Consensus 162 ~~~~~~~~~~~~~F~Q~N~------~~~~~l~~~v~~~~~-----~~~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~ 230 (353)
T TIGR02143 162 AGREFIYRQVENSFTQPNA------AVNIKMLEWACEVTQ-----GSKGDLLELYCGNGNFSLALAQNFRRVLATEIAKP 230 (353)
T ss_pred CCeEEEEEECCCCcccCCH------HHHHHHHHHHHHHhh-----cCCCcEEEEeccccHHHHHHHHhCCEEEEEECCHH
Confidence 4555788888887765543 234455555554321 22347999999999999999988779999999 89
Q ss_pred HHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC-----c---C-----CCCCcEEEEccccCCCCcHHHHHHHHHHh
Q 023543 155 RLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD-----L---I-----QPLPDYVLGSDVIYSEGAVGDLLDTLLQL 221 (281)
Q Consensus 155 ~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~-----~---~-----~~~fD~Iia~d~iy~~~~~~~ll~~l~~l 221 (281)
+++.+++|+..|++. ++.+...+..+..... + . ..+||+|+. |.- .....+.+++.+.+
T Consensus 231 av~~a~~n~~~~~~~-----~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~l-DPP-R~G~~~~~l~~l~~- 302 (353)
T TIGR02143 231 SVNAAQYNIAANNID-----NVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFV-DPP-RAGLDPDTCKLVQA- 302 (353)
T ss_pred HHHHHHHHHHHcCCC-----cEEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEE-CCC-CCCCcHHHHHHHHc-
Confidence 999999999999875 5777776654321110 0 0 123798776 554 34556777777654
Q ss_pred hCCCcEEEEEEeeeChhHHHHHHHHHhcCCeEEEEecCCCCCC
Q 023543 222 CGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGRVEQTQWHPD 264 (281)
Q Consensus 222 l~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~v~~i~~~~~~~~ 264 (281)
+++++|+++... ++.+=+..+.++|+++.+.--.+-|.
T Consensus 303 --~~~ivYvsC~p~---tlaRDl~~L~~~Y~l~~v~~~DmFP~ 340 (353)
T TIGR02143 303 --YERILYISCNPE---TLKANLEQLSETHRVERFALFDQFPY 340 (353)
T ss_pred --CCcEEEEEcCHH---HHHHHHHHHhcCcEEEEEEEcccCCC
Confidence 789999987643 32222333445699888875554444
No 94
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.23 E-value=1.8e-10 Score=104.57 Aligned_cols=105 Identities=14% Similarity=0.169 Sum_probs=84.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcC--CEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLG--AQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.++.+|||+|||+|..++.+++.. .+++++|.+.+++.+++|+...+.. +++.+...|..+ ..+ +++|+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~----~rv~~~~~d~~~---~~~--~~~D~ 218 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVA----DRMRGIAVDIYK---ESY--PEADA 218 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCcc----ceEEEEecCccC---CCC--CCCCE
Confidence 356799999999999999988854 5799999999999999999998765 567777755432 222 45799
Q ss_pred EEEccccCCCC--cHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 199 VLGSDVIYSEG--AVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 199 Iia~d~iy~~~--~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
|+.+.++|+.. ....+++.+.+.|+|||++++....
T Consensus 219 v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~ 256 (306)
T TIGR02716 219 VLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMV 256 (306)
T ss_pred EEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 99999988653 3568999999999999999988653
No 95
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.22 E-value=1.4e-11 Score=93.37 Aligned_cols=92 Identities=25% Similarity=0.288 Sum_probs=70.2
Q ss_pred EEEECCCcCHHHHHHHHc---C--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 126 IVELGSGCGLVGCIAALL---G--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 126 VLELGcGtG~~~i~~a~~---g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
|||||||+|.....++.. + .+++++|+ +++++.++++....+. ++++...|..+ ....+++||+|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~------~~~~~~~D~~~---l~~~~~~~D~v 71 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP------KVRFVQADARD---LPFSDGKFDLV 71 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT------TSEEEESCTTC---HHHHSSSEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC------ceEEEECCHhH---CcccCCCeeEE
Confidence 799999999999888875 3 68999999 8899999999887543 46677766543 22346799999
Q ss_pred EEccc-cCC--CCcHHHHHHHHHHhhCCCc
Q 023543 200 LGSDV-IYS--EGAVGDLLDTLLQLCGTQT 226 (281)
Q Consensus 200 ia~d~-iy~--~~~~~~ll~~l~~ll~~~g 226 (281)
+++.. +++ ++....+++.+.++++|||
T Consensus 72 ~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 72 VCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp EE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred EEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 99544 444 4578999999999999987
No 96
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.21 E-value=1.2e-10 Score=101.05 Aligned_cols=101 Identities=11% Similarity=0.071 Sum_probs=79.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC--EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA--QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~--~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
..+++|||||||+|..+..++..+. +|+++|+ +.+++.++.+... ++.+...+..+ ..+.+++||
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~---------~~~~~~~d~~~---~~~~~~~fD 100 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE---------NVQFICGDAEK---LPLEDSSFD 100 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC---------CCeEEecchhh---CCCCCCcee
Confidence 4567999999999999998888664 5899999 7788887765431 34455544432 223457899
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
+|+++.++++..+...+++.+.++|+|||.++++..
T Consensus 101 ~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 101 LIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred EEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeC
Confidence 999999999988899999999999999999988754
No 97
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.21 E-value=4.1e-10 Score=106.95 Aligned_cols=144 Identities=17% Similarity=0.155 Sum_probs=98.0
Q ss_pred hHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEE
Q 023543 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTE 180 (281)
Q Consensus 102 ~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~ 180 (281)
.+..+.+.+...+. ..++.+|||+|||+|.+++.+|+.+.+|+++|+ +++++.+++|+..|+.. ++.+..
T Consensus 276 ~~~~l~~~~~~~l~----~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~-----nv~~~~ 346 (431)
T TIGR00479 276 QNEKLVDRALEALE----LQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIA-----NVEFLA 346 (431)
T ss_pred HHHHHHHHHHHHhc----cCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCC-----ceEEEe
Confidence 34444555544321 235679999999999999999998889999999 88999999999999865 678877
Q ss_pred EecCCCCCC-CcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEEec
Q 023543 181 LTWGDDPDQ-DLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRVEQ 258 (281)
Q Consensus 181 l~w~~~~~~-~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i~~ 258 (281)
.|+.+.... ...+.+||+|+.. .-+. .....+++.+.+ +++++.+|+++. +.++..-+..+. .||+++.+.-
T Consensus 347 ~d~~~~l~~~~~~~~~~D~vi~d-PPr~-G~~~~~l~~l~~-l~~~~ivyvsc~---p~tlard~~~l~~~gy~~~~~~~ 420 (431)
T TIGR00479 347 GTLETVLPKQPWAGQIPDVLLLD-PPRK-GCAAEVLRTIIE-LKPERIVYVSCN---PATLARDLEFLCKEGYGITWVQP 420 (431)
T ss_pred CCHHHHHHHHHhcCCCCCEEEEC-cCCC-CCCHHHHHHHHh-cCCCEEEEEcCC---HHHHHHHHHHHHHCCeeEEEEEE
Confidence 665432111 1223569988853 3332 334677777665 688888888865 444433344444 5798888764
Q ss_pred CC
Q 023543 259 TQ 260 (281)
Q Consensus 259 ~~ 260 (281)
-.
T Consensus 421 ~D 422 (431)
T TIGR00479 421 VD 422 (431)
T ss_pred ec
Confidence 33
No 98
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.21 E-value=3.7e-10 Score=103.59 Aligned_cols=107 Identities=19% Similarity=0.116 Sum_probs=81.8
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||+|||+|.+.+.++..+++|+++|+ +.|++.++.|++.++.. ++.+...|.. ...+...+||+|
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~-----~i~~~~~D~~---~l~~~~~~~D~I 252 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIE-----DFFVKRGDAT---KLPLSSESVDAI 252 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCC-----CCeEEecchh---cCCcccCCCCEE
Confidence 46789999999999999999899999999999 88999999999998775 3445444432 222334689988
Q ss_pred EEccccCCC----------CcHHHHHHHHHHhhCCCcEEEEEEeeeC
Q 023543 200 LGSDVIYSE----------GAVGDLLDTLLQLCGTQTTIFLAGELRN 236 (281)
Q Consensus 200 ia~d~iy~~----------~~~~~ll~~l~~ll~~~g~~~l~~~~r~ 236 (281)
++..+ |.. ..+..+++.+.+.|+|||.+++..+...
T Consensus 253 v~dPP-yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~ 298 (329)
T TIGR01177 253 ATDPP-YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI 298 (329)
T ss_pred EECCC-CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC
Confidence 87533 321 2368899999999999999887766543
No 99
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.19 E-value=2.6e-10 Score=101.46 Aligned_cols=105 Identities=22% Similarity=0.190 Sum_probs=75.6
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.++|++|||||||.|..+.-++..|++ |+|+|. ..-. ++-.+-+.-+.. ...+....+..++... ...||
T Consensus 113 ~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~--~QF~~i~~~lg~--~~~~~~lplgvE~Lp~----~~~FD 184 (315)
T PF08003_consen 113 DLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFY--LQFEAIKHFLGQ--DPPVFELPLGVEDLPN----LGAFD 184 (315)
T ss_pred CcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHH--HHHHHHHHHhCC--CccEEEcCcchhhccc----cCCcC
Confidence 479999999999999999999999986 999998 4332 222222222210 0123333333322211 46899
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+|++..|+||..+.-..++.++..|++||.+++-.
T Consensus 185 tVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 185 TVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred EEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEE
Confidence 99999999999999999999999999999887543
No 100
>PRK05785 hypothetical protein; Provisional
Probab=99.18 E-value=2.2e-10 Score=99.69 Aligned_cols=88 Identities=13% Similarity=0.130 Sum_probs=70.8
Q ss_pred CCCeEEEECCCcCHHHHHHHHc-CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL-GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~-g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
++.+|||||||||.++..+++. +.+|+++|+ ++|++.++++. . ....+. ....+.+.+||+|
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~-----~--------~~~~d~---~~lp~~d~sfD~v 114 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD-----D--------KVVGSF---EALPFRDKSFDVV 114 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc-----c--------eEEech---hhCCCCCCCEEEE
Confidence 4679999999999999988887 679999999 88999887531 0 122222 2233556889999
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCC
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQ 225 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~ 225 (281)
+++.++++..+.+.+++.+.+.|+|.
T Consensus 115 ~~~~~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 115 MSSFALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred EecChhhccCCHHHHHHHHHHHhcCc
Confidence 99999999999999999999999994
No 101
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.18 E-value=1.9e-09 Score=89.73 Aligned_cols=123 Identities=20% Similarity=0.207 Sum_probs=89.7
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCC-C
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQP-L 195 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~-~ 195 (281)
+.+|.+++|+|||||.+++.++..+ .+|+++|. ++++++.++|+++.+.+ ++.+..-+ . +..+.+. .
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~-----n~~vv~g~---A-p~~L~~~~~ 102 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVD-----NLEVVEGD---A-PEALPDLPS 102 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCC-----cEEEEecc---c-hHhhcCCCC
Confidence 3578899999999999999999654 47999999 89999999999999865 77777733 2 2223333 5
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCC-eEEEEe
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDF-VIGRVE 257 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f-~v~~i~ 257 (281)
||.|.-... ..++.+++++...|+|||++++-...-. .....++.+. .+| ++.++.
T Consensus 103 ~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~naitlE--~~~~a~~~~~~~g~~ei~~v~ 160 (187)
T COG2242 103 PDAIFIGGG----GNIEEILEAAWERLKPGGRLVANAITLE--TLAKALEALEQLGGREIVQVQ 160 (187)
T ss_pred CCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeecHH--HHHHHHHHHHHcCCceEEEEE
Confidence 888776544 4579999999999999999876554322 2223344444 366 666653
No 102
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.18 E-value=2.3e-09 Score=101.89 Aligned_cols=166 Identities=19% Similarity=0.178 Sum_probs=105.8
Q ss_pred cchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCc
Q 023543 100 WDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGS 175 (281)
Q Consensus 100 W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~ 175 (281)
-.++..++..+. ..+|.+|||+|||+|..++.++.. ..+|+++|+ +.+++.+++|++.++.. +
T Consensus 238 d~~s~l~~~~l~--------~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-----~ 304 (434)
T PRK14901 238 DRSAQLVAPLLD--------PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-----S 304 (434)
T ss_pred CHHHHHHHHHhC--------CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-----e
Confidence 344555555542 246889999999999999888864 247999999 88999999999999875 5
Q ss_pred eEEEEEecCCCCCC-CcCCCCCcEEEEc------cccCC-CC---------------cHHHHHHHHHHhhCCCcEEEEEE
Q 023543 176 AVVTELTWGDDPDQ-DLIQPLPDYVLGS------DVIYS-EG---------------AVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 176 i~~~~l~w~~~~~~-~~~~~~fD~Iia~------d~iy~-~~---------------~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+.+...|..+.... .....+||.|+.- .++.. ++ ....++..+.++|+|||+++.+.
T Consensus 305 v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst 384 (434)
T PRK14901 305 IKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT 384 (434)
T ss_pred EEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 66666553322110 0124579999962 22222 11 14678899999999999876553
Q ss_pred -ee---eChhHHHHHHHHHhcCCeEEEEecCCCCCCCCCCcEEEEEEEecC
Q 023543 233 -EL---RNDSVLEYFLEAAMKDFVIGRVEQTQWHPDYCSPRVVVYILVKKL 279 (281)
Q Consensus 233 -~~---r~~~~~~~fl~~~~~~f~v~~i~~~~~~~~~~~~~~~i~~~~~k~ 279 (281)
.. .+...+..|++. ..+|.+.......+.......+|.+-.++|++
T Consensus 385 csi~~~Ene~~v~~~l~~-~~~~~~~~~~~~~~P~~~~~dGfF~a~l~k~~ 434 (434)
T PRK14901 385 CTLHPAENEAQIEQFLAR-HPDWKLEPPKQKIWPHRQDGDGFFMAVLRKKS 434 (434)
T ss_pred CCCChhhHHHHHHHHHHh-CCCcEecCCCCccCCCCCCCCcEEEEEEEeCC
Confidence 33 233455556543 23676543211023333345788888887753
No 103
>PTZ00146 fibrillarin; Provisional
Probab=99.16 E-value=3.8e-09 Score=94.37 Aligned_cols=129 Identities=11% Similarity=0.110 Sum_probs=81.2
Q ss_pred Cceecch--HHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc-C--CEEEEEec-hhHHHHHHHHHHHhhcC
Q 023543 96 GSVMWDS--GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL-G--AQVILTDL-PDRLRLLKKNIENNLRH 169 (281)
Q Consensus 96 G~~~W~~--s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~-g--~~V~~tD~-~~~l~~~~~N~~~n~~~ 169 (281)
-.++|+- |.+.|..+... +. ....++.+|||||||+|..+..++.. + ..|+++|+ +.+++.+...+...
T Consensus 106 eyR~w~p~rSKlaa~i~~g~-~~-l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--- 180 (293)
T PTZ00146 106 EYRVWNPFRSKLAAAIIGGV-AN-IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--- 180 (293)
T ss_pred eeeeeCCcccHHHHHHHCCc-ce-eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---
Confidence 4889986 55555554432 11 12457889999999999999998875 3 47999999 66654443332221
Q ss_pred CCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 170 GDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 170 ~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
.++.+..-|...........+.||+|++.-. .+.....++..+.++|||+|.+++....+
T Consensus 181 ----~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~ika~ 240 (293)
T PTZ00146 181 ----PNIVPIIEDARYPQKYRMLVPMVDVIFADVA--QPDQARIVALNAQYFLKNGGHFIISIKAN 240 (293)
T ss_pred ----CCCEEEECCccChhhhhcccCCCCEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEEEecc
Confidence 1344444333221111112357999876542 45556677778999999999999865443
No 104
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.16 E-value=1e-08 Score=97.81 Aligned_cols=142 Identities=16% Similarity=0.179 Sum_probs=93.6
Q ss_pred ecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCC
Q 023543 99 MWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRG 174 (281)
Q Consensus 99 ~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~ 174 (281)
.-.++.+++.++. ..++.+|||+|||+|..++.++.. +.+|+++|+ +.+++.+++|++.+++.
T Consensus 235 qd~~s~lv~~~l~--------~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~----- 301 (444)
T PRK14902 235 QDESSMLVAPALD--------PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT----- 301 (444)
T ss_pred EChHHHHHHHHhC--------CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----
Confidence 3445666666553 246789999999999999988864 458999999 88999999999998875
Q ss_pred ceEEEEEecCCCCCCCcCCCCCcEEEEccccCCC---------------C-------cHHHHHHHHHHhhCCCcEEEEEE
Q 023543 175 SAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSE---------------G-------AVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 175 ~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~---------------~-------~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
++.+...|..+... .+ ..+||+|++.-..+.. . ....+++.+.++|+|||.++.+.
T Consensus 302 ~v~~~~~D~~~~~~-~~-~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 302 NIETKALDARKVHE-KF-AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred eEEEEeCCcccccc-hh-cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 47777665433211 11 2579999863321111 1 12467889999999999977653
Q ss_pred -ee---eChhHHHHHHHHHhcCCeEEEE
Q 023543 233 -EL---RNDSVLEYFLEAAMKDFVIGRV 256 (281)
Q Consensus 233 -~~---r~~~~~~~fl~~~~~~f~v~~i 256 (281)
.. .+....+.|++. ...|.+..+
T Consensus 380 cs~~~~Ene~vv~~~l~~-~~~~~~~~~ 406 (444)
T PRK14902 380 CTIEKEENEEVIEAFLEE-HPEFELVPL 406 (444)
T ss_pred CCCChhhhHHHHHHHHHh-CCCcEEecc
Confidence 22 233344555543 124665544
No 105
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.15 E-value=4.2e-10 Score=83.24 Aligned_cols=100 Identities=20% Similarity=0.245 Sum_probs=78.3
Q ss_pred eEEEECCCcCHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEc
Q 023543 125 KIVELGSGCGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGS 202 (281)
Q Consensus 125 ~VLELGcGtG~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~ 202 (281)
+|+|+|||+|..+..++. .+.+++++|. +.++..++++...+.. .++.+...++.+... ...++||+|++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~--~~~~~~d~i~~~ 73 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLA-----DNVEVLKGDAEELPP--EADESFDVIISD 73 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccc-----cceEEEEcChhhhcc--ccCCceEEEEEc
Confidence 589999999999888887 5568999999 7778888764443332 356676666544322 234689999999
Q ss_pred cccCC-CCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 203 DVIYS-EGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 203 d~iy~-~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
.+++. ......+++.+.++++++|.+++.
T Consensus 74 ~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 74 PPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred cceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 99888 889999999999999999998876
No 106
>PLN02672 methionine S-methyltransferase
Probab=99.15 E-value=1e-09 Score=112.97 Aligned_cols=152 Identities=16% Similarity=0.117 Sum_probs=103.2
Q ss_pred chHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCC-------
Q 023543 101 DSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHG------- 170 (281)
Q Consensus 101 ~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~------- 170 (281)
+-|..|.+.|.... ...+++++|||||||+|.+++.+++.. ++|+++|+ +++++.+++|+..|++..
T Consensus 100 peTE~lve~L~~~~---~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~ 176 (1082)
T PLN02672 100 DWSFTFYEGLNRHP---DSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYD 176 (1082)
T ss_pred hhHHHHHHHHHhcc---cccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccc
Confidence 45677777764421 112467899999999999999999854 58999999 889999999999986430
Q ss_pred ----CCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCC---------------C-----------------------
Q 023543 171 ----DLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYS---------------E----------------------- 208 (281)
Q Consensus 171 ----~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~---------------~----------------------- 208 (281)
....++.+..-||.+.... .+.+||+||++-..-. +
T Consensus 177 ~~~~~l~~rV~f~~sDl~~~~~~--~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL 254 (1082)
T PLN02672 177 GEGKTLLDRVEFYESDLLGYCRD--NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGL 254 (1082)
T ss_pred cccccccccEEEEECchhhhccc--cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHH
Confidence 0123678888777543311 1136898888544210 0
Q ss_pred CcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHH-HHHHHHhcCCeEEEEecC
Q 023543 209 GAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLE-YFLEAAMKDFVIGRVEQT 259 (281)
Q Consensus 209 ~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~-~fl~~~~~~f~v~~i~~~ 259 (281)
..+..++....++|+|||.+++-...+...... ..+.. .+|....+.+.
T Consensus 255 ~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~~v~~~l~~~--~gf~~~~~~~~ 304 (1082)
T PLN02672 255 GLIARAVEEGISVIKPMGIMIFNMGGRPGQAVCERLFER--RGFRITKLWQT 304 (1082)
T ss_pred HHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHHH--CCCCeeEEeee
Confidence 013677888888999999988877666655444 34433 57877666544
No 107
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.15 E-value=3.3e-10 Score=98.15 Aligned_cols=96 Identities=21% Similarity=0.251 Sum_probs=73.8
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||+|||+|..+..+++.+.+|+++|+ +.+++.++++...++.. .++.+...++. ..+.+||+|
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~----~~i~~~~~d~~------~~~~~fD~v 131 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLA----GNITFEVGDLE------SLLGRFDTV 131 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCc----cCcEEEEcCch------hccCCcCEE
Confidence 46789999999999999999998999999999 88999999998776553 35666665532 124679999
Q ss_pred EEccccCC--CCcHHHHHHHHHHhhCCCc
Q 023543 200 LGSDVIYS--EGAVGDLLDTLLQLCGTQT 226 (281)
Q Consensus 200 ia~d~iy~--~~~~~~ll~~l~~ll~~~g 226 (281)
++.+++++ ......+++.+.+++++++
T Consensus 132 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~ 160 (230)
T PRK07580 132 VCLDVLIHYPQEDAARMLAHLASLTRGSL 160 (230)
T ss_pred EEcchhhcCCHHHHHHHHHHHHhhcCCeE
Confidence 99999855 3456677777777664433
No 108
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.15 E-value=1.5e-08 Score=96.20 Aligned_cols=138 Identities=20% Similarity=0.155 Sum_probs=90.1
Q ss_pred chHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceE
Q 023543 101 DSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAV 177 (281)
Q Consensus 101 ~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~ 177 (281)
.+|...+.++. ..+|.+|||+|||+|..++.++..+ .+|+++|+ +.+++.+++|++.++.. +.
T Consensus 231 ~~s~~~~~~l~--------~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~------~~ 296 (427)
T PRK10901 231 AAAQLAATLLA--------PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK------AT 296 (427)
T ss_pred HHHHHHHHHcC--------CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC------eE
Confidence 34555555553 2578899999999999999888754 48999999 88999999999998753 34
Q ss_pred EEEEecCCCCCCCcCCCCCcEEEEccccCC---------------C-------CcHHHHHHHHHHhhCCCcEEEEEEe--
Q 023543 178 VTELTWGDDPDQDLIQPLPDYVLGSDVIYS---------------E-------GAVGDLLDTLLQLCGTQTTIFLAGE-- 233 (281)
Q Consensus 178 ~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~---------------~-------~~~~~ll~~l~~ll~~~g~~~l~~~-- 233 (281)
+...|..+. .......+||.|++.-.... + .....++..+.++|+|||.++++.-
T Consensus 297 ~~~~D~~~~-~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 297 VIVGDARDP-AQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred EEEcCcccc-hhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 455443221 11122457999985222111 0 1134789999999999999876652
Q ss_pred --eeChhHHHHHHHHHhcCCeEE
Q 023543 234 --LRNDSVLEYFLEAAMKDFVIG 254 (281)
Q Consensus 234 --~r~~~~~~~fl~~~~~~f~v~ 254 (281)
..+...++.|++. ..+|.+.
T Consensus 376 ~~~Ene~~v~~~l~~-~~~~~~~ 397 (427)
T PRK10901 376 LPEENEQQIKAFLAR-HPDAELL 397 (427)
T ss_pred ChhhCHHHHHHHHHh-CCCCEEe
Confidence 2344455556643 2356543
No 109
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=4.8e-10 Score=95.11 Aligned_cols=100 Identities=15% Similarity=0.186 Sum_probs=78.8
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
..++.+|||+|||||..+..+|++..+|+.+|. ++..+.|++|++..+.. ++.+..-|-....+ ...|||.
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~-----nV~v~~gDG~~G~~---~~aPyD~ 141 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYE-----NVTVRHGDGSKGWP---EEAPYDR 141 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCC-----ceEEEECCcccCCC---CCCCcCE
Confidence 457899999999999999999999889999999 88899999999999876 57777644211111 2379999
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
|+..... +.+-+.+.+.|++||++++-..
T Consensus 142 I~Vtaaa------~~vP~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 142 IIVTAAA------PEVPEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred EEEeecc------CCCCHHHHHhcccCCEEEEEEc
Confidence 9986665 5556677778999999766544
No 110
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.15 E-value=2.9e-11 Score=102.76 Aligned_cols=133 Identities=17% Similarity=0.155 Sum_probs=92.5
Q ss_pred CeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEc
Q 023543 124 KKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGS 202 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~ 202 (281)
+++||||||||+.|..+-.+..+.+++|+ ..|++.+.+.=--..+-. ..-+. +.......+||+|.++
T Consensus 127 ~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD~L~~--Aea~~---------Fl~~~~~er~DLi~Aa 195 (287)
T COG4976 127 RRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYDTLYV--AEAVL---------FLEDLTQERFDLIVAA 195 (287)
T ss_pred ceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccchHHHHH--HHHHH---------HhhhccCCcccchhhh
Confidence 69999999999999999888889999999 678887764311100000 00000 1112345789999999
Q ss_pred cccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeC-------------hhHHHHHHHHHh-cCCeEEEEecCCCCCCCCC
Q 023543 203 DVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRN-------------DSVLEYFLEAAM-KDFVIGRVEQTQWHPDYCS 267 (281)
Q Consensus 203 d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~-------------~~~~~~fl~~~~-~~f~v~~i~~~~~~~~~~~ 267 (281)
||+-+...++.++-....+|+|||.+.++.+.-. .......-..+. .||.+..+++..++.+-..
T Consensus 196 DVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR~d~g~ 274 (287)
T COG4976 196 DVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIRRDAGE 274 (287)
T ss_pred hHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccchhhcCC
Confidence 9999999999999999999999999988865321 111111223333 4999999988776654443
No 111
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.14 E-value=1.5e-09 Score=93.31 Aligned_cols=119 Identities=15% Similarity=0.087 Sum_probs=81.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcC---CEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC-----CCcC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLG---AQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD-----QDLI 192 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g---~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~-----~~~~ 192 (281)
.++.+|||||||+|..+..+++.. .+|+++|+..+ +.. .++.+...|+.+... ..+.
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~----------~~~-----~~v~~i~~D~~~~~~~~~i~~~~~ 114 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM----------DPI-----VGVDFLQGDFRDELVLKALLERVG 114 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc----------cCC-----CCcEEEecCCCChHHHHHHHHHhC
Confidence 567899999999999998888753 47999999443 111 246677766554210 0134
Q ss_pred CCCCcEEEEccccCCCCc-----------HHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhcCCeEEEE
Q 023543 193 QPLPDYVLGSDVIYSEGA-----------VGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGRV 256 (281)
Q Consensus 193 ~~~fD~Iia~d~iy~~~~-----------~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~v~~i 256 (281)
+.+||+|++.-..+.... +..+++.+.++|+|||.+++... +.. .+..|+..++..|.-..+
T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~-~~~-~~~~~l~~l~~~f~~v~~ 187 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF-QGE-GFDEYLREIRSLFTKVKV 187 (209)
T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe-cCc-CHHHHHHHHHhCceEEEE
Confidence 578999998654443211 25688999999999999888643 222 245678888888875554
No 112
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.13 E-value=7.7e-10 Score=95.01 Aligned_cols=102 Identities=14% Similarity=0.073 Sum_probs=81.1
Q ss_pred CCCeEEEECCCcCHHHHHHHHcCC---EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 122 HGKKIVELGSGCGLVGCIAALLGA---QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g~---~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
++.+|||+|||+|..+..+++.+. +++++|+ +.+++.+++|.. .. .++.+...+..+. ....++||
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~----~~i~~~~~d~~~~---~~~~~~~D 108 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LP----LNIEFIQADAEAL---PFEDNSFD 108 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cC----CCceEEecchhcC---CCCCCcEE
Confidence 678999999999999888887544 7999999 788998888765 11 3456666554332 12346799
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
+|+++..+++......+++.+.++|+|||.+++...
T Consensus 109 ~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 109 AVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred EEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 999999998888899999999999999999887654
No 113
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.13 E-value=5.7e-10 Score=93.60 Aligned_cols=117 Identities=15% Similarity=0.092 Sum_probs=87.0
Q ss_pred CeEEEECCCcCHHHH-HHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceE-EEEEecCCCCCCCcCCCCCcEEE
Q 023543 124 KKIVELGSGCGLVGC-IAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAV-VTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 124 ~~VLELGcGtG~~~i-~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~-~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
..|||+|||||..=- .--+.+..|+++|. +.|-+.+.+.+.+|... ++. +...+ ++... .+.+.++|.|+
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~-----~~~~fvva~-ge~l~-~l~d~s~DtVV 150 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPL-----QVERFVVAD-GENLP-QLADGSYDTVV 150 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCc-----ceEEEEeec-hhcCc-ccccCCeeeEE
Confidence 368999999994322 22235778999999 88999999999988432 444 33333 22222 35778999999
Q ss_pred EccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeCh-hHHHHHHHHH
Q 023543 201 GSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRND-SVLEYFLEAA 247 (281)
Q Consensus 201 a~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~-~~~~~fl~~~ 247 (281)
+.-++....+....++.+.++|+|||++++..+.+.+ +.+..+++..
T Consensus 151 ~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v 198 (252)
T KOG4300|consen 151 CTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQV 198 (252)
T ss_pred EEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHH
Confidence 9999999999999999999999999999988777654 3444444443
No 114
>PRK06922 hypothetical protein; Provisional
Probab=99.13 E-value=4e-10 Score=109.85 Aligned_cols=106 Identities=17% Similarity=0.191 Sum_probs=79.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHH--cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAAL--LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~--~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.++.+|||+|||+|..+..++. .+.+|+++|+ +.|++.++++...++. ++.+...|..+ .+..+.+.+||
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~------~ie~I~gDa~d-Lp~~fedeSFD 489 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR------SWNVIKGDAIN-LSSSFEKESVD 489 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC------CeEEEEcchHh-CccccCCCCEE
Confidence 4688999999999998877776 3568999999 7889999988765432 34444433222 11124456899
Q ss_pred EEEEccccCC-------------CCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 198 YVLGSDVIYS-------------EGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 198 ~Iia~d~iy~-------------~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
+|+++.++++ ......+++.+.+.|+|||.+++...
T Consensus 490 vVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 490 TIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred EEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 9999877653 23568899999999999999998864
No 115
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.11 E-value=6e-10 Score=107.05 Aligned_cols=104 Identities=18% Similarity=0.192 Sum_probs=79.8
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++++|||||||+|..+..+++.+.+|+++|+ +.+++.+++ .++.. .++.+...+.... ...+++.+||+|
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~---~~~~~----~~i~~~~~d~~~~-~~~~~~~~fD~I 107 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES---INGHY----KNVKFMCADVTSP-DLNISDGSVDLI 107 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH---HhccC----CceEEEEeccccc-ccCCCCCCEEEE
Confidence 35779999999999999999998889999999 788865443 33221 3566777665321 222455789999
Q ss_pred EEccccCCCCc--HHHHHHHHHHhhCCCcEEEEEE
Q 023543 200 LGSDVIYSEGA--VGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 200 ia~d~iy~~~~--~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
++..++++... ...+++.+.++|+|||.+++..
T Consensus 108 ~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 108 FSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred ehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 99999887544 6899999999999999988753
No 116
>PRK06202 hypothetical protein; Provisional
Probab=99.10 E-value=1.5e-09 Score=94.64 Aligned_cols=103 Identities=16% Similarity=0.094 Sum_probs=72.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHH----cC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAAL----LG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQ 193 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~----~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~ 193 (281)
.++.+|||||||+|.++..++. .| .+|+++|+ ++|++.++++...++. .+...+-+. .. ..+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~--------~~~~~~~~~-l~--~~~ 127 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGV--------TFRQAVSDE-LV--AEG 127 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCC--------eEEEEeccc-cc--ccC
Confidence 3567999999999998887764 23 48999999 8999999887654432 233322111 11 235
Q ss_pred CCCcEEEEccccCCCCc--HHHHHHHHHHhhCCCcEEEEEEeeeC
Q 023543 194 PLPDYVLGSDVIYSEGA--VGDLLDTLLQLCGTQTTIFLAGELRN 236 (281)
Q Consensus 194 ~~fD~Iia~d~iy~~~~--~~~ll~~l~~ll~~~g~~~l~~~~r~ 236 (281)
.+||+|+++.++++... ...+++.+.++++ |.+++....|.
T Consensus 128 ~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 128 ERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred CCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 68999999999988654 5678999999887 45555554444
No 117
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.09 E-value=7.3e-09 Score=90.43 Aligned_cols=156 Identities=13% Similarity=0.098 Sum_probs=103.1
Q ss_pred eEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHH-cC-CEEEEEec-hhH
Q 023543 79 SLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAAL-LG-AQVILTDL-PDR 155 (281)
Q Consensus 79 ~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~-~g-~~V~~tD~-~~~ 155 (281)
+++|.-.|+++-- =|+ +-.+.+++.+.+.+ ...+++..+||+|||+|.+++.++. ++ ..|+++|. +.+
T Consensus 114 ~l~l~~~pgVlIP-------RpE-TEE~V~~Vid~~~~-~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~A 184 (328)
T KOG2904|consen 114 DLDLVCKPGVLIP-------RPE-TEEWVEAVIDALNN-SEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAA 184 (328)
T ss_pred CceEEecCCeeec-------Ccc-HHHHHHHHHHHHhh-hhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHH
Confidence 4555555655321 155 45566666554322 2245677999999999999998876 33 46999999 778
Q ss_pred HHHHHHHHHHhhcCCCCCCceEEEEE----ecCCCCCCCcCCCCCcEEEEccccCCCC----------------------
Q 023543 156 LRLLKKNIENNLRHGDLRGSAVVTEL----TWGDDPDQDLIQPLPDYVLGSDVIYSEG---------------------- 209 (281)
Q Consensus 156 l~~~~~N~~~n~~~~~~~~~i~~~~l----~w~~~~~~~~~~~~fD~Iia~d~iy~~~---------------------- 209 (281)
+.++.+|+.++.+. +++.++.+ +|.+.. .+...++|+++++...-..+
T Consensus 185 i~La~eN~qr~~l~----g~i~v~~~~me~d~~~~~--~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~ 258 (328)
T KOG2904|consen 185 IKLAKENAQRLKLS----GRIEVIHNIMESDASDEH--PLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGL 258 (328)
T ss_pred HHHHHHHHHHHhhc----CceEEEeccccccccccc--ccccCceeEEecCCCcccccchhhcCchheecCchhhhcccc
Confidence 99999999999987 67777755 333222 23456788888765432211
Q ss_pred ----cHHHHHHHHHHhhCCCcEEEEEEee--eChhHHHHHHHHHhc
Q 023543 210 ----AVGDLLDTLLQLCGTQTTIFLAGEL--RNDSVLEYFLEAAMK 249 (281)
Q Consensus 210 ----~~~~ll~~l~~ll~~~g~~~l~~~~--r~~~~~~~fl~~~~~ 249 (281)
.+-.++.-..++|+|||.+.+.... +.+.....++.....
T Consensus 259 eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~~~lv~~~m~s~~~ 304 (328)
T KOG2904|consen 259 EGYDNLVHYWLLATRMLQPGGFEQLELVERKEHSYLVRIWMISLKD 304 (328)
T ss_pred chhHHHHHHHHhhHhhcccCCeEEEEecccccCcHHHHHHHHhchh
Confidence 1455677778899999999988774 444444555555443
No 118
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.08 E-value=2.7e-09 Score=92.34 Aligned_cols=120 Identities=14% Similarity=0.083 Sum_probs=90.2
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHc--------CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALL--------GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD 190 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~--------g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~ 190 (281)
...+.+|||++||||-++..+.+. +.+|+..|+ ++||..+++.+...++.. ..++.+... +..+.+
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~--~~~~~w~~~---dAE~Lp 172 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKA--SSRVEWVEG---DAEDLP 172 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCc--CCceEEEeC---CcccCC
Confidence 357799999999999888876652 257999999 999999999887766552 123455553 334445
Q ss_pred cCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeCh-hHHHHHH
Q 023543 191 LIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRND-SVLEYFL 244 (281)
Q Consensus 191 ~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~-~~~~~fl 244 (281)
+++..||....+--|-+..+++..++...|.|||||++++-.-.+-. ..++.|.
T Consensus 173 Fdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy 227 (296)
T KOG1540|consen 173 FDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFY 227 (296)
T ss_pred CCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHH
Confidence 67789999999999999999999999999999999998754433322 3444343
No 119
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.08 E-value=9.1e-10 Score=96.26 Aligned_cols=105 Identities=15% Similarity=0.089 Sum_probs=78.8
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC---cCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD---LIQ 193 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~---~~~ 193 (281)
.++++|||+|||+|..++.++.. +.+|+++|+ +++++.+++|++.+++. .++.+...+..+..+.. ...
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~----~~i~~~~gda~~~L~~l~~~~~~ 142 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD----HKINFIQSDALSALDQLLNNDPK 142 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEEccHHHHHHHHHhCCCC
Confidence 57889999999999988777652 358999999 88999999999999876 56777776654322111 113
Q ss_pred CCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 194 PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 194 ~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
++||+|+.- .- ...+..++..+.++++|||.+++-.
T Consensus 143 ~~fD~VfiD-a~--k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 143 PEFDFAFVD-AD--KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred CCCCEEEEC-CC--HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 689998762 21 3456788999999999999887643
No 120
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.08 E-value=7.8e-09 Score=95.67 Aligned_cols=170 Identities=16% Similarity=0.117 Sum_probs=104.8
Q ss_pred ecCCceEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-
Q 023543 74 DACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL- 152 (281)
Q Consensus 74 ~~~g~~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~- 152 (281)
.+.+..+++..+|++|+... +.....|.+++.+.++ ..+.+||||-||+|.+|+.+|..+.+|+|+|+
T Consensus 159 ~~~~~~~~~~~~~~sFfQvN------~~~~~~l~~~~~~~l~-----~~~~~vlDlycG~G~fsl~la~~~~~V~gvE~~ 227 (352)
T PF05958_consen 159 EIQDKGLSFRISPGSFFQVN------PEQNEKLYEQALEWLD-----LSKGDVLDLYCGVGTFSLPLAKKAKKVIGVEIV 227 (352)
T ss_dssp -ECCCTEEEEEETTS---SB------HHHHHHHHHHHHHHCT-----T-TTEEEEES-TTTCCHHHHHCCSSEEEEEES-
T ss_pred eeeccceEEEECCCcCccCc------HHHHHHHHHHHHHHhh-----cCCCcEEEEeecCCHHHHHHHhhCCeEEEeeCC
Confidence 34456688888888877655 4566777777766543 22338999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC-------------CCcCCCCCcEEEEccccCCCCcHHHHHHHHH
Q 023543 153 PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD-------------QDLIQPLPDYVLGSDVIYSEGAVGDLLDTLL 219 (281)
Q Consensus 153 ~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~-------------~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~ 219 (281)
+++++.|++|+..|++. ++.+...+-++... ..+....+|+||. |+.- ...-+.+++.+.
T Consensus 228 ~~av~~A~~Na~~N~i~-----n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vil-DPPR-~G~~~~~~~~~~ 300 (352)
T PF05958_consen 228 EEAVEDARENAKLNGID-----NVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVIL-DPPR-AGLDEKVIELIK 300 (352)
T ss_dssp HHHHHHHHHHHHHTT-------SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE----T-T-SCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCC-----cceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEE-cCCC-CCchHHHHHHHh
Confidence 89999999999999986 78887654322111 0112235787764 2211 112255666655
Q ss_pred HhhCCCcEEEEEEeeeChhHHHHHHHHHhcCCeEEEEecCCCCCCCCC
Q 023543 220 QLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGRVEQTQWHPDYCS 267 (281)
Q Consensus 220 ~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~v~~i~~~~~~~~~~~ 267 (281)
+ ..-++|++|. +.++.+=+..+.++|++..+.--.+-|.-.+
T Consensus 301 ~---~~~ivYvSCn---P~tlaRDl~~L~~~y~~~~v~~~DmFP~T~H 342 (352)
T PF05958_consen 301 K---LKRIVYVSCN---PATLARDLKILKEGYKLEKVQPVDMFPQTHH 342 (352)
T ss_dssp H---SSEEEEEES----HHHHHHHHHHHHCCEEEEEEEEE-SSTTSS-
T ss_pred c---CCeEEEEECC---HHHHHHHHHHHhhcCEEEEEEEeecCCCCCc
Confidence 4 3567788775 3443333445567999998876555554443
No 121
>PLN03075 nicotianamine synthase; Provisional
Probab=99.07 E-value=1.8e-09 Score=96.74 Aligned_cols=104 Identities=13% Similarity=0.048 Sum_probs=81.5
Q ss_pred CCCeEEEECCCcC-HHHHHHHH---cCCEEEEEec-hhHHHHHHHHHHH-hhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 122 HGKKIVELGSGCG-LVGCIAAL---LGAQVILTDL-PDRLRLLKKNIEN-NLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 122 ~~~~VLELGcGtG-~~~i~~a~---~g~~V~~tD~-~~~l~~~~~N~~~-n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
.+++|+|+|||.| +.++.++. .+.+++++|+ +++++.|++++.. .++. .++.|...|..+... ...+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~----~rV~F~~~Da~~~~~---~l~~ 195 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLS----KRMFFHTADVMDVTE---SLKE 195 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCcc----CCcEEEECchhhccc---ccCC
Confidence 7789999999965 55666653 3457999999 8999999999965 5554 578888876544211 1367
Q ss_pred CcEEEEccccCC-CCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 196 PDYVLGSDVIYS-EGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 196 fD~Iia~d~iy~-~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
||+|.+.-++|+ ......+++.+.+.|+|||.+++..
T Consensus 196 FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 196 YDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 999999966666 4889999999999999999988775
No 122
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=99.07 E-value=5.5e-10 Score=99.81 Aligned_cols=148 Identities=14% Similarity=0.160 Sum_probs=102.3
Q ss_pred ccccCCCeEEEECCCcCHHHHHHHHcCC-EEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 118 MLLLHGKKIVELGSGCGLVGCIAALLGA-QVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 118 ~~~~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
...++++.|||+|||+|+++..+|+.|+ +|++++-++|.+.+++-++.|.+. +++.+.....++ .. ..++.
T Consensus 173 ~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~~----~rItVI~GKiEd---ie-LPEk~ 244 (517)
T KOG1500|consen 173 HSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNLA----DRITVIPGKIED---IE-LPEKV 244 (517)
T ss_pred ccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCcc----ceEEEccCcccc---cc-Cchhc
Confidence 3468999999999999999999999998 599999999999999999999765 678887744332 22 34789
Q ss_pred cEEEEc---cccCCCCcHHHHHHHHHHhhCCCcEEEEEEe--e-eChhHHHHHHHHHh----------cCCeEEEEecCC
Q 023543 197 DYVLGS---DVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE--L-RNDSVLEYFLEAAM----------KDFVIGRVEQTQ 260 (281)
Q Consensus 197 D~Iia~---d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~--~-r~~~~~~~fl~~~~----------~~f~v~~i~~~~ 260 (281)
|+||+- -.++++.+++..+.+- +.|+|+|.++=... . -......-|.+.+. .|-+...+....
T Consensus 245 DviISEPMG~mL~NERMLEsYl~Ar-k~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFWyQq~fyGVdLt~L~g~a 323 (517)
T KOG1500|consen 245 DVIISEPMGYMLVNERMLESYLHAR-KWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFWYQQNFYGVDLTPLYGSA 323 (517)
T ss_pred cEEEeccchhhhhhHHHHHHHHHHH-hhcCCCCcccCcccceeecccchHHHHHHHHhhhhhhhhhccccccchhhhhhh
Confidence 999984 4466788888877765 89999998763321 1 11111111222221 233455555555
Q ss_pred CCCCCCCCcEEEEE
Q 023543 261 WHPDYCSPRVVVYI 274 (281)
Q Consensus 261 ~~~~~~~~~~~i~~ 274 (281)
..+.|+++-+..|.
T Consensus 324 ~~eYFrQPvVDtFD 337 (517)
T KOG1500|consen 324 HQEYFRQPVVDTFD 337 (517)
T ss_pred hhhhhccccccccc
Confidence 66677776555443
No 123
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.07 E-value=6.8e-09 Score=99.04 Aligned_cols=140 Identities=19% Similarity=0.150 Sum_probs=92.7
Q ss_pred eecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCC
Q 023543 98 VMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLR 173 (281)
Q Consensus 98 ~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~ 173 (281)
.+++.+..++-.+.. ..+|.+|||+|||+|..++.++.. +.+|+++|+ +.+++.+++|++.+++.
T Consensus 233 ~vqd~~s~l~~~~l~-------~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~---- 301 (445)
T PRK14904 233 SVQNPTQALACLLLN-------PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT---- 301 (445)
T ss_pred EEeCHHHHHHHHhcC-------CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC----
Confidence 456544444444432 257889999999999888877753 458999999 88999999999998764
Q ss_pred CceEEEEEecCCCCCCCcCCCCCcEEEEc------cccC-------C--CC-------cHHHHHHHHHHhhCCCcEEEEE
Q 023543 174 GSAVVTELTWGDDPDQDLIQPLPDYVLGS------DVIY-------S--EG-------AVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 174 ~~i~~~~l~w~~~~~~~~~~~~fD~Iia~------d~iy-------~--~~-------~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
++.+...|..+.. ...+||+|+.- .++. . +. ....++..+.++|+|||+++++
T Consensus 302 -~v~~~~~Da~~~~----~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvys 376 (445)
T PRK14904 302 -IIETIEGDARSFS----PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYA 376 (445)
T ss_pred -eEEEEeCcccccc----cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 5666665543221 23579999841 1111 1 01 1346899999999999998776
Q ss_pred Eeee----ChhHHHHHHHHHhcCCeEE
Q 023543 232 GELR----NDSVLEYFLEAAMKDFVIG 254 (281)
Q Consensus 232 ~~~r----~~~~~~~fl~~~~~~f~v~ 254 (281)
.-.- |....+.|++. ..+|.+.
T Consensus 377 tcs~~~~Ene~~v~~~l~~-~~~~~~~ 402 (445)
T PRK14904 377 TCSIEPEENELQIEAFLQR-HPEFSAE 402 (445)
T ss_pred eCCCChhhHHHHHHHHHHh-CCCCEEe
Confidence 5322 34456677753 2256543
No 124
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=99.07 E-value=7.7e-11 Score=103.61 Aligned_cols=137 Identities=26% Similarity=0.349 Sum_probs=95.2
Q ss_pred cCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcC-CEEEEEec-hhHHHHH-HHHHHHhhcCC-
Q 023543 95 TGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLG-AQVILTDL-PDRLRLL-KKNIENNLRHG- 170 (281)
Q Consensus 95 tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g-~~V~~tD~-~~~l~~~-~~N~~~n~~~~- 170 (281)
.|.++|.+|..|..++.... -....+.+|+|||||||+|+.++.+.+.| ..+.+.|+ .+.++.. --|+..|....
T Consensus 90 Gg~k~wecS~dl~~~l~~e~-~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~ 168 (282)
T KOG2920|consen 90 GGLKLWECSVDLLPYLKEEI-GAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGV 168 (282)
T ss_pred cceEEeecHHHHHHHHHHHh-hhheEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhh
Confidence 38999999999999998653 12235789999999999999999999988 57999999 5666322 22333322110
Q ss_pred ---CCCCceEEEEE---ecCCCCCCCcCC-CCCcEEEEccccCCCCcHHHH-HHHHHHhhCCCcEEEEEEeeeC
Q 023543 171 ---DLRGSAVVTEL---TWGDDPDQDLIQ-PLPDYVLGSDVIYSEGAVGDL-LDTLLQLCGTQTTIFLAGELRN 236 (281)
Q Consensus 171 ---~~~~~i~~~~l---~w~~~~~~~~~~-~~fD~Iia~d~iy~~~~~~~l-l~~l~~ll~~~g~~~l~~~~r~ 236 (281)
....-..+..- ||.- .... .+||+|+++.++|.+...+.+ ..+...++++.|+++++.+..+
T Consensus 169 ~~~e~~~~~~i~~s~l~dg~~----~~t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aAK~~y 238 (282)
T KOG2920|consen 169 EEKENHKVDEILNSLLSDGVF----NHTERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAAKKLY 238 (282)
T ss_pred hhhhcccceeccccccccchh----hhccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhhHhhc
Confidence 00001111111 3311 1111 389999999999999999988 7777788899999998877654
No 125
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.07 E-value=1.7e-09 Score=89.09 Aligned_cols=143 Identities=15% Similarity=0.156 Sum_probs=96.1
Q ss_pred hHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCC--EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEE
Q 023543 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGA--QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVV 178 (281)
Q Consensus 102 ~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~--~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~ 178 (281)
+-..+.+||..+.......-...+|||||||.|.+-.-+++-|. +.+++|+ +.++++|+.-+++++.. +.|++
T Consensus 47 ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~----n~I~f 122 (227)
T KOG1271|consen 47 AEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFS----NEIRF 122 (227)
T ss_pred HHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCC----cceeE
Confidence 34557788877533211112223999999999998888888775 4999999 78999988778888876 45999
Q ss_pred EEEecCCCCCCCcCCCCCcEEEEccccCC--------CCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhc-
Q 023543 179 TELTWGDDPDQDLIQPLPDYVLGSDVIYS--------EGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMK- 249 (281)
Q Consensus 179 ~~l~w~~~~~~~~~~~~fD~Iia~d~iy~--------~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~- 249 (281)
+++|.-++ .+...+||+|+-..++=- ..-+...+..+.++|+|+|+++|..-....+. ..+.+..
T Consensus 123 ~q~DI~~~---~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dE---Lv~~f~~~ 196 (227)
T KOG1271|consen 123 QQLDITDP---DFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDE---LVEEFENF 196 (227)
T ss_pred EEeeccCC---cccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHH---HHHHHhcC
Confidence 99887543 345578898886433211 11124567788899999999887655443332 3344443
Q ss_pred CCeEE
Q 023543 250 DFVIG 254 (281)
Q Consensus 250 ~f~v~ 254 (281)
+|.+.
T Consensus 197 ~f~~~ 201 (227)
T KOG1271|consen 197 NFEYL 201 (227)
T ss_pred CeEEE
Confidence 46543
No 126
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.05 E-value=1.1e-08 Score=97.01 Aligned_cols=126 Identities=14% Similarity=0.110 Sum_probs=85.8
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.+|.+|||+|||+|..++.++.. +.+|+++|+ +.+++.+++|+++.++. ++.+...|+.+.. ...+.+|
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-----~v~~~~~Da~~l~--~~~~~~f 308 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-----SIEIKIADAERLT--EYVQDTF 308 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----eEEEEECchhhhh--hhhhccC
Confidence 56889999999999888877764 468999999 88999999999998764 4667665543211 1234679
Q ss_pred cEEEEccccCC-------C---------------CcHHHHHHHHHHhhCCCcEEEEEEeee----ChhHHHHHHHHHhcC
Q 023543 197 DYVLGSDVIYS-------E---------------GAVGDLLDTLLQLCGTQTTIFLAGELR----NDSVLEYFLEAAMKD 250 (281)
Q Consensus 197 D~Iia~d~iy~-------~---------------~~~~~ll~~l~~ll~~~g~~~l~~~~r----~~~~~~~fl~~~~~~ 250 (281)
|.|+.--.... + .....++..+.++|+|||.++++.-.- +...++.|++. ..+
T Consensus 309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~-~~~ 387 (431)
T PRK14903 309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYE-QKD 387 (431)
T ss_pred CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHh-CCC
Confidence 99986222111 1 123667888899999999876654332 34455556543 235
Q ss_pred CeEE
Q 023543 251 FVIG 254 (281)
Q Consensus 251 f~v~ 254 (281)
|.+.
T Consensus 388 ~~~~ 391 (431)
T PRK14903 388 AEVI 391 (431)
T ss_pred cEEe
Confidence 6543
No 127
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.05 E-value=1.5e-08 Score=96.07 Aligned_cols=141 Identities=21% Similarity=0.158 Sum_probs=93.1
Q ss_pred ecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCc
Q 023543 99 MWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGS 175 (281)
Q Consensus 99 ~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~ 175 (281)
.-.++..++.++. ..+|.+|||+|||+|..++.++.. +.+|+++|+ +++++.+++|++.++.. ..
T Consensus 223 Qd~~s~~~~~~L~--------~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~----~~ 290 (426)
T TIGR00563 223 QDASAQWVATWLA--------PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT----IK 290 (426)
T ss_pred ECHHHHHHHHHhC--------CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC----eE
Confidence 3456777777664 246889999999999999888874 368999999 88999999999998764 12
Q ss_pred eEEEEEecCCCCCCCcCCCCCcEEEE------ccccCCCCc----------------HHHHHHHHHHhhCCCcEEEEEE-
Q 023543 176 AVVTELTWGDDPDQDLIQPLPDYVLG------SDVIYSEGA----------------VGDLLDTLLQLCGTQTTIFLAG- 232 (281)
Q Consensus 176 i~~~~l~w~~~~~~~~~~~~fD~Iia------~d~iy~~~~----------------~~~ll~~l~~ll~~~g~~~l~~- 232 (281)
+.+...+.... .......+||.|+. ..++...+. ...++..+.++|+|||.++++.
T Consensus 291 v~~~~~d~~~~-~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 291 AETKDGDGRGP-SQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred EEEeccccccc-cccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 22233221111 11113467999985 223322111 4678899999999999877653
Q ss_pred ee---eChhHHHHHHHHHhcCCeE
Q 023543 233 EL---RNDSVLEYFLEAAMKDFVI 253 (281)
Q Consensus 233 ~~---r~~~~~~~fl~~~~~~f~v 253 (281)
.. .+...++.|++.. .+|.+
T Consensus 370 s~~~~Ene~~v~~~l~~~-~~~~~ 392 (426)
T TIGR00563 370 SVLPEENSEQIKAFLQEH-PDFPF 392 (426)
T ss_pred CCChhhCHHHHHHHHHhC-CCCee
Confidence 33 3556667777643 24543
No 128
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.04 E-value=3.4e-09 Score=96.67 Aligned_cols=98 Identities=10% Similarity=0.074 Sum_probs=72.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcC---CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLG---AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g---~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++.+|||+|||+|..++.+++.. .+|+++|+ +++++.+++|+..++.. ++.+...|..... ....+|
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-----nV~~i~gD~~~~~---~~~~~f 150 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-----NVIFVCGDGYYGV---PEFAPY 150 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----cEEEEeCChhhcc---cccCCc
Confidence 467899999999999999888743 36999999 88999999999988764 5666654432211 122579
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
|+|+.+..+ ..+...+.+.|+|||.+++..
T Consensus 151 D~Ii~~~g~------~~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 151 DVIFVTVGV------DEVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cEEEECCch------HHhHHHHHHhcCCCCEEEEEe
Confidence 999986443 344556778899999977754
No 129
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.04 E-value=1.4e-09 Score=96.69 Aligned_cols=109 Identities=14% Similarity=0.110 Sum_probs=75.9
Q ss_pred CCCeEEEECCCcCH----HHHHHHHc-------CCEEEEEec-hhHHHHHHHHHHH----hhcC----------------
Q 023543 122 HGKKIVELGSGCGL----VGCIAALL-------GAQVILTDL-PDRLRLLKKNIEN----NLRH---------------- 169 (281)
Q Consensus 122 ~~~~VLELGcGtG~----~~i~~a~~-------g~~V~~tD~-~~~l~~~~~N~~~----n~~~---------------- 169 (281)
++.+|+|+|||||- +++.++.. +.+|+|||+ +.||+.|++++-. .++.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 34699999999995 56656543 357999999 8899999986421 1110
Q ss_pred --CCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCC--CcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 170 --GDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSE--GAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 170 --~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~--~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
.....++.+...+..+ ......+||+|++..++++. .....+++.+.+.|+|||.+++...
T Consensus 179 v~~~ir~~V~F~~~dl~~---~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 179 VKPELKERVRFAKHNLLA---ESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EChHHhCcCEEeeccCCC---CCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 0011345666655433 22235689999998887664 4567899999999999999988754
No 130
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=1.4e-08 Score=83.73 Aligned_cols=140 Identities=18% Similarity=0.227 Sum_probs=93.4
Q ss_pred CCeEEEECCCcCHHHHHHHH-cC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 123 GKKIVELGSGCGLVGCIAAL-LG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~-~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.+-+||||||+|+++-.+++ .+ +.+.+||+ +.+++..++.++.|+.. +.+..-|... .+.+.+.|+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~------~~~V~tdl~~----~l~~~~VDv 113 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH------IDVVRTDLLS----GLRNESVDV 113 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc------cceeehhHHh----hhccCCccE
Confidence 56899999999999988886 34 35899999 99999999999999764 3333322211 112244554
Q ss_pred EEEccc--------c--------CC-----CCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEE
Q 023543 199 VLGSDV--------I--------YS-----EGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRV 256 (281)
Q Consensus 199 Iia~d~--------i--------y~-----~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i 256 (281)
++-+.. + |- .+..+.|+..+..+|.|.|.+|+....+|.. +..+..++ ++|.+...
T Consensus 114 LvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p--~ei~k~l~~~g~~~~~~ 191 (209)
T KOG3191|consen 114 LVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKP--KEILKILEKKGYGVRIA 191 (209)
T ss_pred EEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCH--HHHHHHHhhcccceeEE
Confidence 443222 1 00 1236889999999999999999988777653 22444444 58887776
Q ss_pred ecCCCCCCCCCCcEEEEEEEec
Q 023543 257 EQTQWHPDYCSPRVVVYILVKK 278 (281)
Q Consensus 257 ~~~~~~~~~~~~~~~i~~~~~k 278 (281)
..... ..+...|++++|.
T Consensus 192 ~~Rk~----~~E~l~ilkf~r~ 209 (209)
T KOG3191|consen 192 MQRKA----GGETLSILKFTRS 209 (209)
T ss_pred EEEec----CCceEEEEEEEeC
Confidence 54332 4566777777763
No 131
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.02 E-value=5.8e-09 Score=96.99 Aligned_cols=141 Identities=23% Similarity=0.147 Sum_probs=99.2
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC-CcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ-DLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~-~~~~~~fD 197 (281)
.+|++||+|-|=||..|+.+|+.|| +||.+|. ..+++.+++|++.|++.. .++.+...|--+.... .-.+.+||
T Consensus 216 ~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~---~~~~~i~~Dvf~~l~~~~~~g~~fD 292 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDG---DRHRFIVGDVFKWLRKAERRGEKFD 292 (393)
T ss_pred ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCc---cceeeehhhHHHHHHHHHhcCCccc
Confidence 5699999999999999999999999 7999999 788999999999999872 3445555332111110 11235899
Q ss_pred EEEEccccCC---------CCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-----cCCeEEEEecCCCCC
Q 023543 198 YVLGSDVIYS---------EGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-----KDFVIGRVEQTQWHP 263 (281)
Q Consensus 198 ~Iia~d~iy~---------~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-----~~f~v~~i~~~~~~~ 263 (281)
+|+.-.+-|- ..++..|+..+.++|+|||+++++...+.-.. +.|...+. .+..+..+......+
T Consensus 293 lIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~-~~f~~~i~~a~~~~~~~~~~~~~~~~~~ 371 (393)
T COG1092 293 LIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSS-DLFLEIIARAAAAAGRRAQEIEGEGQPP 371 (393)
T ss_pred EEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCH-HHHHHHHHHHHHhcCCcEEEeeccCCCC
Confidence 9997444443 34578899999999999999888766554332 23443332 256666665555555
Q ss_pred CC
Q 023543 264 DY 265 (281)
Q Consensus 264 ~~ 265 (281)
++
T Consensus 372 D~ 373 (393)
T COG1092 372 DH 373 (393)
T ss_pred Cc
Confidence 55
No 132
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.02 E-value=1.1e-08 Score=86.21 Aligned_cols=131 Identities=15% Similarity=0.089 Sum_probs=81.0
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcC---CEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC-----CCc
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLG---AQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD-----QDL 191 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g---~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~-----~~~ 191 (281)
..++++|||+|||+|.++..++... .+|+++|++.+. .. .++.+...+..+... ...
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----------~~-----~~i~~~~~d~~~~~~~~~l~~~~ 94 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----------PI-----ENVDFIRGDFTDEEVLNKIRERV 94 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----------cC-----CCceEEEeeCCChhHHHHHHHHh
Confidence 4578999999999999888777642 369999994432 11 235566656543210 012
Q ss_pred CCCCCcEEEEccccC-----CCC------cHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhcCCeEEEEecCC
Q 023543 192 IQPLPDYVLGSDVIY-----SEG------AVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGRVEQTQ 260 (281)
Q Consensus 192 ~~~~fD~Iia~d~iy-----~~~------~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~v~~i~~~~ 260 (281)
...+||+|++....+ ... ..+.+++.+.++|+|||.+++.....+ .+..++..++..|.-..+....
T Consensus 95 ~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~--~~~~~l~~l~~~~~~~~~~~~~ 172 (188)
T TIGR00438 95 GDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGE--EIDEYLNELRKLFEKVKVTKPQ 172 (188)
T ss_pred CCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCc--cHHHHHHHHHhhhceEEEeCCC
Confidence 345799999743221 111 236789999999999999888543222 2345677776677655554433
Q ss_pred CCCCCCC
Q 023543 261 WHPDYCS 267 (281)
Q Consensus 261 ~~~~~~~ 267 (281)
-.....+
T Consensus 173 ~~~~~~~ 179 (188)
T TIGR00438 173 ASRKRSA 179 (188)
T ss_pred CCCcccc
Confidence 3333333
No 133
>PRK04457 spermidine synthase; Provisional
Probab=99.01 E-value=2.5e-09 Score=95.08 Aligned_cols=123 Identities=14% Similarity=0.141 Sum_probs=86.3
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
++++|||||||+|.++..+++. +.+|+++|+ +++++.+++++..+... .++.+..-|..+.... ...+||+
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~----~rv~v~~~Da~~~l~~--~~~~yD~ 139 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENG----ERFEVIEADGAEYIAV--HRHSTDV 139 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCC----CceEEEECCHHHHHHh--CCCCCCE
Confidence 5679999999999999887763 568999999 88999999987654332 4676666443221111 2357999
Q ss_pred EEEccccCCC---C--cHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhcCCe
Q 023543 199 VLGSDVIYSE---G--AVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFV 252 (281)
Q Consensus 199 Iia~d~iy~~---~--~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~ 252 (281)
|+. |..... . ....+++.+.++|+|+|++++-...+.. ....+++.+++.|.
T Consensus 140 I~~-D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~-~~~~~l~~l~~~F~ 196 (262)
T PRK04457 140 ILV-DGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDK-RYDRYLERLESSFE 196 (262)
T ss_pred EEE-eCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCch-hHHHHHHHHHHhcC
Confidence 986 332111 1 2379999999999999998875444443 34567777777785
No 134
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.99 E-value=8.2e-09 Score=85.63 Aligned_cols=77 Identities=21% Similarity=0.221 Sum_probs=57.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||+|||+|.++..++..+.+|+++|+ +.+++.+++|+..+ .++.+...|..+. .+.+.+||+|
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~-------~~v~ii~~D~~~~---~~~~~~~d~v 81 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAA-------DNLTVIHGDALKF---DLPKLQPYKV 81 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccC-------CCEEEEECchhcC---CccccCCCEE
Confidence 45679999999999999999988889999999 78999999887542 3566666554322 2233468988
Q ss_pred EEccccCCC
Q 023543 200 LGSDVIYSE 208 (281)
Q Consensus 200 ia~d~iy~~ 208 (281)
+++ +.|+.
T Consensus 82 i~n-~Py~~ 89 (169)
T smart00650 82 VGN-LPYNI 89 (169)
T ss_pred EEC-CCccc
Confidence 875 45553
No 135
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.99 E-value=1.9e-08 Score=89.48 Aligned_cols=118 Identities=14% Similarity=0.156 Sum_probs=81.0
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.+|.+|||+|||+|..++.++.. ...|+++|+ +.+++.+++|++.++.. ++.+...|.... . ...++|
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-----~v~~~~~D~~~~-~--~~~~~f 141 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-----NVAVTNFDGRVF-G--AAVPKF 141 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-----cEEEecCCHHHh-h--hhccCC
Confidence 46889999999999998887763 347999999 88999999999998764 566666553221 1 123469
Q ss_pred cEEEEccccCC-------C---------------CcHHHHHHHHHHhhCCCcEEEEEEeeeC----hhHHHHHHHH
Q 023543 197 DYVLGSDVIYS-------E---------------GAVGDLLDTLLQLCGTQTTIFLAGELRN----DSVLEYFLEA 246 (281)
Q Consensus 197 D~Iia~d~iy~-------~---------------~~~~~ll~~l~~ll~~~g~~~l~~~~r~----~~~~~~fl~~ 246 (281)
|+|+.--.... + .....+++...++|+|||+++.+.-.-+ ....+.|++.
T Consensus 142 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~ 217 (264)
T TIGR00446 142 DAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEK 217 (264)
T ss_pred CEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHh
Confidence 99886222111 1 1234588888999999998776643322 3455556544
No 136
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.99 E-value=3.9e-09 Score=97.96 Aligned_cols=106 Identities=15% Similarity=0.060 Sum_probs=81.8
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.+..+||||||+|...+.+|+. ...++|+|+ +.++..+.+++..+++. ++.+...|..... ..+.+..+|.
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~-----NV~~i~~DA~~ll-~~~~~~s~D~ 195 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK-----NLLIINYDARLLL-ELLPSNSVEK 195 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC-----cEEEEECCHHHhh-hhCCCCceeE
Confidence 4569999999999999999985 457999999 88999999999988765 6887776653322 2345678999
Q ss_pred EEEccccCCCC------cHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 199 VLGSDVIYSEG------AVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 199 Iia~d~iy~~~------~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
|...-..-++. ..+.+++.+.++|+|||.+.+..-
T Consensus 196 I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 196 IFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred EEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 98754433322 136899999999999999887654
No 137
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.98 E-value=4e-08 Score=85.13 Aligned_cols=168 Identities=11% Similarity=0.041 Sum_probs=104.0
Q ss_pred hHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCC----------
Q 023543 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHG---------- 170 (281)
Q Consensus 102 ~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~---------- 170 (281)
....|.+|+.... ..++++||..|||.|.-.+.+|..|.+|+++|+ +.+++.+.+ +|+...
T Consensus 28 pnp~L~~~~~~l~-----~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~---e~~~~~~~~~~~~~~~ 99 (226)
T PRK13256 28 PNEFLVKHFSKLN-----INDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFS---QNTINYEVIHGNDYKL 99 (226)
T ss_pred CCHHHHHHHHhcC-----CCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHH---HcCCCcceecccccce
Confidence 4566777765421 135789999999999999999999999999999 778887644 221110
Q ss_pred CCCCceEEEEEecCCCCCCCcCCCCCcEEEEcccc--CCCCcHHHHHHHHHHhhCCCcEEEEEEee-eC----h---hHH
Q 023543 171 DLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVI--YSEGAVGDLLDTLLQLCGTQTTIFLAGEL-RN----D---SVL 240 (281)
Q Consensus 171 ~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~i--y~~~~~~~ll~~l~~ll~~~g~~~l~~~~-r~----~---~~~ 240 (281)
....++.+...|+-+.....-...+||+|.-.-++ ..++.....++.+.++|+|||.+++..-. .. + -..
T Consensus 100 ~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf~v~~ 179 (226)
T PRK13256 100 YKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPYSVTQ 179 (226)
T ss_pred eccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCCcCCH
Confidence 01235666665554322111112579997765444 34777899999999999999976544321 11 0 012
Q ss_pred HHHHHHHhcCCeEEEEecC---CCCCCCCC-----CcEEEEEEEe
Q 023543 241 EYFLEAAMKDFVIGRVEQT---QWHPDYCS-----PRVVVYILVK 277 (281)
Q Consensus 241 ~~fl~~~~~~f~v~~i~~~---~~~~~~~~-----~~~~i~~~~~ 277 (281)
+.....+...|.++.+... ...+.+.. ..-.+|.+++
T Consensus 180 ~e~~~lf~~~~~i~~l~~~~~~~~~p~~~~~g~~~~~~~~~~l~~ 224 (226)
T PRK13256 180 AELIKNFSAKIKFELIDSKQRDNIPDYRKAEGMTEQYYTTYLRKK 224 (226)
T ss_pred HHHHHhccCCceEEEeeecccccCCcchhhcCcchhheeeEEEEe
Confidence 3334444567888888643 22222322 2345676665
No 138
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=3.2e-09 Score=99.83 Aligned_cols=143 Identities=17% Similarity=0.112 Sum_probs=112.5
Q ss_pred ceEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHH
Q 023543 78 HSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRL 156 (281)
Q Consensus 78 ~~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l 156 (281)
..++++-||+.|+..++ .++.+|-.++.+++. ...++.+||+.||||.+|+++|+...+|+++++ ++++
T Consensus 349 ~~ltF~iSp~AFFQ~Nt------~~aevLys~i~e~~~----l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV 418 (534)
T KOG2187|consen 349 LGLTFRISPGAFFQTNT------SAAEVLYSTIGEWAG----LPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAV 418 (534)
T ss_pred CCeEEEECCchhhccCc------HHHHHHHHHHHHHhC----CCCCcEEEEEeecCCceehhhhccccceeeeecChhhc
Confidence 35788889999887776 457788888887654 345689999999999999999999899999999 9999
Q ss_pred HHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCC--CCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 157 RLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQ--PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 157 ~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~--~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
+-|++|+..|++. ++.|....-++.++..+.+ +.-++|.-.|.-- ...+..+++.+..+-++.-.+|+++..
T Consensus 419 ~dA~~nA~~Ngis-----Na~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR-~Glh~~~ik~l~~~~~~~rlvyvSCn~ 492 (534)
T KOG2187|consen 419 EDAEKNAQINGIS-----NATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPR-KGLHMKVIKALRAYKNPRRLVYVSCNP 492 (534)
T ss_pred chhhhcchhcCcc-----ceeeeecchhhccchhcccCCCCCceEEEECCCc-ccccHHHHHHHHhccCccceEEEEcCH
Confidence 9999999999987 7888886545554443332 1345555555542 566788999999998899999999876
Q ss_pred eC
Q 023543 235 RN 236 (281)
Q Consensus 235 r~ 236 (281)
+.
T Consensus 493 ~t 494 (534)
T KOG2187|consen 493 HT 494 (534)
T ss_pred HH
Confidence 64
No 139
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.98 E-value=4.8e-09 Score=95.06 Aligned_cols=108 Identities=17% Similarity=0.120 Sum_probs=73.7
Q ss_pred CCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCC---
Q 023543 122 HGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQP--- 194 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~--- 194 (281)
++.+|||||||+|.....++.. +.+|+++|+ ++||+.+++++...... .++.....|..+..+ +..+
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~----~~v~~i~gD~~~~~~--~~~~~~~ 136 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQ----LEVHGICADFTQPLA--LPPEPAA 136 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCC----ceEEEEEEcccchhh--hhccccc
Confidence 5689999999999988877764 578999999 88999999988764311 234444444332111 1111
Q ss_pred -CCcEEEEccccCC--CCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 195 -LPDYVLGSDVIYS--EGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 195 -~fD~Iia~d~iy~--~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
+..+++...++++ +.....+++.+++.|+|||.+++.....
T Consensus 137 ~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 137 GRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred CCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence 2233333445665 4557789999999999999998876443
No 140
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.97 E-value=2.2e-09 Score=92.13 Aligned_cols=100 Identities=16% Similarity=0.214 Sum_probs=71.3
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHc-CC--EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALL-GA--QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~-g~--~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
..+|.+|||+|||||..+..++.+ |. +|+++|. ++.++.+++|+...+.. ++.+..-|-.. ..-...+
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-----nv~~~~gdg~~---g~~~~ap 141 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-----NVEVVVGDGSE---GWPEEAP 141 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-----SEEEEES-GGG---TTGGG-S
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-----ceeEEEcchhh---ccccCCC
Confidence 457899999999999999888875 43 6999999 88899999999998875 67777755221 1113468
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
||.|+..-.. +.+-..+.+.|++||++++-..
T Consensus 142 fD~I~v~~a~------~~ip~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 142 FDRIIVTAAV------PEIPEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp EEEEEESSBB------SS--HHHHHTEEEEEEEEEEES
T ss_pred cCEEEEeecc------chHHHHHHHhcCCCcEEEEEEc
Confidence 9999997766 2334556677899999876544
No 141
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.96 E-value=7.6e-10 Score=99.00 Aligned_cols=124 Identities=19% Similarity=0.091 Sum_probs=85.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.+|++||+|-|=||..|+.+++.|+ +|+.+|. ..+++.+++|+..|++. ..++.+...|.-+.....-...+||+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~---~~~~~~~~~Dvf~~l~~~~~~~~fD~ 198 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLD---LDRHRFIQGDVFKFLKRLKKGGRFDL 198 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-C---CTCEEEEES-HHHHHHHHHHTT-EEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC---ccceEEEecCHHHHHHHHhcCCCCCE
Confidence 5799999999999999999999998 6999999 77899999999999976 24677776553221111112468999
Q ss_pred EEEccccCC------CCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh
Q 023543 199 VLGSDVIYS------EGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM 248 (281)
Q Consensus 199 Iia~d~iy~------~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~ 248 (281)
||.-.+-|. ..++..++..+.++++|||.++++.....-+ .+.|++.+.
T Consensus 199 IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~-~~~l~~~~~ 253 (286)
T PF10672_consen 199 IILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHIS-PDFLLEAVA 253 (286)
T ss_dssp EEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS--HHHHHHHHH
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccC-HHHHHHHHH
Confidence 997444433 2457889999999999999987665544332 233555444
No 142
>PHA03411 putative methyltransferase; Provisional
Probab=98.93 E-value=2e-08 Score=88.96 Aligned_cols=100 Identities=14% Similarity=0.066 Sum_probs=71.6
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.+++|||+|||+|.+++.+++. +.+|+++|+ +.+++.+++|.. ++.+..-|.. +. .....||+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~----------~v~~v~~D~~---e~-~~~~kFDl 129 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP----------EAEWITSDVF---EF-ESNEKFDV 129 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc----------CCEEEECchh---hh-cccCCCcE
Confidence 3569999999999999888774 468999999 889999988732 2333333321 11 12357999
Q ss_pred EEEccccCCCCc--------------------HHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 199 VLGSDVIYSEGA--------------------VGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 199 Iia~d~iy~~~~--------------------~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
|+++...++... +.+++.....+|+|+|.+++++..+
T Consensus 130 IIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~ 186 (279)
T PHA03411 130 VISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGR 186 (279)
T ss_pred EEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecc
Confidence 999888775211 3567777788899999988876553
No 143
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.93 E-value=1.4e-08 Score=86.22 Aligned_cols=123 Identities=20% Similarity=0.191 Sum_probs=90.5
Q ss_pred CCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 122 HGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
+..-|||+|||+|+.|-.+...|..++++|+ +.||+.+.+.--+ + . +..-|-|.. ..+....||-+|
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~e-g-------d--lil~DMG~G--lpfrpGtFDg~I 117 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELE-G-------D--LILCDMGEG--LPFRPGTFDGVI 117 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhh-c-------C--eeeeecCCC--CCCCCCccceEE
Confidence 5678999999999999999999988999999 8999998862111 1 1 223333432 234457899999
Q ss_pred EccccCCC-----------CcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEE
Q 023543 201 GSDVIYSE-----------GAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRV 256 (281)
Q Consensus 201 a~d~iy~~-----------~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i 256 (281)
+-..+.+. .-+..|+.++..+|++++++++-+...++...+...+..+ .||.---+
T Consensus 118 SISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~GGlv 185 (270)
T KOG1541|consen 118 SISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFGGGLV 185 (270)
T ss_pred EeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhccCCcee
Confidence 85554431 1255678999999999999999998888888887877776 58864444
No 144
>PLN02476 O-methyltransferase
Probab=98.91 E-value=2.4e-08 Score=88.98 Aligned_cols=130 Identities=17% Similarity=0.153 Sum_probs=92.8
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC---cCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD---LIQ 193 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~---~~~ 193 (281)
.+.++|||+|+|+|..++.+|+. +.+|+.+|. ++.++.+++|++.+++. +++.+...+..+..+.. ..+
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~----~~I~li~GdA~e~L~~l~~~~~~ 192 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS----HKVNVKHGLAAESLKSMIQNGEG 192 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEEcCHHHHHHHHHhcccC
Confidence 57889999999999999999872 457999999 88999999999999886 56777765433221110 013
Q ss_pred CCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeCh------------hHHHHHHHHHhc--CCeEEEEe
Q 023543 194 PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRND------------SVLEYFLEAAMK--DFVIGRVE 257 (281)
Q Consensus 194 ~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~------------~~~~~fl~~~~~--~f~v~~i~ 257 (281)
.+||+|+.-. ....+...++.+.++|++||.+++-...... ..++.|.+.+.. .|....++
T Consensus 193 ~~FD~VFIDa---~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llP 267 (278)
T PLN02476 193 SSYDFAFVDA---DKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVP 267 (278)
T ss_pred CCCCEEEECC---CHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEE
Confidence 5899887532 2466788999999999999997765433221 125677777764 56665554
No 145
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=5.6e-08 Score=91.92 Aligned_cols=142 Identities=18% Similarity=0.153 Sum_probs=100.7
Q ss_pred hHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEE
Q 023543 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTE 180 (281)
Q Consensus 102 ~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~ 180 (281)
.+..|.++....++ ..++.+||||=||.|.+|+.+|+...+|+++|+ +++++.|++|++.|+.. ++.+..
T Consensus 277 ~~ekl~~~a~~~~~----~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~-----N~~f~~ 347 (432)
T COG2265 277 VAEKLYETALEWLE----LAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGID-----NVEFIA 347 (432)
T ss_pred HHHHHHHHHHHHHh----hcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCC-----cEEEEe
Confidence 35666777666543 245679999999999999999999999999999 89999999999999987 588887
Q ss_pred EecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEEec
Q 023543 181 LTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRVEQ 258 (281)
Q Consensus 181 l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i~~ 258 (281)
.+-.+..........+|.|+.--.= ...-+.+++.+.++ +|..++|+++. +.++.+-+..+. .++.++++.-
T Consensus 348 ~~ae~~~~~~~~~~~~d~VvvDPPR--~G~~~~~lk~l~~~-~p~~IvYVSCN---P~TlaRDl~~L~~~gy~i~~v~~ 420 (432)
T COG2265 348 GDAEEFTPAWWEGYKPDVVVVDPPR--AGADREVLKQLAKL-KPKRIVYVSCN---PATLARDLAILASTGYEIERVQP 420 (432)
T ss_pred CCHHHHhhhccccCCCCEEEECCCC--CCCCHHHHHHHHhc-CCCcEEEEeCC---HHHHHHHHHHHHhCCeEEEEEEE
Confidence 6543332222223467888752221 12235677777654 56677888764 666666666665 4777887753
No 146
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.91 E-value=8.4e-10 Score=92.86 Aligned_cols=110 Identities=22% Similarity=0.232 Sum_probs=79.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC-CcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ-DLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~-~~~~~~fD 197 (281)
++|.+||||-||||.+|+.+..+|+ +|+++|. +.++..+++|++..+.. .++.+...|....... ...+.+||
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~----~~~~v~~~d~~~~l~~~~~~~~~fD 116 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLE----DKIRVIKGDAFKFLLKLAKKGEKFD 116 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-G----GGEEEEESSHHHHHHHHHHCTS-EE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCC----cceeeeccCHHHHHHhhcccCCCce
Confidence 7899999999999999999988887 6999999 88999999999988765 3466555432111110 01357899
Q ss_pred EEEEccccCCCCc-HHHHHHHHH--HhhCCCcEEEEEEeee
Q 023543 198 YVLGSDVIYSEGA-VGDLLDTLL--QLCGTQTTIFLAGELR 235 (281)
Q Consensus 198 ~Iia~d~iy~~~~-~~~ll~~l~--~ll~~~g~~~l~~~~r 235 (281)
+| -.|+.|.... +..++..+. .+|+++|.+++-+..+
T Consensus 117 iI-flDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 117 II-FLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp EE-EE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred EE-EECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 76 5778888887 499999988 5889999888777655
No 147
>PRK00811 spermidine synthase; Provisional
Probab=98.91 E-value=2.1e-08 Score=90.11 Aligned_cols=129 Identities=8% Similarity=0.014 Sum_probs=84.3
Q ss_pred CCCeEEEECCCcCHHHHHHHHc-C-CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL-G-AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~-g-~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
++++||+||||.|.++..+++. + .+|+++|+ +++++.+++++...........++.+..-|....... ...+||+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~--~~~~yDv 153 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE--TENSFDV 153 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh--CCCcccE
Confidence 5689999999999998887775 4 47999999 8899999998765322110124566666442211111 3468999
Q ss_pred EEEc--cccCCCC---cHHHHHHHHHHhhCCCcEEEEEEe--eeChhHHHHHHHHHhcCCeE
Q 023543 199 VLGS--DVIYSEG---AVGDLLDTLLQLCGTQTTIFLAGE--LRNDSVLEYFLEAAMKDFVI 253 (281)
Q Consensus 199 Iia~--d~iy~~~---~~~~ll~~l~~ll~~~g~~~l~~~--~r~~~~~~~fl~~~~~~f~v 253 (281)
|++. |.. .+. ....+++.++++|+|+|++++-.. ......+....+.+.+-|..
T Consensus 154 Ii~D~~dp~-~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~~ 214 (283)
T PRK00811 154 IIVDSTDPV-GPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPI 214 (283)
T ss_pred EEECCCCCC-CchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCCC
Confidence 9973 222 111 136788999999999999776432 22334455566666666653
No 148
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.90 E-value=1.5e-08 Score=90.41 Aligned_cols=93 Identities=10% Similarity=0.046 Sum_probs=66.4
Q ss_pred CCCeEEEECCCcCHHHHHHHHc-----CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 122 HGKKIVELGSGCGLVGCIAALL-----GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~-----g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
.+.+|||+|||+|..+..++.. +.+|+++|+ +.+++.++++. .++.+...+.. +..+.+.+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----------~~~~~~~~d~~---~lp~~~~s 151 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----------PQVTFCVASSH---RLPFADQS 151 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----------CCCeEEEeecc---cCCCcCCc
Confidence 4578999999999988877753 237999999 88998887652 13444554432 22345678
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
||+|++... + ..++.+.+.|+|||.++++...
T Consensus 152 fD~I~~~~~---~----~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 152 LDAIIRIYA---P----CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred eeEEEEecC---C----CCHHHHHhhccCCCEEEEEeCC
Confidence 999997543 2 3457789999999999887653
No 149
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.90 E-value=1.3e-08 Score=85.14 Aligned_cols=98 Identities=15% Similarity=0.168 Sum_probs=69.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.+|.+|||||||.|.+--.+.. ++.+..++|+ ++.+..+. .+| +.+.+.|..+... .+++.+||+
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv----~rG--------v~Viq~Dld~gL~-~f~d~sFD~ 78 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACV----ARG--------VSVIQGDLDEGLA-DFPDQSFDY 78 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHH----HcC--------CCEEECCHHHhHh-hCCCCCccE
Confidence 4689999999999976555554 7888999999 55543332 233 3467766654432 367789999
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
||.+.++......+.+++.+.+. |..++++.+.
T Consensus 79 VIlsqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPN 111 (193)
T PF07021_consen 79 VILSQTLQAVRRPDEVLEEMLRV---GRRAIVSFPN 111 (193)
T ss_pred EehHhHHHhHhHHHHHHHHHHHh---cCeEEEEecC
Confidence 99999998777777777766554 5566677653
No 150
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.88 E-value=2.6e-08 Score=86.09 Aligned_cols=169 Identities=18% Similarity=0.099 Sum_probs=105.6
Q ss_pred hHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHH-HHHHHhhcC-C-----CCC
Q 023543 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLK-KNIENNLRH-G-----DLR 173 (281)
Q Consensus 102 ~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~-~N~~~n~~~-~-----~~~ 173 (281)
....|.+|+.+. ....+.+||..|||.|.-.+.+|..|.+|+|+|+ +.+++.+. +|....... . ...
T Consensus 22 ~~p~L~~~~~~l-----~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~ 96 (218)
T PF05724_consen 22 PNPALVEYLDSL-----ALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQA 96 (218)
T ss_dssp STHHHHHHHHHH-----TTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETT
T ss_pred CCHHHHHHHHhc-----CCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecC
Confidence 377888888762 1245679999999999999999999999999999 77888763 222211111 0 012
Q ss_pred CceEEEEEecCCCCCCCcC-CCCCcEEEEccccC--CCCcHHHHHHHHHHhhCCCcEEEEE-Eeee-----Ch--h-HHH
Q 023543 174 GSAVVTELTWGDDPDQDLI-QPLPDYVLGSDVIY--SEGAVGDLLDTLLQLCGTQTTIFLA-GELR-----ND--S-VLE 241 (281)
Q Consensus 174 ~~i~~~~l~w~~~~~~~~~-~~~fD~Iia~d~iy--~~~~~~~ll~~l~~ll~~~g~~~l~-~~~r-----~~--~-~~~ 241 (281)
+++.+..-|. +...-. ..+||+|.-..++. .++..+..++.+.++|+|+|.+++. .... .+ . ..+
T Consensus 97 ~~i~~~~gDf---F~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ 173 (218)
T PF05724_consen 97 GRITIYCGDF---FELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEE 173 (218)
T ss_dssp SSEEEEES-T---TTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HH
T ss_pred CceEEEEccc---ccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHH
Confidence 3556666443 332111 14799999765554 4788999999999999999994433 2211 01 1 223
Q ss_pred HHHHHHhcCCeEEEEecCCCCC--------CCCCCcEEEEEEEec
Q 023543 242 YFLEAAMKDFVIGRVEQTQWHP--------DYCSPRVVVYILVKK 278 (281)
Q Consensus 242 ~fl~~~~~~f~v~~i~~~~~~~--------~~~~~~~~i~~~~~k 278 (281)
...+.+..+|++..+......+ ....-.-.+|.++||
T Consensus 174 ev~~l~~~~f~i~~l~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~ 218 (218)
T PF05724_consen 174 EVRELFGPGFEIEELEEEDSIEEEPRFKSWGLSRFREKVYVLRRK 218 (218)
T ss_dssp HHHHHHTTTEEEEEEEEEE-TTT-HHHHCCT-SS-EEEEEEEEE-
T ss_pred HHHHHhcCCcEEEEEecccccccccchhhcCcCceeEEEEEEEcC
Confidence 3445555799988886543221 223345678888876
No 151
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.86 E-value=1.4e-08 Score=94.89 Aligned_cols=99 Identities=24% Similarity=0.270 Sum_probs=75.1
Q ss_pred CCeEEEECCCcCHHHHHHHHc-CC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 123 GKKIVELGSGCGLVGCIAALL-GA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~~-g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
+.+|||++||+|..|+.+++. ++ +|+++|+ +.+++.+++|++.|++. ++.+..-|....... ..+||+|
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-----~~~v~~~Da~~~l~~---~~~fD~V 129 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-----NEKVFNKDANALLHE---ERKFDVV 129 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-----ceEEEhhhHHHHHhh---cCCCCEE
Confidence 468999999999999999874 43 7999999 88999999999999875 344555443221110 3579998
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
+. |.. ....+++....+.++++|.++++..
T Consensus 130 ~l-DP~---Gs~~~~l~~al~~~~~~gilyvSAt 159 (382)
T PRK04338 130 DI-DPF---GSPAPFLDSAIRSVKRGGLLCVTAT 159 (382)
T ss_pred EE-CCC---CCcHHHHHHHHHHhcCCCEEEEEec
Confidence 87 653 4456788886677899999999843
No 152
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.83 E-value=1.3e-08 Score=92.53 Aligned_cols=83 Identities=13% Similarity=0.093 Sum_probs=59.7
Q ss_pred CCCeEEEECCCcCHHHHHHHH--cCCEEEEEec-hhHHHHHHHHHHHh-hcCCCCCCceEEEEE-ecCCCCCCC-cCCCC
Q 023543 122 HGKKIVELGSGCGLVGCIAAL--LGAQVILTDL-PDRLRLLKKNIENN-LRHGDLRGSAVVTEL-TWGDDPDQD-LIQPL 195 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~--~g~~V~~tD~-~~~l~~~~~N~~~n-~~~~~~~~~i~~~~l-~w~~~~~~~-~~~~~ 195 (281)
.+.+|||||||+|.+...++. .+.+++++|+ +.+++.|++|++.| ++. .++.+..- +-.+.+... .....
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~----~~I~~~~~~~~~~i~~~i~~~~~~ 189 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLN----GAIRLRLQKDSKAIFKGIIHKNER 189 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCc----CcEEEEEccchhhhhhcccccCCc
Confidence 457999999999977666554 4678999999 88999999999999 665 45665431 111111111 13468
Q ss_pred CcEEEEccccCCC
Q 023543 196 PDYVLGSDVIYSE 208 (281)
Q Consensus 196 fD~Iia~d~iy~~ 208 (281)
||+|+++-.+|..
T Consensus 190 fDlivcNPPf~~s 202 (321)
T PRK11727 190 FDATLCNPPFHAS 202 (321)
T ss_pred eEEEEeCCCCcCc
Confidence 9999999888764
No 153
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.83 E-value=3.4e-08 Score=84.92 Aligned_cols=129 Identities=16% Similarity=0.131 Sum_probs=93.8
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEE-EecCCCCCCCcCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTE-LTWGDDPDQDLIQPL 195 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~-l~w~~~~~~~~~~~~ 195 (281)
...++|||+|.+.|..++.+|.- ..+++.+|+ ++..+.|++|+++.+.. +++.... .++.+.... ..+++
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~----~~i~~~~~gdal~~l~~-~~~~~ 132 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD----DRIELLLGGDALDVLSR-LLDGS 132 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc----ceEEEEecCcHHHHHHh-ccCCC
Confidence 47899999999999999998872 347999999 89999999999999987 4566665 455443333 34689
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeCh----h--------H--HHHHHHHHhc--CCeEEEEe
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRND----S--------V--LEYFLEAAMK--DFVIGRVE 257 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~----~--------~--~~~fl~~~~~--~f~v~~i~ 257 (281)
||+|..= ......+.+++.+.++|+|||.+++-.-..+. . . ...|.+.... +|+...++
T Consensus 133 fDliFID---adK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~lP 207 (219)
T COG4122 133 FDLVFID---ADKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDTVLLP 207 (219)
T ss_pred ccEEEEe---CChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCceeEEEe
Confidence 9988751 12455688999999999999998765543331 1 1 4556666654 56665555
No 154
>PHA03412 putative methyltransferase; Provisional
Probab=98.82 E-value=1.5e-08 Score=87.89 Aligned_cols=93 Identities=14% Similarity=0.134 Sum_probs=65.4
Q ss_pred CCCeEEEECCCcCHHHHHHHHc-----CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 122 HGKKIVELGSGCGLVGCIAALL-----GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~-----g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
.+.+|||+|||+|.+++.+++. ..+|+++|+ +.+++.+++|+.. +.+...|.. ... .+.+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~----------~~~~~~D~~---~~~-~~~~ 114 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPE----------ATWINADAL---TTE-FDTL 114 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccC----------CEEEEcchh---ccc-ccCC
Confidence 4779999999999999988863 347999999 8899999988532 233332321 111 2357
Q ss_pred CcEEEEccccCCC------------CcHHHHHHHHHHhhCCCcEE
Q 023543 196 PDYVLGSDVIYSE------------GAVGDLLDTLLQLCGTQTTI 228 (281)
Q Consensus 196 fD~Iia~d~iy~~------------~~~~~ll~~l~~ll~~~g~~ 228 (281)
||+||++-..+.. ..+..+++...+++++|+.+
T Consensus 115 FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~I 159 (241)
T PHA03412 115 FDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFI 159 (241)
T ss_pred ccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEE
Confidence 8999987776631 22566888888877777753
No 155
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.81 E-value=1.6e-08 Score=85.65 Aligned_cols=98 Identities=17% Similarity=0.138 Sum_probs=76.8
Q ss_pred CCCeEEEECCCcCHHHHHHHH--cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAAL--LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~--~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.-.+|.|||||+|...-.+++ .++.++++|- ++|++.|+... .++.+...|..+. -+.++.|+
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl----------p~~~f~~aDl~~w----~p~~~~dl 95 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL----------PDATFEEADLRTW----KPEQPTDL 95 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC----------CCCceecccHhhc----CCCCccch
Confidence 456999999999998888887 4778999999 89998875432 2344544433222 13468899
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
+.++.++++-.++..++..+...|.|||.+-+-.+
T Consensus 96 lfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmP 130 (257)
T COG4106 96 LFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMP 130 (257)
T ss_pred hhhhhhhhhccccHHHHHHHHHhhCCCceEEEECC
Confidence 99999999999999999999999999998766544
No 156
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.81 E-value=3.4e-08 Score=83.72 Aligned_cols=90 Identities=16% Similarity=0.199 Sum_probs=65.3
Q ss_pred CCCeEEEECCCcCHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 122 HGKKIVELGSGCGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
++++|||+|||+|.++..++. .+.+++++|+ +++++.++.+ ++.+...+..+... .+.+.+||+|
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~------------~~~~~~~d~~~~l~-~~~~~sfD~V 79 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR------------GVNVIQGDLDEGLE-AFPDKSFDYV 79 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc------------CCeEEEEEhhhccc-ccCCCCcCEE
Confidence 567999999999998888765 4567999999 7787776531 13344444432111 1345689999
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCC
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGT 224 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~ 224 (281)
+++.++++..+...+++.+.+.+++
T Consensus 80 i~~~~l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 80 ILSQTLQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred EEhhHhHcCcCHHHHHHHHHHhCCe
Confidence 9999999988888888888776553
No 157
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.79 E-value=4.9e-08 Score=81.63 Aligned_cols=111 Identities=23% Similarity=0.243 Sum_probs=79.9
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.+.|.++|||-||+|.+|+.++.+|+ +++++|. ..++..+++|++.-+.. .++.+..-|-.......-..++||
T Consensus 41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~----~~~~~~~~da~~~L~~~~~~~~FD 116 (187)
T COG0742 41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLE----GEARVLRNDALRALKQLGTREPFD 116 (187)
T ss_pred ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCc----cceEEEeecHHHHHHhcCCCCccc
Confidence 37899999999999999999999988 5999999 78999999999988754 345555543221111111123699
Q ss_pred EEEEccccCCCCcHHHHHHHHH----HhhCCCcEEEEEEeee
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLL----QLCGTQTTIFLAGELR 235 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~----~ll~~~g~~~l~~~~r 235 (281)
+|. .|..|.....+.....+. ..|+|++.+++-....
T Consensus 117 lVf-lDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 117 LVF-LDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred EEE-eCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 655 788888777755555444 5689999987766544
No 158
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.78 E-value=1.4e-08 Score=86.99 Aligned_cols=130 Identities=15% Similarity=0.117 Sum_probs=93.0
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcC---C
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLI---Q 193 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~---~ 193 (281)
.+.++|||||||+|..++.+|.. +++|+.+|. ++..+.+++|++..+.. +++++...+..+..+.... .
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~----~~I~~~~gda~~~l~~l~~~~~~ 119 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD----DRIEVIEGDALEVLPELANDGEE 119 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG----GGEEEEES-HHHHHHHHHHTTTT
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC----CcEEEEEeccHhhHHHHHhccCC
Confidence 57789999999999999999972 579999999 88899999999999876 5788887554321111111 2
Q ss_pred CCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeC----------h--hHHHHHHHHHhc--CCeEEEEe
Q 023543 194 PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRN----------D--SVLEYFLEAAMK--DFVIGRVE 257 (281)
Q Consensus 194 ~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~----------~--~~~~~fl~~~~~--~f~v~~i~ 257 (281)
.+||+|..-. ....+...++.+.++|++||.+++-..... + ..++.|.+.+.. .|....++
T Consensus 120 ~~fD~VFiDa---~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~llp 194 (205)
T PF01596_consen 120 GQFDFVFIDA---DKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLLP 194 (205)
T ss_dssp TSEEEEEEES---TGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEEC
T ss_pred CceeEEEEcc---cccchhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEEE
Confidence 4799887532 356678888888999999998876643321 1 125567777764 56665554
No 159
>PRK04148 hypothetical protein; Provisional
Probab=98.76 E-value=2.8e-08 Score=78.91 Aligned_cols=99 Identities=24% Similarity=0.212 Sum_probs=64.1
Q ss_pred HHHHHHhhhhccCccccCCCeEEEECCCcCH-HHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEe
Q 023543 105 VLGKFLEHAVDSGMLLLHGKKIVELGSGCGL-VGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELT 182 (281)
Q Consensus 105 ~la~~l~~~~~~~~~~~~~~~VLELGcGtG~-~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~ 182 (281)
.+++||.++.. ..++++|||+|||+|. ++..+++.|.+|+++|+ +.+++.++.+ + +.+..-|
T Consensus 3 ~i~~~l~~~~~----~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~----~--------~~~v~dD 66 (134)
T PRK04148 3 TIAEFIAENYE----KGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL----G--------LNAFVDD 66 (134)
T ss_pred HHHHHHHHhcc----cccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh----C--------CeEEECc
Confidence 36788877532 2356899999999996 89999999999999999 7777777654 2 2344433
Q ss_pred cCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcE
Q 023543 183 WGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTT 227 (281)
Q Consensus 183 w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~ 227 (281)
+. ++.+++--++|++|...-.+.+...+.++.+.-+.
T Consensus 67 lf--------~p~~~~y~~a~liysirpp~el~~~~~~la~~~~~ 103 (134)
T PRK04148 67 LF--------NPNLEIYKNAKLIYSIRPPRDLQPFILELAKKINV 103 (134)
T ss_pred CC--------CCCHHHHhcCCEEEEeCCCHHHHHHHHHHHHHcCC
Confidence 32 23333333445555543346666666666655443
No 160
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.73 E-value=1.4e-07 Score=81.20 Aligned_cols=113 Identities=17% Similarity=0.276 Sum_probs=76.5
Q ss_pred ccCCCeEEEECCCcCHHHHHHHH-cCCE-EEEEec-hhHHHHHHHHHHHhhcC---CC----------------------
Q 023543 120 LLHGKKIVELGSGCGLVGCIAAL-LGAQ-VILTDL-PDRLRLLKKNIENNLRH---GD---------------------- 171 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~-~g~~-V~~tD~-~~~l~~~~~N~~~n~~~---~~---------------------- 171 (281)
.+.++.+||+||-+|.+++.+|+ .|++ |+++|+ +..+..|++|++.-.-. ..
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 57889999999999999999997 6765 999999 66789999987643111 00
Q ss_pred -----CCCceEEEEEec--C-CCCCCCcCCCCCcEEEEccccCC------CCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 172 -----LRGSAVVTELTW--G-DDPDQDLIQPLPDYVLGSDVIYS------EGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 172 -----~~~~i~~~~l~w--~-~~~~~~~~~~~fD~Iia~d~iy~------~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
...++.+..-.. . +++ ..+..+.||+|+|-.+.-+ .+-+..+++.+.++|.|||++++--+
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~df-l~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQ 210 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDF-LDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQ 210 (288)
T ss_pred cccccCCcchhcccccEEEecchh-hhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCC
Confidence 000010000000 0 000 0134578999999666433 45589999999999999999887754
No 161
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.73 E-value=3.7e-07 Score=76.82 Aligned_cols=121 Identities=20% Similarity=0.166 Sum_probs=84.9
Q ss_pred CeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 124 KKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
.+++|+|+|.|.+|+.+|.. ..+|+++|- ..-+..++.-+..-++. ++.+...+.++ .....+||+|+
T Consensus 50 ~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-----nv~v~~~R~E~----~~~~~~fd~v~ 120 (184)
T PF02527_consen 50 KKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-----NVEVINGRAEE----PEYRESFDVVT 120 (184)
T ss_dssp SEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-----SEEEEES-HHH----TTTTT-EEEEE
T ss_pred ceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-----CEEEEEeeecc----cccCCCccEEE
Confidence 38999999999999998864 457999999 77788888777777775 68888866554 23457899999
Q ss_pred EccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEEe
Q 023543 201 GSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRVE 257 (281)
Q Consensus 201 a~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i~ 257 (281)
+-.+- .+..++..+..+++++|.+++--.....+.++..-..+. .+.....++
T Consensus 121 aRAv~----~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~~v~ 174 (184)
T PF02527_consen 121 ARAVA----PLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVLSVP 174 (184)
T ss_dssp EESSS----SHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEEEEE
T ss_pred eehhc----CHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEeeec
Confidence 97663 568899999999999998765543344444444444444 245555554
No 162
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=2.3e-08 Score=79.51 Aligned_cols=76 Identities=22% Similarity=0.340 Sum_probs=57.1
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.++|+.++|||||||.+++.++..+.+ |+|+|+ +++++..++|+++-.+. +.+.+.+.. +..+.+.-||
T Consensus 46 diEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq------idlLqcdil---dle~~~g~fD 116 (185)
T KOG3420|consen 46 DIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ------IDLLQCDIL---DLELKGGIFD 116 (185)
T ss_pred cccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh------hheeeeecc---chhccCCeEe
Confidence 589999999999999999999988886 999999 99999999999987765 334443332 2223345566
Q ss_pred EEEEccc
Q 023543 198 YVLGSDV 204 (281)
Q Consensus 198 ~Iia~d~ 204 (281)
.++-+..
T Consensus 117 taviNpp 123 (185)
T KOG3420|consen 117 TAVINPP 123 (185)
T ss_pred eEEecCC
Confidence 6555444
No 163
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.72 E-value=3.9e-07 Score=82.80 Aligned_cols=139 Identities=19% Similarity=0.138 Sum_probs=97.8
Q ss_pred HHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEE
Q 023543 103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTEL 181 (281)
Q Consensus 103 s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l 181 (281)
...||+.+.+.. ...+|..|||==||||-+.+.+...|++|+|+|+ ..|++-++.|++..++. ...+...
T Consensus 182 ~P~lAR~mVNLa----~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~-----~~~~~~~ 252 (347)
T COG1041 182 DPRLARAMVNLA----RVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIE-----DYPVLKV 252 (347)
T ss_pred CHHHHHHHHHHh----ccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcC-----ceeEEEe
Confidence 345666665432 2467889999999999999999999999999999 78999999999998754 2322222
Q ss_pred ecCCCCCCCcCCCCCcEEEEccccCCC----------CcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhcCC
Q 023543 182 TWGDDPDQDLIQPLPDYVLGSDVIYSE----------GAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDF 251 (281)
Q Consensus 182 ~w~~~~~~~~~~~~fD~Iia~d~iy~~----------~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f 251 (281)
.+.....+.+..+|- |++|..|-. +.+..+++++.+.|++||.+.+..+.... -.....+|
T Consensus 253 --~Da~~lpl~~~~vda-IatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~~------~~~~~~~f 323 (347)
T COG1041 253 --LDATNLPLRDNSVDA-IATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDPR------HELEELGF 323 (347)
T ss_pred --cccccCCCCCCccce-EEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcch------hhHhhcCc
Confidence 122222344456885 557777763 23788999999999999998888772221 12233588
Q ss_pred eEEEEecC
Q 023543 252 VIGRVEQT 259 (281)
Q Consensus 252 ~v~~i~~~ 259 (281)
++...-..
T Consensus 324 ~v~~~~~~ 331 (347)
T COG1041 324 KVLGRFTM 331 (347)
T ss_pred eEEEEEEE
Confidence 87776443
No 164
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.71 E-value=2.2e-07 Score=82.99 Aligned_cols=129 Identities=12% Similarity=0.008 Sum_probs=80.8
Q ss_pred CCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.+++||+||||+|.++..+++.. .+|+++|+ +++++.+++++....... ...++.+..-|...... ....+||+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~-~~~~v~i~~~D~~~~l~--~~~~~yDv 148 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSY-DDPRVDLQIDDGFKFLA--DTENTFDV 148 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccc-cCCceEEEECchHHHHH--hCCCCccE
Confidence 45699999999998887776654 47999999 788999999875532110 11345554422111000 11468999
Q ss_pred EEEccc--cCCCCc--HHHHHHHHHHhhCCCcEEEEEEee--eChhHHHHHHHHHhcCCeE
Q 023543 199 VLGSDV--IYSEGA--VGDLLDTLLQLCGTQTTIFLAGEL--RNDSVLEYFLEAAMKDFVI 253 (281)
Q Consensus 199 Iia~d~--iy~~~~--~~~ll~~l~~ll~~~g~~~l~~~~--r~~~~~~~fl~~~~~~f~v 253 (281)
|+..-. ...... ...+++.++++|+|||++++.... .....+......+.+.|..
T Consensus 149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~ 209 (270)
T TIGR00417 149 IIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPI 209 (270)
T ss_pred EEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCC
Confidence 997332 111112 467889999999999998775322 2234445555556665653
No 165
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=4.6e-07 Score=78.80 Aligned_cols=114 Identities=14% Similarity=0.114 Sum_probs=83.0
Q ss_pred ccCCCeEEEECCCcCHHHHHHHH-cC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAAL-LG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~-~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
..+|.+|||.|.|+|.++.++|. .| .+|+..|+ ++..+.|++|++..++. +++....-|. .+... ...
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~----d~v~~~~~Dv---~~~~~-~~~ 163 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG----DRVTLKLGDV---REGID-EED 163 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc----cceEEEeccc---ccccc-ccc
Confidence 46899999999999999999996 44 47999999 89999999999998765 3455555332 22222 238
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM 248 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~ 248 (281)
||.|+. +..+....++.+.++|+|||.+.+-.+.-++ .++-.+.++
T Consensus 164 vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQ--v~kt~~~l~ 209 (256)
T COG2519 164 VDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQ--VEKTVEALR 209 (256)
T ss_pred cCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcCCHHH--HHHHHHHHH
Confidence 897663 3456788999999999999987666554333 233444444
No 166
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.71 E-value=1.5e-07 Score=82.44 Aligned_cols=97 Identities=18% Similarity=0.182 Sum_probs=76.8
Q ss_pred CCCeEEEECCCcCHHHHHHHH--cCCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 122 HGKKIVELGSGCGLVGCIAAL--LGAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~--~g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
..++|||||+|+|..++.+++ .+.+++..|.|++++.+++ . +++.+...|+.+ .+ |.+|++
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~-------~----~rv~~~~gd~f~----~~--P~~D~~ 162 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE-------A----DRVEFVPGDFFD----PL--PVADVY 162 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH-------T----TTEEEEES-TTT----CC--SSESEE
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc-------c----cccccccccHHh----hh--ccccce
Confidence 457999999999999988887 4568999999999988887 1 578888866542 22 239999
Q ss_pred EEccccCCC--CcHHHHHHHHHHhhCCC--cEEEEEEeee
Q 023543 200 LGSDVIYSE--GAVGDLLDTLLQLCGTQ--TTIFLAGELR 235 (281)
Q Consensus 200 ia~d~iy~~--~~~~~ll~~l~~ll~~~--g~~~l~~~~r 235 (281)
+.+.++|+. +....+++.+++.|+|| |+++|.....
T Consensus 163 ~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~ 202 (241)
T PF00891_consen 163 LLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVL 202 (241)
T ss_dssp EEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEE
T ss_pred eeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeecc
Confidence 999999884 55788999999999988 9999988764
No 167
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.71 E-value=3.6e-08 Score=85.67 Aligned_cols=112 Identities=22% Similarity=0.166 Sum_probs=72.3
Q ss_pred eecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHH-HHHHHHHhhcCCCCCC
Q 023543 98 VMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRL-LKKNIENNLRHGDLRG 174 (281)
Q Consensus 98 ~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~-~~~N~~~n~~~~~~~~ 174 (281)
.+..++..|...+... ...+++++|||+|||||.++..+++.|+ +|+++|+ +.++.. ++.|..-.... ..
T Consensus 55 ~vsr~~~kL~~~l~~~----~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~---~~ 127 (228)
T TIGR00478 55 FVSRGGEKLKEALEEF----NIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLE---RT 127 (228)
T ss_pred hhhhhHHHHHHHHHhc----CCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEee---cC
Confidence 3466777788777753 2346899999999999999999999976 6999999 656543 44432211011 11
Q ss_pred ceEEEEEecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 023543 175 SAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFL 230 (281)
Q Consensus 175 ~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l 230 (281)
+++ .++|.+.. ..+ ..+|+++.+-.. ++..+.++|++ |.+++
T Consensus 128 ni~--~~~~~~~~-~d~--~~~DvsfiS~~~--------~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 128 NIR--YVTPADIF-PDF--ATFDVSFISLIS--------ILPELDLLLNP-NDLTL 169 (228)
T ss_pred Ccc--cCCHhHcC-CCc--eeeeEEEeehHh--------HHHHHHHHhCc-CeEEE
Confidence 232 45565432 111 356777666443 67788888888 65443
No 168
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.70 E-value=1.4e-07 Score=89.69 Aligned_cols=100 Identities=15% Similarity=0.196 Sum_probs=70.2
Q ss_pred CCCeEEEECCCcCHHHHHHHHcC------CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCC
Q 023543 122 HGKKIVELGSGCGLVGCIAALLG------AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQP 194 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g------~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~ 194 (281)
+++.|||+|||+|.++..+++.+ .+|++++- +.+...+++.+..|+.. ++|.+..-+-.+. -...
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~----~~V~vi~~d~r~v----~lpe 257 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWG----DKVTVIHGDMREV----ELPE 257 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTT----TTEEEEES-TTTS----CHSS
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCC----CeEEEEeCcccCC----CCCC
Confidence 57899999999999998877754 37999999 66777777777888775 5788888543322 1235
Q ss_pred CCcEEEEccc--cCCCCcHHHHHHHHHHhhCCCcEEE
Q 023543 195 LPDYVLGSDV--IYSEGAVGDLLDTLLQLCGTQTTIF 229 (281)
Q Consensus 195 ~fD~Iia~d~--iy~~~~~~~ll~~l~~ll~~~g~~~ 229 (281)
++|+||+--+ +-..+..+..+....+.|+|+|+++
T Consensus 258 kvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 258 KVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 8999998222 2223466778899999999998754
No 169
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.68 E-value=5.3e-08 Score=82.94 Aligned_cols=96 Identities=23% Similarity=0.166 Sum_probs=69.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHH--cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAAL--LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~--~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.+|.+|||+.||.|..++.+|+ .+..|++.|+ |++++.+++|++.|++. +++.+...|..+... ...||
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~----~~i~~~~~D~~~~~~----~~~~d 171 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVE----NRIEVINGDAREFLP----EGKFD 171 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-T----TTEEEEES-GGG-------TT-EE
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCC----CeEEEEcCCHHHhcC----ccccC
Confidence 4688999999999999999998 6678999999 89999999999999887 578788876543222 56789
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEE
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTI 228 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~ 228 (281)
-|+...+- ....++..+..+++++|.+
T Consensus 172 rvim~lp~----~~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 172 RVIMNLPE----SSLEFLDAALSLLKEGGII 198 (200)
T ss_dssp EEEE--TS----SGGGGHHHHHHHEEEEEEE
T ss_pred EEEECChH----HHHHHHHHHHHHhcCCcEE
Confidence 88886543 2345777788888888865
No 170
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.68 E-value=5.4e-07 Score=77.32 Aligned_cols=124 Identities=17% Similarity=0.146 Sum_probs=85.9
Q ss_pred CCeEEEECCCcCHHHHHHHH--cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC-CcE
Q 023543 123 GKKIVELGSGCGLVGCIAAL--LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL-PDY 198 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~--~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~-fD~ 198 (281)
+++++|+|+|.|.+|+.+|. ...+|+.+|- ..-+..++.-..+-++. ++++..-..++.. ...+ ||+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~-----nv~i~~~RaE~~~----~~~~~~D~ 138 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE-----NVEIVHGRAEEFG----QEKKQYDV 138 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC-----CeEEehhhHhhcc----cccccCcE
Confidence 68999999999999999885 3456999999 77788888777777665 6777765433211 1134 999
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEEEecC
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGRVEQT 259 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~i~~~ 259 (281)
|.+-.+ ..+..++..+..++++||.++........+.....-..+. .+|.+..+..-
T Consensus 139 vtsRAv----a~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~ 196 (215)
T COG0357 139 VTSRAV----ASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVFSL 196 (215)
T ss_pred EEeehc----cchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEEEEe
Confidence 998655 3568899999999999998654333333333333433333 37777777543
No 171
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.68 E-value=6.3e-08 Score=83.26 Aligned_cols=113 Identities=16% Similarity=0.117 Sum_probs=80.6
Q ss_pred eEEEECCCcCHHHHHHHHc----CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCC-CCCcCCCCCcE
Q 023543 125 KIVELGSGCGLVGCIAALL----GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDP-DQDLIQPLPDY 198 (281)
Q Consensus 125 ~VLELGcGtG~~~i~~a~~----g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~-~~~~~~~~fD~ 198 (281)
+|||+|||.|.....+.+- +-+|.+.|. +.++++.++|...+... +.....|...+. .......++|+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~------~~afv~Dlt~~~~~~~~~~~svD~ 147 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESR------VEAFVWDLTSPSLKEPPEEGSVDI 147 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhh------hcccceeccchhccCCCCcCccce
Confidence 7999999999776666552 247999999 89999999998776532 222222222211 22234467899
Q ss_pred EEEccccC--CCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHH
Q 023543 199 VLGSDVIY--SEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYF 243 (281)
Q Consensus 199 Iia~d~iy--~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~f 243 (281)
|++--++- .+...+..++.+.++|||||.+++.+..+++-...+|
T Consensus 148 it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF 194 (264)
T KOG2361|consen 148 ITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRF 194 (264)
T ss_pred EEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhc
Confidence 99866654 3677899999999999999999999877665443333
No 172
>PRK03612 spermidine synthase; Provisional
Probab=98.62 E-value=4.6e-07 Score=88.08 Aligned_cols=132 Identities=13% Similarity=0.001 Sum_probs=83.6
Q ss_pred CCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCC--CCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 122 HGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHG--DLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~--~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
++++|||+|||+|.....+++.+ .+|+++|+ +++++.+++|...+.... -...++++..-|-.+... ....+|
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~--~~~~~f 374 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLR--KLAEKF 374 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHH--hCCCCC
Confidence 56899999999999988887764 48999999 889999998643222110 012456666544221111 123689
Q ss_pred cEEEEccccCCCC-----cHHHHHHHHHHhhCCCcEEEEEEe--eeChhHHHHHHHHHhc-CCeEEE
Q 023543 197 DYVLGSDVIYSEG-----AVGDLLDTLLQLCGTQTTIFLAGE--LRNDSVLEYFLEAAMK-DFVIGR 255 (281)
Q Consensus 197 D~Iia~d~iy~~~-----~~~~ll~~l~~ll~~~g~~~l~~~--~r~~~~~~~fl~~~~~-~f~v~~ 255 (281)
|+|++.-.-.... .-+.+++.++++|+|+|.+++... ....+.+....+.+++ +|.+..
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~~ 441 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLATTP 441 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEEEE
Confidence 9999842211111 124688999999999999877542 2223444556666665 684443
No 173
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.62 E-value=5.2e-08 Score=83.81 Aligned_cols=97 Identities=14% Similarity=0.102 Sum_probs=66.4
Q ss_pred CeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEc
Q 023543 124 KKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGS 202 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~ 202 (281)
+.++|+|||+|..++.+|..-.+|++||+ +.||+.+++--...-... ...... .+..+..-...+.|+|+++
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t----~~~ms~---~~~v~L~g~e~SVDlI~~A 107 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHT----PSTMSS---DEMVDLLGGEESVDLITAA 107 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccC----Cccccc---cccccccCCCcceeeehhh
Confidence 48999999999888888888678999999 789998875322211110 000110 0111111125789999999
Q ss_pred cccCCCCcHHHHHHHHHHhhCCCcEE
Q 023543 203 DVIYSEGAVGDLLDTLLQLCGTQTTI 228 (281)
Q Consensus 203 d~iy~~~~~~~ll~~l~~ll~~~g~~ 228 (281)
.++|+ -+++.+.+.+.++|++.|-+
T Consensus 108 qa~HW-Fdle~fy~~~~rvLRk~Gg~ 132 (261)
T KOG3010|consen 108 QAVHW-FDLERFYKEAYRVLRKDGGL 132 (261)
T ss_pred hhHHh-hchHHHHHHHHHHcCCCCCE
Confidence 99865 56789999999999887733
No 174
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.61 E-value=2.4e-07 Score=81.47 Aligned_cols=104 Identities=15% Similarity=0.094 Sum_probs=78.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCc----C
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL---GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDL----I 192 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~----~ 192 (281)
.+.++|||||+++|+.++.+|.. +.+|+.+|. ++..+.|++|++..++. +++.+...+..+..+... .
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~----~~I~~~~G~a~e~L~~l~~~~~~ 153 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA----HKIDFREGPALPVLDQMIEDGKY 153 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC----CceEEEeccHHHHHHHHHhcccc
Confidence 56789999999999999988862 568999999 88899999999998876 578777755433221111 1
Q ss_pred CCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 193 QPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 193 ~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
..+||+|..- . +...+...++.+.++|++||.+++-
T Consensus 154 ~~~fD~iFiD-a--dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 154 HGTFDFIFVD-A--DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred CCcccEEEec-C--CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 2589988752 1 2555678888888999999997654
No 175
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.61 E-value=1.4e-07 Score=87.71 Aligned_cols=99 Identities=16% Similarity=0.171 Sum_probs=76.2
Q ss_pred CeEEEECCCcCHHHHHHHHc--CC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 124 KKIVELGSGCGLVGCIAALL--GA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~~--g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
-+|||+.||+|..|+.+++. |+ +|+++|+ +++++.+++|++.|+.. ++.+...|....... ...+||+|
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-----~~~v~~~Da~~~l~~--~~~~fDvI 118 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-----NIEVPNEDAANVLRY--RNRKFHVI 118 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-----cEEEEchhHHHHHHH--hCCCCCEE
Confidence 58999999999999999986 54 6999999 89999999999999764 466666543322111 13579987
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
.. |. |. ...+++..+.+.++++|.++++..
T Consensus 119 dl-DP-fG--s~~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 119 DI-DP-FG--TPAPFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred Ee-CC-CC--CcHHHHHHHHHhcccCCEEEEEec
Confidence 76 77 43 335788888889999999998854
No 176
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.57 E-value=4.5e-07 Score=76.92 Aligned_cols=107 Identities=17% Similarity=0.099 Sum_probs=77.6
Q ss_pred eEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC-----CcCCCCC
Q 023543 125 KIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ-----DLIQPLP 196 (281)
Q Consensus 125 ~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~-----~~~~~~f 196 (281)
+|||||||||--+..+|.. .....-+|. +..+...+..+...+... -.....+|....... .....+|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~N----v~~P~~lDv~~~~w~~~~~~~~~~~~~ 103 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPN----VRPPLALDVSAPPWPWELPAPLSPESF 103 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcc----cCCCeEeecCCCCCccccccccCCCCc
Confidence 6999999999888888874 346889999 556677777777766541 111234443332111 1234689
Q ss_pred cEEEEccccCC--CCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 197 DYVLGSDVIYS--EGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 197 D~Iia~d~iy~--~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
|.|++..++|- .+..+.|++...++|++||.+++.++..
T Consensus 104 D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~ 144 (204)
T PF06080_consen 104 DAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFN 144 (204)
T ss_pred ceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcc
Confidence 99999999876 5678999999999999999998887654
No 177
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.57 E-value=1.9e-06 Score=77.84 Aligned_cols=79 Identities=23% Similarity=0.226 Sum_probs=60.2
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||+|||+|.++..++..+.+|+++|+ +.+++.+++|+..++.. .++.+..-|+.+ . ..++||+|
T Consensus 35 ~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~----~~v~ii~~Dal~---~--~~~~~d~V 105 (294)
T PTZ00338 35 KPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLA----SKLEVIEGDALK---T--EFPYFDVC 105 (294)
T ss_pred CCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCC----CcEEEEECCHhh---h--cccccCEE
Confidence 46789999999999999999988889999999 88999999998876533 367777755432 1 12468988
Q ss_pred EEccccCCCC
Q 023543 200 LGSDVIYSEG 209 (281)
Q Consensus 200 ia~d~iy~~~ 209 (281)
+++ ..|+..
T Consensus 106 vaN-lPY~Is 114 (294)
T PTZ00338 106 VAN-VPYQIS 114 (294)
T ss_pred Eec-CCcccC
Confidence 865 555533
No 178
>PRK01581 speE spermidine synthase; Validated
Probab=98.54 E-value=1.2e-06 Score=80.64 Aligned_cols=131 Identities=13% Similarity=0.041 Sum_probs=78.8
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHH---HhhcCCCCCCceEEEEEecCCCCCCCcCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIE---NNLRHGDLRGSAVVTELTWGDDPDQDLIQP 194 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~---~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~ 194 (281)
...++||+||||+|.....+.+.. .+|+++|+ +++++.+++.-. .|.... ...++++..-|..+... ....
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~-~DpRV~vvi~Da~~fL~--~~~~ 225 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAF-FDNRVNVHVCDAKEFLS--SPSS 225 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccC-CCCceEEEECcHHHHHH--hcCC
Confidence 456799999999998777666644 47999999 889999996311 111110 12466665544322111 1246
Q ss_pred CCcEEEEccccCCC-------CcHHHHHHHHHHhhCCCcEEEEEEeee--ChhHHHHHHHHHhc-CCeEEEE
Q 023543 195 LPDYVLGSDVIYSE-------GAVGDLLDTLLQLCGTQTTIFLAGELR--NDSVLEYFLEAAMK-DFVIGRV 256 (281)
Q Consensus 195 ~fD~Iia~d~iy~~-------~~~~~ll~~l~~ll~~~g~~~l~~~~r--~~~~~~~fl~~~~~-~f~v~~i 256 (281)
+||+|+.- +. ++ -.-..+++.+++.|+|||++++-.... ....+..+...+.+ +|.+...
T Consensus 226 ~YDVIIvD-l~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y 295 (374)
T PRK01581 226 LYDVIIID-FP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSY 295 (374)
T ss_pred CccEEEEc-CC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEE
Confidence 79999964 21 11 112678999999999999976543211 12233334555554 5554443
No 179
>PLN02366 spermidine synthase
Probab=98.51 E-value=1.6e-06 Score=78.69 Aligned_cols=128 Identities=12% Similarity=0.009 Sum_probs=83.8
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.+.++||+||||.|.+...+++.. .+|+++|+ +.+++.+++.....+... ...++++..-|-..... ...+.+||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~-~dpRv~vi~~Da~~~l~-~~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGF-DDPRVNLHIGDGVEFLK-NAPEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhcccc-CCCceEEEEChHHHHHh-hccCCCCC
Confidence 357899999999999888888753 47999999 778999999875432110 12466666644211111 11245799
Q ss_pred EEEEccccCC--CC---cHHHHHHHHHHhhCCCcEEEEEEe--eeChhHHHHHHHHHhcCC
Q 023543 198 YVLGSDVIYS--EG---AVGDLLDTLLQLCGTQTTIFLAGE--LRNDSVLEYFLEAAMKDF 251 (281)
Q Consensus 198 ~Iia~d~iy~--~~---~~~~ll~~l~~ll~~~g~~~l~~~--~r~~~~~~~fl~~~~~~f 251 (281)
+|+. |..-. +. .-..+++.++++|+|+|+++.-.. ......+....+.+.+.|
T Consensus 168 vIi~-D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F 227 (308)
T PLN02366 168 AIIV-DSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETF 227 (308)
T ss_pred EEEE-cCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHC
Confidence 9997 32211 11 135789999999999999754221 233455666777777777
No 180
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.51 E-value=3.4e-06 Score=77.09 Aligned_cols=107 Identities=20% Similarity=0.193 Sum_probs=81.2
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
..|.+|||.-||.|.+++.+|+.|+. |+++|+ |.+++.+++|+..|+.. +.+.....|-.+.... -..+|-
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~----~~v~~i~gD~rev~~~---~~~aDr 259 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVE----GRVEPILGDAREVAPE---LGVADR 259 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCcc----ceeeEEeccHHHhhhc---cccCCE
Confidence 46999999999999999999999886 999999 99999999999999987 4566666553322111 166899
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChh
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDS 238 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~ 238 (281)
|+..-+- ....++....++++++|.+.+....+...
T Consensus 260 Iim~~p~----~a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 260 IIMGLPK----SAHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred EEeCCCC----cchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 9876554 34667777778888888766555444433
No 181
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.49 E-value=1.9e-06 Score=75.45 Aligned_cols=122 Identities=19% Similarity=0.165 Sum_probs=86.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.+.+++||||+|.|-+...++..-.+|++|+. +.|.. .+...|.. .+...+|.+ .+.+||+|
T Consensus 93 ~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~----rL~~kg~~-------vl~~~~w~~------~~~~fDvI 155 (265)
T PF05219_consen 93 WKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRW----RLSKKGFT-------VLDIDDWQQ------TDFKFDVI 155 (265)
T ss_pred ccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHH----HHHhCCCe-------EEehhhhhc------cCCceEEE
Confidence 46679999999999999999888888999999 55633 33333332 122334542 23579999
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee--e-----------C------------hhHHHHHHHHHh-cCCeE
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL--R-----------N------------DSVLEYFLEAAM-KDFVI 253 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~--r-----------~------------~~~~~~fl~~~~-~~f~v 253 (281)
.|-.++=.-.....|++.+++.|+|+|+++++.-. + . .+....|.+.+. .||++
T Consensus 156 scLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v 235 (265)
T PF05219_consen 156 SCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEV 235 (265)
T ss_pred eehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEE
Confidence 99888877788899999999999999998877321 0 1 122445665454 49999
Q ss_pred EEEecC
Q 023543 254 GRVEQT 259 (281)
Q Consensus 254 ~~i~~~ 259 (281)
.+..+-
T Consensus 236 ~~~tr~ 241 (265)
T PF05219_consen 236 ERWTRL 241 (265)
T ss_pred EEEecc
Confidence 888654
No 182
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.48 E-value=9.9e-07 Score=78.24 Aligned_cols=74 Identities=19% Similarity=0.158 Sum_probs=57.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||+|||+|.++..+++.+.+|+++|+ +.+++.+++++... .++.+...|..+. .-+.||.|
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~-------~~v~ii~~D~~~~-----~~~~~d~V 95 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAA-------GNVEIIEGDALKV-----DLPEFNKV 95 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccC-------CCEEEEEeccccC-----CchhceEE
Confidence 46789999999999999999998889999999 78899999887541 3577776554321 12457988
Q ss_pred EEccccC
Q 023543 200 LGSDVIY 206 (281)
Q Consensus 200 ia~d~iy 206 (281)
+++-+.+
T Consensus 96 v~NlPy~ 102 (258)
T PRK14896 96 VSNLPYQ 102 (258)
T ss_pred EEcCCcc
Confidence 8876644
No 183
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.47 E-value=1.8e-06 Score=75.82 Aligned_cols=121 Identities=18% Similarity=0.198 Sum_probs=79.8
Q ss_pred ccCCCeEEEECCCcCHHHHHHHH-cC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCC-CCCCCcCCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAAL-LG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGD-DPDQDLIQP 194 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~-~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~-~~~~~~~~~ 194 (281)
..+|.+|||-|.|+|.+++++++ .| .+|+-.|. ++..+.|++|++.+++. +++.+..-|... .++.. .+.
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~----~~v~~~~~Dv~~~g~~~~-~~~ 112 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD----DNVTVHHRDVCEEGFDEE-LES 112 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC----TTEEEEES-GGCG--STT--TT
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC----CCceeEecceeccccccc-ccC
Confidence 46899999999999999999997 33 48999999 88999999999999886 578888877642 22211 235
Q ss_pred CCcEEEEccccCCCCcHHHHHHHHHHhh-CCCcEEEEEEeeeChhHHHHHHHHHhc-CCe
Q 023543 195 LPDYVLGSDVIYSEGAVGDLLDTLLQLC-GTQTTIFLAGELRNDSVLEYFLEAAMK-DFV 252 (281)
Q Consensus 195 ~fD~Iia~d~iy~~~~~~~ll~~l~~ll-~~~g~~~l~~~~r~~~~~~~fl~~~~~-~f~ 252 (281)
.+|.|+ -|+. .....+..+.+.| ++||.+.+-.+.-+ -.++..+.+++ +|.
T Consensus 113 ~~Davf-LDlp----~Pw~~i~~~~~~L~~~gG~i~~fsP~ie--Qv~~~~~~L~~~gf~ 165 (247)
T PF08704_consen 113 DFDAVF-LDLP----DPWEAIPHAKRALKKPGGRICCFSPCIE--QVQKTVEALREHGFT 165 (247)
T ss_dssp SEEEEE-EESS----SGGGGHHHHHHHE-EEEEEEEEEESSHH--HHHHHHHHHHHTTEE
T ss_pred cccEEE-EeCC----CHHHHHHHHHHHHhcCCceEEEECCCHH--HHHHHHHHHHHCCCe
Confidence 688655 3333 3455667777788 78887654433222 23456666664 775
No 184
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.45 E-value=7.7e-07 Score=79.56 Aligned_cols=76 Identities=18% Similarity=0.184 Sum_probs=55.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.++.+|||+|||+|.++..++..+.+|+++|+ +++++.+++|+.. .++.+...|+.+.. +.+-.++.|
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~--------~~v~~i~~D~~~~~---~~~~~~~~v 109 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE--------DNLTIIEGDALKVD---LSELQPLKV 109 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc--------CceEEEEChhhcCC---HHHcCcceE
Confidence 46789999999999999999998889999999 8899999887642 25677776654321 111114777
Q ss_pred EEccccCCC
Q 023543 200 LGSDVIYSE 208 (281)
Q Consensus 200 ia~d~iy~~ 208 (281)
+++-. |+.
T Consensus 110 v~NlP-Y~i 117 (272)
T PRK00274 110 VANLP-YNI 117 (272)
T ss_pred EEeCC-ccc
Confidence 77644 543
No 185
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.45 E-value=3.8e-06 Score=71.32 Aligned_cols=142 Identities=15% Similarity=0.122 Sum_probs=84.1
Q ss_pred ecchHHH--HHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCc
Q 023543 99 MWDSGVV--LGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGS 175 (281)
Q Consensus 99 ~W~~s~~--la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~ 175 (281)
-||.-.+ ..+||... .++..|-|+|||-+.++-.+ ..+.+|...|+ +. | ..
T Consensus 54 ~WP~nPvd~iI~~l~~~-------~~~~viaD~GCGdA~la~~~-~~~~~V~SfDLva~-----------n-------~~ 107 (219)
T PF05148_consen 54 KWPVNPVDVIIEWLKKR-------PKSLVIADFGCGDAKLAKAV-PNKHKVHSFDLVAP-----------N-------PR 107 (219)
T ss_dssp TSSS-HHHHHHHHHCTS--------TTS-EEEES-TT-HHHHH---S---EEEEESS-S-----------S-------TT
T ss_pred cCCCCcHHHHHHHHHhc-------CCCEEEEECCCchHHHHHhc-ccCceEEEeeccCC-----------C-------CC
Confidence 3776543 56666542 34569999999999777443 23456888888 32 1 12
Q ss_pred eEEEEEecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhc-CCeEE
Q 023543 176 AVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMK-DFVIG 254 (281)
Q Consensus 176 i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~-~f~v~ 254 (281)
+. .- +....++.+...|++|.|-.+ +-..+..++....|.||++|.++|+...-.....+.|.+.+.. ||.+.
T Consensus 108 Vt--ac---dia~vPL~~~svDv~VfcLSL-MGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~ 181 (219)
T PF05148_consen 108 VT--AC---DIANVPLEDESVDVAVFCLSL-MGTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLK 181 (219)
T ss_dssp EE--ES----TTS-S--TT-EEEEEEES----SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEE
T ss_pred EE--Ee---cCccCcCCCCceeEEEEEhhh-hCCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEE
Confidence 22 21 222334566789999988776 4466888999999999999999998765555556889988886 99887
Q ss_pred EEecCCCCCCCCCCcEEEEEEEecC
Q 023543 255 RVEQTQWHPDYCSPRVVVYILVKKL 279 (281)
Q Consensus 255 ~i~~~~~~~~~~~~~~~i~~~~~k~ 279 (281)
.-.. .+.-|.+|.++|..
T Consensus 182 ~~d~-------~n~~F~~f~F~K~~ 199 (219)
T PF05148_consen 182 SKDE-------SNKHFVLFEFKKIR 199 (219)
T ss_dssp EEE---------STTEEEEEEEE-S
T ss_pred eccc-------CCCeEEEEEEEEcC
Confidence 6532 45567788887754
No 186
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=3.8e-06 Score=70.98 Aligned_cols=103 Identities=20% Similarity=0.280 Sum_probs=70.0
Q ss_pred ccCCCeEEEECCCcCHHHHHHHH-cCC---EEEEEec-hhHHHHHHHHHHHhhcCCC-----CCCceEEEEEecCCCCCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAAL-LGA---QVILTDL-PDRLRLLKKNIENNLRHGD-----LRGSAVVTELTWGDDPDQ 189 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~-~g~---~V~~tD~-~~~l~~~~~N~~~n~~~~~-----~~~~i~~~~l~w~~~~~~ 189 (281)
..+|.+.||+|+|||.++.++++ .|+ .++++|. ++.++.+++|+...-.... ..++..+..-| -..-
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGD---gr~g 156 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGD---GRKG 156 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCC---cccc
Confidence 57899999999999999888885 343 3599999 9999999999987642100 12334444322 1111
Q ss_pred CcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 190 DLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 190 ~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
.-...|||-|-.... ...+.+.+...|+++|.+++-
T Consensus 157 ~~e~a~YDaIhvGAa------a~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 157 YAEQAPYDAIHVGAA------ASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CCccCCcceEEEccC------ccccHHHHHHhhccCCeEEEe
Confidence 113478998876533 366777777788899887654
No 187
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.36 E-value=2.1e-06 Score=78.65 Aligned_cols=131 Identities=12% Similarity=0.044 Sum_probs=79.4
Q ss_pred ecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc-CCEEEEEec-hhHHHHHHHHHHHhhcCCCC-CCc
Q 023543 99 MWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL-GAQVILTDL-PDRLRLLKKNIENNLRHGDL-RGS 175 (281)
Q Consensus 99 ~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~-g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~-~~~ 175 (281)
-|=-+.++..|+..... ..++.+|||||||-|---.-.... -..++|+|+ ...|+.|++........... ..+
T Consensus 43 NwvKs~LI~~~~~~~~~----~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~ 118 (331)
T PF03291_consen 43 NWVKSVLIQKYAKKVKQ----NRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYR 118 (331)
T ss_dssp HHHHHHHHHHHCHCCCC----TTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSE
T ss_pred HHHHHHHHHHHHHhhhc----cCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhcccccccccc
Confidence 37778888888654211 127789999999977433333333 357999999 77899998877432211000 011
Q ss_pred eEE-EEEecCCCCCC----CcCC--CCCcEEEEccccCC----CCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 176 AVV-TELTWGDDPDQ----DLIQ--PLPDYVLGSDVIYS----EGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 176 i~~-~~l~w~~~~~~----~~~~--~~fD~Iia~d~iy~----~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
..+ ..+-.++.+.. .+.. .+||+|-+--.+|+ +.....+++.+..+|+|||.++.+.+
T Consensus 119 ~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 119 FDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp ECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 111 11222333322 2233 48999988777766 45678899999999999999887766
No 188
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.34 E-value=1.7e-06 Score=73.63 Aligned_cols=124 Identities=15% Similarity=0.086 Sum_probs=79.7
Q ss_pred CeEEEECCCcCHHHHHHHH--cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 124 KKIVELGSGCGLVGCIAAL--LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~--~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
..+||||||.|-.-+.+|+ ....++|+|+ ...+..+.+.+...++. ++.+...+........+.+.++|-|.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~-----Nv~~~~~da~~~l~~~~~~~~v~~i~ 93 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLK-----NVRFLRGDARELLRRLFPPGSVDRIY 93 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTS-----SEEEEES-CTTHHHHHSTTTSEEEEE
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhccc-----ceEEEEccHHHHHhhcccCCchheEE
Confidence 3899999999988887776 4567999999 78888888888888765 78888866433222222335666555
Q ss_pred E--ccccCCCC------cHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhc---CCeEE
Q 023543 201 G--SDVIYSEG------AVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMK---DFVIG 254 (281)
Q Consensus 201 a--~d~iy~~~------~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~---~f~v~ 254 (281)
. .|.-.... ..+.+++.+.++|+|||.+.+..-. ..-.+..++.+.. +|...
T Consensus 94 i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~--~~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 94 INFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV--EEYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp EES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES---HHHHHHHHHHHHHHSTTEEEE
T ss_pred EeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC--HHHHHHHHHHHHhcCcCeEEc
Confidence 4 44432221 2588999999999999998776442 2333334444444 45544
No 189
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.31 E-value=2.4e-05 Score=75.00 Aligned_cols=135 Identities=13% Similarity=0.141 Sum_probs=86.2
Q ss_pred ecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHH-cC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCC
Q 023543 99 MWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAAL-LG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRG 174 (281)
Q Consensus 99 ~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~-~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~ 174 (281)
.-++|.+.+..|... ..+|.+|||++||.|-=+..+|. ++ ..|++.|+ +..++.+++|+++.++.
T Consensus 96 Qd~sS~l~~~~L~~~------~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~----- 164 (470)
T PRK11933 96 QEASSMLPVAALFAD------DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS----- 164 (470)
T ss_pred ECHHHHHHHHHhccC------CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----
Confidence 345555555555311 35788999999999977666665 32 47999999 78899999999998875
Q ss_pred ceEEEEEecCCCCCCCcCCCCCcEEEE----cc--ccCCC----------------CcHHHHHHHHHHhhCCCcEEEEE-
Q 023543 175 SAVVTELTWGDDPDQDLIQPLPDYVLG----SD--VIYSE----------------GAVGDLLDTLLQLCGTQTTIFLA- 231 (281)
Q Consensus 175 ~i~~~~l~w~~~~~~~~~~~~fD~Iia----~d--~iy~~----------------~~~~~ll~~l~~ll~~~g~~~l~- 231 (281)
++.+...|-.. ... .....||.|+. +. ++... .....++....++|+|||+++.+
T Consensus 165 nv~v~~~D~~~-~~~-~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 165 NVALTHFDGRV-FGA-ALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred eEEEEeCchhh-hhh-hchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 56655544211 111 12346999984 21 11111 11367888888999999986554
Q ss_pred Eee---eChhHHHHHHHH
Q 023543 232 GEL---RNDSVLEYFLEA 246 (281)
Q Consensus 232 ~~~---r~~~~~~~fl~~ 246 (281)
|.. -|..+++.|++.
T Consensus 243 CT~~~eENE~vV~~~L~~ 260 (470)
T PRK11933 243 CTLNREENQAVCLWLKET 260 (470)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 332 234456666654
No 190
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.27 E-value=2.8e-05 Score=68.68 Aligned_cols=56 Identities=21% Similarity=0.252 Sum_probs=45.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEec
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTW 183 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w 183 (281)
.++.+|||+|||+|.++..++..+.+|+++|+ +.+++.++.+.... .++.+...|.
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~-------~~v~v~~~D~ 84 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLY-------ERLEVIEGDA 84 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcC-------CcEEEEECch
Confidence 46789999999999999999998889999999 78899888776431 3566666554
No 191
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.24 E-value=3.9e-06 Score=70.37 Aligned_cols=104 Identities=20% Similarity=0.257 Sum_probs=69.4
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCE-----------EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQ-----------VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD 188 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~-----------V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~ 188 (281)
.++..|||--||+|.+.+.++..+.. +++.|+ +++++.++.|++..+.. ..+.+...|..+..
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~----~~i~~~~~D~~~l~- 101 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE----DYIDFIQWDARELP- 101 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C----GGEEEEE--GGGGG-
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccC----CceEEEecchhhcc-
Confidence 46789999999999999988875432 779999 88999999999988775 46777776554322
Q ss_pred CCcCCCCCcEEEEccccCCC---------CcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 189 QDLIQPLPDYVLGSDVIYSE---------GAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 189 ~~~~~~~fD~Iia~d~iy~~---------~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
+.+..+|+||+. .-|.. ..+..+++.+.+.+++ ..+++...
T Consensus 102 --~~~~~~d~Ivtn-PPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~ 151 (179)
T PF01170_consen 102 --LPDGSVDAIVTN-PPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTS 151 (179)
T ss_dssp --GTTSBSCEEEEE---STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEES
T ss_pred --cccCCCCEEEEC-cchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEEC
Confidence 344678977754 44542 2356677778888888 44444444
No 192
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.24 E-value=1.7e-06 Score=71.10 Aligned_cols=114 Identities=18% Similarity=0.078 Sum_probs=70.4
Q ss_pred CeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEc
Q 023543 124 KKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGS 202 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~ 202 (281)
+.|+|+.||.|-.++.+|+.+.+|+++|+ +..++.++.|++..++. +++.+..-||.+.......+..+|+|..+
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~----~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVA----DNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-G----GGEEEEES-HHHHGGGB------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCC----CcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 37999999999999999999999999999 88899999999999876 68999998886532221111127888874
Q ss_pred cc----------cCC------CCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHH
Q 023543 203 DV----------IYS------EGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEA 246 (281)
Q Consensus 203 d~----------iy~------~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~ 246 (281)
.. .|+ +-....+++...++.+. ++.+-.|+.+. .++.+.
T Consensus 77 PPWGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t~n----v~l~LPRn~dl-~ql~~~ 131 (163)
T PF09445_consen 77 PPWGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKITPN----VVLFLPRNSDL-NQLSQL 131 (163)
T ss_dssp --BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH-S-----EEEEEETTB-H-HHHHHT
T ss_pred CCCCCccccccCccCHHHccCCCCHHHHHHHHHhhCCC----EEEEeCCCCCH-HHHHHH
Confidence 43 222 22466777776666432 23344566553 334433
No 193
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.20 E-value=2.7e-06 Score=70.69 Aligned_cols=99 Identities=23% Similarity=0.293 Sum_probs=73.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.....+-|||+|+|++++.+|....+|++++. |...+++.+|+..++.. ++.+..-|. .+-.+ ...|+|
T Consensus 31 va~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~-----n~evv~gDA---~~y~f--e~ADvv 100 (252)
T COG4076 31 VAEDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDV-----NWEVVVGDA---RDYDF--ENADVV 100 (252)
T ss_pred HhhhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCc-----ceEEEeccc---ccccc--ccccee
Confidence 34578999999999999999998778999999 88899999999888775 677777442 22222 456888
Q ss_pred EE--ccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 023543 200 LG--SDVIYSEGAVGDLLDTLLQLCGTQTTIF 229 (281)
Q Consensus 200 ia--~d~iy~~~~~~~ll~~l~~ll~~~g~~~ 229 (281)
+| -|+..-.+..-+++..+-..|+..+.++
T Consensus 101 icEmlDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 101 ICEMLDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred HHHHhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 76 3444444555666777777887776653
No 194
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.18 E-value=3.6e-05 Score=67.17 Aligned_cols=126 Identities=13% Similarity=0.117 Sum_probs=84.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
.....|-|+|||-+-++. ..-.+|...|+-.+ | .++.+.. . ....+.+.+.|++|
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a~----------~-------~~V~~cD--m---~~vPl~d~svDvaV 233 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SERHKVHSFDLVAV----------N-------ERVIACD--M---RNVPLEDESVDVAV 233 (325)
T ss_pred cCceEEEecccchhhhhh---ccccceeeeeeecC----------C-------Cceeecc--c---cCCcCccCcccEEE
Confidence 345689999999886554 22335888887322 1 1222222 1 12345678899999
Q ss_pred EccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhc-CCeEEEEecCCCCCCCCCCcEEEEEEEecC
Q 023543 201 GSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMK-DFVIGRVEQTQWHPDYCSPRVVVYILVKKL 279 (281)
Q Consensus 201 a~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~-~f~v~~i~~~~~~~~~~~~~~~i~~~~~k~ 279 (281)
.|-.+ +-..+..++..+.++|++||.++|+...........|...+.. ||.+..... ...-|.+|.+.+-+
T Consensus 234 ~CLSL-Mgtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~-------~n~~F~lfefkK~~ 305 (325)
T KOG3045|consen 234 FCLSL-MGTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDV-------SNKYFTLFEFKKTP 305 (325)
T ss_pred eeHhh-hcccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhh-------hcceEEEEEEecCC
Confidence 88766 3456788999999999999999999865444455668888875 999877643 34456667666543
No 195
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.18 E-value=4.5e-06 Score=71.70 Aligned_cols=133 Identities=17% Similarity=0.118 Sum_probs=88.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.+|.+|||-+.|.|..++.+++.|+ +|+-++. +.+|++++.|=-..++. ...+++...|-.+ .-..+.+.+||+
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~---~~~i~iilGD~~e-~V~~~~D~sfDa 208 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELF---EIAIKIILGDAYE-VVKDFDDESFDA 208 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCcccc---ccccEEecccHHH-HHhcCCccccce
Confidence 4799999999999999999999999 8999999 88999998775443333 1234444433211 112356788998
Q ss_pred EEEccccCCC---CcHHHHHHHHHHhhCCCcEEEEEE--e---eeChhHHHHHHHHHhc-CCe-EEEEe
Q 023543 199 VLGSDVIYSE---GAVGDLLDTLLQLCGTQTTIFLAG--E---LRNDSVLEYFLEAAMK-DFV-IGRVE 257 (281)
Q Consensus 199 Iia~d~iy~~---~~~~~ll~~l~~ll~~~g~~~l~~--~---~r~~~~~~~fl~~~~~-~f~-v~~i~ 257 (281)
||--..=+.. -.-+.|.+.+.++|+|||.++--. + .|.-+......+++.+ ||. +..+.
T Consensus 209 IiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~ 277 (287)
T COG2521 209 IIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVR 277 (287)
T ss_pred EeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeeh
Confidence 8853322221 123778899999999999875332 2 2333444555666765 998 55554
No 196
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.14 E-value=2e-05 Score=64.72 Aligned_cols=84 Identities=8% Similarity=-0.101 Sum_probs=62.8
Q ss_pred EEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCc
Q 023543 148 ILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQT 226 (281)
Q Consensus 148 ~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g 226 (281)
+|+|+ ++|++.++++....... ...++.+...+.. +..+.+.+||+|+++.++++..+...+++.+.++|||||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~--~~~~i~~~~~d~~---~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG 75 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARS--CYKCIEWIEGDAI---DLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGS 75 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccccc--CCCceEEEEechh---hCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCe
Confidence 48999 88999998776532211 0135677665543 333456789999999999988899999999999999999
Q ss_pred EEEEEEeeeC
Q 023543 227 TIFLAGELRN 236 (281)
Q Consensus 227 ~~~l~~~~r~ 236 (281)
.+++......
T Consensus 76 ~l~i~d~~~~ 85 (160)
T PLN02232 76 RVSILDFNKS 85 (160)
T ss_pred EEEEEECCCC
Confidence 9988765443
No 197
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.13 E-value=8.4e-06 Score=73.07 Aligned_cols=114 Identities=14% Similarity=0.021 Sum_probs=71.6
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-EEEEEechh-HHHHHHHHHHHhhcCCC-CCCceEEEEEecCC-CCCC--CcCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDLPD-RLRLLKKNIENNLRHGD-LRGSAVVTELTWGD-DPDQ--DLIQP 194 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~~~-~l~~~~~N~~~n~~~~~-~~~~i~~~~l~w~~-~~~~--~~~~~ 194 (281)
.++..+++||||-|--.+-.-+.|. +++++|+.+ .++.+++..+....... ..=.+.+...|-.. .... ...++
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 3677899999999855555555565 599999955 49998876554321100 00023333322110 0001 12345
Q ss_pred CCcEEEEccccCC----CCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 195 LPDYVLGSDVIYS----EGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 195 ~fD~Iia~d~iy~----~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
+||+|-+--++|+ ......++..+.++|+|||.++-+.+.
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPD 239 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCc
Confidence 6998887777765 456788999999999999998766553
No 198
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.13 E-value=1.7e-05 Score=68.87 Aligned_cols=105 Identities=11% Similarity=-0.022 Sum_probs=75.0
Q ss_pred CeEEEECCCcCHHHHHHHHcCC--EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 124 KKIVELGSGCGLVGCIAALLGA--QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~~g~--~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
..+||||||.|-.-+.+|+..+ .++|+++ ...+..+.+.+.+.++. |+.+.+.|-....+...++.+.|-|.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-----Nlri~~~DA~~~l~~~~~~~sl~~I~ 124 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-----NLRLLCGDAVEVLDYLIPDGSLDKIY 124 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-----cEEEEcCCHHHHHHhcCCCCCeeEEE
Confidence 5899999999988888888665 4999999 77888888888887763 57777755433222222233566555
Q ss_pred E--ccccCCCCc------HHHHHHHHHHhhCCCcEEEEEEe
Q 023543 201 G--SDVIYSEGA------VGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 201 a--~d~iy~~~~------~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
. .|.-.-..+ .+.+++.+.+.|++||.+.++.-
T Consensus 125 i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 125 INFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 4 444433222 58899999999999999988754
No 199
>PLN02823 spermine synthase
Probab=98.13 E-value=3.1e-05 Score=71.19 Aligned_cols=127 Identities=10% Similarity=0.086 Sum_probs=81.5
Q ss_pred CCCeEEEECCCcCHHHHHHHHc-C-CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL-G-AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~-g-~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
+.++||.||+|.|..+..+.+. + .+|+++|+ +++++.++++...+.... ...++++..-|-..... ....+||+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~-~dprv~v~~~Da~~~L~--~~~~~yDv 179 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAF-CDKRLELIINDARAELE--KRDEKFDV 179 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccc-cCCceEEEEChhHHHHh--hCCCCccE
Confidence 4679999999999888877664 3 47999999 889999999876543211 12456666543211111 12468999
Q ss_pred EEEccccCCC-----C---cHHHHHH-HHHHhhCCCcEEEEEEee----eChhHHHHHHHHHhcCCeE
Q 023543 199 VLGSDVIYSE-----G---AVGDLLD-TLLQLCGTQTTIFLAGEL----RNDSVLEYFLEAAMKDFVI 253 (281)
Q Consensus 199 Iia~d~iy~~-----~---~~~~ll~-~l~~ll~~~g~~~l~~~~----r~~~~~~~fl~~~~~~f~v 253 (281)
|+. |+. ++ . .-..+++ .++++|+|+|++++-... .....+...+..+.+.|..
T Consensus 180 Ii~-D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF~~ 245 (336)
T PLN02823 180 IIG-DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVFKY 245 (336)
T ss_pred EEe-cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhCCC
Confidence 985 331 11 1 1346777 889999999987654322 2234455566777777753
No 200
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.12 E-value=2.6e-05 Score=70.11 Aligned_cols=83 Identities=19% Similarity=0.236 Sum_probs=49.2
Q ss_pred CCeEEEECCCcC-HHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHh-hcCCCCCCceEEEEEecCC-CCCCC-cCCCCC
Q 023543 123 GKKIVELGSGCG-LVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENN-LRHGDLRGSAVVTELTWGD-DPDQD-LIQPLP 196 (281)
Q Consensus 123 ~~~VLELGcGtG-~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n-~~~~~~~~~i~~~~l~w~~-~~~~~-~~~~~f 196 (281)
.-++||+|+|.- +..+..++ .|-+++|||+ +.+++.|++|++.| ++. ++|.+....=.+ .+... ..++.|
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~----~~I~l~~~~~~~~i~~~i~~~~e~~ 178 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLE----SRIELRKQKNPDNIFDGIIQPNERF 178 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-T----TTEEEEE--ST-SSTTTSTT--S-E
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccc----cceEEEEcCCccccchhhhccccee
Confidence 458999999985 44666555 6789999999 88899999999999 776 678776643111 12111 124679
Q ss_pred cEEEEccccCCCC
Q 023543 197 DYVLGSDVIYSEG 209 (281)
Q Consensus 197 D~Iia~d~iy~~~ 209 (281)
|+.+|+..+|...
T Consensus 179 dftmCNPPFy~s~ 191 (299)
T PF05971_consen 179 DFTMCNPPFYSSQ 191 (299)
T ss_dssp EEEEE-----SS-
T ss_pred eEEecCCccccCh
Confidence 9999999998844
No 201
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.11 E-value=0.0002 Score=62.15 Aligned_cols=148 Identities=16% Similarity=0.154 Sum_probs=91.3
Q ss_pred CceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHH--cCCEEEEEec-hhHHHHHHHHHHHhhcCCCC
Q 023543 96 GSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAAL--LGAQVILTDL-PDRLRLLKKNIENNLRHGDL 172 (281)
Q Consensus 96 G~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~--~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~ 172 (281)
|..++++++.-+.|+.++. .+.|++||=||=+ =+.|+++|. +..+|+.+|+ +..++..++.++..++.
T Consensus 23 ~~~T~eT~~~Ra~~~~~~g-----dL~gk~il~lGDD-DLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--- 93 (243)
T PF01861_consen 23 GYATPETTLRRAALMAERG-----DLEGKRILFLGDD-DLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--- 93 (243)
T ss_dssp --B-HHHHHHHHHHHHHTT------STT-EEEEES-T-T-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-----
T ss_pred ccccHHHHHHHHHHHHhcC-----cccCCEEEEEcCC-cHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc---
Confidence 4566889999999998753 4789999999833 367777776 4558999999 67799999999999874
Q ss_pred CCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCc-EEEEEEeeeChh--HHHHHHHHHh-
Q 023543 173 RGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQT-TIFLAGELRNDS--VLEYFLEAAM- 248 (281)
Q Consensus 173 ~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g-~~~l~~~~r~~~--~~~~fl~~~~- 248 (281)
+++...|..+..+..+ ..+||+++ .|..|..+.+..++......|+..| ..+++...+... ....+.+.+.
T Consensus 94 ---i~~~~~DlR~~LP~~~-~~~fD~f~-TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~ 168 (243)
T PF01861_consen 94 ---IEAVHYDLRDPLPEEL-RGKFDVFF-TDPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLE 168 (243)
T ss_dssp ---EEEE---TTS---TTT-SS-BSEEE-E---SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHT
T ss_pred ---eEEEEecccccCCHHH-hcCCCEEE-eCCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHH
Confidence 7888888776665543 36899654 8899999999999999888887655 778887776632 2122223333
Q ss_pred cCCeEEEEe
Q 023543 249 KDFVIGRVE 257 (281)
Q Consensus 249 ~~f~v~~i~ 257 (281)
.||-++.+-
T Consensus 169 ~gl~i~dii 177 (243)
T PF01861_consen 169 MGLVITDII 177 (243)
T ss_dssp S--EEEEEE
T ss_pred CCcCHHHHH
Confidence 388888774
No 202
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.09 E-value=7.3e-06 Score=73.63 Aligned_cols=107 Identities=12% Similarity=0.112 Sum_probs=71.8
Q ss_pred CeEEEECCCcC----HHHHHHHHc------CCEEEEEec-hhHHHHHHHHHHH----hhc--------------------
Q 023543 124 KKIVELGSGCG----LVGCIAALL------GAQVILTDL-PDRLRLLKKNIEN----NLR-------------------- 168 (281)
Q Consensus 124 ~~VLELGcGtG----~~~i~~a~~------g~~V~~tD~-~~~l~~~~~N~~~----n~~-------------------- 168 (281)
-+|.-.||.|| .+++.+... ..+|+|||+ +.+|+.|++.+-. .++
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 59999999999 445555442 136999999 7889999865211 000
Q ss_pred --CCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCC--CCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 169 --HGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYS--EGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 169 --~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~--~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
.......+.|...+..+... ....+||+|+|..++.+ .+....+++.+.+.|+|||.+++..
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~--~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQW--AVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEChHHHccCEEEcccCCCCCC--ccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 00112445566655433111 12368999999777644 5678999999999999999887775
No 203
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.07 E-value=6.5e-05 Score=68.22 Aligned_cols=151 Identities=17% Similarity=0.158 Sum_probs=85.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHH---------cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAAL---------LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD 190 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~---------~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~ 190 (281)
.++.+|+|-.||+|.+-+.+.. ...+++|.|+ +.++.+++.|+..++... ....+.. ++.+...
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~---~~~~i~~---~d~l~~~ 118 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDN---SNINIIQ---GDSLEND 118 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHC---BGCEEEE---S-TTTSH
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccc---ccccccc---ccccccc
Confidence 4677899999999977666654 3457999999 788999999988776541 1222333 3333222
Q ss_pred cC--CCCCcEEEEccccCCC---------------------CcHHHHHHHHHHhhCCCcEEEEEEeee---ChhHHHHHH
Q 023543 191 LI--QPLPDYVLGSDVIYSE---------------------GAVGDLLDTLLQLCGTQTTIFLAGELR---NDSVLEYFL 244 (281)
Q Consensus 191 ~~--~~~fD~Iia~d~iy~~---------------------~~~~~ll~~l~~ll~~~g~~~l~~~~r---~~~~~~~fl 244 (281)
.. +.+||+|+++-+.-.. ..--.++..+.+.|+++|++.+..+.. .......+.
T Consensus 119 ~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR 198 (311)
T PF02384_consen 119 KFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIR 198 (311)
T ss_dssp SCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHH
T ss_pred ccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHH
Confidence 21 4678988885443211 112347788889999999865555431 111223344
Q ss_pred HHHhcCCeEEEE---ecCCCCCCCCCCcEEEEEEEecC
Q 023543 245 EAAMKDFVIGRV---EQTQWHPDYCSPRVVVYILVKKL 279 (281)
Q Consensus 245 ~~~~~~f~v~~i---~~~~~~~~~~~~~~~i~~~~~k~ 279 (281)
+.+.+.+.++.+ +...+.+ ..-...|+.+.|+.
T Consensus 199 ~~ll~~~~i~aVI~Lp~~~F~~--t~v~t~ilil~k~~ 234 (311)
T PF02384_consen 199 KYLLENGYIEAVISLPSNLFKP--TGVPTSILILNKKK 234 (311)
T ss_dssp HHHHHHEEEEEEEE--TTSSSS--SSS-EEEEEEEESS
T ss_pred HHHHhhchhhEEeecccceecc--cCcCceEEEEeecc
Confidence 555555555555 3333222 23355566666654
No 204
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.04 E-value=3.4e-05 Score=66.05 Aligned_cols=129 Identities=13% Similarity=0.014 Sum_probs=79.7
Q ss_pred cCCCeEEEECCCcCHHHHHH-HHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIA-ALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~-a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
....++||.|||.|.++--+ ...-.+|.++|. +..++.|++.+...... ...+.+....+..+ ...+||+
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~-----v~~~~~~gLQ~f~P---~~~~YDl 125 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPR-----VGEFYCVGLQDFTP---EEGKYDL 125 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCC-----EEEEEES-GGG-------TT-EEE
T ss_pred CCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCC-----cceEEecCHhhccC---CCCcEeE
Confidence 34579999999999998754 445557999999 88899888765552211 22333322221111 2358999
Q ss_pred EEEccccCC--CCcHHHHHHHHHHhhCCCcEEEEEEeeeCh-------------hHHHHHHHHHh-cCCeEEEEe
Q 023543 199 VLGSDVIYS--EGAVGDLLDTLLQLCGTQTTIFLAGELRND-------------SVLEYFLEAAM-KDFVIGRVE 257 (281)
Q Consensus 199 Iia~d~iy~--~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~-------------~~~~~fl~~~~-~~f~v~~i~ 257 (281)
|..-.|+-+ ..++-.+++.++..|+|+|.+++=...-.. ...+.|.+.+. .|+++..-.
T Consensus 126 IW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 126 IWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp EEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred EEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEec
Confidence 999999877 456888999999999999998876433110 01344666665 488866654
No 205
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=0.00051 Score=63.79 Aligned_cols=122 Identities=24% Similarity=0.272 Sum_probs=78.6
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHc----CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALL----GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQP 194 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~----g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~ 194 (281)
..+|.+|||+.++.|-=+..+|.+ |..|++.|. +..++.++.|+++.|.. ++.+...|-...........
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-----nv~~~~~d~~~~~~~~~~~~ 228 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-----NVIVVNKDARRLAELLPGGE 228 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-----ceEEEecccccccccccccC
Confidence 367899999999998444444432 455899999 77899999999999886 45555544221111111123
Q ss_pred CCcEEEE------cccc-------CCC---------CcHHHHHHHHHHhhCCCcEEEEEE-ee---eChhHHHHHHHH
Q 023543 195 LPDYVLG------SDVI-------YSE---------GAVGDLLDTLLQLCGTQTTIFLAG-EL---RNDSVLEYFLEA 246 (281)
Q Consensus 195 ~fD~Iia------~d~i-------y~~---------~~~~~ll~~l~~ll~~~g~~~l~~-~~---r~~~~~~~fl~~ 246 (281)
+||.|+. ..++ +.. .....++....+++||||.++.+. .. -|....+.|++.
T Consensus 229 ~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~ 306 (355)
T COG0144 229 KFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLER 306 (355)
T ss_pred cCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHh
Confidence 5998886 2222 211 125678889999999999876554 32 344566666644
No 206
>KOG2497 consensus Predicted methyltransferase [General function prediction only]
Probab=98.01 E-value=2e-06 Score=75.93 Aligned_cols=141 Identities=28% Similarity=0.219 Sum_probs=92.2
Q ss_pred CceEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhH
Q 023543 77 GHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDR 155 (281)
Q Consensus 77 g~~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~ 155 (281)
.....+.|+.+.....+.||..+|++++.|..++.+..+ ...+.++.++|||.+...+.+++..--|...|- ..+
T Consensus 49 ~~~~v~~~~~~~~~~~~~tg~~~w~~al~L~~~l~~~~d----~~~~~~v~~l~~gi~~~~~~~a~~~~~v~~~~~~~~~ 124 (262)
T KOG2497|consen 49 PGTKVILQSHSLRFLLARTGLSVWESALSLEADLRDKPD----LSSELTVEELGCDIALKHVLAARVPDCVVTLDSLRCA 124 (262)
T ss_pred ccCeeeecchHHHHHHHHhccccchHHHHHHHHHhhCcc----cccccchHhhccCHHHHHHHHHhcccceecCCccCcH
Confidence 345667777776666788999999999999999987632 367899999999999888666665544555444 445
Q ss_pred HHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC-cCCCCCcEEEEccccCCCCcHHHHHHHHHHhhC
Q 023543 156 LRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD-LIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCG 223 (281)
Q Consensus 156 l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~-~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~ 223 (281)
.-+...+...+... .........++.|....... .....+|+|+++|++|. ....++++.+..+|.
T Consensus 125 ~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~AdV~yd-~~~~~~~~~~~~lL~ 191 (262)
T KOG2497|consen 125 GLLLEEIILLSRDL-SLEVRDSAPELNQAFLESKPETSQEFTDLLGGADVIYD-TELRHLLETLMTLLL 191 (262)
T ss_pred HHHHHHHHhccccc-cccccccchhHHHHHHhcCcccccchhhheeccCeeeh-hhhhHHHHHHHHHHH
Confidence 44444444433221 11112222333332211111 11223899999999999 888899998888663
No 207
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.01 E-value=6.2e-06 Score=70.12 Aligned_cols=108 Identities=19% Similarity=0.214 Sum_probs=67.0
Q ss_pred CCeEEEECCCcC----HHHHHHHH-----cC--CEEEEEec-hhHHHHHHHHHH-HhhcC-------------C------
Q 023543 123 GKKIVELGSGCG----LVGCIAAL-----LG--AQVILTDL-PDRLRLLKKNIE-NNLRH-------------G------ 170 (281)
Q Consensus 123 ~~~VLELGcGtG----~~~i~~a~-----~g--~~V~~tD~-~~~l~~~~~N~~-~n~~~-------------~------ 170 (281)
.-+|.-.||+|| .+++.+.. .+ .+|+|||+ +.+|+.|++-+= .+.+. .
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 348999999999 44555554 12 37999999 788998875210 01110 0
Q ss_pred ---CCCCceEEEEEecCCCCCCCcCCCCCcEEEEcccc-CC-CCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 171 ---DLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVI-YS-EGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 171 ---~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~i-y~-~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
.....+.|...+.-+ ......+||+|+|-.|+ |. .+....+++.+.+.|+|||.+++...
T Consensus 112 v~~~lr~~V~F~~~NL~~---~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 112 VKPELRKMVRFRRHNLLD---PDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp E-HHHHTTEEEEE--TT----S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred EChHHcCceEEEecccCC---CCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 013567888876554 11234689999998886 33 66789999999999999999988754
No 208
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.99 E-value=5.7e-05 Score=61.82 Aligned_cols=125 Identities=16% Similarity=0.152 Sum_probs=81.6
Q ss_pred CcCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCC---EEEEEec-hhHHHHHHHHHHHhhcC
Q 023543 94 VTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGA---QVILTDL-PDRLRLLKKNIENNLRH 169 (281)
Q Consensus 94 ~tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~---~V~~tD~-~~~l~~~~~N~~~n~~~ 169 (281)
+.|+. -|+|..+|+-+.+.++ ...|..|||+|.|||.+.-.+...|. .++++++ ++-...+.+...
T Consensus 25 tVGaI-~PsSs~lA~~M~s~I~----pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p----- 94 (194)
T COG3963 25 TVGAI-LPSSSILARKMASVID----PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP----- 94 (194)
T ss_pred eeeee-cCCcHHHHHHHHhccC----cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC-----
Confidence 34443 3666677777766433 35688999999999999988887775 4999999 787766654321
Q ss_pred CCCCCceEEEEEecCCCC--CCCcCCCCCcEEEEccccCCCCc--HHHHHHHHHHhhCCCcEEE-EEEe
Q 023543 170 GDLRGSAVVTELTWGDDP--DQDLIQPLPDYVLGSDVIYSEGA--VGDLLDTLLQLCGTQTTIF-LAGE 233 (281)
Q Consensus 170 ~~~~~~i~~~~l~w~~~~--~~~~~~~~fD~Iia~d~iy~~~~--~~~ll~~l~~ll~~~g~~~-l~~~ 233 (281)
.+.+.+.|..+.. -.+...+.||.|+++-.+-+... --.+++.+...+..||.++ +.+.
T Consensus 95 -----~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 95 -----GVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred -----CccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 1222332211111 11234577999999988877443 4567888888888888755 4444
No 209
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.98 E-value=5.4e-05 Score=76.28 Aligned_cols=106 Identities=16% Similarity=0.091 Sum_probs=71.3
Q ss_pred CCCeEEEECCCcCHHHHHHHHcC--------------------------------------------CEEEEEec-hhHH
Q 023543 122 HGKKIVELGSGCGLVGCIAALLG--------------------------------------------AQVILTDL-PDRL 156 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g--------------------------------------------~~V~~tD~-~~~l 156 (281)
.+..++|-+||+|.+.|.+|..+ .+++|+|+ +.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 46899999999999999887531 25999999 8999
Q ss_pred HHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCC----CCcHHHHHHHHHHhhC---CCcEEE
Q 023543 157 RLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYS----EGAVGDLLDTLLQLCG---TQTTIF 229 (281)
Q Consensus 157 ~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~----~~~~~~ll~~l~~ll~---~~g~~~ 229 (281)
+.+++|+..+++. +.+.+...|+.+... .....+||+|+++-.... ......+.+.+.+.++ +|+.++
T Consensus 270 ~~A~~N~~~~g~~----~~i~~~~~D~~~~~~-~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~ 344 (702)
T PRK11783 270 QAARKNARRAGVA----ELITFEVKDVADLKN-PLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAA 344 (702)
T ss_pred HHHHHHHHHcCCC----cceEEEeCChhhccc-ccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 9999999999886 457777766644221 112246898887644322 1234445444444443 666665
Q ss_pred EEE
Q 023543 230 LAG 232 (281)
Q Consensus 230 l~~ 232 (281)
+..
T Consensus 345 llt 347 (702)
T PRK11783 345 LFS 347 (702)
T ss_pred EEe
Confidence 543
No 210
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.92 E-value=0.00011 Score=67.84 Aligned_cols=104 Identities=17% Similarity=0.133 Sum_probs=76.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-----------------------------------------EEEEEec-hhHHHH
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-----------------------------------------QVILTDL-PDRLRL 158 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-----------------------------------------~V~~tD~-~~~l~~ 158 (281)
..+..++|-=||+|.+.|.+|.++. .+++.|+ +.+++.
T Consensus 190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~ 269 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG 269 (381)
T ss_pred CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence 4557999999999999999998774 3779999 899999
Q ss_pred HHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCC-----CC----cHHHHHHHHHHhhCCCcEEE
Q 023543 159 LKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYS-----EG----AVGDLLDTLLQLCGTQTTIF 229 (281)
Q Consensus 159 ~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~-----~~----~~~~ll~~l~~ll~~~g~~~ 229 (281)
|+.|+++.++. +.|.+...|..+.... + ..+|+||++.+ |- .. .+..|.+++++.++.-+..+
T Consensus 270 Ak~NA~~AGv~----d~I~f~~~d~~~l~~~-~--~~~gvvI~NPP-YGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v 341 (381)
T COG0116 270 AKANARAAGVG----DLIEFKQADATDLKEP-L--EEYGVVISNPP-YGERLGSEALVAKLYREFGRTLKRLLAGWSRYV 341 (381)
T ss_pred HHHHHHhcCCC----ceEEEEEcchhhCCCC-C--CcCCEEEeCCC-cchhcCChhhHHHHHHHHHHHHHHHhcCCceEE
Confidence 99999999987 6788888775432221 1 47888886544 33 11 35566667777777777766
Q ss_pred EEE
Q 023543 230 LAG 232 (281)
Q Consensus 230 l~~ 232 (281)
++.
T Consensus 342 ~tt 344 (381)
T COG0116 342 FTT 344 (381)
T ss_pred EEc
Confidence 653
No 211
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.92 E-value=0.00042 Score=67.61 Aligned_cols=151 Identities=13% Similarity=0.045 Sum_probs=85.6
Q ss_pred CCCeEEEECCCcCHHHHHHHHcC----------CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCC-C-C
Q 023543 122 HGKKIVELGSGCGLVGCIAALLG----------AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDD-P-D 188 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g----------~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~-~-~ 188 (281)
.+.+|||.|||+|.+.+.++... .++++.|+ +.++..++.|+...+.. .+.+...+.-.. . .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~-----~~~i~~~d~l~~~~~~ 105 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALL-----EINVINFNSLSYVLLN 105 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCC-----Cceeeecccccccccc
Confidence 45699999999998877776421 35899999 88899999998776411 122222111100 0 0
Q ss_pred CCcCCCCCcEEEEccccCCCC----------------------------------------------cHHHH-HHHHHHh
Q 023543 189 QDLIQPLPDYVLGSDVIYSEG----------------------------------------------AVGDL-LDTLLQL 221 (281)
Q Consensus 189 ~~~~~~~fD~Iia~d~iy~~~----------------------------------------------~~~~l-l~~l~~l 221 (281)
..-..++||+||++.+.-... .+-.+ ++...++
T Consensus 106 ~~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~l 185 (524)
T TIGR02987 106 IESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEI 185 (524)
T ss_pred cccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHh
Confidence 000125789999865543210 11113 3567788
Q ss_pred hCCCcEEEEEEeee--ChhHHHHHHHHHhcCCeEEEEecCCC-CCCCC--CCcEEEEEEEe
Q 023543 222 CGTQTTIFLAGELR--NDSVLEYFLEAAMKDFVIGRVEQTQW-HPDYC--SPRVVVYILVK 277 (281)
Q Consensus 222 l~~~g~~~l~~~~r--~~~~~~~fl~~~~~~f~v~~i~~~~~-~~~~~--~~~~~i~~~~~ 277 (281)
|+++|++.+..+.. .....+.|.+.+.+...+..+..-.. ...|. .....++.+.+
T Consensus 186 L~~~G~~~~I~P~s~l~~~~~~~lR~~ll~~~~i~~I~~f~~~~~lF~~v~~~~~i~~l~k 246 (524)
T TIGR02987 186 ANKNGYVSIISPASWLGDKTGENLREYIFNNRLINCIQYFQEEAKLFSGVNQATSIIHLNS 246 (524)
T ss_pred cCCCCEEEEEEChHHhcCccHHHHHHHHHhCCeeEEEEECCccccCcCCCCcceEEEEEEC
Confidence 99999977665532 22233445566666777777644321 11232 22455665554
No 212
>PRK00536 speE spermidine synthase; Provisional
Probab=97.90 E-value=0.00024 Score=63.04 Aligned_cols=120 Identities=9% Similarity=-0.101 Sum_probs=82.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
.+.++||=+|.|-|...-.+.+...+|+++|+ +++++.+++-........ ...++.+.. |-. .....+||+|
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~-~DpRv~l~~--~~~----~~~~~~fDVI 143 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVK-NNKNFTHAK--QLL----DLDIKKYDLI 143 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhh-cCCCEEEee--hhh----hccCCcCCEE
Confidence 35689999999999988888887669999999 788999998433221111 124555543 211 1123579999
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE--eeeChhHHHHHHHHHhcCCe
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG--ELRNDSVLEYFLEAAMKDFV 252 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~--~~r~~~~~~~fl~~~~~~f~ 252 (281)
| .|..+. +.+.+.+++.|+|+|+++.-. +.-..+.+......+++.|.
T Consensus 144 I-vDs~~~----~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~ 193 (262)
T PRK00536 144 I-CLQEPD----IHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFS 193 (262)
T ss_pred E-EcCCCC----hHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCC
Confidence 8 565554 677889999999999876633 22234455666677777787
No 213
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.89 E-value=2.7e-05 Score=72.39 Aligned_cols=97 Identities=20% Similarity=0.184 Sum_probs=68.7
Q ss_pred eEEEECCCcCHHHHHHHHcCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEc
Q 023543 125 KIVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGS 202 (281)
Q Consensus 125 ~VLELGcGtG~~~i~~a~~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~ 202 (281)
.|||+|+|||++++.+++.|+. |++++. ..|.+.+++-...|+.. +++.+.+-.-.+ . ........|+++..
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~S----dkI~vInkrSte-v-~vg~~~RadI~v~e 142 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMS----DKINVINKRSTE-V-KVGGSSRADIAVRE 142 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCc----cceeeeccccce-e-eecCcchhhhhhHh
Confidence 7899999999999999998885 999999 99999999999999887 567666522100 0 00111235666655
Q ss_pred cccCC---CCcHHHHHHHHHHhhCCCcE
Q 023543 203 DVIYS---EGAVGDLLDTLLQLCGTQTT 227 (281)
Q Consensus 203 d~iy~---~~~~~~ll~~l~~ll~~~g~ 227 (281)
+..-. +..++.+=.+..+|++++..
T Consensus 143 ~fdtEligeGalps~qhAh~~L~~~nc~ 170 (636)
T KOG1501|consen 143 DFDTELIGEGALPSLQHAHDMLLVDNCK 170 (636)
T ss_pred hhhhhhhccccchhHHHHHHHhcccCCe
Confidence 44322 44567777777788887654
No 214
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.88 E-value=4.4e-05 Score=67.88 Aligned_cols=110 Identities=15% Similarity=0.105 Sum_probs=73.0
Q ss_pred CCeEEEECCCcC----HHHHHHHHcC-------CEEEEEec-hhHHHHHHHHHHH-----hhcCC---------------
Q 023543 123 GKKIVELGSGCG----LVGCIAALLG-------AQVILTDL-PDRLRLLKKNIEN-----NLRHG--------------- 170 (281)
Q Consensus 123 ~~~VLELGcGtG----~~~i~~a~~g-------~~V~~tD~-~~~l~~~~~N~~~-----n~~~~--------------- 170 (281)
.-+|.-.||+|| .+++++...+ .+|+|||+ ..+|+.|+.-+=. -++..
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 458999999999 4555555422 36999999 7789988742211 11110
Q ss_pred ----CCCCceEEEEEecCCCCCCCcCCCCCcEEEEcccc-CC-CCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 171 ----DLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVI-YS-EGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 171 ----~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~i-y~-~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
.....|.|..++.. .......+||+|+|-+|+ |. ......+++.++..|+|||.+++.....
T Consensus 177 ~v~~~ir~~V~F~~~NLl---~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE~ 244 (268)
T COG1352 177 RVKEELRKMVRFRRHNLL---DDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHSET 244 (268)
T ss_pred EEChHHhcccEEeecCCC---CCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCcc
Confidence 01234455554432 222234679999998875 44 6778899999999999999999886543
No 215
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.88 E-value=0.0002 Score=61.31 Aligned_cols=118 Identities=14% Similarity=0.088 Sum_probs=73.9
Q ss_pred EEEECCCcCHHHHHHHHcCC--EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEc
Q 023543 126 IVELGSGCGLVGCIAALLGA--QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGS 202 (281)
Q Consensus 126 VLELGcGtG~~~i~~a~~g~--~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~ 202 (281)
|.|+||--|.+++.+.+.|. +++++|+ +.-++.|+.|+..+++. +++.+...| .+...-+.+..|.|+-+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~----~~i~~rlgd---GL~~l~~~e~~d~ivIA 73 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLE----DRIEVRLGD---GLEVLKPGEDVDTIVIA 73 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-T----TTEEEEE-S---GGGG--GGG---EEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCc----ccEEEEECC---cccccCCCCCCCEEEEe
Confidence 68999999999999999886 6999999 77899999999999876 577777743 22221122337888876
Q ss_pred cccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhcCCeEEE
Q 023543 203 DVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGR 255 (281)
Q Consensus 203 d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~v~~ 255 (281)
.+= -..+..++......++.... ++-++..+...+++|+. ..||.+..
T Consensus 74 GMG--G~lI~~ILe~~~~~~~~~~~-lILqP~~~~~~LR~~L~--~~gf~I~~ 121 (205)
T PF04816_consen 74 GMG--GELIIEILEAGPEKLSSAKR-LILQPNTHAYELRRWLY--ENGFEIID 121 (205)
T ss_dssp EE---HHHHHHHHHHTGGGGTT--E-EEEEESS-HHHHHHHHH--HTTEEEEE
T ss_pred cCC--HHHHHHHHHhhHHHhccCCe-EEEeCCCChHHHHHHHH--HCCCEEEE
Confidence 663 11234444444444444444 45566677777777773 35787543
No 216
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.87 E-value=4.7e-05 Score=60.81 Aligned_cols=56 Identities=27% Similarity=0.390 Sum_probs=47.2
Q ss_pred eEEEECCCcCHHHHHHHHcCC--EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCC
Q 023543 125 KIVELGSGCGLVGCIAALLGA--QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGD 185 (281)
Q Consensus 125 ~VLELGcGtG~~~i~~a~~g~--~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~ 185 (281)
+|||+|||.|..++.+++.+. +|+++|. +.+.+.+++|+..|+.. ++.+.+..+++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-----~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-----NVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-----cEEEEEeeeeC
Confidence 489999999999999998765 5999999 89999999999999764 46666666554
No 217
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.86 E-value=0.00019 Score=63.89 Aligned_cols=112 Identities=15% Similarity=0.086 Sum_probs=82.8
Q ss_pred CCeEEEECCCcCHHHHHHHH--cC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 123 GKKIVELGSGCGLVGCIAAL--LG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~--~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.-+|||+.||.|.-=+-+.. .. .+|.+.|+ +..++..++-++.+++. +.+++.+.|-.+.....-..+.++
T Consensus 136 pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~----~i~~f~~~dAfd~~~l~~l~p~P~ 211 (311)
T PF12147_consen 136 PVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLE----DIARFEQGDAFDRDSLAALDPAPT 211 (311)
T ss_pred ceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCc----cceEEEecCCCCHhHhhccCCCCC
Confidence 34999999999965443322 22 36999999 77899999999999987 455888866544333333457789
Q ss_pred EEEEccccCCC---CcHHHHHHHHHHhhCCCcEEEEEEeeeChh
Q 023543 198 YVLGSDVIYSE---GAVGDLLDTLLQLCGTQTTIFLAGELRNDS 238 (281)
Q Consensus 198 ~Iia~d~iy~~---~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~ 238 (281)
++|.+.++-.- ..+...++-+..++.|||.++.+.+..++.
T Consensus 212 l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ 255 (311)
T PF12147_consen 212 LAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ 255 (311)
T ss_pred EEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc
Confidence 99998886443 336778888999999999998888776654
No 218
>PHA01634 hypothetical protein
Probab=97.76 E-value=0.00012 Score=57.25 Aligned_cols=71 Identities=18% Similarity=0.150 Sum_probs=54.6
Q ss_pred cccCCCeEEEECCCcCHHHHHHHHcCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 119 LLLHGKKIVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 119 ~~~~~~~VLELGcGtG~~~i~~a~~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
..+++++|+|+|+++|-.+|.++..||+ |++.+. +...+..++|++.|.+- ++. +..-.|.. .-++|
T Consensus 25 idvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~----DK~-v~~~eW~~------~Y~~~ 93 (156)
T PHA01634 25 LNVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNIC----DKA-VMKGEWNG------EYEDV 93 (156)
T ss_pred eeecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheee----ece-eecccccc------cCCCc
Confidence 4589999999999999999999999996 999999 77788999999988543 122 22335653 12678
Q ss_pred cEEE
Q 023543 197 DYVL 200 (281)
Q Consensus 197 D~Ii 200 (281)
|+.+
T Consensus 94 Di~~ 97 (156)
T PHA01634 94 DIFV 97 (156)
T ss_pred ceEE
Confidence 8654
No 219
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.69 E-value=0.00076 Score=57.71 Aligned_cols=135 Identities=18% Similarity=0.084 Sum_probs=83.1
Q ss_pred cchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcC-CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceE
Q 023543 100 WDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLG-AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAV 177 (281)
Q Consensus 100 W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g-~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~ 177 (281)
-+++.+|.+||.............-++||+||=+....+. ..+ .+|+.+|+ +.- ..
T Consensus 29 GdSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns~~--------------------~~ 86 (219)
T PF11968_consen 29 GDSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS--TSGWFDVTRIDLNSQH--------------------PG 86 (219)
T ss_pred CchhHHHHHHhhhhccccccccccceEEeecccCCCCccc--ccCceeeEEeecCCCC--------------------CC
Confidence 4789999999987532111111235999999875533322 222 35999999 421 11
Q ss_pred EEEEecCCCCCCCcCCCCCcEEEEccccCCC---CcHHHHHHHHHHhhCCCcE-----EEEEEee------eChhHHHHH
Q 023543 178 VTELTWGDDPDQDLIQPLPDYVLGSDVIYSE---GAVGDLLDTLLQLCGTQTT-----IFLAGEL------RNDSVLEYF 243 (281)
Q Consensus 178 ~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~---~~~~~ll~~l~~ll~~~g~-----~~l~~~~------r~~~~~~~f 243 (281)
+.+-|+-+.+-+....+.||+|.++-|+-.. ..--.+++.+.++|+++|. ++++-+. |+- +.+.|
T Consensus 87 I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~-~~~~l 165 (219)
T PF11968_consen 87 ILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYM-TEERL 165 (219)
T ss_pred ceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhccccc-CHHHH
Confidence 2333443332222245789999999998663 3456789999999999999 8877653 332 23445
Q ss_pred HHHHhc-CCeEEEEe
Q 023543 244 LEAAMK-DFVIGRVE 257 (281)
Q Consensus 244 l~~~~~-~f~v~~i~ 257 (281)
...+.. ||...+-.
T Consensus 166 ~~im~~LGf~~~~~~ 180 (219)
T PF11968_consen 166 REIMESLGFTRVKYK 180 (219)
T ss_pred HHHHHhCCcEEEEEE
Confidence 555543 88765543
No 220
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.67 E-value=0.00071 Score=59.63 Aligned_cols=142 Identities=12% Similarity=0.061 Sum_probs=88.3
Q ss_pred CCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCC-CCc
Q 023543 122 HGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQP-LPD 197 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~-~fD 197 (281)
+.++||=||-|.|...-.+.+.. .+|+++|+ +.+++.+++-....... -...++++..-|-...... ... +||
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~-~~d~r~~i~~~Dg~~~l~~--~~~~~yD 152 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEG-LDDPRVRIIIGDGRKFLKE--TQEEKYD 152 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTT-GGSTTEEEEESTHHHHHHT--SSST-EE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccc-cCCCceEEEEhhhHHHHHh--ccCCccc
Confidence 67899999999998877777754 57999999 88899999876554321 0124666655331110011 123 899
Q ss_pred EEEE--ccccCCCC--cHHHHHHHHHHhhCCCcEEEEEEee--eChhHHHHHHHHHhcCCeEEEEecCCCCCCCCC
Q 023543 198 YVLG--SDVIYSEG--AVGDLLDTLLQLCGTQTTIFLAGEL--RNDSVLEYFLEAAMKDFVIGRVEQTQWHPDYCS 267 (281)
Q Consensus 198 ~Iia--~d~iy~~~--~~~~ll~~l~~ll~~~g~~~l~~~~--r~~~~~~~fl~~~~~~f~v~~i~~~~~~~~~~~ 267 (281)
+|+. .|...... .-..+++.++++|+|+|++++-... .....+......++..|.. .-.....-|.|..
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~-v~~~~~~vP~~~~ 227 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQ-VKPYTAYVPSYGS 227 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSE-EEEEEEECTTSCS
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCc-eEEEEEEcCeecc
Confidence 9986 33221111 1378999999999999997765432 3345556666777777762 2223344566655
No 221
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=0.0021 Score=54.76 Aligned_cols=138 Identities=17% Similarity=0.132 Sum_probs=83.1
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHc-CC--EEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC-----Cc
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALL-GA--QVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ-----DL 191 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~-g~--~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~-----~~ 191 (281)
..++.+|+||||-.|-.+-.+++. ++ +|+++|+..+- ....+.+.+.|..+.... .+
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~---------------~~~~V~~iq~d~~~~~~~~~l~~~l 107 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK---------------PIPGVIFLQGDITDEDTLEKLLEAL 107 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc---------------cCCCceEEeeeccCccHHHHHHHHc
Confidence 446789999999999999988874 33 39999994440 112466666665543221 23
Q ss_pred CCCCCcEEEEccccCC------------CCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhcCCeEEEEecC
Q 023543 192 IQPLPDYVLGSDVIYS------------EGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVIGRVEQT 259 (281)
Q Consensus 192 ~~~~fD~Iia~d~iy~------------~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~v~~i~~~ 259 (281)
.+.++|+|++ |.--+ .......+......|+++|.+++-.- +... .+.++..+++.|+.-.+...
T Consensus 108 ~~~~~DvV~s-D~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f-qg~~-~~~~l~~~~~~F~~v~~~KP 184 (205)
T COG0293 108 GGAPVDVVLS-DMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF-QGED-FEDLLKALRRLFRKVKIFKP 184 (205)
T ss_pred CCCCcceEEe-cCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE-eCCC-HHHHHHHHHHhhceeEEecC
Confidence 4456798874 22211 12234455566668899998765543 3332 35688888888875555321
Q ss_pred CCCCCCCCCcEEEEEEEec
Q 023543 260 QWHPDYCSPRVVVYILVKK 278 (281)
Q Consensus 260 ~~~~~~~~~~~~i~~~~~k 278 (281)
+..+.....+|.+-+.
T Consensus 185 ---~aSR~~S~E~y~v~~~ 200 (205)
T COG0293 185 ---KASRKRSREIYLVAKG 200 (205)
T ss_pred ---ccccCCCceEEEEEec
Confidence 1223334466665543
No 222
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.66 E-value=0.00026 Score=56.85 Aligned_cols=47 Identities=21% Similarity=0.174 Sum_probs=39.4
Q ss_pred cCCCeEEEECCCcCHHHHHHHH------cCCEEEEEec-hhHHHHHHHHHHHhh
Q 023543 121 LHGKKIVELGSGCGLVGCIAAL------LGAQVILTDL-PDRLRLLKKNIENNL 167 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~------~g~~V~~tD~-~~~l~~~~~N~~~n~ 167 (281)
.+..+|+|+|||-|.++..++. .+.+|+++|. +..++.+++..+..+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 4567999999999999999988 4568999999 777888887777655
No 223
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.65 E-value=0.00027 Score=68.58 Aligned_cols=106 Identities=14% Similarity=0.021 Sum_probs=72.2
Q ss_pred CCCeEEEECCCcCHHHHHHHHcCC--EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAALLGA--QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g~--~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.+..+||||||.|-..+.+|+..+ .++|+|+ ...+..+.+.+...++. |+.+...+... ....+.+.++|-
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~-----N~~~~~~~~~~-~~~~~~~~sv~~ 420 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNIT-----NFLLFPNNLDL-ILNDLPNNSLDG 420 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCC-----eEEEEcCCHHH-HHHhcCcccccE
Confidence 466899999999988888887554 5999999 66666666666665554 56665544321 112244566776
Q ss_pred EEE--ccccCCCC------cHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 199 VLG--SDVIYSEG------AVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 199 Iia--~d~iy~~~------~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
|.. .|...... ..+.+++.+.++|+|||.+.+..-
T Consensus 421 i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 421 IYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred EEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 665 44443322 257899999999999999887644
No 224
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.65 E-value=0.0016 Score=50.31 Aligned_cols=103 Identities=23% Similarity=0.243 Sum_probs=64.6
Q ss_pred EEEECCCcCHHHHHHHHcC---CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCC-CCCcEEE
Q 023543 126 IVELGSGCGLVGCIAALLG---AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQ-PLPDYVL 200 (281)
Q Consensus 126 VLELGcGtG~~~i~~a~~g---~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~-~~fD~Ii 200 (281)
++|+|||+|... .++... ..++++|. +.++...+.+... ... ..+.+...++... ...+.+ ..||++
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~-~~~~~~~~~~d~~- 123 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGL----GLVDFVVADALGG-VLPFEDSASFDLV- 123 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCC----CceEEEEeccccC-CCCCCCCCceeEE-
Confidence 999999999866 444433 37899999 6777764433322 211 1144455443321 122233 479999
Q ss_pred EccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeC
Q 023543 201 GSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRN 236 (281)
Q Consensus 201 a~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~ 236 (281)
.....++......++..+.+.++++|.+++......
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 124 ISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred eeeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 544443322288999999999999999888766543
No 225
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.65 E-value=0.00012 Score=62.61 Aligned_cols=102 Identities=23% Similarity=0.258 Sum_probs=53.5
Q ss_pred cCCCeEEEECCCcCHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHh-------hcCCCCCCceEEEEEecCCCCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENN-------LRHGDLRGSAVVTELTWGDDPDQD 190 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n-------~~~~~~~~~i~~~~l~w~~~~~~~ 190 (281)
-++...+|||||.|.+-+.+|. .+. +++|+++ +...+.++.+.+.. +.. ...+.+.. ++..+..
T Consensus 41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~---~~~v~l~~---gdfl~~~ 114 (205)
T PF08123_consen 41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKR---PGKVELIH---GDFLDPD 114 (205)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB------EEEEEC---S-TTTHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcc---cccceeec---cCccccH
Confidence 4678999999999987776664 455 5999999 76666665544332 221 12344343 3322211
Q ss_pred cC---CCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 023543 191 LI---QPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIF 229 (281)
Q Consensus 191 ~~---~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~ 229 (281)
.. -...|+|.++...|.++....|.+. ...||+|.+++
T Consensus 115 ~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~-~~~lk~G~~II 155 (205)
T PF08123_consen 115 FVKDIWSDADVVFVNNTCFDPDLNLALAEL-LLELKPGARII 155 (205)
T ss_dssp HHHHHGHC-SEEEE--TTT-HHHHHHHHHH-HTTS-TT-EEE
T ss_pred hHhhhhcCCCEEEEeccccCHHHHHHHHHH-HhcCCCCCEEE
Confidence 10 1346999999999887766666433 34567777764
No 226
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.63 E-value=0.00013 Score=69.36 Aligned_cols=125 Identities=12% Similarity=0.051 Sum_probs=73.2
Q ss_pred CceecchHHHHHHHHhhhhccCccccCC---CeEEEECCCcCHHHHHHHHcCCEEEEEe---c-hhHHHHHHHHHHHhhc
Q 023543 96 GSVMWDSGVVLGKFLEHAVDSGMLLLHG---KKIVELGSGCGLVGCIAALLGAQVILTD---L-PDRLRLLKKNIENNLR 168 (281)
Q Consensus 96 G~~~W~~s~~la~~l~~~~~~~~~~~~~---~~VLELGcGtG~~~i~~a~~g~~V~~tD---~-~~~l~~~~~N~~~n~~ 168 (281)
|.....++..-.+.|.+.+. ....+ ..+||+|||+|.+|..+..++..++.+- . +..++.|.+ .|+
T Consensus 91 gt~F~~Ga~~Yid~i~~~~~---~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale----RGv 163 (506)
T PF03141_consen 91 GTMFPHGADHYIDQIAEMIP---LIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE----RGV 163 (506)
T ss_pred CccccCCHHHHHHHHHHHhh---ccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh----cCc
Confidence 33444455544555554332 11233 3789999999999888888776543332 2 222333321 222
Q ss_pred CCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCCCc-HHHHHHHHHHhhCCCcEEEEEEeeeC
Q 023543 169 HGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGA-VGDLLDTLLQLCGTQTTIFLAGELRN 236 (281)
Q Consensus 169 ~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~-~~~ll~~l~~ll~~~g~~~l~~~~r~ 236 (281)
.. -+.+. ......++...||+|-++.|.-.... -..++-.+.|+|+|||.++++.+.-+
T Consensus 164 pa----~~~~~-----~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 164 PA----MIGVL-----GSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred ch----hhhhh-----ccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCccc
Confidence 20 01010 00122356678999999998765322 24577888999999999999987644
No 227
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.63 E-value=0.001 Score=60.85 Aligned_cols=111 Identities=15% Similarity=0.072 Sum_probs=65.5
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
..+|+++|||||++|-.+-.+.+.|++|+++|...+-..+ ..+ +++....-+--...+ ...++|++
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~~L----~~~-------~~V~h~~~d~fr~~p---~~~~vDwv 274 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQSL----MDT-------GQVEHLRADGFKFRP---PRKNVDWL 274 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCHhh----hCC-------CCEEEEeccCcccCC---CCCCCCEE
Confidence 4689999999999999999999999999999974442222 221 345444433111111 14678976
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCC--cEEEEEEee---eChhHHHHHHHHHh
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQ--TTIFLAGEL---RNDSVLEYFLEAAM 248 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~--g~~~l~~~~---r~~~~~~~fl~~~~ 248 (281)
+ ||++-.+ ..+.+.+.+.+..| ..+++.-+. +.......+++.+.
T Consensus 275 V-cDmve~P---~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~~i~ 324 (357)
T PRK11760 275 V-CDMVEKP---ARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLELIE 324 (357)
T ss_pred E-EecccCH---HHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 6 6666443 35555566666544 334444433 22233455665444
No 228
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.0045 Score=53.71 Aligned_cols=146 Identities=21% Similarity=0.214 Sum_probs=86.9
Q ss_pred cchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCE-EEEEec-h-hHHHHHHHHHHHhhcCCCCCCce
Q 023543 100 WDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQ-VILTDL-P-DRLRLLKKNIENNLRHGDLRGSA 176 (281)
Q Consensus 100 W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~-V~~tD~-~-~~l~~~~~N~~~n~~~~~~~~~i 176 (281)
=.++..|...+.+. ...++|+.|||+|+-||-+.-++.+.||+ |+++|. - +.--.+|.+ .++
T Consensus 61 SRG~~KL~~ale~F----~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d-----------~rV 125 (245)
T COG1189 61 SRGGLKLEKALEEF----ELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRND-----------PRV 125 (245)
T ss_pred ccHHHHHHHHHHhc----CcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcC-----------CcE
Confidence 34577888888764 34689999999999999999999999885 999999 3 232223311 222
Q ss_pred EEEE-EecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe---------------eeChh--
Q 023543 177 VVTE-LTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE---------------LRNDS-- 238 (281)
Q Consensus 177 ~~~~-l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~---------------~r~~~-- 238 (281)
.+.+ .+.....+..+ .++.|++++-..+ -.+..++..+..++++++.++.-.. .+++.
T Consensus 126 ~~~E~tN~r~l~~~~~-~~~~d~~v~DvSF---ISL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~ 201 (245)
T COG1189 126 IVLERTNVRYLTPEDF-TEKPDLIVIDVSF---ISLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLH 201 (245)
T ss_pred EEEecCChhhCCHHHc-ccCCCeEEEEeeh---hhHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchH
Confidence 2222 11111112222 2367877753332 2356677788888888876543321 13332
Q ss_pred --HHHHHHHHHhc-CCeEEEEecCCCCCC
Q 023543 239 --VLEYFLEAAMK-DFVIGRVEQTQWHPD 264 (281)
Q Consensus 239 --~~~~fl~~~~~-~f~v~~i~~~~~~~~ 264 (281)
....+.+.+.. +|.+..+......-.
T Consensus 202 ~~v~~~i~~~~~~~g~~~~gl~~Spi~G~ 230 (245)
T COG1189 202 AEVLSKIENFAKELGFQVKGLIKSPIKGG 230 (245)
T ss_pred HHHHHHHHHHHhhcCcEEeeeEccCccCC
Confidence 23333333443 799888876655443
No 229
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.54 E-value=0.00039 Score=59.27 Aligned_cols=109 Identities=15% Similarity=0.209 Sum_probs=79.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.+|++||++|-|.|++.-.+..... +-+.++. +++++.++.+.-.. ..++.+....|.+..+. +++..||-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e------k~nViil~g~WeDvl~~-L~d~~FDG 172 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE------KENVIILEGRWEDVLNT-LPDKHFDG 172 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc------ccceEEEecchHhhhcc-ccccCcce
Confidence 6899999999999998877766444 4677788 99998888765433 35688888899876654 45677996
Q ss_pred EEEcccc-CCCCcHHHHHHHHHHhhCCCcEEEEEEeeeCh
Q 023543 199 VLGSDVI-YSEGAVGDLLDTLLQLCGTQTTIFLAGELRND 237 (281)
Q Consensus 199 Iia~d~i-y~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~ 237 (281)
|.- |+. -..+++..+.+.+.+||||+|++-+......+
T Consensus 173 I~y-DTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~~~ 211 (271)
T KOG1709|consen 173 IYY-DTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGLGAD 211 (271)
T ss_pred eEe-echhhHHHHHHHHHHHHhhhcCCCceEEEecCcccc
Confidence 652 332 22456788888999999999987666544433
No 230
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.51 E-value=8.7e-05 Score=63.75 Aligned_cols=100 Identities=13% Similarity=0.101 Sum_probs=74.3
Q ss_pred CCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 122 HGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
....++|||||-|.++-.+-..+. +++.+|. -.|++.++.. +.+ .+....+- ++.....+...++|+|
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp--------~i~~~~~v-~DEE~Ldf~ens~DLi 141 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDP--------SIETSYFV-GDEEFLDFKENSVDLI 141 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCC--------ceEEEEEe-cchhcccccccchhhh
Confidence 346899999999998887777665 5999999 6788776632 222 23333322 2222233566789999
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
|++-.+|+..+++.-+..++..|||.|.++-+
T Consensus 142 isSlslHW~NdLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 142 ISSLSLHWTNDLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhhhhhhhhccCchHHHHHHHhcCCCccchhH
Confidence 99999999999999999999999999987644
No 231
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.50 E-value=0.00038 Score=61.49 Aligned_cols=139 Identities=22% Similarity=0.270 Sum_probs=76.3
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhc-C------------CC----------CCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLR-H------------GD----------LRG 174 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~-~------------~~----------~~~ 174 (281)
..+|.++||+|||.-+.-+..|..-+ +|+++|+ +.-++.+++=++.-+. + .. .+.
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 46788999999998766555554444 6999999 6666655543322210 0 00 011
Q ss_pred ceE-EEEEecCCCCCCC--c-CCCCCcEEEEccccCC----CCcHHHHHHHHHHhhCCCcEEEEEEeeeCh---------
Q 023543 175 SAV-VTELTWGDDPDQD--L-IQPLPDYVLGSDVIYS----EGAVGDLLDTLLQLCGTQTTIFLAGELRND--------- 237 (281)
Q Consensus 175 ~i~-~~~l~w~~~~~~~--~-~~~~fD~Iia~d~iy~----~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~--------- 237 (281)
.++ +...|-....+.. . ..++||+|+++-++-. .+.+...++.+.++|||||.++++.-....
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F 213 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKF 213 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEec
Confidence 122 2232322222111 1 1235999999877643 455777888888899999998887654320
Q ss_pred ---hHHHHHHHHH-h-cCCeEEEEec
Q 023543 238 ---SVLEYFLEAA-M-KDFVIGRVEQ 258 (281)
Q Consensus 238 ---~~~~~fl~~~-~-~~f~v~~i~~ 258 (281)
..-+.|+... . .||.+.....
T Consensus 214 ~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 214 PCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp E---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred ccccCCHHHHHHHHHHcCCEEEeccc
Confidence 1123344333 3 4999888873
No 232
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.47 E-value=0.002 Score=57.67 Aligned_cols=103 Identities=20% Similarity=0.243 Sum_probs=60.5
Q ss_pred ccCCCeEEEECCCcCHHHHHHHH-cC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC-CCcCCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAAL-LG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD-QDLIQP 194 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~-~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~-~~~~~~ 194 (281)
.+..++|||+|||+|....++.. .+ .+++++|. +.|+++++.-++.. ... ....|..... ......
T Consensus 31 ~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~-~~~--------~~~~~~~~~~~~~~~~~ 101 (274)
T PF09243_consen 31 DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG-PNN--------RNAEWRRVLYRDFLPFP 101 (274)
T ss_pred CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc-ccc--------ccchhhhhhhcccccCC
Confidence 47788999999999975544443 22 35999999 77888777644332 110 0111111111 111223
Q ss_pred CCcEEEEccccCCCC--cHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 195 LPDYVLGSDVIYSEG--AVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 195 ~fD~Iia~d~iy~~~--~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
+.|+|+++.++-... ....+++.+.+.+++ .++++.+
T Consensus 102 ~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEp 140 (274)
T PF09243_consen 102 PDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEP 140 (274)
T ss_pred CCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcC
Confidence 459999999987643 355566666555555 5555544
No 233
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.42 E-value=0.00026 Score=59.08 Aligned_cols=136 Identities=18% Similarity=0.100 Sum_probs=68.7
Q ss_pred hHHHHHHHHhhhhccCccc-c-CCCeEEEECCCcCHHHHHHHHcC---CEEEEEechhHHHHHHHHHHHhhcCCCCCCce
Q 023543 102 SGVVLGKFLEHAVDSGMLL-L-HGKKIVELGSGCGLVGCIAALLG---AQVILTDLPDRLRLLKKNIENNLRHGDLRGSA 176 (281)
Q Consensus 102 ~s~~la~~l~~~~~~~~~~-~-~~~~VLELGcGtG~~~i~~a~~g---~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i 176 (281)
++..|.+-+... ... . .+.+||||||++|-.+-++...+ .+|+++|+..+-.. .+-.. ..+++
T Consensus 5 a~~KL~ei~~~~----~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~------~~~~~--i~~d~ 72 (181)
T PF01728_consen 5 AAFKLYEIDEKF----KIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL------QNVSF--IQGDI 72 (181)
T ss_dssp HHHHHHHHHHTT----SSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-------TTEEB--TTGGG
T ss_pred HHHHHHHHHHHC----CCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc------cceee--eeccc
Confidence 455566665543 111 2 45899999999999999988877 57999999333000 00000 00111
Q ss_pred EEEEEecCCCCCCCcC--CCCCcEEEEccccCC-----------CCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHH
Q 023543 177 VVTELTWGDDPDQDLI--QPLPDYVLGSDVIYS-----------EGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYF 243 (281)
Q Consensus 177 ~~~~l~w~~~~~~~~~--~~~fD~Iia~d~iy~-----------~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~f 243 (281)
......+.....+. ..+||+|++=-.... .......+..+..+|++||.+++-.-. .... +.+
T Consensus 73 --~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~-~~~~-~~~ 148 (181)
T PF01728_consen 73 --TNPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK-GPEI-EEL 148 (181)
T ss_dssp --EEEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS-STTS-HHH
T ss_pred --chhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc-CccH-HHH
Confidence 11111111111111 268998886221111 112333444555678999986654332 2222 357
Q ss_pred HHHHhcCCeE
Q 023543 244 LEAAMKDFVI 253 (281)
Q Consensus 244 l~~~~~~f~v 253 (281)
+..+...|..
T Consensus 149 ~~~l~~~F~~ 158 (181)
T PF01728_consen 149 IYLLKRCFSK 158 (181)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhCCeE
Confidence 7777777763
No 234
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.35 E-value=0.0038 Score=55.58 Aligned_cols=135 Identities=19% Similarity=0.050 Sum_probs=79.9
Q ss_pred CCCeEEEECCCcCHHHHHHHHcCCEEEEEech-hHHHHHHHHHHHhhcC------CC-----------------------
Q 023543 122 HGKKIVELGSGCGLVGCIAALLGAQVILTDLP-DRLRLLKKNIENNLRH------GD----------------------- 171 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~~-~~l~~~~~N~~~n~~~------~~----------------------- 171 (281)
.+.+||==|||.|.++.-+|++|..|.+.|.+ -|+-.. |.-.|... +-
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s--~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLAS--NFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHH--HHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 45699999999999999999999999999995 453222 22223211 00
Q ss_pred --------CCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeC----h--
Q 023543 172 --------LRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRN----D-- 237 (281)
Q Consensus 172 --------~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~----~-- 237 (281)
...+......|+.+..........||.|+.+-.|=....+-..++++.++|||||..+=.++... .
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~ 213 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSI 213 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCCC
Confidence 00011111111111111111125899999884443356688899999999999997665554422 1
Q ss_pred -------hHHHHHHHHHhc-CCeEEEEec
Q 023543 238 -------SVLEYFLEAAMK-DFVIGRVEQ 258 (281)
Q Consensus 238 -------~~~~~fl~~~~~-~f~v~~i~~ 258 (281)
-..+.....+.. ||++..-+.
T Consensus 214 ~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 214 PNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 123444555543 898765443
No 235
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.35 E-value=0.0014 Score=57.80 Aligned_cols=93 Identities=20% Similarity=0.290 Sum_probs=62.3
Q ss_pred CceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCC
Q 023543 96 GSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRG 174 (281)
Q Consensus 96 G~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~ 174 (281)
|-.+-.-..++...+... ..-++..|||+|-|||.+...+...|++|+++++ +.|+..+++...---.. +
T Consensus 37 GQHilkNp~v~~~I~~ka-----~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~----~ 107 (315)
T KOG0820|consen 37 GQHILKNPLVIDQIVEKA-----DLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKS----G 107 (315)
T ss_pred chhhhcCHHHHHHHHhcc-----CCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCcc----c
Confidence 444444455555554432 2356789999999999999999999999999999 88988887766543322 4
Q ss_pred ceEEEEEecCCCCCCCcCCCCCcEEEEc
Q 023543 175 SAVVTELTWGDDPDQDLIQPLPDYVLGS 202 (281)
Q Consensus 175 ~i~~~~l~w~~~~~~~~~~~~fD~Iia~ 202 (281)
..++...| ....+ .+.||.+|++
T Consensus 108 kLqV~~gD---~lK~d--~P~fd~cVsN 130 (315)
T KOG0820|consen 108 KLQVLHGD---FLKTD--LPRFDGCVSN 130 (315)
T ss_pred eeeEEecc---cccCC--Ccccceeecc
Confidence 55555533 23322 2567777763
No 236
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.31 E-value=0.0017 Score=58.25 Aligned_cols=104 Identities=11% Similarity=0.082 Sum_probs=69.0
Q ss_pred CeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 124 KKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
++||-||-|.|...-.+.+.. .+++++|+ +++++++++-+..-..... ..++.+..-|-.+... . ...+||+||
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~-dpRv~i~i~Dg~~~v~-~-~~~~fDvIi 154 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGAD-DPRVEIIIDDGVEFLR-D-CEEKFDVII 154 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccC-CCceEEEeccHHHHHH-h-CCCcCCEEE
Confidence 699999999998888888865 47999999 8889999976554321111 2455555433111111 1 123799988
Q ss_pred E--ccccCCCC---cHHHHHHHHHHhhCCCcEEEEE
Q 023543 201 G--SDVIYSEG---AVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 201 a--~d~iy~~~---~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
. .|.. -+. .-..+.+.++++|+++|+++.-
T Consensus 155 ~D~tdp~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 155 VDSTDPV-GPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EcCCCCC-CcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 6 2221 110 1378999999999999987554
No 237
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.27 E-value=0.023 Score=49.00 Aligned_cols=150 Identities=12% Similarity=0.140 Sum_probs=82.4
Q ss_pred cCceecch--HHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHH-cC--CEEEEEec-hhHHHHHHHHHHHhhc
Q 023543 95 TGSVMWDS--GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAAL-LG--AQVILTDL-PDRLRLLKKNIENNLR 168 (281)
Q Consensus 95 tG~~~W~~--s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~-~g--~~V~~tD~-~~~l~~~~~N~~~n~~ 168 (281)
.+.|+|+- |.+.|..+... + +....+|.+||=||+.+|..--.++. -| ..|++++. +...+.+-.-++..
T Consensus 46 ~eYR~W~P~RSKLaAai~~Gl-~-~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R-- 121 (229)
T PF01269_consen 46 VEYRVWNPFRSKLAAAILKGL-E-NIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR-- 121 (229)
T ss_dssp EEEEEE-TTT-HHHHHHHTT--S---S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--
T ss_pred cceeecCchhhHHHHHHHcCc-c-ccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--
Confidence 36788876 55555554432 1 12245789999999999976555554 34 46999999 65544333222221
Q ss_pred CCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeCh-------hHHH
Q 023543 169 HGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRND-------SVLE 241 (281)
Q Consensus 169 ~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~-------~~~~ 241 (281)
.|+-..--|-..+..-...-+..|+|. +|+- .+...+-++......||+||.++++-..|.- .++.
T Consensus 122 -----~NIiPIl~DAr~P~~Y~~lv~~VDvI~-~DVa-Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~ 194 (229)
T PF01269_consen 122 -----PNIIPILEDARHPEKYRMLVEMVDVIF-QDVA-QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFA 194 (229)
T ss_dssp -----TTEEEEES-TTSGGGGTTTS--EEEEE-EE-S-STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHH
T ss_pred -----CceeeeeccCCChHHhhcccccccEEE-ecCC-ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHH
Confidence 244434323221111011124667554 4544 4677788888888999999999998776532 2344
Q ss_pred HHHHHHhc-CCeEEE
Q 023543 242 YFLEAAMK-DFVIGR 255 (281)
Q Consensus 242 ~fl~~~~~-~f~v~~ 255 (281)
.=.+.+++ +|++..
T Consensus 195 ~e~~~L~~~~~~~~e 209 (229)
T PF01269_consen 195 EEVKKLKEEGFKPLE 209 (229)
T ss_dssp HHHHHHHCTTCEEEE
T ss_pred HHHHHHHHcCCChhe
Confidence 44555554 788643
No 238
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.25 E-value=0.0022 Score=56.66 Aligned_cols=76 Identities=18% Similarity=0.194 Sum_probs=52.5
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCC-CCcE
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQP-LPDY 198 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~-~fD~ 198 (281)
.++.+|||+|+|.|.+...+++.+.+|+++++ +.++..+++.... ..++.+..-| .....+..- .++.
T Consensus 29 ~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~-------~~n~~vi~~D---aLk~d~~~l~~~~~ 98 (259)
T COG0030 29 SPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAP-------YDNLTVINGD---ALKFDFPSLAQPYK 98 (259)
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhccc-------ccceEEEeCc---hhcCcchhhcCCCE
Confidence 34789999999999999999999999999999 7778888776541 1355555533 222222211 4666
Q ss_pred EEEccccCC
Q 023543 199 VLGSDVIYS 207 (281)
Q Consensus 199 Iia~d~iy~ 207 (281)
|+++=. |+
T Consensus 99 vVaNlP-Y~ 106 (259)
T COG0030 99 VVANLP-YN 106 (259)
T ss_pred EEEcCC-Cc
Confidence 666544 44
No 239
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.25 E-value=0.0019 Score=58.08 Aligned_cols=147 Identities=20% Similarity=0.226 Sum_probs=93.7
Q ss_pred ceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHH-cC--CEEEEEec-hhHHHHHHHHHHHhhcCCCC
Q 023543 97 SVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAAL-LG--AQVILTDL-PDRLRLLKKNIENNLRHGDL 172 (281)
Q Consensus 97 ~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~-~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~ 172 (281)
..+++.+-.++..+.. ..+|.+|||++||.|-=+..++. .+ ..|++.|+ ...+..++.|+.+.+..
T Consensus 67 ~~vQd~sS~l~~~~L~-------~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~--- 136 (283)
T PF01189_consen 67 FYVQDESSQLVALALD-------PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF--- 136 (283)
T ss_dssp EEEHHHHHHHHHHHHT-------TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S---
T ss_pred EEeccccccccccccc-------ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc---
Confidence 3456666555555443 35788999999999966666655 33 47999999 78899999999998876
Q ss_pred CCceEEEEEecCCCCCCCcCCCCCcEEEE------ccccCCC----------------CcHHHHHHHHHHhh----CCCc
Q 023543 173 RGSAVVTELTWGDDPDQDLIQPLPDYVLG------SDVIYSE----------------GAVGDLLDTLLQLC----GTQT 226 (281)
Q Consensus 173 ~~~i~~~~l~w~~~~~~~~~~~~fD~Iia------~d~iy~~----------------~~~~~ll~~l~~ll----~~~g 226 (281)
++.+...|.... ........||.|+. ..++... .....+++...+++ +|||
T Consensus 137 --~v~~~~~D~~~~-~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG 213 (283)
T PF01189_consen 137 --NVIVINADARKL-DPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGG 213 (283)
T ss_dssp --SEEEEESHHHHH-HHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEE
T ss_pred --eEEEEeeccccc-cccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCC
Confidence 565555332111 00112235898886 1122221 11566888888999 9999
Q ss_pred EEEEE-Ee---eeChhHHHHHHHHHhcCCeEEEEe
Q 023543 227 TIFLA-GE---LRNDSVLEYFLEAAMKDFVIGRVE 257 (281)
Q Consensus 227 ~~~l~-~~---~r~~~~~~~fl~~~~~~f~v~~i~ 257 (281)
+++.+ +. .-+....+.|++.. ..|.+..+.
T Consensus 214 ~lvYsTCS~~~eENE~vV~~fl~~~-~~~~l~~~~ 247 (283)
T PF01189_consen 214 RLVYSTCSLSPEENEEVVEKFLKRH-PDFELVPIP 247 (283)
T ss_dssp EEEEEESHHHGGGTHHHHHHHHHHS-TSEEEECCE
T ss_pred eEEEEeccHHHHHHHHHHHHHHHhC-CCcEEEecc
Confidence 86555 33 34566778787653 356655544
No 240
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.24 E-value=0.0013 Score=58.52 Aligned_cols=108 Identities=25% Similarity=0.342 Sum_probs=67.1
Q ss_pred HHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEE
Q 023543 103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTEL 181 (281)
Q Consensus 103 s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l 181 (281)
..-+++.+.+.++ ..++..|||+|+|+|.++..++..+.+|+++|+ +...+.+++....+ .++.+..-
T Consensus 15 ~~~~~~~Iv~~~~----~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~-------~~~~vi~~ 83 (262)
T PF00398_consen 15 DPNIADKIVDALD----LSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASN-------PNVEVING 83 (262)
T ss_dssp HHHHHHHHHHHHT----CGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTC-------SSEEEEES
T ss_pred CHHHHHHHHHhcC----CCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhc-------ccceeeec
Confidence 3344555554432 237889999999999999999999999999999 77888888765522 46777776
Q ss_pred ecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCC
Q 023543 182 TWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGT 224 (281)
Q Consensus 182 ~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~ 224 (281)
|..+.............|+++ .-|+ .-.+++..+...-+.
T Consensus 84 D~l~~~~~~~~~~~~~~vv~N-lPy~--is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 84 DFLKWDLYDLLKNQPLLVVGN-LPYN--ISSPILRKLLELYRF 123 (262)
T ss_dssp -TTTSCGGGHCSSSEEEEEEE-ETGT--GHHHHHHHHHHHGGG
T ss_pred chhccccHHhhcCCceEEEEE-eccc--chHHHHHHHhhcccc
Confidence 544322111111233456665 5553 234455554443333
No 241
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.18 E-value=0.0034 Score=54.12 Aligned_cols=106 Identities=18% Similarity=0.167 Sum_probs=74.9
Q ss_pred ccCCCeEEEECCCcCHHHHHHHH---cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCc---C
Q 023543 120 LLHGKKIVELGSGCGLVGCIAAL---LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDL---I 192 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~---~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~---~ 192 (281)
....+++||||.=||.-++..|. .+.+|+++|+ ++..+...+-++..+.. .++.+....-.+..+..+ .
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~----~KI~~i~g~a~esLd~l~~~~~ 146 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD----HKITFIEGPALESLDELLADGE 146 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc----ceeeeeecchhhhHHHHHhcCC
Confidence 46889999999999988877776 3668999999 77888888888887776 567777644332222222 2
Q ss_pred CCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 193 QPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 193 ~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
...||++..- .+..........+-+++++||++++-.
T Consensus 147 ~~tfDfaFvD---adK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 147 SGTFDFAFVD---ADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred CCceeEEEEc---cchHHHHHHHHHHHhhcccccEEEEec
Confidence 3568987641 123334477788888999999877654
No 242
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.10 E-value=0.0046 Score=56.51 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=68.1
Q ss_pred cCCCeEEEECCCcCH-HHHHHHH---c--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEE--ecCCCCC---
Q 023543 121 LHGKKIVELGSGCGL-VGCIAAL---L--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTEL--TWGDDPD--- 188 (281)
Q Consensus 121 ~~~~~VLELGcGtG~-~~i~~a~---~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l--~w~~~~~--- 188 (281)
.++..++|||||.|. ..+.+.. . ...++++|+ .++|+.+..++..... ..+.+..+ ++.+...
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~-----p~l~v~~l~gdy~~~l~~l~ 149 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF-----SHVRCAGLLGTYDDGLAWLK 149 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC-----CCeEEEEEEecHHHHHhhcc
Confidence 356689999999995 3333322 2 356999999 6789988888873222 23544332 3322211
Q ss_pred CCcCCCCCcEEEEcc-ccCC--CCcHHHHHHHHHH-hhCCCcEEEEEEee
Q 023543 189 QDLIQPLPDYVLGSD-VIYS--EGAVGDLLDTLLQ-LCGTQTTIFLAGEL 234 (281)
Q Consensus 189 ~~~~~~~fD~Iia~d-~iy~--~~~~~~ll~~l~~-ll~~~g~~~l~~~~ 234 (281)
.........+++... .+-| +.....+++.+++ .|+|++.+++..-.
T Consensus 150 ~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~ 199 (319)
T TIGR03439 150 RPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDG 199 (319)
T ss_pred cccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCC
Confidence 000112346666543 5544 5667789999999 99999998887543
No 243
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.06 E-value=0.031 Score=48.03 Aligned_cols=120 Identities=13% Similarity=0.105 Sum_probs=81.8
Q ss_pred CCCeEEEECCCcCHHHHHHHHcCC--EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAALLGA--QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g~--~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.+.++.|+||--|.+++.+-+.+. .+++.|+ +..++.+.+|+..|++. .++.+...| .+...-.+..+|+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~----~~i~vr~~d---gl~~l~~~d~~d~ 88 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLS----ERIDVRLGD---GLAVLELEDEIDV 88 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCc----ceEEEeccC---CccccCccCCcCE
Confidence 566799999999999999998654 5999999 78899999999999876 577777754 2333334457899
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhcCCeE
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMKDFVI 253 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~v 253 (281)
|+-+.+= -..+..+++.-...++.--++ +-++..+...++.|+.. .+|.+
T Consensus 89 ivIAGMG--G~lI~~ILee~~~~l~~~~rl-ILQPn~~~~~LR~~L~~--~~~~I 138 (226)
T COG2384 89 IVIAGMG--GTLIREILEEGKEKLKGVERL-ILQPNIHTYELREWLSA--NSYEI 138 (226)
T ss_pred EEEeCCc--HHHHHHHHHHhhhhhcCcceE-EECCCCCHHHHHHHHHh--CCcee
Confidence 8877664 222344555555555443333 44555566667777744 45553
No 244
>PRK10742 putative methyltransferase; Provisional
Probab=97.02 E-value=0.0033 Score=55.14 Aligned_cols=86 Identities=17% Similarity=0.258 Sum_probs=58.6
Q ss_pred CCC--eEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCC----CCCceEEEEEecCCCCCCCcCCC
Q 023543 122 HGK--KIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGD----LRGSAVVTELTWGDDPDQDLIQP 194 (281)
Q Consensus 122 ~~~--~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~----~~~~i~~~~l~w~~~~~~~~~~~ 194 (281)
+|. +|||+=+|+|..|+.++.+|++|+++|. +.+..+++.|++....... ...++.+..-+-.+.... ...
T Consensus 86 ~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~--~~~ 163 (250)
T PRK10742 86 GDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD--ITP 163 (250)
T ss_pred CCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh--CCC
Confidence 455 8999999999999999999999999999 7788899999887421100 012455544332111111 123
Q ss_pred CCcEEEEccccCCCCc
Q 023543 195 LPDYVLGSDVIYSEGA 210 (281)
Q Consensus 195 ~fD~Iia~d~iy~~~~ 210 (281)
+||+|. .|.+|....
T Consensus 164 ~fDVVY-lDPMfp~~~ 178 (250)
T PRK10742 164 RPQVVY-LDPMFPHKQ 178 (250)
T ss_pred CCcEEE-ECCCCCCCc
Confidence 699766 788887544
No 245
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=96.96 E-value=0.0018 Score=58.44 Aligned_cols=45 Identities=18% Similarity=0.067 Sum_probs=38.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcC---CEEEEEec-hhHHHHHHHHHHH
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLG---AQVILTDL-PDRLRLLKKNIEN 165 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g---~~V~~tD~-~~~l~~~~~N~~~ 165 (281)
.++..+||.+||.|--+..++... .+|+++|. +++++.+++++..
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~ 66 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP 66 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc
Confidence 457899999999999888888753 58999999 8999999987654
No 246
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.93 E-value=0.01 Score=52.97 Aligned_cols=102 Identities=16% Similarity=0.136 Sum_probs=62.3
Q ss_pred CeEEEECCCc-CHHHHHHHHc---CCEEEEEec-hhHHHHHHHHHH-HhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 124 KKIVELGSGC-GLVGCIAALL---GAQVILTDL-PDRLRLLKKNIE-NNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 124 ~~VLELGcGt-G~~~i~~a~~---g~~V~~tD~-~~~l~~~~~N~~-~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
++|+=||||. -+.++.+++. +..|+++|+ +++++.+++-+. ..++. .++.+...|-.+.. ..-..||
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~----~~m~f~~~d~~~~~---~dl~~~D 194 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLS----KRMSFITADVLDVT---YDLKEYD 194 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-----SSEEEEES-GGGG----GG----S
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccccc----CCeEEEecchhccc---cccccCC
Confidence 5999999996 7888888863 457999999 889999988776 44554 46777775532211 1125799
Q ss_pred EEEEccccCC-CCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 198 YVLGSDVIYS-EGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 198 ~Iia~d~iy~-~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+|+-+..+.. ...-..++..+.+.++||+.+++-.
T Consensus 195 vV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 195 VVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp EEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred EEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 9998888763 5678999999999999999877653
No 247
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.89 E-value=0.011 Score=47.38 Aligned_cols=108 Identities=13% Similarity=0.087 Sum_probs=63.9
Q ss_pred EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEcc---------ccCCCCcHHHHH
Q 023543 146 QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSD---------VIYSEGAVGDLL 215 (281)
Q Consensus 146 ~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d---------~iy~~~~~~~ll 215 (281)
+|++.|+ +++++.++++++.++.. .++.+..-.=.+ .+..+...++|.++.+- ++-.++.--..+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~----~~v~li~~sHe~-l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al 75 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLE----DRVTLILDSHEN-LDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKAL 75 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-G----SGEEEEES-GGG-GGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCC----CcEEEEECCHHH-HHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHH
Confidence 6899999 89999999999998775 356655532111 11112223778777532 122233345667
Q ss_pred HHHHHhhCCCcEEEEEEee-eCh-----hHHHHHHHHHh-cCCeEEEEec
Q 023543 216 DTLLQLCGTQTTIFLAGEL-RND-----SVLEYFLEAAM-KDFVIGRVEQ 258 (281)
Q Consensus 216 ~~l~~ll~~~g~~~l~~~~-r~~-----~~~~~fl~~~~-~~f~v~~i~~ 258 (281)
+.+.++|++||++.++... +.. ..+..|+..+. +.|.|.+...
T Consensus 76 ~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~ 125 (140)
T PF06962_consen 76 EAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQF 125 (140)
T ss_dssp HHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEE
T ss_pred HHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEc
Confidence 7777889999987766544 332 24566776665 4788877754
No 248
>KOG2730 consensus Methylase [General function prediction only]
Probab=96.71 E-value=0.0015 Score=55.91 Aligned_cols=62 Identities=23% Similarity=0.139 Sum_probs=55.1
Q ss_pred CCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCC
Q 023543 122 HGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDP 187 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~ 187 (281)
....|+|.-||.|-..+-.|..++.|+++|+ +.-+..|+.|++-.|+. +++.+.+.||-+.+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~----~rItFI~GD~ld~~ 156 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVP----DRITFICGDFLDLA 156 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCC----ceeEEEechHHHHH
Confidence 5568999999999889999999999999999 77799999999999987 68999998886543
No 249
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.70 E-value=0.00049 Score=58.35 Aligned_cols=94 Identities=20% Similarity=0.175 Sum_probs=66.2
Q ss_pred CCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 122 HGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
...++||||+|-|-+...++..--+|++|+. ..|...+++. +. ++ ...++|.+ .+-+||+|.
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk----~y------nV-l~~~ew~~------t~~k~dli~ 174 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK----NY------NV-LTEIEWLQ------TDVKLDLIL 174 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhc----CC------ce-eeehhhhh------cCceeehHH
Confidence 4579999999999888877765556999998 5665555421 11 11 23445542 234789999
Q ss_pred EccccCCCCcHHHHHHHHHHhhCC-CcEEEEEE
Q 023543 201 GSDVIYSEGAVGDLLDTLLQLCGT-QTTIFLAG 232 (281)
Q Consensus 201 a~d~iy~~~~~~~ll~~l~~ll~~-~g~~~l~~ 232 (281)
|-.++=.-.+.-.|++-++..+.| +|+++++-
T Consensus 175 clNlLDRc~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 175 CLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HHHHHHhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence 877765556667899999999998 78877663
No 250
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=96.69 E-value=0.049 Score=50.97 Aligned_cols=106 Identities=23% Similarity=0.277 Sum_probs=73.2
Q ss_pred cCCCeEEEECCCcCH-HHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGCGL-VGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGtG~-~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.+|.+|||+.|-.|- ....++.+. ..|++.|. ...++.++.|+.+.|+. +..+..+|-.......+.. +|
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-----ntiv~n~D~~ef~~~~~~~-~f 313 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-----NTIVSNYDGREFPEKEFPG-SF 313 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-----ceEEEccCcccccccccCc-cc
Confidence 578899999999873 333444433 35999999 66799999999999976 5556666633222233333 79
Q ss_pred cEEEE----cc--ccCCCC----------------cHHHHHHHHHHhhCCCcEEEEEE
Q 023543 197 DYVLG----SD--VIYSEG----------------AVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 197 D~Iia----~d--~iy~~~----------------~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
|-|+. +. +++.+. ....|+....+++++||+++.+.
T Consensus 314 DRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 314 DRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred ceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 99884 33 454432 25678888888999999876654
No 251
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.58 E-value=0.21 Score=42.54 Aligned_cols=143 Identities=17% Similarity=0.183 Sum_probs=83.3
Q ss_pred ceecch--HHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHH-cC-CEEEEEec-hhHHHHHHHHH-HHhhcCC
Q 023543 97 SVMWDS--GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAAL-LG-AQVILTDL-PDRLRLLKKNI-ENNLRHG 170 (281)
Q Consensus 97 ~~~W~~--s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~-~g-~~V~~tD~-~~~l~~~~~N~-~~n~~~~ 170 (281)
.+.|+. |.+.|..|... . +...-+|.+||=||+-+|..--..+. .| ..|++++. +.+.+-+-.-+ +++
T Consensus 51 YR~Wnp~RSKLaAaIl~Gl-~-~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~---- 124 (231)
T COG1889 51 YREWNPRRSKLAAAILKGL-K-NFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRP---- 124 (231)
T ss_pred eeeeCcchhHHHHHHHcCc-c-cCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCC----
Confidence 578876 56666666543 1 12245789999999999965544454 44 45999999 66543332222 222
Q ss_pred CCCCceEEEEEecCCCCCCCcCCCCC-cEEEEccccCC----CCcHHHHHHHHHHhhCCCcEEEEEEeeeCh-------h
Q 023543 171 DLRGSAVVTELTWGDDPDQDLIQPLP-DYVLGSDVIYS----EGAVGDLLDTLLQLCGTQTTIFLAGELRND-------S 238 (281)
Q Consensus 171 ~~~~~i~~~~l~w~~~~~~~~~~~~f-D~Iia~d~iy~----~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~-------~ 238 (281)
|+-..--|... ..+| -+|=.-|++|. +.+.+-+.......|+++|.++++-..|.- .
T Consensus 125 ----Ni~PIL~DA~~-------P~~Y~~~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~ 193 (231)
T COG1889 125 ----NIIPILEDARK-------PEKYRHLVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEE 193 (231)
T ss_pred ----CceeeecccCC-------cHHhhhhcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHH
Confidence 22222222111 1122 12222344443 566777888889999999999999888762 2
Q ss_pred HHHHHHHHHhc-CCeEEEE
Q 023543 239 VLEYFLEAAMK-DFVIGRV 256 (281)
Q Consensus 239 ~~~~fl~~~~~-~f~v~~i 256 (281)
+++.-.+.+.. +|++...
T Consensus 194 vf~~ev~kL~~~~f~i~e~ 212 (231)
T COG1889 194 VFKDEVEKLEEGGFEILEV 212 (231)
T ss_pred HHHHHHHHHHhcCceeeEE
Confidence 34433444543 6775544
No 252
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.58 E-value=0.053 Score=50.00 Aligned_cols=171 Identities=13% Similarity=0.051 Sum_probs=98.7
Q ss_pred ceEEEecCCceEEEEeCCCCCCCCCCcCceecchHHHHHHHHhhhhccCccc-cCCCeEEEECCCcCHHHHHHHHcC-C-
Q 023543 69 LNLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLL-LHGKKIVELGSGCGLVGCIAALLG-A- 145 (281)
Q Consensus 69 ~~~~~~~~g~~l~i~q~~~~~~~~g~tG~~~W~~s~~la~~l~~~~~~~~~~-~~~~~VLELGcGtG~~~i~~a~~g-~- 145 (281)
..+-++-.|.++++..+.+..+. +..=-+|-+..+-..-.. ..-.+||=||-|-|+..-.+.+.. .
T Consensus 246 Q~iVvTr~g~d~rLYldG~LQfs-----------TrDe~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~ 314 (508)
T COG4262 246 QRIVVTRRGDDLRLYLDGGLQFS-----------TRDEYRYHESLVYPALSSVRGARSVLVLGGGDGLALRELLKYPQVE 314 (508)
T ss_pred ceEEEEEecCceEEEEcCceeee-----------echhhhhhheeeecccccccccceEEEEcCCchHHHHHHHhCCCcc
Confidence 44555566888888887765321 111112222211000011 234699999999999888887743 3
Q ss_pred EEEEEec-hhHHHHHHHHHHHhhcCCC--CCCceEEEEEecCCCCCCCcCCCCCcEEEEc--cc-------cCCCCcHHH
Q 023543 146 QVILTDL-PDRLRLLKKNIENNLRHGD--LRGSAVVTELTWGDDPDQDLIQPLPDYVLGS--DV-------IYSEGAVGD 213 (281)
Q Consensus 146 ~V~~tD~-~~~l~~~~~N~~~n~~~~~--~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~--d~-------iy~~~~~~~ 213 (281)
+|+.+|+ |+|++.+++|......+.. ...++++..-|-.+.... ....||+||-- |. +|. .+
T Consensus 315 qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~--a~~~fD~vIVDl~DP~tps~~rlYS----~e 388 (508)
T COG4262 315 QITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRT--AADMFDVVIVDLPDPSTPSIGRLYS----VE 388 (508)
T ss_pred eEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHh--hcccccEEEEeCCCCCCcchhhhhh----HH
Confidence 6999999 9999999977544332211 124556555432221111 23479988851 11 222 56
Q ss_pred HHHHHHHhhCCCcEEEEEEeeeC--hhHHHHHHHHHh-cCCeEEEE
Q 023543 214 LLDTLLQLCGTQTTIFLAGELRN--DSVLEYFLEAAM-KDFVIGRV 256 (281)
Q Consensus 214 ll~~l~~ll~~~g~~~l~~~~r~--~~~~~~fl~~~~-~~f~v~~i 256 (281)
+...+++.++++|.+++-...-. +..+-.....++ .||.++..
T Consensus 389 FY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~Py 434 (508)
T COG4262 389 FYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPY 434 (508)
T ss_pred HHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCcceeeee
Confidence 78888999999999876543322 333333344555 37776654
No 253
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.41 E-value=0.0057 Score=55.36 Aligned_cols=102 Identities=25% Similarity=0.383 Sum_probs=64.6
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
..|.+||=+|||. |+..+..|+ .|+ +|+.+|. +..++.|++ +-.-......... ..-+..+.....+....|
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~~~~~~~~~---~~~~~~~~v~~~~g~~~~ 243 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATVTDPSSHKS---SPQELAELVEKALGKKQP 243 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeEEeeccccc---cHHHHHHHHHhhccccCC
Confidence 4688999999996 988888887 677 6999999 888999987 3221111000000 000000000111222447
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
|+.+.|.-. +.-+++.-..++.+|.+.++.
T Consensus 244 d~~~dCsG~------~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 244 DVTFDCSGA------EVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred CeEEEccCc------hHHHHHHHHHhccCCEEEEec
Confidence 877776665 888888889999999977775
No 254
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.38 E-value=0.0077 Score=56.34 Aligned_cols=103 Identities=20% Similarity=0.205 Sum_probs=70.6
Q ss_pred CCeEEEECCCcCHHHHHHHHc--C-CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 123 GKKIVELGSGCGLVGCIAALL--G-AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~~--g-~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
+-+|||-=||||+=|+-.++- + .+|++-|+ +++++.+++|++.|++.. +++.+...|-..... .....||+
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~---~~~~v~~~DAn~ll~--~~~~~fD~ 124 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLED---ERIEVSNMDANVLLY--SRQERFDV 124 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SG---CCEEEEES-HHHHHC--HSTT-EEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccC---ceEEEehhhHHHHhh--hccccCCE
Confidence 458999999999999988875 3 36999999 889999999999999872 256666644321110 13567885
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
| --|+. ....+++....+.++.||.+.++...
T Consensus 125 I-DlDPf---GSp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 125 I-DLDPF---GSPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp E-EE--S---S--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred E-EeCCC---CCccHhHHHHHHHhhcCCEEEEeccc
Confidence 4 34443 34578999999999999999998754
No 255
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.33 E-value=0.1 Score=46.72 Aligned_cols=40 Identities=15% Similarity=0.198 Sum_probs=34.8
Q ss_pred eEEEECCCcCHHHHHHHHcCCE-EEEEec-hhHHHHHHHHHH
Q 023543 125 KIVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNIE 164 (281)
Q Consensus 125 ~VLELGcGtG~~~i~~a~~g~~-V~~tD~-~~~l~~~~~N~~ 164 (281)
+|+||.||+|..++.+...|.+ |.++|+ +.+++..+.|..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~ 43 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP 43 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC
Confidence 6999999999888888888887 789999 788888888764
No 256
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.14 E-value=0.025 Score=52.11 Aligned_cols=99 Identities=23% Similarity=0.309 Sum_probs=70.4
Q ss_pred CCeEEEECCCcCHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCC--CCCc
Q 023543 123 GKKIVELGSGCGLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQ--PLPD 197 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~--~~fD 197 (281)
.++|||-=||||+=||-.|. .+. +|++-|+ +++++++++|++.|... +..+.+-|- ...+.. ..||
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~-----~~~v~n~DA----N~lm~~~~~~fd 123 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGE-----DAEVINKDA----NALLHELHRAFD 123 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcc-----cceeecchH----HHHHHhcCCCcc
Confidence 78999999999999998887 455 7999999 99999999999999322 233333221 111111 4677
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
+ |--|++ ....+++.+..+..+.+|.+-++...
T Consensus 124 ~-IDiDPF---GSPaPFlDaA~~s~~~~G~l~vTATD 156 (380)
T COG1867 124 V-IDIDPF---GSPAPFLDAALRSVRRGGLLCVTATD 156 (380)
T ss_pred E-EecCCC---CCCchHHHHHHHHhhcCCEEEEEecc
Confidence 4 334443 33467888888888999988887653
No 257
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.11 E-value=0.02 Score=53.27 Aligned_cols=103 Identities=12% Similarity=0.056 Sum_probs=71.5
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc-CCEEEEEec-hhHHHHHHH-HHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL-GAQVILTDL-PDRLRLLKK-NIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~-g~~V~~tD~-~~~l~~~~~-N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.++..++|+|||.|-+....+.. ++++++.|+ +.-+..... ++..+ +. .+..+ ...|- ...++.+..||
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~-l~----~k~~~-~~~~~--~~~~fedn~fd 180 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAY-LD----NKCNF-VVADF--GKMPFEDNTFD 180 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHH-hh----hhcce-ehhhh--hcCCCCccccC
Confidence 45668999999999998888875 468999999 443332222 22222 11 11222 22221 12234567899
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
.+-+.|+.-+......+++.+.+.++|||.....
T Consensus 181 ~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 181 GVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred cEEEEeecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 9999999999999999999999999999987543
No 258
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.08 E-value=0.2 Score=44.48 Aligned_cols=103 Identities=13% Similarity=0.054 Sum_probs=65.3
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcC---CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLG---AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g---~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
..+|.+|||-|.|+|-++.++++-- .+++-.|+ ....+.+++-.+..++. +++.+..-|....-- ......
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~----~~vt~~hrDVc~~GF-~~ks~~ 177 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIG----DNVTVTHRDVCGSGF-LIKSLK 177 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCC----cceEEEEeecccCCc-cccccc
Confidence 3579999999999999999999843 36999999 66778888888888865 677777655432110 011233
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+|.|. -|+ ......+..+...++.+|.-+++.
T Consensus 178 aDaVF-LDl----PaPw~AiPha~~~lk~~g~r~csF 209 (314)
T KOG2915|consen 178 ADAVF-LDL----PAPWEAIPHAAKILKDEGGRLCSF 209 (314)
T ss_pred cceEE-EcC----CChhhhhhhhHHHhhhcCceEEec
Confidence 45322 233 233334444455777766544443
No 259
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=96.06 E-value=0.028 Score=51.44 Aligned_cols=94 Identities=14% Similarity=0.037 Sum_probs=65.0
Q ss_pred CeEEEECCCcCHHHHHHHHcCCEEEEEec--hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEE
Q 023543 124 KKIVELGSGCGLVGCIAALLGAQVILTDL--PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLG 201 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~~g~~V~~tD~--~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia 201 (281)
...+|+|.|.|.+.-.+...-++|-+++. +.+++.+. +.. -++. ... ++.+.. -|+-|+|+.
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~-~~~-~gV~--------~v~---gdmfq~---~P~~daI~m 242 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAP-YLA-PGVE--------HVA---GDMFQD---TPKGDAIWM 242 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhh-hhc-CCcc--------eec---cccccc---CCCcCeEEE
Confidence 68999999999765554445556777777 44444443 332 2221 111 333332 256789999
Q ss_pred ccccCCC--CcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 202 SDVIYSE--GAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 202 ~d~iy~~--~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
..+++++ ++..++++.+++.|+|+|.+++...
T Consensus 243 kWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 243 KWILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred EeecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 9999995 5588999999999999999988765
No 260
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.97 E-value=0.00069 Score=51.30 Aligned_cols=98 Identities=17% Similarity=0.013 Sum_probs=35.1
Q ss_pred EEECCCcCHHHHHHHH---cC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 127 VELGSGCGLVGCIAAL---LG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 127 LELGcGtG~~~i~~a~---~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
||+|+..|..++.+++ .. .+++++|. +. .+..++++++.+.. .++.+..-+-.+... .+...+||+|.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~----~~~~~~~g~s~~~l~-~~~~~~~dli~ 74 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLS----DRVEFIQGDSPDFLP-SLPDGPIDLIF 74 (106)
T ss_dssp --------------------------EEEESS-------------GGG-----BTEEEEES-THHHHH-HHHH--EEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCC----CeEEEEEcCcHHHHH-HcCCCCEEEEE
Confidence 7999999987776654 22 26999999 54 44455555544443 356666533211111 12236788766
Q ss_pred EccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 201 GSDVIYSEGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 201 a~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
. |.-+..+....-++.+..+++|+|++++-
T Consensus 75 i-Dg~H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 75 I-DGDHSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp E-ES---HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred E-CCCCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 3 44444455666777777888999987763
No 261
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=95.59 E-value=0.0071 Score=56.50 Aligned_cols=83 Identities=23% Similarity=0.293 Sum_probs=62.8
Q ss_pred CcCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCC
Q 023543 94 VTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDL 172 (281)
Q Consensus 94 ~tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~ 172 (281)
.+|-+.|.+ .+..+.-.- ......|..|.|+-||.|-.++.+++.++.|++-|. +++++.++.|+..|.+.
T Consensus 226 DfskVYWns-RL~~Eherl----sg~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~--- 297 (495)
T KOG2078|consen 226 DFSKVYWNS-RLSHEHERL----SGLFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVD--- 297 (495)
T ss_pred ecceEEeec-cchhHHHHH----hhccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccc---
Confidence 357778984 333332111 112346889999999999999999999999999999 99999999999999887
Q ss_pred CCceEEEEEecC
Q 023543 173 RGSAVVTELTWG 184 (281)
Q Consensus 173 ~~~i~~~~l~w~ 184 (281)
..++.+.++|-.
T Consensus 298 ~~~iei~Nmda~ 309 (495)
T KOG2078|consen 298 PSAIEIFNMDAK 309 (495)
T ss_pred hhheeeecccHH
Confidence 234777776643
No 262
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.54 E-value=0.12 Score=50.23 Aligned_cols=105 Identities=18% Similarity=0.106 Sum_probs=62.4
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCC-----CCC---
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDD-----PDQ--- 189 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~-----~~~--- 189 (281)
.++.+|+=+|||. |+.++.+|+ +|++|+++|. ++.++.++. .+... -.+....-++... ...
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes----lGA~~---v~i~~~e~~~~~~gya~~~s~~~~ 235 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES----MGAEF---LELDFEEEGGSGDGYAKVMSEEFI 235 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCCeE---EEeccccccccccchhhhcchhHH
Confidence 5688999999996 888887776 7999999999 777777764 22110 0000000000000 000
Q ss_pred -----CcCC--CCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 190 -----DLIQ--PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 190 -----~~~~--~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
.+.+ ..+|+||.+-..-.......+.+...+.++|||.++...
T Consensus 236 ~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 236 KAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 0111 358999887655222222233488888999999876554
No 263
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.54 E-value=0.042 Score=47.62 Aligned_cols=79 Identities=15% Similarity=0.095 Sum_probs=51.8
Q ss_pred CCCeEEEECCCcCHHH-H-HHHHcCCEEEEEec-hhHHHHHHHHHHHh-hcCCCCCCceEEEEEecCCCCCCC-----cC
Q 023543 122 HGKKIVELGSGCGLVG-C-IAALLGAQVILTDL-PDRLRLLKKNIENN-LRHGDLRGSAVVTELTWGDDPDQD-----LI 192 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~-i-~~a~~g~~V~~tD~-~~~l~~~~~N~~~n-~~~~~~~~~i~~~~l~w~~~~~~~-----~~ 192 (281)
++-++||+|.|.-.+- + -....|.+.+++|+ +.+++.|+.++..| ++. ..++...- .+.+.. -.
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~----~~I~lr~q---k~~~~if~giig~ 150 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLE----RAIRLRRQ---KDSDAIFNGIIGK 150 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchh----hheeEEec---cCccccccccccc
Confidence 4568899987754221 1 12235778999999 78899999999999 444 23433321 111111 13
Q ss_pred CCCCcEEEEccccCC
Q 023543 193 QPLPDYVLGSDVIYS 207 (281)
Q Consensus 193 ~~~fD~Iia~d~iy~ 207 (281)
++.||..+|+..+|.
T Consensus 151 nE~yd~tlCNPPFh~ 165 (292)
T COG3129 151 NERYDATLCNPPFHD 165 (292)
T ss_pred cceeeeEecCCCcch
Confidence 678999999888876
No 264
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.54 E-value=0.021 Score=43.50 Aligned_cols=48 Identities=21% Similarity=0.113 Sum_probs=33.9
Q ss_pred HHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec
Q 023543 105 VLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL 152 (281)
Q Consensus 105 ~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~ 152 (281)
.+|.||...........+....+|||||.|++--.+.+-|.+=.++|.
T Consensus 41 aIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~ 88 (112)
T PF07757_consen 41 AIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGYPGWGIDA 88 (112)
T ss_pred HHHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCCCcccccc
Confidence 355666553221111123457999999999999999999999899998
No 265
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.52 E-value=0.019 Score=52.61 Aligned_cols=106 Identities=13% Similarity=0.188 Sum_probs=64.9
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCC---EEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC-C---Cc-
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGA---QVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD-Q---DL- 191 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~---~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~-~---~~- 191 (281)
.+..+++||+|.|.|....++-..-+ .++.++.+.+++..-..+..|-.. ...+|....- . .+
T Consensus 111 dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t---------~~td~r~s~vt~dRl~lp 181 (484)
T COG5459 111 DFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST---------EKTDWRASDVTEDRLSLP 181 (484)
T ss_pred CcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc---------ccCCCCCCccchhccCCC
Confidence 57888999999999864333332222 366666655666555566665332 2244432110 0 11
Q ss_pred CCCCCcEEEEccccCC---CCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 192 IQPLPDYVLGSDVIYS---EGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 192 ~~~~fD~Iia~d~iy~---~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
....|++++..|-+.. +..+...++.+..++.|||.++++...
T Consensus 182 ~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 182 AADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred ccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 1235788887776654 344566888889999999998887653
No 266
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.49 E-value=0.045 Score=46.56 Aligned_cols=54 Identities=24% Similarity=0.218 Sum_probs=40.5
Q ss_pred HHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHH
Q 023543 103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKK 161 (281)
Q Consensus 103 s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~ 161 (281)
-+.|.+.+.... ..+|..|||.-||+|..++++.++|.+.+++|+ ++..++|++
T Consensus 177 P~~l~~~lI~~~-----t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 177 PVELIERLIKAS-----TNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -HHHHHHHHHHH-----S-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhh-----hccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 456666666542 256899999999999999999999999999999 777888764
No 267
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.48 E-value=0.081 Score=50.71 Aligned_cols=98 Identities=13% Similarity=0.157 Sum_probs=61.7
Q ss_pred CeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEc
Q 023543 124 KKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGS 202 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~ 202 (281)
.+|+|..+|.| |.++|.....|..... +..-...-.-+-..|+- -.-.||.+.++. -...||+|-+.
T Consensus 367 RNVMDMnAg~G--GFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLI--------G~yhDWCE~fsT--YPRTYDLlHA~ 434 (506)
T PF03141_consen 367 RNVMDMNAGYG--GFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLI--------GVYHDWCEAFST--YPRTYDLLHAD 434 (506)
T ss_pred eeeeeeccccc--HHHHHhccCCceEEEecccCCCCcchhhhhcccc--------hhccchhhccCC--CCcchhheehh
Confidence 48999999999 5555554443444333 22111111122223332 134588877764 34679999988
Q ss_pred cccCC---CCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 203 DVIYS---EGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 203 d~iy~---~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
.++-. .-.+..++-.+.|+|+|+|.++|-+.
T Consensus 435 ~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 435 GLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred hhhhhhcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 77543 45688999999999999999887543
No 268
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=95.43 E-value=0.075 Score=47.25 Aligned_cols=104 Identities=17% Similarity=0.131 Sum_probs=74.4
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcC--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLG--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.+.|+.|+=+| ---+.|++++.-| .+|..+|+ +..++...+-+++.+.. ++....+|..++.+..+ ..+|
T Consensus 150 DL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~-----~ie~~~~Dlr~plpe~~-~~kF 222 (354)
T COG1568 150 DLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYN-----NIEAFVFDLRNPLPEDL-KRKF 222 (354)
T ss_pred CcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCcc-----chhheeehhcccChHHH-HhhC
Confidence 46889999999 5678888888744 47999999 55688888888888775 67788888766655433 4689
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCC---cEEEEE
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQ---TTIFLA 231 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~---g~~~l~ 231 (281)
|+. ..|..+....+..++..=-..|+.. |++.++
T Consensus 223 Dvf-iTDPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT 259 (354)
T COG1568 223 DVF-ITDPPETIKALKLFLGRGIATLKGEGCAGYFGIT 259 (354)
T ss_pred Cee-ecCchhhHHHHHHHHhccHHHhcCCCccceEeee
Confidence 954 4777766666666666555555544 444444
No 269
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=95.30 E-value=0.55 Score=39.56 Aligned_cols=120 Identities=14% Similarity=0.006 Sum_probs=66.2
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcC-C--EEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCC-----CCCc
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLG-A--QVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDP-----DQDL 191 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g-~--~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~-----~~~~ 191 (281)
.-++.+|||+||-.|..+-.+-++. . .|.++|+-.... -.|.. .+..-|..+.. -..+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p-------~~Ga~-------~i~~~dvtdp~~~~ki~e~l 132 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP-------PEGAT-------IIQGNDVTDPETYRKIFEAL 132 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC-------CCCcc-------cccccccCCHHHHHHHHHhC
Confidence 3578899999999999998887743 3 499999822100 00100 01111221111 0124
Q ss_pred CCCCCcEEEEccccCC-----CCcHHHHHHHHHH-------hhCCCcEEEEEEeeeChhHHHHHHHHHhcCCe-EEEE
Q 023543 192 IQPLPDYVLGSDVIYS-----EGAVGDLLDTLLQ-------LCGTQTTIFLAGELRNDSVLEYFLEAAMKDFV-IGRV 256 (281)
Q Consensus 192 ~~~~fD~Iia~d~iy~-----~~~~~~ll~~l~~-------ll~~~g~~~l~~~~r~~~~~~~fl~~~~~~f~-v~~i 256 (281)
++.+.|+|+ +|...+ ..++..+++.+.. ++.|+|.++.-.-...+ ...|...+...|+ |..+
T Consensus 133 p~r~VdvVl-SDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e--~~~l~r~l~~~f~~Vk~v 207 (232)
T KOG4589|consen 133 PNRPVDVVL-SDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE--EALLQRRLQAVFTNVKKV 207 (232)
T ss_pred CCCcccEEE-eccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc--hHHHHHHHHHHhhhcEee
Confidence 667889777 455544 2345555555543 34789987544332222 2446666666675 4444
No 270
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=95.17 E-value=0.23 Score=45.00 Aligned_cols=113 Identities=16% Similarity=0.088 Sum_probs=66.3
Q ss_pred CCCeEEEECCCcCHHHHHHHHcCCEEEEEechh-HH--HHHHHHHHHhhcCCC-----------CCCceEEEEEe-----
Q 023543 122 HGKKIVELGSGCGLVGCIAALLGAQVILTDLPD-RL--RLLKKNIENNLRHGD-----------LRGSAVVTELT----- 182 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~~~-~l--~~~~~N~~~n~~~~~-----------~~~~i~~~~l~----- 182 (281)
..-+||==|||.|.++.-+|..|.++-+-+.+. |+ ..--.|.-.+..... ....-++..+.
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 345899999999999999999999988887743 42 222223322211100 00000000000
Q ss_pred -------------cCCCCCCCcC----CCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 183 -------------WGDDPDQDLI----QPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 183 -------------w~~~~~~~~~----~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
|..++-.... ...||+|+-|-.|=....+-..++++.++|+|||+.+-.++.
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPL 298 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPL 298 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccce
Confidence 1011110111 135899998855544667888999999999999987655443
No 271
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.16 E-value=0.087 Score=42.57 Aligned_cols=97 Identities=23% Similarity=0.149 Sum_probs=63.7
Q ss_pred CCeEEEECCCcCHHHHHHHHcCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 123 GKKIVELGSGCGLVGCIAALLGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
.++.+|||+|-|.+-+.+++.|. +-+++++ +-.+.+++..+-+.+.. .+..|..-| .....+-+-.+-+|.
T Consensus 73 ~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~----k~trf~Rkd---lwK~dl~dy~~vviF 145 (199)
T KOG4058|consen 73 KGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCA----KSTRFRRKD---LWKVDLRDYRNVVIF 145 (199)
T ss_pred CCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcc----cchhhhhhh---hhhccccccceEEEe
Confidence 35899999999999999999995 5899999 77788888888887765 344444322 111122122233333
Q ss_pred EccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 201 GSDVIYSEGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 201 a~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
++ ++.++.|...+..-|..++.++-+
T Consensus 146 ga-----es~m~dLe~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 146 GA-----ESVMPDLEDKLRTELPANTRVVAC 171 (199)
T ss_pred eh-----HHHHhhhHHHHHhhCcCCCeEEEE
Confidence 33 333566777777667777776443
No 272
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.99 E-value=0.14 Score=47.30 Aligned_cols=100 Identities=28% Similarity=0.306 Sum_probs=62.0
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCC-CC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQ-PL 195 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~-~~ 195 (281)
..+.+|+=+|||. |++++.+++ .|+ +|+++|. ++.+++|++-...-.... .... +.... -....+ ..
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~---~~~~----~~~~~-~~~~t~g~g 238 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVN---PSED----DAGAE-ILELTGGRG 238 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeec---Cccc----cHHHH-HHHHhCCCC
Confidence 3455999999997 988877776 565 6999999 788999886221110000 0000 00000 001122 36
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
+|+++-+-- .+..+..+.++++++|.+.+....
T Consensus 239 ~D~vie~~G------~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 239 ADVVIEAVG------SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CCEEEECCC------CHHHHHHHHHHhcCCCEEEEEecc
Confidence 898886554 366888888999999987766544
No 273
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=94.93 E-value=0.072 Score=48.73 Aligned_cols=109 Identities=20% Similarity=0.071 Sum_probs=69.5
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEech-hHHH-------HHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDLP-DRLR-------LLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLI 192 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~~-~~l~-------~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~ 192 (281)
.+|+-|.|=-.|||-+-+.+|..|+.|+|+|++ .++. ..+.|.++.+... .-..+...|..+ .....
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~---~fldvl~~D~sn--~~~rs 281 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSS---QFLDVLTADFSN--PPLRS 281 (421)
T ss_pred CCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcc---hhhheeeecccC--cchhh
Confidence 578999999999998888899999999999995 4454 3455666655431 122333333322 12234
Q ss_pred CCCCcEEEEccccCCC----------------------------------CcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 193 QPLPDYVLGSDVIYSE----------------------------------GAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 193 ~~~fD~Iia~d~iy~~----------------------------------~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
|..||.|| ||..|.. ..+..++....+.|..||++.+-.+.+
T Consensus 282 n~~fDaIv-cDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~~ 357 (421)
T KOG2671|consen 282 NLKFDAIV-CDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPTI 357 (421)
T ss_pred cceeeEEE-eCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCch
Confidence 56788766 4444431 114556677777788888876655443
No 274
>PRK11524 putative methyltransferase; Provisional
Probab=94.90 E-value=0.099 Score=46.97 Aligned_cols=45 Identities=13% Similarity=0.244 Sum_probs=41.0
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHH
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIEN 165 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~ 165 (281)
.+|..|||--||+|..++++.++|-+.+|+|+ ++-++.+++.+..
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999 7788988888754
No 275
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=94.77 E-value=0.15 Score=43.38 Aligned_cols=111 Identities=11% Similarity=0.032 Sum_probs=60.0
Q ss_pred CCeEEEECCCcCHHHHHHHHcCCE--EEEEec-hhHHHHHHHHHHHhhcCCC--CCCceEEEEEecCCCCCCCcCCC--C
Q 023543 123 GKKIVELGSGCGLVGCIAALLGAQ--VILTDL-PDRLRLLKKNIENNLRHGD--LRGSAVVTELTWGDDPDQDLIQP--L 195 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~~g~~--V~~tD~-~~~l~~~~~N~~~n~~~~~--~~~~i~~~~l~w~~~~~~~~~~~--~ 195 (281)
.-.+.|||||.|-+-+.++.+-.. ++|.++ ..+-+..+..|........ .-.++.+....--.-.+..+... .
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 346899999999666666665543 899999 7788888888776542211 11233333221100000000000 0
Q ss_pred CcEEEEccccCCCC------cHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 196 PDYVLGSDVIYSEG------AVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 196 fD~Iia~d~iy~~~------~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
-++.+-.|.-+... .-..++....-+|+++|.+|....
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence 13333333322211 124577777888999999886643
No 276
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=94.43 E-value=0.14 Score=47.98 Aligned_cols=90 Identities=13% Similarity=-0.019 Sum_probs=47.6
Q ss_pred CCeEEEECCCcCHHHHHHHH--------c---------CCEEEEEechhH-HHHHHHHHH---Hh-----h-cCCCCCCc
Q 023543 123 GKKIVELGSGCGLVGCIAAL--------L---------GAQVILTDLPDR-LRLLKKNIE---NN-----L-RHGDLRGS 175 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~--------~---------g~~V~~tD~~~~-l~~~~~N~~---~n-----~-~~~~~~~~ 175 (281)
.-+|+|+|||+|..++.+.. . ..+|...|++.- ...+=+++. .. . +.. ...+
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~-~~~~ 142 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAA-SGHR 142 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccc-cCCC
Confidence 55899999999977765421 0 136899999421 111111111 10 0 000 0011
Q ss_pred eEEEEEecCCCCCCCcCCCCCcEEEEccccCCCCcHHH
Q 023543 176 AVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGD 213 (281)
Q Consensus 176 i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ 213 (281)
.-+...--|......++..+.+++.++-.+||-+..+.
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~ 180 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPE 180 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCch
Confidence 11222222333344566778899999999888555443
No 277
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.26 E-value=0.28 Score=45.13 Aligned_cols=94 Identities=22% Similarity=0.276 Sum_probs=57.6
Q ss_pred cCCCeEEEECCC-cCHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSG-CGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcG-tG~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.+|++|+=.|+| .|..++-+|+ +|++|+++|. ++-++.+++--.. ...++.+.....-....||
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd-------------~~i~~~~~~~~~~~~~~~d 231 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGAD-------------HVINSSDSDALEAVKEIAD 231 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCc-------------EEEEcCCchhhHHhHhhCc
Confidence 568999999998 2456776776 8999999999 6777777743111 1222221111000112388
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
+|+..-. +..+....++|+++|.+.+....
T Consensus 232 ~ii~tv~-------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 232 AIIDTVG-------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred EEEECCC-------hhhHHHHHHHHhcCCEEEEECCC
Confidence 8775533 44555666778888887766543
No 278
>PRK13699 putative methylase; Provisional
Probab=94.07 E-value=0.23 Score=43.20 Aligned_cols=46 Identities=15% Similarity=0.100 Sum_probs=40.5
Q ss_pred cCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHh
Q 023543 121 LHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENN 166 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n 166 (281)
.+|..|||--||+|..++++.++|.+++++|+ ++-.+.+.+.++..
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999 77788887777654
No 279
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=94.07 E-value=0.23 Score=47.51 Aligned_cols=96 Identities=16% Similarity=0.157 Sum_probs=65.1
Q ss_pred eEEEECCCcCHHHHHHHHcCCE-EEEEec-hhHHHH-HHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEE
Q 023543 125 KIVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRL-LKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLG 201 (281)
Q Consensus 125 ~VLELGcGtG~~~i~~a~~g~~-V~~tD~-~~~l~~-~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia 201 (281)
++|.+|||.--+..-+-+-|.+ |+.+|+ +-++.. ..+|+..+. -..+... +.....+.++.||+||.
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~-------~~~~~~~---d~~~l~fedESFdiVId 120 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERP-------EMQMVEM---DMDQLVFEDESFDIVID 120 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCc-------ceEEEEe---cchhccCCCcceeEEEe
Confidence 8999999999888888888875 999999 445543 445553331 2333332 23344567789999997
Q ss_pred ccc----------cCCCCcHHHHHHHHHHhhCCCcEEEE
Q 023543 202 SDV----------IYSEGAVGDLLDTLLQLCGTQTTIFL 230 (281)
Q Consensus 202 ~d~----------iy~~~~~~~ll~~l~~ll~~~g~~~l 230 (281)
-.. +++.......+..+.++++++|+.+.
T Consensus 121 kGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s 159 (482)
T KOG2352|consen 121 KGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS 159 (482)
T ss_pred cCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence 333 33344566778888999999998543
No 280
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=94.06 E-value=0.054 Score=48.27 Aligned_cols=112 Identities=18% Similarity=0.079 Sum_probs=69.5
Q ss_pred cCceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCC
Q 023543 95 TGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLR 173 (281)
Q Consensus 95 tG~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~ 173 (281)
|-++.||-...+.+.. ..|..++|.|||.|-.... .....+++.|+ ...+..+++. ++
T Consensus 28 tr~~~Wp~v~qfl~~~----------~~gsv~~d~gCGngky~~~--~p~~~~ig~D~c~~l~~~ak~~---~~------ 86 (293)
T KOG1331|consen 28 TRAAPWPMVRQFLDSQ----------PTGSVGLDVGCGNGKYLGV--NPLCLIIGCDLCTGLLGGAKRS---GG------ 86 (293)
T ss_pred cccCccHHHHHHHhcc----------CCcceeeecccCCcccCcC--CCcceeeecchhhhhccccccC---CC------
Confidence 4466799765433332 3478999999999932111 12335899998 5555554421 11
Q ss_pred CceEEEEEecCCCCCCCcCCCCCcEEEEccccCCCCc---HHHHHHHHHHhhCCCcEEEEEE
Q 023543 174 GSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGA---VGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 174 ~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~---~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
. .+.. .+.......+++||.+++..++++... -..+++.+.+.++|||..++..
T Consensus 87 -~-~~~~---ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 87 -D-NVCR---ADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred -c-eeeh---hhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 0 0111 122333345678999999999998543 5678888888999999865543
No 281
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=93.91 E-value=0.52 Score=43.10 Aligned_cols=96 Identities=19% Similarity=0.200 Sum_probs=54.7
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++.+||=.|||. |..++.+|+ .|+ +|+++|. ++.++.+++ .+.. ..+.....++.+.. .....+
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~----~vi~~~~~~~~~~~---~~~g~~ 236 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGAD----KLVNPQNDDLDHYK---AEKGYF 236 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCc----EEecCCcccHHHHh---ccCCCC
Confidence 4688999899864 555555555 677 6999998 677777653 2221 00000000111000 012358
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
|+|+-+--- ...+....++++++|.+++...
T Consensus 237 D~vid~~G~------~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 237 DVSFEVSGH------PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred CEEEECCCC------HHHHHHHHHHhhcCCEEEEEcc
Confidence 887754221 3456677788899998876653
No 282
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=93.87 E-value=0.3 Score=45.02 Aligned_cols=110 Identities=16% Similarity=0.096 Sum_probs=54.6
Q ss_pred CCeEEEECCCcCHHHHHHHH------------cC------CEEEEEech--hH---HHHHHHHHHHhhcCCCCCCceEEE
Q 023543 123 GKKIVELGSGCGLVGCIAAL------------LG------AQVILTDLP--DR---LRLLKKNIENNLRHGDLRGSAVVT 179 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~------------~g------~~V~~tD~~--~~---l~~~~~N~~~n~~~~~~~~~i~~~ 179 (281)
.-+|+|+||.+|..++.+.. .+ .+|+..|+| +- ...+-.+....... .++-+.
T Consensus 17 ~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~----~~~f~~ 92 (334)
T PF03492_consen 17 PFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKF----RNYFVS 92 (334)
T ss_dssp EEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHT----TSEEEE
T ss_pred ceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCC----ceEEEE
Confidence 34899999999988776532 12 269999994 32 23333332221111 223222
Q ss_pred EEecCCCCCCCcCCCCCcEEEEccccCCCC---------------------------------------cHHHHHHHHHH
Q 023543 180 ELTWGDDPDQDLIQPLPDYVLGSDVIYSEG---------------------------------------AVGDLLDTLLQ 220 (281)
Q Consensus 180 ~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~---------------------------------------~~~~ll~~l~~ 220 (281)
.. -+......++..+.|++.++-.+||-+ ++..+++.-++
T Consensus 93 gv-pgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ 171 (334)
T PF03492_consen 93 GV-PGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAE 171 (334)
T ss_dssp EE-ES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ec-CchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 22 133334445566677777766666511 12334444445
Q ss_pred hhCCCcEEEEEEeeeCh
Q 023543 221 LCGTQTTIFLAGELRND 237 (281)
Q Consensus 221 ll~~~g~~~l~~~~r~~ 237 (281)
=|+|||++++....|+.
T Consensus 172 ELv~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 172 ELVPGGRMVLTFLGRDE 188 (334)
T ss_dssp HEEEEEEEEEEEEE-ST
T ss_pred eeccCcEEEEEEeeccc
Confidence 56799999888877654
No 283
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=93.64 E-value=0.065 Score=48.10 Aligned_cols=72 Identities=22% Similarity=0.223 Sum_probs=52.3
Q ss_pred eecchHHHHHHHHhh--hhccCccccCCCeEEEECCCcCHHHH-HHHHcCCE-EEEEec-hhHHHHHHHHHHHhhcC
Q 023543 98 VMWDSGVVLGKFLEH--AVDSGMLLLHGKKIVELGSGCGLVGC-IAALLGAQ-VILTDL-PDRLRLLKKNIENNLRH 169 (281)
Q Consensus 98 ~~W~~s~~la~~l~~--~~~~~~~~~~~~~VLELGcGtG~~~i-~~a~~g~~-V~~tD~-~~~l~~~~~N~~~n~~~ 169 (281)
..|+.+..+-.+=.. ........-.+..|+||=+|.|...+ .+-..||+ |.+.|. |.+++.+++|++.|++.
T Consensus 168 ~~~d~t~~MFS~GN~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~ 244 (351)
T KOG1227|consen 168 QIWDPTKTMFSRGNIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVM 244 (351)
T ss_pred EEechhhhhhhcCcHHHHHHhhhcccccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchH
Confidence 468887766554211 00000011346789999999999998 66678886 999999 99999999999999765
No 284
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=93.44 E-value=0.29 Score=42.05 Aligned_cols=43 Identities=26% Similarity=0.363 Sum_probs=32.7
Q ss_pred CeEEEECCCcCHHHHHHHHc-C---CEEEEEec-hhHHHHHHHHHHHh
Q 023543 124 KKIVELGSGCGLVGCIAALL-G---AQVILTDL-PDRLRLLKKNIENN 166 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~~-g---~~V~~tD~-~~~l~~~~~N~~~n 166 (281)
-++=|=.||+|.+--.+..+ + ..|++.|+ ++++++|++|+...
T Consensus 53 ~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LL 100 (246)
T PF11599_consen 53 YTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLL 100 (246)
T ss_dssp EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCC
T ss_pred eeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhc
Confidence 48999999999665555442 2 36999999 88999999998653
No 285
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=93.20 E-value=0.47 Score=42.19 Aligned_cols=107 Identities=19% Similarity=0.198 Sum_probs=61.1
Q ss_pred CeEEEECCCc---CHHHHHHHH--cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC---------
Q 023543 124 KKIVELGSGC---GLVGCIAAL--LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD--------- 188 (281)
Q Consensus 124 ~~VLELGcGt---G~~~i~~a~--~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~--------- 188 (281)
...||||||. |.+--.+.. ..++|+-+|. +-++..++.-+..|.. +...+...|..+...
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-----g~t~~v~aD~r~p~~iL~~p~~~~ 144 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-----GRTAYVQADLRDPEAILAHPEVRG 144 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-----SEEEEEE--TT-HHHHHCSHHHHC
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-----ccEEEEeCCCCCHHHHhcCHHHHh
Confidence 4899999994 333333222 5779999999 7778888877666532 235666666543211
Q ss_pred CCcCCCCCcEEEEccccCC---CCcHHHHHHHHHHhhCCCcEEEEEEeeeC
Q 023543 189 QDLIQPLPDYVLGSDVIYS---EGAVGDLLDTLLQLCGTQTTIFLAGELRN 236 (281)
Q Consensus 189 ~~~~~~~fD~Iia~d~iy~---~~~~~~ll~~l~~ll~~~g~~~l~~~~r~ 236 (281)
..-.+.|.= ++...++++ ......+++.+...|.||+.+.+++...+
T Consensus 145 ~lD~~rPVa-vll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 145 LLDFDRPVA-VLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp C--TTS--E-EEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred cCCCCCCee-eeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 011234443 455666665 35789999999999999999999987654
No 286
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=93.12 E-value=2.4 Score=37.27 Aligned_cols=125 Identities=14% Similarity=0.174 Sum_probs=65.3
Q ss_pred CcCceecch--HHHHHHHHhhhhccCccccCCCeEEEECCCcCHH-HHHHHHcCCE--EEEEec-hhHHHHHHHHHHHhh
Q 023543 94 VTGSVMWDS--GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLV-GCIAALLGAQ--VILTDL-PDRLRLLKKNIENNL 167 (281)
Q Consensus 94 ~tG~~~W~~--s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~-~i~~a~~g~~--V~~tD~-~~~l~~~~~N~~~n~ 167 (281)
..-+++|.. +.+.|..+-. ++ +.+..+|.+||=||+++|.. +-..-.-|.+ |++++. ...=+.+. |+...-
T Consensus 128 kvEyRVWnPfrSKLAA~I~gG-vd-nihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~-nmAkkR 204 (317)
T KOG1596|consen 128 KVEYRVWNPFRSKLAAGILGG-VD-NIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLI-NMAKKR 204 (317)
T ss_pred cEEEEEeChHHHHHHHHhhcC-cc-ceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHH-HHhhcc
Confidence 456789985 3333333322 22 23456899999999999954 3333334654 899998 43311111 111110
Q ss_pred cCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE-EccccCC----CCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 168 RHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL-GSDVIYS----EGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 168 ~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii-a~d~iy~----~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
.++....-| .- ...+|.+.+ +-|+||. +.....+.-.....|+++|-++++...
T Consensus 205 ------tNiiPIiED---Ar----hP~KYRmlVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvisika 263 (317)
T KOG1596|consen 205 ------TNIIPIIED---AR----HPAKYRMLVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVISIKA 263 (317)
T ss_pred ------CCceeeecc---CC----CchheeeeeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEEEec
Confidence 122222211 11 113443333 2455544 333444555566789999998877543
No 287
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=92.94 E-value=0.78 Score=40.70 Aligned_cols=129 Identities=16% Similarity=0.122 Sum_probs=74.9
Q ss_pred hHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHc-CCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEE
Q 023543 102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALL-GAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTE 180 (281)
Q Consensus 102 ~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~-g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~ 180 (281)
.-.+-++|+.+.+.... .-....|+.||||.=.-+.-+... +..++=+|.+++++.=++-+..++... ..+..+..
T Consensus 62 ~~~~Rtr~~D~~i~~~~-~~g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~--~~~~~~v~ 138 (260)
T TIGR00027 62 FIAVRTRFFDDFLLAAV-AAGIRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEP--PAHRRAVP 138 (260)
T ss_pred HHHHHHHHHHHHHHHHH-hcCCcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCC--CCceEEec
Confidence 34444556555332110 011347999999975444443322 456888888998877777776654321 23455555
Q ss_pred EecC----CCCCC-CcCCCCCcEEEEccccCC--CCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 181 LTWG----DDPDQ-DLIQPLPDYVLGSDVIYS--EGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 181 l~w~----~~~~~-~~~~~~fD~Iia~d~iy~--~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
.|.. +.... .+.....-++++-.++++ ++....+++.+.++..||+.+++-..
T Consensus 139 ~Dl~~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~ 198 (260)
T TIGR00027 139 VDLRQDWPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYV 198 (260)
T ss_pred cCchhhHHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 5433 11110 111123356677666655 56788999999999989888877654
No 288
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=92.91 E-value=0.81 Score=41.69 Aligned_cols=89 Identities=20% Similarity=0.096 Sum_probs=54.9
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.+|.+||=.|+|. |...+.+|+ .|++|++++. ++.++++++ .+.. . +.... + . ....+|
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~----~Ga~-----~--vi~~~--~-~----~~~~~d 225 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA----LGAA-----S--AGGAY--D-T----PPEPLD 225 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----hCCc-----e--ecccc--c-c----Ccccce
Confidence 4688999999853 444444444 6889999998 666666554 3322 0 11100 0 0 123578
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
+++-++.. ...+....+.++++|++++...
T Consensus 226 ~~i~~~~~------~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 226 AAILFAPA------GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred EEEECCCc------HHHHHHHHHhhCCCcEEEEEec
Confidence 87766654 3467777788999999877654
No 289
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=92.59 E-value=0.69 Score=41.71 Aligned_cols=86 Identities=17% Similarity=0.062 Sum_probs=52.2
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++++||=+|||. |+.++.+|+ .|++ |+++|. ++.++.+... .. + +-.+. ....+
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~~-------i-----~~~~~-----~~~g~ 201 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----EV-------L-----DPEKD-----PRRDY 201 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----cc-------c-----Chhhc-----cCCCC
Confidence 3577899888874 666665555 6886 777888 5555554421 10 0 00000 12468
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
|+|+-+--- +..++...++++++|++++...
T Consensus 202 Dvvid~~G~------~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 202 RAIYDASGD------PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred CEEEECCCC------HHHHHHHHHhhhcCcEEEEEee
Confidence 887754332 4566777788999998876553
No 290
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=92.51 E-value=0.32 Score=45.39 Aligned_cols=104 Identities=23% Similarity=0.255 Sum_probs=59.2
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEE-ecCCCCCCCcCCCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTEL-TWGDDPDQDLIQPL 195 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l-~w~~~~~~~~~~~~ 195 (281)
.++.+||.+|||. |...+.+|+ .|. +|+++|. ++.++.+++.. +.. .+..... +|.........+..
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~~-----vi~~~~~~~~~~~l~~~~~~~~ 254 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GAE-----TINFEEVDDVVEALRELTGGRG 254 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---CcE-----EEcCCcchHHHHHHHHHcCCCC
Confidence 4688999999886 766666665 576 5999998 77777776531 100 0111111 01110001112236
Q ss_pred CcEEEEcccc-------C--------CCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 196 PDYVLGSDVI-------Y--------SEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 196 fD~Iia~d~i-------y--------~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+|+|+-+--- | ...+-...+..+.++++++|.+++..
T Consensus 255 ~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 255 PDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 8988764210 0 11122456777888999999887664
No 291
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=92.44 E-value=0.47 Score=41.69 Aligned_cols=124 Identities=15% Similarity=0.106 Sum_probs=64.8
Q ss_pred CCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 122 HGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
...+|+|||||.=-+++..... ++.+++.|+ ..+++.+..-+...+.. ..+...|. .. .....+.|+
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~------~~~~v~Dl---~~-~~~~~~~Dl 174 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP------HDARVRDL---LS-DPPKEPADL 174 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C------EEEEEE-T---TT-SHTTSEESE
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC------cceeEeee---ec-cCCCCCcch
Confidence 3679999999988777765543 468999999 78899988877766543 33333332 11 123456788
Q ss_pred EEEccccCCCCcH--HHHHHHHHHhhCCCcEEEEEEeeeCh--------hHHHHHHHHHhc--CCeEEEEe
Q 023543 199 VLGSDVIYSEGAV--GDLLDTLLQLCGTQTTIFLAGELRND--------SVLEYFLEAAMK--DFVIGRVE 257 (281)
Q Consensus 199 Iia~d~iy~~~~~--~~ll~~l~~ll~~~g~~~l~~~~r~~--------~~~~~fl~~~~~--~f~v~~i~ 257 (281)
.+.-=++.--+.. ...++.+..+ ..-.++++.+.|+- .....+++.+.. ++.+.++.
T Consensus 175 aLllK~lp~le~q~~g~g~~ll~~~--~~~~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~~~~~ 243 (251)
T PF07091_consen 175 ALLLKTLPCLERQRRGAGLELLDAL--RSPHVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIVDRLT 243 (251)
T ss_dssp EEEET-HHHHHHHSTTHHHHHHHHS--CESEEEEEEES-------TTHHHCHHHHHHHHCCTTCEEEEEEE
T ss_pred hhHHHHHHHHHHHhcchHHHHHHHh--CCCeEEEeccccccccCccccccCHHHHHHHhcccCCceeeeee
Confidence 8865443210000 0111111111 23457778876541 223445555543 56665554
No 292
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=92.42 E-value=0.57 Score=36.18 Aligned_cols=87 Identities=22% Similarity=0.273 Sum_probs=56.5
Q ss_pred CCCeEEEECCCcC-HHHHHHHHcCCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 122 HGKKIVELGSGCG-LVGCIAALLGAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 122 ~~~~VLELGcGtG-~~~i~~a~~g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
..++|+|+|.|-= -++-.+++.|..|++||+++. ++. . .+.+..-| +.+|..-+--
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~------~a~-~--------g~~~v~DD--------itnP~~~iY~ 69 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK------TAP-E--------GLRFVVDD--------ITNPNISIYE 69 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHcCCcEEEEecccc------cCc-c--------cceEEEcc--------CCCccHHHhh
Confidence 4459999998863 467778889999999999433 111 1 23333322 2445555556
Q ss_pred EccccCCCCcHHHHHHHHHHhhCCCcE-EEEE
Q 023543 201 GSDVIYSEGAVGDLLDTLLQLCGTQTT-IFLA 231 (281)
Q Consensus 201 a~d~iy~~~~~~~ll~~l~~ll~~~g~-~~l~ 231 (281)
+++.+|...-.+.+.+.+.++.+.-|. +++.
T Consensus 70 ~A~lIYSiRpppEl~~~ildva~aVga~l~I~ 101 (129)
T COG1255 70 GADLIYSIRPPPELQSAILDVAKAVGAPLYIK 101 (129)
T ss_pred CccceeecCCCHHHHHHHHHHHHhhCCCEEEE
Confidence 788888877777788888777765443 4443
No 293
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=92.35 E-value=0.78 Score=42.09 Aligned_cols=93 Identities=14% Similarity=0.177 Sum_probs=53.1
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCCEEEEEec----hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCC-CCCcCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL----PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDP-DQDLIQ 193 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~~V~~tD~----~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~-~~~~~~ 193 (281)
.+|.+||=+|||. |.+++.+|+ .|++|++++. ++.++.+++ .+.. . .++.+.. ......
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~----~Ga~--------~--v~~~~~~~~~~~~~ 236 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE----LGAT--------Y--VNSSKTPVAEVKLV 236 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH----cCCE--------E--ecCCccchhhhhhc
Confidence 4688999999864 555555554 6889999986 334444432 2221 1 1111100 000112
Q ss_pred CCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 194 PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 194 ~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
..+|+|+-+--- ...+....++++++|.+++...
T Consensus 237 ~~~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 237 GEFDLIIEATGV------PPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred CCCCEEEECcCC------HHHHHHHHHHccCCcEEEEEec
Confidence 468877754321 3466777788999998776553
No 294
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=91.80 E-value=0.48 Score=41.36 Aligned_cols=81 Identities=17% Similarity=0.124 Sum_probs=40.6
Q ss_pred eEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCC----CCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 125 KIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGD----LRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 125 ~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~----~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
+|||.=||.|.-++.+|..|++|++++. +-+-.+++.-++....... ...++++..-+-.+... ....+||+|
T Consensus 78 ~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~--~~~~s~DVV 155 (234)
T PF04445_consen 78 SVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR--QPDNSFDVV 155 (234)
T ss_dssp -EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC--CHSS--SEE
T ss_pred EEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh--hcCCCCCEE
Confidence 8999999999999999999999999999 4433333332222211100 01356666644322222 345789977
Q ss_pred EEccccCCC
Q 023543 200 LGSDVIYSE 208 (281)
Q Consensus 200 ia~d~iy~~ 208 (281)
.. |.+|..
T Consensus 156 Y~-DPMFp~ 163 (234)
T PF04445_consen 156 YF-DPMFPE 163 (234)
T ss_dssp EE---S---
T ss_pred EE-CCCCCC
Confidence 65 777764
No 295
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=91.78 E-value=4 Score=38.29 Aligned_cols=119 Identities=17% Similarity=0.190 Sum_probs=73.8
Q ss_pred ceecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEechhHHHHHHHHHHHhhcCCCCCCce
Q 023543 97 SVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDLPDRLRLLKKNIENNLRHGDLRGSA 176 (281)
Q Consensus 97 ~~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i 176 (281)
.+-|+++- +||.+++... ... .+||=|+=..|.+++.++..+.. ..+|---+-..++.|+.+|++.. +.+
T Consensus 25 l~awdaad---e~ll~~~~~~--~~~-~~~~i~nd~fGal~~~l~~~~~~-~~~ds~~~~~~~~~n~~~n~~~~---~~~ 94 (378)
T PRK15001 25 LQAWEAAD---EYLLQQLDDT--EIR-GPVLILNDAFGALSCALAEHKPY-SIGDSYISELATRENLRLNGIDE---SSV 94 (378)
T ss_pred ccccccHH---HHHHHHHhhc--ccC-CCEEEEcCchhHHHHHHHhCCCC-eeehHHHHHHHHHHHHHHcCCCc---ccc
Confidence 56699986 4554443211 122 38999999999999988865553 33555334556788999998751 123
Q ss_pred EEEEEecCCCCCCCcCCCCCcEEEEccccCCC---CcHHHHHHHHHHhhCCCcEEEEEEeeeC
Q 023543 177 VVTELTWGDDPDQDLIQPLPDYVLGSDVIYSE---GAVGDLLDTLLQLCGTQTTIFLAGELRN 236 (281)
Q Consensus 177 ~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~---~~~~~ll~~l~~ll~~~g~~~l~~~~r~ 236 (281)
..... . + . ....+|+|+. |.+ ..++.++..+..++.+++.++.....+.
T Consensus 95 ~~~~~--~---~-~-~~~~~d~vl~----~~PK~~~~l~~~l~~l~~~l~~~~~ii~g~~~k~ 146 (378)
T PRK15001 95 KFLDS--T---A-D-YPQQPGVVLI----KVPKTLALLEQQLRALRKVVTSDTRIIAGAKARD 146 (378)
T ss_pred eeecc--c---c-c-ccCCCCEEEE----EeCCCHHHHHHHHHHHHhhCCCCCEEEEEEecCC
Confidence 22221 1 1 1 1245897763 333 3467778888889999999876665544
No 296
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=91.60 E-value=0.57 Score=42.16 Aligned_cols=97 Identities=19% Similarity=0.161 Sum_probs=54.4
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
..+.+||-.|||. |...+.+|+ .|.+|++++. ++..+.+++ .+.. ..+......+.... .......+|
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~----~g~~----~~~~~~~~~~~~~~-~~~~~~~~D 234 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE----LGAD----EVLNSLDDSPKDKK-AAGLGGGFD 234 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCCC----EEEcCCCcCHHHHH-HHhcCCCce
Confidence 4577888888763 555555555 7889999988 666665543 2221 00000000000000 012235689
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+++.+--. ...++.+.+.|+++|.++...
T Consensus 235 ~vid~~g~------~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 235 VIFDFVGT------QPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred EEEECCCC------HHHHHHHHHHhhcCCEEEEEC
Confidence 88754221 456777788999999887653
No 297
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=91.51 E-value=0.49 Score=37.16 Aligned_cols=43 Identities=30% Similarity=0.346 Sum_probs=29.5
Q ss_pred HHHHHHhhhhccCccccCCCeEEEECCCc-CHHHHHHHHcCCEEEEEec-hh
Q 023543 105 VLGKFLEHAVDSGMLLLHGKKIVELGSGC-GLVGCIAALLGAQVILTDL-PD 154 (281)
Q Consensus 105 ~la~~l~~~~~~~~~~~~~~~VLELGcGt-G~~~i~~a~~g~~V~~tD~-~~ 154 (281)
.+|+|+.+. ...++|+|+|-|. --++..++..|..|++||+ +.
T Consensus 3 ~~a~~ia~~-------~~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~ 47 (127)
T PF03686_consen 3 DFAEYIARL-------NNYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR 47 (127)
T ss_dssp HHHHHHHHH-------S-SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S
T ss_pred hHHHHHHHh-------CCCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc
Confidence 467888754 3445999999986 3567788889999999999 55
No 298
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=91.41 E-value=0.53 Score=43.30 Aligned_cols=99 Identities=15% Similarity=0.106 Sum_probs=53.3
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.+|.+||=.|||. |...+.+|+ .|++ |+++|. ++.++.+++ .+.. .-+....-+|............+
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~----~~i~~~~~~~~~~i~~~~~~~g~ 246 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGAT----HTVNSSGTDPVEAIRALTGGFGA 246 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc----eEEcCCCcCHHHHHHHHhCCCCC
Confidence 4688999998764 555555555 6874 999998 666666643 2211 00111111111000001112358
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
|+|+- ++-. +..+....++++++|++++...
T Consensus 247 d~vid--~~g~----~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 247 DVVID--AVGR----PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CEEEE--CCCC----HHHHHHHHHHhccCCEEEEECC
Confidence 98874 3322 2345556678899998876543
No 299
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=91.26 E-value=1.1 Score=41.12 Aligned_cols=90 Identities=13% Similarity=0.108 Sum_probs=52.5
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH--cC-CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL--LG-AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~--~g-~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
.+|.+||=+|||. |+.++.+++ .| .+|+++|. ++.++.+++ .+. .... -++. ....
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~-------~~~~-~~~~-------~~~g 222 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE-------TYLI-DDIP-------EDLA 222 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc-------eeeh-hhhh-------hccC
Confidence 4688999999874 655555454 34 57999999 666777653 111 0000 0111 1124
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+|+|+-+-- . ...+..+....++++++|++++..
T Consensus 223 ~d~viD~~G--~-~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 223 VDHAFECVG--G-RGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred CcEEEECCC--C-CccHHHHHHHHHhCcCCcEEEEEe
Confidence 787774221 1 112456677778899999987654
No 300
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=91.12 E-value=4.2 Score=34.81 Aligned_cols=107 Identities=19% Similarity=0.103 Sum_probs=54.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHH----c--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC----C
Q 023543 121 LHGKKIVELGSGCGLVGCIAAL----L--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD----Q 189 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~----~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~----~ 189 (281)
.+.+.|+|+|.=.|--.+..|. . ..+|+++|+ -.... +..++.+... .++++.+.+..+... .
T Consensus 31 ~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp~~----~rI~~i~Gds~d~~~~~~v~ 104 (206)
T PF04989_consen 31 LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHPMS----PRITFIQGDSIDPEIVDQVR 104 (206)
T ss_dssp H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG--------TTEEEEES-SSSTHHHHTSG
T ss_pred hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhcccc----CceEEEECCCCCHHHHHHHH
Confidence 6788999999998866665553 2 247999999 32211 1111222222 578888855432110 0
Q ss_pred CcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 190 DLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 190 ~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
.+...+=-+++.-|.-|....+-.-++....++++|+++++.+.
T Consensus 105 ~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 105 ELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp SS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred HhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEec
Confidence 11112223566677777778888888889999999999887653
No 301
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=91.10 E-value=7.6 Score=36.10 Aligned_cols=132 Identities=20% Similarity=0.174 Sum_probs=73.1
Q ss_pred cCCCeEEEECCCcCHHHHHH--HHcCC----EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC----
Q 023543 121 LHGKKIVELGSGCGLVGCIA--ALLGA----QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ---- 189 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~--a~~g~----~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~---- 189 (281)
.+|.+|||+++-.|-=++.+ +.... .|++-|. +..+..++.-+..-... +..+...+-......
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~-----~~~v~~~~~~~~p~~~~~~ 228 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSP-----NLLVTNHDASLFPNIYLKD 228 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCc-----ceeeecccceecccccccc
Confidence 47889999999998444322 22222 6999999 66677666555332111 222222211110000
Q ss_pred --CcCCCCCcEEEE-----ccccCCC------------------CcHHHHHHHHHHhhCCCcEEEEEE----eeeChhHH
Q 023543 190 --DLIQPLPDYVLG-----SDVIYSE------------------GAVGDLLDTLLQLCGTQTTIFLAG----ELRNDSVL 240 (281)
Q Consensus 190 --~~~~~~fD~Iia-----~d~iy~~------------------~~~~~ll~~l~~ll~~~g~~~l~~----~~r~~~~~ 240 (281)
......||-|++ .|..... ...-.++..-.++|++||+++.+. +.++..+.
T Consensus 229 ~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV 308 (375)
T KOG2198|consen 229 GNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVV 308 (375)
T ss_pred CchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHH
Confidence 112246887775 3322210 112346666677899999977664 34566777
Q ss_pred HHHHHHHhcCCeEEEEe
Q 023543 241 EYFLEAAMKDFVIGRVE 257 (281)
Q Consensus 241 ~~fl~~~~~~f~v~~i~ 257 (281)
+..++.+...+.+..+.
T Consensus 309 ~~~L~~~~~~~~lv~~~ 325 (375)
T KOG2198|consen 309 QEALQKVGGAVELVDVS 325 (375)
T ss_pred HHHHHHhcCcccceeec
Confidence 77777776666654443
No 302
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=91.08 E-value=0.6 Score=43.21 Aligned_cols=97 Identities=24% Similarity=0.271 Sum_probs=52.9
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++.+||=.|+|. |...+.+|+ .|+ +|+++|. ++.++.+++ .+.. ..+.....+|.+... ......+
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~----~~i~~~~~~~~~~i~-~~~~~g~ 260 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGAT----ATVNAGDPNAVEQVR-ELTGGGV 260 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCc----eEeCCCchhHHHHHH-HHhCCCC
Confidence 4678888899763 444454554 688 6999998 666776653 2221 001111111110000 0122368
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
|+|+-+--- ...+....++++++|.+++..
T Consensus 261 d~vid~~G~------~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 261 DYAFEMAGS------VPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred CEEEECCCC------hHHHHHHHHHHhcCCEEEEEc
Confidence 888754211 345666677889999877654
No 303
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=90.87 E-value=6.9 Score=34.51 Aligned_cols=141 Identities=16% Similarity=0.165 Sum_probs=92.7
Q ss_pred ceecchH---HHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCC
Q 023543 97 SVMWDSG---VVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDL 172 (281)
Q Consensus 97 ~~~W~~s---~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~ 172 (281)
+++|.+. ..|..|+...-. ...+++ |..=||+=.++-.+.+..-++.++++ ++=...++.|....
T Consensus 65 ~RL~~a~~lpa~l~~yl~~i~~----lN~~~~-l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~~d------ 133 (279)
T COG2961 65 ARLWQAADLPAELEPYLDAVRQ----LNPGGG-LRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFAGD------ 133 (279)
T ss_pred HHHHhcCCchHHHHHHHHHHHH----hCCCCC-cccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhCCC------
Confidence 3566653 346667665321 123333 77788887777777777778999999 87778888777632
Q ss_pred CCceEEEEEecCCCCCCCcCCCCCcEEEEccccCC-CCcHHHHHHHHHHhhC--CCcEEEEEEeeeChhHHHHHHHHHhc
Q 023543 173 RGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYS-EGAVGDLLDTLLQLCG--TQTTIFLAGELRNDSVLEYFLEAAMK 249 (281)
Q Consensus 173 ~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~-~~~~~~ll~~l~~ll~--~~g~~~l~~~~r~~~~~~~fl~~~~~ 249 (281)
.++.+...|--......++.+.=.-.|.-|.-|. ..+++.+++++.+.++ ++|+..|=++......++.|++.++.
T Consensus 134 -~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~~~f~~~L~~ 212 (279)
T COG2961 134 -RRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAIWYPIKDRRQIRRFLRALEA 212 (279)
T ss_pred -cceEEEecCcHHHHhhhCCCCCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEEEEeecchHHHHHHHHHHhh
Confidence 3566666541111111222222244455666666 6789999999999887 57887788888887788999988875
No 304
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=90.78 E-value=5.3 Score=32.88 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=72.2
Q ss_pred chHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHH-HHcCCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEE
Q 023543 101 DSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIA-ALLGAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVT 179 (281)
Q Consensus 101 ~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~-a~~g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~ 179 (281)
+++..|++.+.+. ...+.+|+=|||=+-...+.- ...+.++++.|+.......- ++ .+.
T Consensus 10 ~T~~~l~~~l~~~------~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~-------------~~-~F~ 69 (162)
T PF10237_consen 10 ETAEFLARELLDG------ALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFG-------------GD-EFV 69 (162)
T ss_pred HHHHHHHHHHHHh------cCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcC-------------Cc-ceE
Confidence 3456667666653 235679999987654444433 11345799999954422110 12 345
Q ss_pred EEecCCCCC--CCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChh
Q 023543 180 ELTWGDDPD--QDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDS 238 (281)
Q Consensus 180 ~l~w~~~~~--~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~ 238 (281)
-+|...+.. ..+ ..+||+||+=......+.......+++.++++++.++++.......
T Consensus 70 fyD~~~p~~~~~~l-~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg~~~~~ 129 (162)
T PF10237_consen 70 FYDYNEPEELPEEL-KGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILCTGEEMEE 129 (162)
T ss_pred ECCCCChhhhhhhc-CCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEecHHHHHH
Confidence 555443322 112 4689988876666566677888899999999999988886655443
No 305
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=90.70 E-value=1 Score=39.86 Aligned_cols=97 Identities=26% Similarity=0.231 Sum_probs=53.7
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++.+||=.|+|. |..++.+|+ .|++ |+++|. ++.++.+++ .+.. ..+..... + ...........+
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~----~~i~~~~~-~-~~~~~~~~~~g~ 188 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGAT----ALAEPEVL-A-ERQGGLQNGRGV 188 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCc----EecCchhh-H-HHHHHHhCCCCC
Confidence 4788999998864 555554554 6876 999998 666666654 1211 00000000 0 000000112458
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
|+|+-+--- ...++...++++++|++++...
T Consensus 189 d~vid~~G~------~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 189 DVALEFSGA------TAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred CEEEECCCC------hHHHHHHHHHhcCCCEEEEecc
Confidence 887754221 4466677788899998876553
No 306
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=90.04 E-value=0.29 Score=46.84 Aligned_cols=106 Identities=18% Similarity=0.152 Sum_probs=70.9
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc--CC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCC-CCCCcCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL--GA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDD-PDQDLIQPL 195 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~--g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~-~~~~~~~~~ 195 (281)
.++-+|||-=|+||+=+|-.|+. |. +|++-|. +.+++..++|++.|+.. +.+....-|.... .........
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~----~ive~~~~DA~~lM~~~~~~~~~ 183 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVE----DIVEPHHSDANVLMYEHPMVAKF 183 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCch----hhcccccchHHHHHHhccccccc
Confidence 35568999999999999988873 33 5999999 78899999999999665 2333333221110 011112456
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
||+| --|.. .....++....+.++.||++++.+..
T Consensus 184 FDvI-DLDPy---Gs~s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 184 FDVI-DLDPY---GSPSPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred cceE-ecCCC---CCccHHHHHHHHHhhcCCEEEEEecc
Confidence 8854 33332 22355788888888899998888653
No 307
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=89.81 E-value=0.12 Score=40.03 Aligned_cols=85 Identities=28% Similarity=0.348 Sum_probs=55.0
Q ss_pred CcCHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCC-CC---CcCC-CCCcEEEEccc
Q 023543 132 GCGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDP-DQ---DLIQ-PLPDYVLGSDV 204 (281)
Q Consensus 132 GtG~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~-~~---~~~~-~~fD~Iia~d~ 204 (281)
|.|+.++.+|+ .|++|+++|. ++.++.+++ .+.. ..+++.+.. .. .+.+ .++|+|+-+--
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~----~Ga~---------~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKE----LGAD---------HVIDYSDDDFVEQIRELTGGRGVDVVIDCVG 67 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TTES---------EEEETTTSSHHHHHHHHTTTSSEEEEEESSS
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHh----hccc---------ccccccccccccccccccccccceEEEEecC
Confidence 45777777776 7899999999 666777663 3322 223332221 00 1122 47898886644
Q ss_pred cCCCCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 205 IYSEGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 205 iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
. ...++....+++++|.+.+.....
T Consensus 68 ~------~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 S------GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp S------HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred c------HHHHHHHHHHhccCCEEEEEEccC
Confidence 3 678888889999999988776443
No 308
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=89.59 E-value=0.75 Score=41.37 Aligned_cols=116 Identities=19% Similarity=0.187 Sum_probs=65.2
Q ss_pred eEEEECCCcCHHHHHHHHcCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEc
Q 023543 125 KIVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGS 202 (281)
Q Consensus 125 ~VLELGcGtG~~~i~~a~~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~ 202 (281)
+++||-||+|.+++.+...|.+ |.++|+ +.+.+..+.|.. + ....|..+.....+.. .+|+++++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-~-----------~~~~Di~~~~~~~l~~-~~D~l~gg 68 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-E-----------VICGDITEIDPSDLPK-DVDLLIGG 68 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-E-----------EEESHGGGCHHHHHHH-T-SEEEEE
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-c-----------cccccccccccccccc-cceEEEec
Confidence 6999999999999998899986 899999 788888888875 1 1111111111112222 48999985
Q ss_pred cccCCC--------------CcHHHHHHHHHHhhCCCcEEEEEEeee------ChhHHHHHHHHHhc-CCeEEEE
Q 023543 203 DVIYSE--------------GAVGDLLDTLLQLCGTQTTIFLAGELR------NDSVLEYFLEAAMK-DFVIGRV 256 (281)
Q Consensus 203 d~iy~~--------------~~~~~ll~~l~~ll~~~g~~~l~~~~r------~~~~~~~fl~~~~~-~f~v~~i 256 (281)
-..-.. ..+..+++.+.. ++|.- +++ .... ....++.++..+.+ |+.+...
T Consensus 69 pPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~-~~Pk~-~~~-ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~~~ 140 (335)
T PF00145_consen 69 PPCQGFSIAGKRKGFDDPRNSLFFEFLRIVKE-LKPKY-FLL-ENVPGLLSSKNGEVFKEILEELEELGYNVQWR 140 (335)
T ss_dssp ---TTTSTTSTHHCCCCHTTSHHHHHHHHHHH-HS-SE-EEE-EEEGGGGTGGGHHHHHHHHHHHHHTTEEEEEE
T ss_pred cCCceEeccccccccccccchhhHHHHHHHhh-ccceE-EEe-cccceeeccccccccccccccccccceeehhc
Confidence 443221 124455555543 35543 333 3322 22456777777764 7665433
No 309
>PLN02740 Alcohol dehydrogenase-like
Probab=89.33 E-value=1.1 Score=41.58 Aligned_cols=42 Identities=29% Similarity=0.461 Sum_probs=29.6
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHH
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKK 161 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~ 161 (281)
..+|.+||=+|||. |..++.+|+ .|+ +|+++|. ++.++.+++
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 34688999999764 555555554 687 6999999 666776653
No 310
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=88.84 E-value=3 Score=40.71 Aligned_cols=97 Identities=20% Similarity=0.258 Sum_probs=56.6
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCC----------C
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDD----------P 187 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~----------~ 187 (281)
.++.+|+=+|||. |+.++.+++ +|++|+++|. ++.++.++. .+.. +..++..+. .
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~----lGa~--------~v~v~~~e~g~~~~gYa~~~ 229 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS----MGAE--------FLELDFKEEGGSGDGYAKVM 229 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCCe--------EEeccccccccccccceeec
Confidence 4568999999985 666665554 7999999999 666665553 1211 111111000 0
Q ss_pred CCC--------cC--CCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 023543 188 DQD--------LI--QPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIF 229 (281)
Q Consensus 188 ~~~--------~~--~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~ 229 (281)
... +. -..+|+|+.+-.+-......-+.+.+.+.+|||+.++
T Consensus 230 s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 230 SEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 000 11 2468999887766443333335666677788776654
No 311
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=88.36 E-value=1.3 Score=38.11 Aligned_cols=94 Identities=24% Similarity=0.267 Sum_probs=54.1
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC-C---CcCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD-Q---DLIQ 193 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~-~---~~~~ 193 (281)
.++.+||-.|+|+ |...+.+++ .|.+|++++. ++..+.++.. +.. . .++..+... . ....
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~-----~----~~~~~~~~~~~~~~~~~~ 199 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL----GAD-----H----VIDYKEEDLEEELRLTGG 199 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CCc-----e----eccCCcCCHHHHHHHhcC
Confidence 5688999999986 433333443 6889999999 5555555422 211 0 111111000 0 1123
Q ss_pred CCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 194 PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 194 ~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
.++|+++.+-.. ...+..+.+.++++|.++....
T Consensus 200 ~~~d~vi~~~~~------~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 200 GGADVVIDAVGG------PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred CCCCEEEECCCC------HHHHHHHHHhcccCCEEEEEcc
Confidence 578998864322 2456667778889998776554
No 312
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=87.71 E-value=1.2 Score=40.91 Aligned_cols=43 Identities=21% Similarity=0.287 Sum_probs=36.5
Q ss_pred CCeEEEECCCcCHHHHHHHHcCCE-EEEEec-hhHHHHHHHHHHH
Q 023543 123 GKKIVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNIEN 165 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~~g~~-V~~tD~-~~~l~~~~~N~~~ 165 (281)
..+++||-||+|-+.+.+...|.+ +.++|+ +.+++..+.|...
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~ 47 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH 47 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC
Confidence 358999999999888888888987 799999 8888888877653
No 313
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=87.68 E-value=4 Score=36.94 Aligned_cols=99 Identities=17% Similarity=0.083 Sum_probs=57.9
Q ss_pred CeEEEECCCc--CHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEE
Q 023543 124 KKIVELGSGC--GLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVL 200 (281)
Q Consensus 124 ~~VLELGcGt--G~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Ii 200 (281)
.+|+=+|||. |++|..+++.|.+|++++. ++.++..+++ +++.....+........... . -..++||+|+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~---~Gl~i~~~g~~~~~~~~~~~--~--~~~~~~D~vi 75 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQA---GGLTLVEQGQASLYAIPAET--A--DAAEPIHRLL 75 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhc---CCeEEeeCCcceeeccCCCC--c--ccccccCEEE
Confidence 4688899996 5677788888889999998 5555555432 22211000111111111100 1 1135899888
Q ss_pred EccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 201 GSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 201 a~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
.+-=-| +....++.+..++.+++.++...
T Consensus 76 v~vK~~---~~~~al~~l~~~l~~~t~vv~lQ 104 (305)
T PRK05708 76 LACKAY---DAEPAVASLAHRLAPGAELLLLQ 104 (305)
T ss_pred EECCHH---hHHHHHHHHHhhCCCCCEEEEEe
Confidence 642222 35677888888999998766554
No 314
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=87.58 E-value=2.2 Score=39.80 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=28.2
Q ss_pred CCeEEEECCCcCHHHHHHHH-cCCEEEEEechhH
Q 023543 123 GKKIVELGSGCGLVGCIAAL-LGAQVILTDLPDR 155 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~-~g~~V~~tD~~~~ 155 (281)
=+.|+|+|+|-|.++-.++. .|..|.++|.+..
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~ 187 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQR 187 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhccCceEEEeccchH
Confidence 36999999999999988886 6788999999544
No 315
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=87.39 E-value=1.6 Score=39.51 Aligned_cols=93 Identities=26% Similarity=0.288 Sum_probs=51.0
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCC-CCC--Cc-C
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDD-PDQ--DL-I 192 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~-~~~--~~-~ 192 (281)
.+|.+||=+|+|. |...+.+|+ .|++ |+++|. ++.++.+++ .+.. .+ ++..+. ... .. .
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~----~ga~-------~~--i~~~~~~~~~~~~~~~ 228 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA----LGAD-------FV--INSGQDDVQEIRELTS 228 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC-------EE--EcCCcchHHHHHHHhC
Confidence 4588999898753 444444444 6887 999998 555655542 2221 00 110010 000 01 1
Q ss_pred CCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 193 QPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 193 ~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
..++|+|+-+--- ...+....++++++|.+++..
T Consensus 229 ~~~~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 229 GAGADVAIECSGN------TAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred CCCCCEEEECCCC------HHHHHHHHHHhhcCCEEEEEc
Confidence 2468988754221 334555567788999877554
No 316
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=87.02 E-value=4.5 Score=33.91 Aligned_cols=101 Identities=19% Similarity=0.251 Sum_probs=50.9
Q ss_pred eEEEECCCc-CH-HHHHHHHcCCEEEEEec-hhHHHHHHHH------------HHHhhcCCCCCCceEEEEEecCCCCCC
Q 023543 125 KIVELGSGC-GL-VGCIAALLGAQVILTDL-PDRLRLLKKN------------IENNLRHGDLRGSAVVTELTWGDDPDQ 189 (281)
Q Consensus 125 ~VLELGcGt-G~-~~i~~a~~g~~V~~tD~-~~~l~~~~~N------------~~~n~~~~~~~~~i~~~~l~w~~~~~~ 189 (281)
+|-=+|.|. |+ .+..+|..|.+|+++|+ ++.++.+++- ++++.. .++..+. .++...
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~----~~~l~~t-~~~~~a--- 73 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVS----AGRLRAT-TDIEEA--- 73 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHH----TTSEEEE-SEHHHH---
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccc----cccchhh-hhhhhh---
Confidence 455567664 53 35566778999999999 6656554311 111110 1233222 121110
Q ss_pred CcCCCCCcEEEEc-cccCC------CCcHHHHHHHHHHhhCCCcEEEEEEeeeC
Q 023543 190 DLIQPLPDYVLGS-DVIYS------EGAVGDLLDTLLQLCGTQTTIFLAGELRN 236 (281)
Q Consensus 190 ~~~~~~fD~Iia~-d~iy~------~~~~~~ll~~l~~ll~~~g~~~l~~~~r~ 236 (281)
-...|+++.| .+-+. .+.+...++.+...++++..+++-...-.
T Consensus 74 ---i~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvpp 124 (185)
T PF03721_consen 74 ---IKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPP 124 (185)
T ss_dssp ---HHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSST
T ss_pred ---hhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEE
Confidence 1234555543 22222 34478889999999999777666554443
No 317
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=86.87 E-value=2.5 Score=38.65 Aligned_cols=40 Identities=30% Similarity=0.580 Sum_probs=29.3
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCCEEEEEec-hhHHHHHH
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLK 160 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~~V~~tD~-~~~l~~~~ 160 (281)
.+|.+||=+|||. |...+.+|+ .|++|+++|. ++.++.++
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~ 207 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMK 207 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence 4688999999854 555555554 6889999998 66666664
No 318
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=86.82 E-value=1.4 Score=38.63 Aligned_cols=59 Identities=14% Similarity=0.185 Sum_probs=32.1
Q ss_pred HHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHH----c------CCEEEEEec-hhHHHHHHHHHH
Q 023543 106 LGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAAL----L------GAQVILTDL-PDRLRLLKKNIE 164 (281)
Q Consensus 106 la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~----~------g~~V~~tD~-~~~l~~~~~N~~ 164 (281)
+|.|+.............-+|+|+|+|+|.++.-+.. . ..+++.++. +.+.+.-++++.
T Consensus 2 ia~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~ 71 (252)
T PF02636_consen 2 IARWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLS 71 (252)
T ss_dssp HHHHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCC
T ss_pred hHHHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhh
Confidence 5556555332211111235999999999988765443 1 237999999 455444444443
No 319
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=86.50 E-value=2.1 Score=39.05 Aligned_cols=97 Identities=20% Similarity=0.121 Sum_probs=51.6
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++++||=.|+|. |...+.+|+ .|. .|+++|. ++.++.+++ .+.. ..+.....++............+
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~----~~v~~~~~~~~~~i~~~~~~~~~ 236 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGAT----DIVDYKNGDVVEQILKLTGGKGV 236 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc----eEecCCCCCHHHHHHHHhCCCCC
Confidence 4678999998763 444444454 677 5999999 555665552 2211 00000000000000001123468
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
|+|+-+-- . ...+..+.++++++|+++..
T Consensus 237 d~vld~~g--~----~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 237 DAVIIAGG--G----QDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred cEEEECCC--C----HHHHHHHHHHhhcCCEEEEe
Confidence 98874322 1 34667778888999987654
No 320
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.29 E-value=11 Score=31.86 Aligned_cols=104 Identities=20% Similarity=0.201 Sum_probs=56.3
Q ss_pred cCCCeEEEECCCcCHHHHHHH----HcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC-----
Q 023543 121 LHGKKIVELGSGCGLVGCIAA----LLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD----- 190 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a----~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~----- 190 (281)
.++++||=.|++. .+|..++ ..|++|++++. ++.++.+.+.+... .++.+...|+.+.....
T Consensus 3 ~~~~~vlItGa~g-~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~Dl~~~~~~~~~~~~ 74 (238)
T PRK05786 3 LKGKKVAIIGVSE-GLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY-------GNIHYVVGDVSSTESARNVIEK 74 (238)
T ss_pred cCCcEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------CCeEEEECCCCCHHHHHHHHHH
Confidence 4678999999864 4455444 46889999998 55454443333221 24556666665432110
Q ss_pred -c-CCCCCcEEEEccccCCCCc-----------------HHHHHHHHHHhhCCCcEEEEEE
Q 023543 191 -L-IQPLPDYVLGSDVIYSEGA-----------------VGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 191 -~-~~~~fD~Iia~d~iy~~~~-----------------~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
. .-.++|.++.+-..+.... .-.+++.+..+++++|.+++..
T Consensus 75 ~~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 75 AAKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred HHHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 0 0135687776554433211 1123455555566677655543
No 321
>PLN02827 Alcohol dehydrogenase-like
Probab=86.23 E-value=2.4 Score=39.49 Aligned_cols=98 Identities=22% Similarity=0.209 Sum_probs=51.4
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEE--ecCCCCCCCcCC
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTEL--TWGDDPDQDLIQ 193 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l--~w~~~~~~~~~~ 193 (281)
..+|.+||=.|+|. |...+.+|+ .|+ .|+++|. ++..+.+++ .+.. .-+..... +|..... .+..
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~----~~i~~~~~~~~~~~~v~-~~~~ 261 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVT----DFINPNDLSEPIQQVIK-RMTG 261 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc----EEEcccccchHHHHHHH-HHhC
Confidence 35688999998764 555554554 687 4899997 666665542 2221 00100100 1110000 1122
Q ss_pred CCCcEEEEccccCCCCcHHHHHHHHHHhhCCC-cEEEEEE
Q 023543 194 PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQ-TTIFLAG 232 (281)
Q Consensus 194 ~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~-g~~~l~~ 232 (281)
..+|+|+-+--- ...+....++++++ |++++..
T Consensus 262 ~g~d~vid~~G~------~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 262 GGADYSFECVGD------TGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CCCCEEEECCCC------hHHHHHHHHhhccCCCEEEEEC
Confidence 368887754221 33455566677887 8876544
No 322
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=85.51 E-value=3 Score=37.71 Aligned_cols=97 Identities=21% Similarity=0.168 Sum_probs=50.4
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++.+||-.|+|. |...+.+|+ .|. +|++++. ++..+.+++. +.. ..+.....+|.+.......+..+
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~~----~vi~~~~~~~~~~i~~~~~~~~~ 237 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GAT----DIINPKNGDIVEQILELTGGRGV 237 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CCc----EEEcCCcchHHHHHHHHcCCCCC
Confidence 4678898887652 545555555 675 7888887 5555555432 211 00111111111111111122568
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
|+++.+-- . ...+....+.++++|+++..
T Consensus 238 d~vld~~g--~----~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 238 DCVIEAVG--F----EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred cEEEEccC--C----HHHHHHHHHHhhcCCEEEEE
Confidence 98875321 1 24666667778888877644
No 323
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=85.35 E-value=1.4 Score=38.37 Aligned_cols=48 Identities=29% Similarity=0.342 Sum_probs=32.2
Q ss_pred HHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHH
Q 023543 106 LGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLR 157 (281)
Q Consensus 106 la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~ 157 (281)
|+.||....+. ...++++|+=||+|.+++.+...+.+|++-|+ +..+.
T Consensus 8 l~~~I~~~ip~----~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~ 56 (260)
T PF02086_consen 8 LAKWIIELIPK----NKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLIN 56 (260)
T ss_dssp GHHHHHHHS-S-----S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHH
T ss_pred HHHHHHHHcCC----CCCCEEEEEecchhHHHHHhcccccceeeeechHHHHH
Confidence 56677765321 16789999999999888887778889999999 55433
No 324
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=84.30 E-value=3.2 Score=37.77 Aligned_cols=98 Identities=23% Similarity=0.349 Sum_probs=51.5
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++.+||=+|||. |...+.+|+ .|++ |+++|. ++.++.+++ .+.. ..+.....++. ..........+
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~----~~i~~~~~~~~-~~~~~~~~~~~ 229 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAM----QTFNSREMSAP-QIQSVLRELRF 229 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc----eEecCcccCHH-HHHHHhcCCCC
Confidence 4688999998764 555554554 6886 789988 666665532 1211 00000000000 00001122356
Q ss_pred c-EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 197 D-YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 197 D-~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
| +|+-+-- ....+....++++++|.+++...
T Consensus 230 d~~v~d~~G------~~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 230 DQLILETAG------VPQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred CeEEEECCC------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 6 5543221 14566667788899999877653
No 325
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=84.26 E-value=2.5 Score=35.17 Aligned_cols=95 Identities=25% Similarity=0.332 Sum_probs=53.8
Q ss_pred EEEECCCc-C-HHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcC----CCC--------CCceEEEEEecCCCCCCC
Q 023543 126 IVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRH----GDL--------RGSAVVTELTWGDDPDQD 190 (281)
Q Consensus 126 VLELGcGt-G-~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~----~~~--------~~~i~~~~l~w~~~~~~~ 190 (281)
|-=+|+|+ | -++..++..|.+|++.|. ++.++.+++.+..+... ... ..++.+. .+...
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~-----~dl~~- 75 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT-----TDLEE- 75 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE-----SSGGG-
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc-----cCHHH-
Confidence 45578886 4 456666778999999999 77888777766653110 000 0122211 11111
Q ss_pred cCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 023543 191 LIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIF 229 (281)
Q Consensus 191 ~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~ 229 (281)
. ...|+|+-+= .-+.+.-..+++.+.+++.|+..+.
T Consensus 76 -~-~~adlViEai-~E~l~~K~~~~~~l~~~~~~~~ila 111 (180)
T PF02737_consen 76 -A-VDADLVIEAI-PEDLELKQELFAELDEICPPDTILA 111 (180)
T ss_dssp -G-CTESEEEE-S--SSHHHHHHHHHHHHCCS-TTSEEE
T ss_pred -H-hhhheehhhc-cccHHHHHHHHHHHHHHhCCCceEE
Confidence 1 1568777553 2234456789999999998888754
No 326
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=84.22 E-value=1.9 Score=39.36 Aligned_cols=75 Identities=16% Similarity=0.244 Sum_probs=45.9
Q ss_pred EEECCCcCHHHHHHHH----cCCEEEEEechh-HHHHHHHHHHHhhcCCCCCCceEEEEEecCCCC--C--CCcCCCCCc
Q 023543 127 VELGSGCGLVGCIAAL----LGAQVILTDLPD-RLRLLKKNIENNLRHGDLRGSAVVTELTWGDDP--D--QDLIQPLPD 197 (281)
Q Consensus 127 LELGcGtG~~~i~~a~----~g~~V~~tD~~~-~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~--~--~~~~~~~fD 197 (281)
+|+|.|+ ..|..+. .+...++||+.+ .+..++.|+.+|++. ..+.+....--+.. + ...++.-||
T Consensus 107 iDIgtga--sci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~ls----s~ikvV~~~~~ktll~d~~~~~~e~~yd 180 (419)
T KOG2912|consen 107 IDIGTGA--SCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLS----SLIKVVKVEPQKTLLMDALKEESEIIYD 180 (419)
T ss_pred eeccCch--hhhHHhhhchhccceeeeeeccccccchhhccccccccc----cceeeEEecchhhcchhhhccCccceee
Confidence 6887654 4444332 345689999955 599999999999887 45555443211100 0 011234588
Q ss_pred EEEEccccCC
Q 023543 198 YVLGSDVIYS 207 (281)
Q Consensus 198 ~Iia~d~iy~ 207 (281)
+.+++..+|.
T Consensus 181 FcMcNPPFfe 190 (419)
T KOG2912|consen 181 FCMCNPPFFE 190 (419)
T ss_pred EEecCCchhh
Confidence 8888777665
No 327
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.32 E-value=2 Score=39.23 Aligned_cols=39 Identities=15% Similarity=0.190 Sum_probs=33.2
Q ss_pred EEEECCCcCHHHHHHHHcCCE-EEEEec-hhHHHHHHHHHH
Q 023543 126 IVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNIE 164 (281)
Q Consensus 126 VLELGcGtG~~~i~~a~~g~~-V~~tD~-~~~l~~~~~N~~ 164 (281)
|+||-||.|.+++.+...|.+ +.++|+ +.+.+..+.|..
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~ 41 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG 41 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC
Confidence 689999999888888888988 578999 778888888753
No 328
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=83.31 E-value=2.4 Score=37.63 Aligned_cols=60 Identities=27% Similarity=0.337 Sum_probs=43.7
Q ss_pred HHHHHHHHhhhhcc-CccccCCCeEEEECCCcCHHHHHHHHcCCEEEEEechhHHHHHHHH
Q 023543 103 GVVLGKFLEHAVDS-GMLLLHGKKIVELGSGCGLVGCIAALLGAQVILTDLPDRLRLLKKN 162 (281)
Q Consensus 103 s~~la~~l~~~~~~-~~~~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~~~~l~~~~~N 162 (281)
-..|..|+...... .....+|+.+.||-+|||++|-.+-+.|.+|++-|+..--.++-+|
T Consensus 7 K~~LlsFi~~~i~~~~k~~~s~k~f~DiFaGtGVV~~~fkk~~n~iiaNDle~ysylln~~ 67 (330)
T COG3392 7 KYKLLSFIKENIHEVKKEDLSGKIFCDIFAGTGVVGRFFKKAGNKIIANDLEYYSYLLNQN 67 (330)
T ss_pred HHHHHHHHHHHHHHHhhcccCCCeeeeeccCccHHHHHHHHhcchhhhchHHHHHHHHHHH
Confidence 45677777664321 2234678899999999999999999999999999995443334333
No 329
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=83.15 E-value=5.7 Score=36.01 Aligned_cols=128 Identities=19% Similarity=0.221 Sum_probs=77.6
Q ss_pred hHHHHHHHHhhhhccCccccC-CCeEEEECCCcCHHHHHHHHc-CCEEEEEechhHHHHHHHHHHHhhcCCCCCCceEEE
Q 023543 102 SGVVLGKFLEHAVDSGMLLLH-GKKIVELGSGCGLVGCIAALL-GAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVT 179 (281)
Q Consensus 102 ~s~~la~~l~~~~~~~~~~~~-~~~VLELGcGtG~~~i~~a~~-g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~ 179 (281)
+-.+-++|+...+.. .... -+.|+-||||.=.=+--+-.. +.+|.=+|+|++++.=++.+...+... ....++.
T Consensus 73 ~~a~Rtr~fD~~~~~--~~~~g~~qvViLgaGLDTRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~--~~~~~~V 148 (297)
T COG3315 73 FLAARTRYFDDFVRA--ALDAGIRQVVILGAGLDTRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGATP--PAHRRLV 148 (297)
T ss_pred hHHHHHHHHHHHHHH--HHHhcccEEEEeccccccceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCCC--CceEEEE
Confidence 344445555543211 1123 378999999953111111111 457999999999988777777765432 2345555
Q ss_pred EEecC-CCCCCCcC-----CCCCcEEEEccccCC--CCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 180 ELTWG-DDPDQDLI-----QPLPDYVLGSDVIYS--EGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 180 ~l~w~-~~~~~~~~-----~~~fD~Iia~d~iy~--~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
..|.. ++....+. ....-++|+-.++++ ++....++..|..++.||..+++.+.
T Consensus 149 a~Dl~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 149 AVDLREDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred eccccccchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 55544 22222222 233356777666655 67789999999999999998877764
No 330
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=83.10 E-value=18 Score=35.25 Aligned_cols=48 Identities=21% Similarity=0.108 Sum_probs=37.2
Q ss_pred CCCeEEEECCCcCHHHHHHHH-cC-----CEEEEEec-hhHHHHHHHHHHHhhcC
Q 023543 122 HGKKIVELGSGCGLVGCIAAL-LG-----AQVILTDL-PDRLRLLKKNIENNLRH 169 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~-~g-----~~V~~tD~-~~~l~~~~~N~~~n~~~ 169 (281)
...+|.|--||+|..-+.+++ .+ ..++|.+. +....+++.|+-.++..
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~ 240 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE 240 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 456999999999955444443 22 34899999 77899999999999876
No 331
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=82.93 E-value=3.1 Score=38.97 Aligned_cols=114 Identities=18% Similarity=0.192 Sum_probs=63.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc-CC-EEEEEec-hhHHHHHHHHHHHh----hcCCCCCCceEEEEEecCCCCCCCcCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL-GA-QVILTDL-PDRLRLLKKNIENN----LRHGDLRGSAVVTELTWGDDPDQDLIQ 193 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~-g~-~V~~tD~-~~~l~~~~~N~~~n----~~~~~~~~~i~~~~l~w~~~~~~~~~~ 193 (281)
-++....|||+|.|-+...+|.. +. +=+|+.+ ...-+.+..|...+ ..-......+.....++-+........
T Consensus 191 g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI~ 270 (419)
T KOG3924|consen 191 GPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEIQ 270 (419)
T ss_pred CCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHHh
Confidence 35678899999999665555543 33 3455555 33333343333332 111111223344443322111111223
Q ss_pred CCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 194 PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 194 ~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
...++|+...+.+.++..-.+- .+-.-|++|++++=.-+.+
T Consensus 271 ~eatvi~vNN~~Fdp~L~lr~~-eil~~ck~gtrIiS~~~L~ 311 (419)
T KOG3924|consen 271 TEATVIFVNNVAFDPELKLRSK-EILQKCKDGTRIISSKPLV 311 (419)
T ss_pred hcceEEEEecccCCHHHHHhhH-HHHhhCCCcceEecccccc
Confidence 5679999999998877766655 6666778999887555443
No 332
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=82.89 E-value=2.2 Score=37.52 Aligned_cols=111 Identities=18% Similarity=0.151 Sum_probs=65.7
Q ss_pred CcCHHHHHHHH--cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCC-
Q 023543 132 GCGLVGCIAAL--LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYS- 207 (281)
Q Consensus 132 GtG~~~i~~a~--~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~- 207 (281)
=.|.+.++... ..-+.++.|+ +...+.++.|+... .++.+...|--......++.++=.-+|..|.-|.
T Consensus 65 YPGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~~-------~~v~v~~~DG~~~l~allPP~~rRglVLIDPpYE~ 137 (245)
T PF04378_consen 65 YPGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRRD-------RRVRVHHRDGYEGLKALLPPPERRGLVLIDPPYEQ 137 (245)
T ss_dssp EE-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--TT-------S-EEEE-S-HHHHHHHH-S-TTS-EEEEE-----S
T ss_pred CCCCHHHHHHhCCccceEEEEecCchHHHHHHHHhccC-------CccEEEeCchhhhhhhhCCCCCCCeEEEECCCCCC
Confidence 34555555544 4557999999 88888888887653 3566666431110001122223356677888776
Q ss_pred CCcHHHHHHHHHHhhC--CCcEEEEEEeeeChhHHHHHHHHHhc
Q 023543 208 EGAVGDLLDTLLQLCG--TQTTIFLAGELRNDSVLEYFLEAAMK 249 (281)
Q Consensus 208 ~~~~~~ll~~l~~ll~--~~g~~~l~~~~r~~~~~~~fl~~~~~ 249 (281)
..+++.+++++...++ +.|++++=++..+....+.|.+.+.+
T Consensus 138 ~~dy~~v~~~l~~a~kR~~~G~~~iWYPi~~~~~~~~~~~~l~~ 181 (245)
T PF04378_consen 138 KDDYQRVVDALAKALKRWPTGVYAIWYPIKDRERVDRFLRALKA 181 (245)
T ss_dssp TTHHHHHHHHHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhcCCcEEEEEeecccHHHHHHHHHHHHh
Confidence 6789999999999886 68888888998888778889888874
No 333
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=82.73 E-value=5.3 Score=36.33 Aligned_cols=45 Identities=13% Similarity=0.117 Sum_probs=37.1
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHH
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIEN 165 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~ 165 (281)
.+|+.++|-=+|.|--+..++.. ..+|+++|. ++++..+++++..
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~ 66 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD 66 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh
Confidence 46789999999999777776653 368999999 8999999888765
No 334
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=82.61 E-value=4.1 Score=41.50 Aligned_cols=96 Identities=24% Similarity=0.243 Sum_probs=60.2
Q ss_pred CeEEEECCCc-C-HHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcC----CCC--------CCceEEEEEecCCCCC
Q 023543 124 KKIVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRH----GDL--------RGSAVVTELTWGDDPD 188 (281)
Q Consensus 124 ~~VLELGcGt-G-~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~----~~~--------~~~i~~~~l~w~~~~~ 188 (281)
++|-=||+|+ | -++..+|..|.+|++.|. ++.++.++..+..+-.. ... ..++.+. ...+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-----~~~~ 388 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-----LDYA 388 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-----CCHH
Confidence 4788999997 4 456677788999999999 77787766655443111 000 0122221 1111
Q ss_pred CCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEE
Q 023543 189 QDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTI 228 (281)
Q Consensus 189 ~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~ 228 (281)
. -...|+||-+ +.-+.+.-..+++.+.++++|++++
T Consensus 389 -~--~~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~il 424 (715)
T PRK11730 389 -G--FERVDVVVEA-VVENPKVKAAVLAEVEQKVREDTIL 424 (715)
T ss_pred -H--hcCCCEEEec-ccCcHHHHHHHHHHHHhhCCCCcEE
Confidence 1 1456887765 4444566778899999888887654
No 335
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=82.40 E-value=4.3 Score=37.01 Aligned_cols=99 Identities=19% Similarity=0.111 Sum_probs=51.7
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++.+||=.|+|. |...+.+|+ .|+ +|++++. ++..+.+++ .+.. .-+.....+|.+..........+
T Consensus 171 ~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~----~ga~----~~i~~~~~~~~~~l~~~~~~~~~ 242 (351)
T cd08233 171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE----LGAT----IVLDPTEVDVVAEVRKLTGGGGV 242 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC----EEECCCccCHHHHHHHHhCCCCC
Confidence 4678888888652 333333343 688 7999988 566666543 1221 00111111111110001122358
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
|+|+-+--- ...++...+.++++|.++....
T Consensus 243 d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 243 DVSFDCAGV------QATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred CEEEECCCC------HHHHHHHHHhccCCCEEEEEcc
Confidence 988864321 3356666778899998776543
No 336
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=82.34 E-value=14 Score=33.93 Aligned_cols=97 Identities=19% Similarity=0.149 Sum_probs=53.5
Q ss_pred cCCCeEEEECC-C-cCHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEE-EecCCCCCCCcCCCC
Q 023543 121 LHGKKIVELGS-G-CGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTE-LTWGDDPDQDLIQPL 195 (281)
Q Consensus 121 ~~~~~VLELGc-G-tG~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~-l~w~~~~~~~~~~~~ 195 (281)
.+|.+||=.|+ | .|..++.+|+ .|++|++++. ++..+.+++. .+.. .-+.... -++.+... ......
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~---lGa~----~vi~~~~~~~~~~~i~-~~~~~g 228 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNK---LGFD----EAFNYKEEPDLDAALK-RYFPEG 228 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh---cCCC----EEEECCCcccHHHHHH-HHCCCC
Confidence 46889999998 3 3666665665 6889999988 5555555422 2221 0011000 01110000 112246
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+|+|+-+ +- ...+....++++++|.+++..
T Consensus 229 vD~v~d~--vG-----~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 229 IDIYFDN--VG-----GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred cEEEEEC--CC-----HHHHHHHHHHhccCCEEEEEC
Confidence 8877743 21 235666778889999877654
No 337
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=82.32 E-value=10 Score=33.00 Aligned_cols=92 Identities=22% Similarity=0.224 Sum_probs=52.0
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
..++.+||=.|||. |...+.+|+ .|.+ |++++. ++..+.+++. +.. ..+ .. ..+ .......
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~----~~~--~~--~~~---~~~~~~~ 159 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPA----DPV--AA--DTA---DEIGGRG 159 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCC----ccc--cc--cch---hhhcCCC
Confidence 35678898888764 444444454 6777 999998 6666555432 210 010 00 000 0112346
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+|+|+.+-.. ...+....+.++++|.++...
T Consensus 160 ~d~vl~~~~~------~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 160 ADVVIEASGS------PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred CCEEEEccCC------hHHHHHHHHHhcCCcEEEEEe
Confidence 8988754221 346666777889999876554
No 338
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=82.31 E-value=7.2 Score=35.95 Aligned_cols=93 Identities=18% Similarity=0.174 Sum_probs=48.7
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCCEEEEEec-hhH-HHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDR-LRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~~V~~tD~-~~~-l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.+|.+||=.|||. |...+.+|+ .|++|++++. ++. .+.+++ .+.. .+....-.+... ... ..+
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~----~Ga~-------~vi~~~~~~~~~-~~~-~~~ 248 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINR----LGAD-------SFLVSTDPEKMK-AAI-GTM 248 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHh----CCCc-------EEEcCCCHHHHH-hhc-CCC
Confidence 3678888898864 555555555 6889888887 443 222221 2211 000000000000 011 247
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
|+|+-+-- . ...+....++++++|.++...
T Consensus 249 D~vid~~g--~----~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 249 DYIIDTVS--A----VHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred CEEEECCC--C----HHHHHHHHHHhcCCcEEEEeC
Confidence 87774322 1 335566677889999877554
No 339
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=81.83 E-value=0.48 Score=36.29 Aligned_cols=40 Identities=13% Similarity=0.115 Sum_probs=29.7
Q ss_pred CCcEEEEccccCC------CCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 195 LPDYVLGSDVIYS------EGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 195 ~fD~Iia~d~iy~------~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
+||+|+|-.+.-+ .+-+..+++.+.++|+|||.+++-.+.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~ 46 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQP 46 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCC
Confidence 4899999877644 345788999999999999999988654
No 340
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=81.74 E-value=6.2 Score=35.65 Aligned_cols=79 Identities=19% Similarity=0.127 Sum_probs=53.6
Q ss_pred cccCCCeEEEECCCcC---HHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC----
Q 023543 119 LLLHGKKIVELGSGCG---LVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD---- 190 (281)
Q Consensus 119 ~~~~~~~VLELGcGtG---~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~---- 190 (281)
..++|+.||==|.|.| .+++.+|++|++++..|+ ++..+...+.++.+| .+....-|..+..+..
T Consensus 34 k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g-------~~~~y~cdis~~eei~~~a~ 106 (300)
T KOG1201|consen 34 KSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG-------EAKAYTCDISDREEIYRLAK 106 (300)
T ss_pred hhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC-------ceeEEEecCCCHHHHHHHHH
Confidence 4578999999999998 467778889999999999 666666666666653 3555555554432210
Q ss_pred ---cCCCCCcEEEEccc
Q 023543 191 ---LIQPLPDYVLGSDV 204 (281)
Q Consensus 191 ---~~~~~fD~Iia~d~ 204 (281)
-..++.|++|.+.-
T Consensus 107 ~Vk~e~G~V~ILVNNAG 123 (300)
T KOG1201|consen 107 KVKKEVGDVDILVNNAG 123 (300)
T ss_pred HHHHhcCCceEEEeccc
Confidence 01256788887443
No 341
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=81.02 E-value=11 Score=34.25 Aligned_cols=98 Identities=24% Similarity=0.262 Sum_probs=58.4
Q ss_pred eEEEECCCc--CHHHHHHHHcCCEEEEEechhHHHHHHHHHHHhhcCCCCCCc-eEEEEEecCCCCCCCcCCCCCcEEEE
Q 023543 125 KIVELGSGC--GLVGCIAALLGAQVILTDLPDRLRLLKKNIENNLRHGDLRGS-AVVTELTWGDDPDQDLIQPLPDYVLG 201 (281)
Q Consensus 125 ~VLELGcGt--G~~~i~~a~~g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~-i~~~~l~w~~~~~~~~~~~~fD~Iia 201 (281)
+|+=+|||. |++|..+++.|..|+.+-.++.++..+++ ++.+..... ....... .......+++|+|+.
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~----GL~i~~~~~~~~~~~~~----~~~~~~~~~~Dlviv 73 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKK----GLRIEDEGGNFTTPVVA----ATDAEALGPADLVIV 73 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhC----CeEEecCCCcccccccc----ccChhhcCCCCEEEE
Confidence 677899996 57788888888667776665556555543 333111011 0011100 011112247899886
Q ss_pred ccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 202 SDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 202 ~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
+= ...+.+..++.+..++++.+.+++...
T Consensus 74 ~v---Ka~q~~~al~~l~~~~~~~t~vl~lqN 102 (307)
T COG1893 74 TV---KAYQLEEALPSLAPLLGPNTVVLFLQN 102 (307)
T ss_pred Ee---ccccHHHHHHHhhhcCCCCcEEEEEeC
Confidence 42 234568999999999999998766544
No 342
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=80.80 E-value=31 Score=30.65 Aligned_cols=83 Identities=18% Similarity=0.211 Sum_probs=53.7
Q ss_pred ccCCCeEEEECCCcCH---HHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC------C
Q 023543 120 LLHGKKIVELGSGCGL---VGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD------Q 189 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~---~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~------~ 189 (281)
.+.++.+|-=|...|+ ++..+++.|++|+.++. ++.++.+..-....+.. ..++.....|-.+..+ .
T Consensus 5 ~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~~~~l~~~ 81 (270)
T KOG0725|consen 5 RLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYT---GGKVLAIVCDVSKEVDVEKLVEF 81 (270)
T ss_pred cCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCC---CCeeEEEECcCCCHHHHHHHHHH
Confidence 4789999999999884 45677889999999999 77776666555544332 2345555555432211 0
Q ss_pred Cc--CCCCCcEEEEcccc
Q 023543 190 DL--IQPLPDYVLGSDVI 205 (281)
Q Consensus 190 ~~--~~~~fD~Iia~d~i 205 (281)
.. ...++|+++.+.-.
T Consensus 82 ~~~~~~GkidiLvnnag~ 99 (270)
T KOG0725|consen 82 AVEKFFGKIDILVNNAGA 99 (270)
T ss_pred HHHHhCCCCCEEEEcCCc
Confidence 01 13567888875444
No 343
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=80.65 E-value=9.8 Score=35.38 Aligned_cols=91 Identities=15% Similarity=0.223 Sum_probs=48.7
Q ss_pred CCCeEEEECCCc-CHHHHHHHH-cCCEEEEEec-hhH-HHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC-CCcCCCCC
Q 023543 122 HGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDR-LRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD-QDLIQPLP 196 (281)
Q Consensus 122 ~~~~VLELGcGt-G~~~i~~a~-~g~~V~~tD~-~~~-l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~-~~~~~~~f 196 (281)
+|.+||=.|||. |..++.+|+ .|++|+++|. ++. .+.++ ..+.. .+ ++..+... .... +.+
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~----~lGa~-------~~--i~~~~~~~v~~~~-~~~ 243 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAID----RLGAD-------SF--LVTTDSQKMKEAV-GTM 243 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHH----hCCCc-------EE--EcCcCHHHHHHhh-CCC
Confidence 578898888864 555555555 6889999987 443 33332 12221 01 11111000 0011 247
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
|+|+-+-- ....+....++++++|.++...
T Consensus 244 D~vid~~G------~~~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 244 DFIIDTVS------AEHALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred cEEEECCC------cHHHHHHHHHhhcCCCEEEEEc
Confidence 87775421 1335566667788988876554
No 344
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=80.53 E-value=2.8 Score=40.13 Aligned_cols=110 Identities=20% Similarity=0.181 Sum_probs=59.8
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHc--C--CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCC
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALL--G--AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQP 194 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~--g--~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~ 194 (281)
.+....++|+|.|.|.-+-++..+ + ..++.+|. ..|+.....|... +..+ +...+..+-.-+..-+.....
T Consensus 198 ~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~-~~~~---g~~~v~~~~~~r~~~pi~~~~ 273 (491)
T KOG2539|consen 198 KFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRD-GSHI---GEPIVRKLVFHRQRLPIDIKN 273 (491)
T ss_pred ccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcC-hhhc---CchhccccchhcccCCCCccc
Confidence 356678999999987543333332 2 24899999 6677777666554 1110 112222211112222222335
Q ss_pred CCcEEEEccccCCC---CcHHHHHHHHHHh-hCCCcEEEEEEe
Q 023543 195 LPDYVLGSDVIYSE---GAVGDLLDTLLQL-CGTQTTIFLAGE 233 (281)
Q Consensus 195 ~fD~Iia~d~iy~~---~~~~~ll~~l~~l-l~~~g~~~l~~~ 233 (281)
.||+||++..++.. ..-..+.+.+.+- .++|+.+++...
T Consensus 274 ~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~ 316 (491)
T KOG2539|consen 274 GYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEK 316 (491)
T ss_pred ceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEec
Confidence 69999999998772 2333444444443 456666555543
No 345
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=80.31 E-value=6.3 Score=36.33 Aligned_cols=40 Identities=35% Similarity=0.545 Sum_probs=27.5
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHH
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLK 160 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~ 160 (281)
.+|.+||=+|+|. |...+.+|+ .|+ +|+++|. ++.++.++
T Consensus 185 ~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~ 228 (368)
T cd08300 185 EPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAK 228 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 4688999998753 444444444 688 6999998 66666554
No 346
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=80.12 E-value=18 Score=32.58 Aligned_cols=94 Identities=20% Similarity=0.222 Sum_probs=51.1
Q ss_pred CCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 122 HGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 122 ~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
++.+||-.|||. |...+.+|+ +|. +|++++. ++..+.+++ . +.. .-+.....++. .......++|
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~-~---g~~----~vi~~~~~~~~---~~~~~~~~vd 233 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA-M---GAD----ETVNLARDPLA---AYAADKGDFD 233 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-c---CCC----EEEcCCchhhh---hhhccCCCcc
Confidence 788999988763 444444444 687 7999988 555554443 1 111 00000000000 0000123589
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+++.+--. ...++.+.+.|+++|+++...
T Consensus 234 ~vld~~g~------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 234 VVFEASGA------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred EEEECCCC------HHHHHHHHHHHhcCCEEEEEe
Confidence 88865321 345667778889999877543
No 347
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.94 E-value=15 Score=32.74 Aligned_cols=97 Identities=20% Similarity=0.259 Sum_probs=54.6
Q ss_pred CeEEEECCCc-C-HHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhc------CCCC-------CCceEEEEEecCCCC
Q 023543 124 KKIVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLR------HGDL-------RGSAVVTELTWGDDP 187 (281)
Q Consensus 124 ~~VLELGcGt-G-~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~------~~~~-------~~~i~~~~l~w~~~~ 187 (281)
++|.=||+|+ | .++..++..|.+|++.|. ++.++.++.++..... .... ..++.+. ...
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----~d~ 78 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-----TDL 78 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-----CCH
Confidence 3577788885 3 344555667889999999 7777777666533211 0000 0112111 111
Q ss_pred CCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEE
Q 023543 188 DQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTI 228 (281)
Q Consensus 188 ~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~ 228 (281)
... -...|+|+.+=. ........+++.+...++++.++
T Consensus 79 ~~a--~~~aDlVieavp-e~~~~k~~~~~~l~~~~~~~~ii 116 (287)
T PRK08293 79 AEA--VKDADLVIEAVP-EDPEIKGDFYEELAKVAPEKTIF 116 (287)
T ss_pred HHH--hcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCCEE
Confidence 111 135688887632 22334677888888888777754
No 348
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=79.56 E-value=3.2 Score=36.88 Aligned_cols=32 Identities=25% Similarity=0.306 Sum_probs=26.3
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc-------CCEEEEEec
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL-------GAQVILTDL 152 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~-------g~~V~~tD~ 152 (281)
.++..++|+|||-|.++..++.. ...++++|.
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR 55 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDR 55 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEec
Confidence 46679999999999999888763 246999998
No 349
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=79.42 E-value=25 Score=31.32 Aligned_cols=85 Identities=25% Similarity=0.253 Sum_probs=49.5
Q ss_pred cCCCeEEEECCCcCHHHHHH---HH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIA---AL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~---a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
.++.+||=.|+| .+|.++ |+ +|++|++++. ++..+.+++ .+.. ...++.+. ....+
T Consensus 154 ~~g~~vlV~g~g--~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~---------~~~~~~~~----~~~~~ 214 (319)
T cd08242 154 TPGDKVAVLGDG--KLGLLIAQVLALTGPDVVLVGRHSEKLALARR----LGVE---------TVLPDEAE----SEGGG 214 (319)
T ss_pred CCCCEEEEECCC--HHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----cCCc---------EEeCcccc----ccCCC
Confidence 467888888764 455443 33 6889999988 666776664 2222 01111111 23356
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFL 230 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l 230 (281)
+|+++-+ .-. ...+....+.++++|.++.
T Consensus 215 ~d~vid~--~g~----~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 215 FDVVVEA--TGS----PSGLELALRLVRPRGTVVL 243 (319)
T ss_pred CCEEEEC--CCC----hHHHHHHHHHhhcCCEEEE
Confidence 8988754 111 3355566677788888765
No 350
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=79.32 E-value=9 Score=31.61 Aligned_cols=120 Identities=13% Similarity=0.077 Sum_probs=62.7
Q ss_pred CCeEEEECCCcCHHHHHHHHcCC-EEEEEechhH-HH-HHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 123 GKKIVELGSGCGLVGCIAALLGA-QVILTDLPDR-LR-LLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~~g~-~V~~tD~~~~-l~-~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
|++++=+|+..=.+=..+.+.|+ +|+-++++.. ++ ..+.. +. ++ ...++.... .....+||++
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr-----~s-----si--~p~df~~~~--~~y~~~fD~~ 67 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDR-----LS-----SI--LPVDFAKNW--QKYAGSFDFA 67 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccccc-----cc-----cc--cHHHHHHHH--HHhhccchhh
Confidence 67888899887776666667777 4877776321 00 00000 00 00 000000000 0012346666
Q ss_pred EEccccCC-----------CCcHHHHHHHHHHhhCCCcEEEEEEeeeChhH--------HHHHHHHHhcCCeEEEE
Q 023543 200 LGSDVIYS-----------EGAVGDLLDTLLQLCGTQTTIFLAGELRNDSV--------LEYFLEAAMKDFVIGRV 256 (281)
Q Consensus 200 ia~d~iy~-----------~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~--------~~~fl~~~~~~f~v~~i 256 (281)
.+-..+-+ +.--...+..++++||+||.++++.+...+.. -...+..+..+|++-..
T Consensus 68 as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe~i~t 143 (177)
T PF03269_consen 68 ASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFEWIDT 143 (177)
T ss_pred heechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcEEEee
Confidence 65444422 12234566778899999999999987644321 01125556678875544
No 351
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.71 E-value=8 Score=34.68 Aligned_cols=104 Identities=17% Similarity=0.286 Sum_probs=57.7
Q ss_pred eEEEECCCc-C-HHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceE-------EEEEecCCCCCCCcCCC
Q 023543 125 KIVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAV-------VTELTWGDDPDQDLIQP 194 (281)
Q Consensus 125 ~VLELGcGt-G-~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~-------~~~l~w~~~~~~~~~~~ 194 (281)
+|-=||+|+ | -++..++..|.+|++.|. ++.++.++..+..+-......+... ...+....... . -.
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~--~~ 83 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLG-D--FA 83 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHH-H--hC
Confidence 677889986 3 455666778999999999 7888776666554321100000000 00000011111 1 13
Q ss_pred CCcEEEEccccCCCCcHHHHHHHHHHhh-CCCcEEEEEEe
Q 023543 195 LPDYVLGSDVIYSEGAVGDLLDTLLQLC-GTQTTIFLAGE 233 (281)
Q Consensus 195 ~fD~Iia~d~iy~~~~~~~ll~~l~~ll-~~~g~~~l~~~ 233 (281)
..|+|+-+ +.-+.+.-..++..+.+++ +|+.++ .+..
T Consensus 84 ~~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il-~snT 121 (286)
T PRK07819 84 DRQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVL-ASNT 121 (286)
T ss_pred CCCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEE-EECC
Confidence 56888766 3334455677888888888 565544 4433
No 352
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=78.33 E-value=7.8 Score=34.94 Aligned_cols=98 Identities=18% Similarity=0.199 Sum_probs=51.1
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
..++.+||-.|+|. |...+.+|+ .|.+|+++.. ++..+.+++ .+.. .-+.....++.+.......+.++
T Consensus 157 l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~----~g~~----~v~~~~~~~~~~~l~~~~~~~~v 228 (337)
T cd08261 157 VTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARE----LGAD----DTINVGDEDVAARLRELTDGEGA 228 (337)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHH----hCCC----EEecCcccCHHHHHHHHhCCCCC
Confidence 35678999998753 444444454 6889888866 555555532 1111 00111111111100111123468
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
|+++.+--- ...+..+.+.++++|.++..
T Consensus 229 d~vld~~g~------~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 229 DVVIDATGN------PASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred CEEEECCCC------HHHHHHHHHHHhcCCEEEEE
Confidence 988865211 34566667788888887654
No 353
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=78.32 E-value=29 Score=28.56 Aligned_cols=64 Identities=13% Similarity=-0.003 Sum_probs=42.5
Q ss_pred CCCCCcEEEEccccCC-------------CCcHHHHHHHHHHhhCCCcEEEEEEeeeCh-hHHHHHHHHHh-cCCeEEEE
Q 023543 192 IQPLPDYVLGSDVIYS-------------EGAVGDLLDTLLQLCGTQTTIFLAGELRND-SVLEYFLEAAM-KDFVIGRV 256 (281)
Q Consensus 192 ~~~~fD~Iia~d~iy~-------------~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~-~~~~~fl~~~~-~~f~v~~i 256 (281)
...+||.||-+-+-.. ...+..+++.+..+|+++|.+.|+.....+ ... .....+. .||.+...
T Consensus 72 ~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W-~i~~lA~~~gl~l~~~ 150 (166)
T PF10354_consen 72 KNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSW-NIEELAAEAGLVLVRK 150 (166)
T ss_pred cCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccc-cHHHHHHhcCCEEEEE
Confidence 4578999997544332 245788889999999999999999876654 221 1223333 47776554
No 354
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=78.24 E-value=8.7 Score=34.76 Aligned_cols=97 Identities=18% Similarity=0.132 Sum_probs=49.4
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cC-CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LG-AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g-~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++.+||=.|+|. |...+.+|+ .| .+|+++|. +.....++. .+.. .-+.....++...........++
T Consensus 165 ~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~----~~v~~~~~~~~~~i~~~~~~~~~ 236 (345)
T cd08286 165 KPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKK----LGAT----HTVNSAKGDAIEQVLELTDGRGV 236 (345)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCC----ceeccccccHHHHHHHHhCCCCC
Confidence 4577776677642 333333343 67 68888988 544554442 1211 01111111111000111123568
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
|+|+.+-- ....+..+.+.|+++|.++..
T Consensus 237 d~vld~~g------~~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 237 DVVIEAVG------IPATFELCQELVAPGGHIANV 265 (345)
T ss_pred CEEEECCC------CHHHHHHHHHhccCCcEEEEe
Confidence 98885431 134567777888999987654
No 355
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=78.08 E-value=4.5 Score=38.04 Aligned_cols=74 Identities=20% Similarity=0.221 Sum_probs=43.4
Q ss_pred CeEEEECCCc-CH-HHHHHHHcC-CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 124 KKIVELGSGC-GL-VGCIAALLG-AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 124 ~~VLELGcGt-G~-~~i~~a~~g-~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
++||=||||. |. ++..+|+.+ .+|+..|. ++.++.+..+.. .++++..+|-.+.....-.-..+|+|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~---------~~v~~~~vD~~d~~al~~li~~~d~V 72 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG---------GKVEALQVDAADVDALVALIKDFDLV 72 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc---------ccceeEEecccChHHHHHHHhcCCEE
Confidence 5789999963 32 222344556 68999999 566555543322 25677888765543221111345988
Q ss_pred EEccccC
Q 023543 200 LGSDVIY 206 (281)
Q Consensus 200 ia~d~iy 206 (281)
|.+-..|
T Consensus 73 In~~p~~ 79 (389)
T COG1748 73 INAAPPF 79 (389)
T ss_pred EEeCCch
Confidence 8865543
No 356
>PRK07326 short chain dehydrogenase; Provisional
Probab=77.93 E-value=21 Score=30.17 Aligned_cols=77 Identities=19% Similarity=0.208 Sum_probs=43.9
Q ss_pred cCCCeEEEECCCcCHHHHHHH----HcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC--Cc--
Q 023543 121 LHGKKIVELGSGCGLVGCIAA----LLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ--DL-- 191 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a----~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~--~~-- 191 (281)
..+++||=.|+ +|.+|..++ ..|++|++++. +..+..+.+.+... ..+.+...|..+.... .+
T Consensus 4 ~~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~-------~~~~~~~~D~~~~~~~~~~~~~ 75 (237)
T PRK07326 4 LKGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK-------GNVLGLAADVRDEADVQRAVDA 75 (237)
T ss_pred CCCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc-------CcEEEEEccCCCHHHHHHHHHH
Confidence 35789999995 565665554 35889999998 55444444333321 2455566555432110 00
Q ss_pred ---CCCCCcEEEEcccc
Q 023543 192 ---IQPLPDYVLGSDVI 205 (281)
Q Consensus 192 ---~~~~fD~Iia~d~i 205 (281)
..+++|+|+.+.-.
T Consensus 76 ~~~~~~~~d~vi~~ag~ 92 (237)
T PRK07326 76 IVAAFGGLDVLIANAGV 92 (237)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 01468988876543
No 357
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=77.86 E-value=6.9 Score=39.92 Aligned_cols=96 Identities=19% Similarity=0.215 Sum_probs=60.7
Q ss_pred CeEEEECCCc-C-HHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcC----CCC--------CCceEEEEEecCCCCC
Q 023543 124 KKIVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRH----GDL--------RGSAVVTELTWGDDPD 188 (281)
Q Consensus 124 ~~VLELGcGt-G-~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~----~~~--------~~~i~~~~l~w~~~~~ 188 (281)
++|-=||+|+ | -++..+|..|.+|++.|. ++.++.++.++..+-.. ... ..++.+. ...+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-----~~~~ 388 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-----LSYA 388 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-----CCHH
Confidence 4788899997 4 456667778999999999 77887776665543211 000 0122211 1110
Q ss_pred CCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEE
Q 023543 189 QDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTI 228 (281)
Q Consensus 189 ~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~ 228 (281)
. -...|+||-+ +.-+.+.-..+++.+..+++|++++
T Consensus 389 -~--~~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~il 424 (714)
T TIGR02437 389 -G--FDNVDIVVEA-VVENPKVKAAVLAEVEQHVREDAIL 424 (714)
T ss_pred -H--hcCCCEEEEc-CcccHHHHHHHHHHHHhhCCCCcEE
Confidence 1 1456888866 4445566788999999999988764
No 358
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=77.73 E-value=7.6 Score=34.74 Aligned_cols=97 Identities=26% Similarity=0.369 Sum_probs=54.7
Q ss_pred CeEEEECCCc-C-HHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhc----CCCCC--------CceEEEEEecCCCCC
Q 023543 124 KKIVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLR----HGDLR--------GSAVVTELTWGDDPD 188 (281)
Q Consensus 124 ~~VLELGcGt-G-~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~----~~~~~--------~~i~~~~l~w~~~~~ 188 (281)
++|.=||+|. | .++..++..|.+|++.|. ++.++.+..++..+.. ..... .++.+ .+...
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-----~~~~~ 79 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-----ATDLE 79 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-----eCCHH
Confidence 4677788885 3 345566667889999999 7777665554443310 00000 11211 11111
Q ss_pred CCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 023543 189 QDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIF 229 (281)
Q Consensus 189 ~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~ 229 (281)
.+ ...|+|+.+= .-.......+++.+...++++.+++
T Consensus 80 -~~--~~aD~Vieav-pe~~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 80 -DL--ADCDLVIEAA-TEDETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred -Hh--cCCCEEEEcC-cCCHHHHHHHHHHHHhhCCCCcEEE
Confidence 11 3568888752 1122345677888888888887654
No 359
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=77.63 E-value=40 Score=29.08 Aligned_cols=103 Identities=17% Similarity=0.139 Sum_probs=55.9
Q ss_pred cCCCeEEEECCCcC----HHHHHHHH--cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcC-
Q 023543 121 LHGKKIVELGSGCG----LVGCIAAL--LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLI- 192 (281)
Q Consensus 121 ~~~~~VLELGcGtG----~~~i~~a~--~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~- 192 (281)
.+-+.++|..|+.| .+++++|. -|.+++++-. .+.+...++.+...+.. +.++|.. ++.....+.
T Consensus 40 ~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~----~~vEfvv---g~~~e~~~~~ 112 (218)
T PF07279_consen 40 WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLS----DVVEFVV---GEAPEEVMPG 112 (218)
T ss_pred ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcccc----ccceEEe---cCCHHHHHhh
Confidence 45678999977654 33444443 3677777766 55566666666655543 2345443 332221111
Q ss_pred CCCCcEEEEccccCCCCcHH-HHHHHHHHhhCCCcEEEEEEeee
Q 023543 193 QPLPDYVLGSDVIYSEGAVG-DLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 193 ~~~fD~Iia~d~iy~~~~~~-~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
-...|+++- |+= ..++. .+++.+. ++|.|.++++....
T Consensus 113 ~~~iDF~vV-Dc~--~~d~~~~vl~~~~--~~~~GaVVV~~Na~ 151 (218)
T PF07279_consen 113 LKGIDFVVV-DCK--REDFAARVLRAAK--LSPRGAVVVCYNAF 151 (218)
T ss_pred ccCCCEEEE-eCC--chhHHHHHHHHhc--cCCCceEEEEeccc
Confidence 145687663 221 23333 5565543 56778887776543
No 360
>PRK08703 short chain dehydrogenase; Provisional
Probab=77.58 E-value=15 Score=31.23 Aligned_cols=43 Identities=30% Similarity=0.322 Sum_probs=29.1
Q ss_pred cCCCeEEEECCCcCHHHHHHH----HcCCEEEEEec-hhHHHHHHHHHH
Q 023543 121 LHGKKIVELGSGCGLVGCIAA----LLGAQVILTDL-PDRLRLLKKNIE 164 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a----~~g~~V~~tD~-~~~l~~~~~N~~ 164 (281)
+++++||=.||+ |.+|..++ ..|++|++++. ++.++.+...+.
T Consensus 4 l~~k~vlItG~s-ggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~ 51 (239)
T PRK08703 4 LSDKTILVTGAS-QGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIV 51 (239)
T ss_pred CCCCEEEEECCC-CcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHH
Confidence 578899999964 44555444 46889999998 555554444443
No 361
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=77.41 E-value=7.6 Score=35.19 Aligned_cols=99 Identities=24% Similarity=0.331 Sum_probs=51.8
Q ss_pred ccCCCeEEEECCCc-CHHHHHHHH-cCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEec---CCCCCCCcC
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAAL-LGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTW---GDDPDQDLI 192 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a~-~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w---~~~~~~~~~ 192 (281)
..++.+||=.|+|. |...+.+|+ .|++ |++++. ++..+.++. . +.. .-+.....++ .+.......
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~-~---g~~----~vi~~~~~~~~~~~~~~~~~~~ 231 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKE-L---GAT----HTVNVRTEDTPESAEKIAELLG 231 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-c---CCc----EEeccccccchhHHHHHHHHhC
Confidence 35678888888653 444444454 6877 888887 555555532 1 211 0001111110 000001122
Q ss_pred CCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 193 QPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 193 ~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
...+|+|+-+--- ...+....+.++++|.++...
T Consensus 232 ~~~~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 232 GKGPDVVIECTGA------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCCCCEEEECCCC------HHHHHHHHHHhhcCCEEEEEc
Confidence 3458988865322 336677778888888876543
No 362
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=76.92 E-value=12 Score=34.82 Aligned_cols=62 Identities=19% Similarity=0.167 Sum_probs=38.8
Q ss_pred HHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHH----c------CCEEEEEechhHHHHHHHHHHH
Q 023543 103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAAL----L------GAQVILTDLPDRLRLLKKNIEN 165 (281)
Q Consensus 103 s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~----~------g~~V~~tD~~~~l~~~~~N~~~ 165 (281)
+-.++.|+.+.++.-. ....-.++|+|+|.|.+.--+.+ + ..++..++.+.-+...+++.-.
T Consensus 59 Gella~~~~~~wq~~g-~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~ 130 (370)
T COG1565 59 GELLAEQFLQLWQELG-RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLK 130 (370)
T ss_pred HHHHHHHHHHHHHHhc-CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHh
Confidence 4567778776543211 12345899999999987653332 2 4579999996665555554433
No 363
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=76.62 E-value=11 Score=33.78 Aligned_cols=96 Identities=16% Similarity=0.110 Sum_probs=52.0
Q ss_pred cCCCeEEEECC-C-cCHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEE-ecCCCCCCCcCCCC
Q 023543 121 LHGKKIVELGS-G-CGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTEL-TWGDDPDQDLIQPL 195 (281)
Q Consensus 121 ~~~~~VLELGc-G-tG~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l-~w~~~~~~~~~~~~ 195 (281)
.+|.+||=.|+ | .|...+.+|+ .|++|++++. ++..+.++. .+.. .-+..... +|..... ...+..
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~----lGa~----~vi~~~~~~~~~~~~~-~~~~~g 207 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK----LGFD----VAFNYKTVKSLEETLK-KASPDG 207 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC----EEEeccccccHHHHHH-HhCCCC
Confidence 46889998985 3 3555555555 6889999987 555555542 2221 00100100 1110000 112346
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+|+|+- ++- ...+....++++++|+++...
T Consensus 208 vdvv~d--~~G-----~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 208 YDCYFD--NVG-----GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred eEEEEE--CCC-----HHHHHHHHHHhCcCcEEEEec
Confidence 887774 331 123466778889999987654
No 364
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=76.44 E-value=12 Score=33.45 Aligned_cols=98 Identities=18% Similarity=0.150 Sum_probs=52.0
Q ss_pred eEEEECCCc-C-HHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHh---hcCCC-C--------CCceEEEEEecCCCCCC
Q 023543 125 KIVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRLLKKNIENN---LRHGD-L--------RGSAVVTELTWGDDPDQ 189 (281)
Q Consensus 125 ~VLELGcGt-G-~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n---~~~~~-~--------~~~i~~~~l~w~~~~~~ 189 (281)
+|.=+|+|. | .++..++..|.+|++.|. ++.++.+++++... +.... . ..++.+. .....
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-----~~~~~ 77 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-----LDLKA 77 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-----CcHHH
Confidence 566788774 3 344555567889999999 77777766543322 11100 0 0011111 11111
Q ss_pred CcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 023543 190 DLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFL 230 (281)
Q Consensus 190 ~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l 230 (281)
. -...|+|+.+=. -.......++..+.+.++++.++..
T Consensus 78 ~--~~~aD~Vi~avp-e~~~~k~~~~~~l~~~~~~~~il~~ 115 (288)
T PRK09260 78 A--VADADLVIEAVP-EKLELKKAVFETADAHAPAECYIAT 115 (288)
T ss_pred h--hcCCCEEEEecc-CCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 1 134688886522 1222345677778888888776543
No 365
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=76.31 E-value=11 Score=35.53 Aligned_cols=42 Identities=26% Similarity=0.356 Sum_probs=29.5
Q ss_pred cCCCeEEEEC-CCc-CHHHHHHHHc-C--C-EEEEEec-hhHHHHHHHH
Q 023543 121 LHGKKIVELG-SGC-GLVGCIAALL-G--A-QVILTDL-PDRLRLLKKN 162 (281)
Q Consensus 121 ~~~~~VLELG-cGt-G~~~i~~a~~-g--~-~V~~tD~-~~~l~~~~~N 162 (281)
.+|.+||=+| +|. |..++.+|+. | + +|+++|. ++.++.+++.
T Consensus 174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 4577888887 453 6666666663 3 3 7999999 6778877763
No 366
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=75.86 E-value=9.4 Score=38.90 Aligned_cols=96 Identities=21% Similarity=0.233 Sum_probs=59.8
Q ss_pred CeEEEECCCc-C-HHHHHHH-HcCCEEEEEec-hhHHHHHHHHHHHhhcC----CC--------CCCceEEEEEecCCCC
Q 023543 124 KKIVELGSGC-G-LVGCIAA-LLGAQVILTDL-PDRLRLLKKNIENNLRH----GD--------LRGSAVVTELTWGDDP 187 (281)
Q Consensus 124 ~~VLELGcGt-G-~~~i~~a-~~g~~V~~tD~-~~~l~~~~~N~~~n~~~----~~--------~~~~i~~~~l~w~~~~ 187 (281)
++|.=||+|+ | -++..++ ..|.+|++.|. ++.++.++.++...-.. .. ...++.+. ...
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-----~~~ 384 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-----TDY 384 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-----CCh
Confidence 5789999997 4 3455555 67999999999 77787776665543111 00 00122222 111
Q ss_pred CCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEE
Q 023543 188 DQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTI 228 (281)
Q Consensus 188 ~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~ 228 (281)
+ .+ ...|+||-+ +.-+.+.-..+++.+.++++|++++
T Consensus 385 ~-~~--~~aDlViEa-v~E~~~~K~~v~~~le~~~~~~~il 421 (708)
T PRK11154 385 R-GF--KHADVVIEA-VFEDLALKQQMVAEVEQNCAPHTIF 421 (708)
T ss_pred H-Hh--ccCCEEeec-ccccHHHHHHHHHHHHhhCCCCcEE
Confidence 1 11 356877766 4444566778999999999988765
No 367
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=75.74 E-value=28 Score=31.06 Aligned_cols=93 Identities=22% Similarity=0.260 Sum_probs=50.5
Q ss_pred cCCCeEEEECCC-cCHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSG-CGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcG-tG~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
.++.+||-+||| .|...+.+++ .|.+|+.++. ++..+.+++ . +.. .+ .... ....... ....+|
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~-~---g~~-----~~--~~~~-~~~~~~~-~~~~~d 227 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARK-L---GAD-----EV--VDSG-AELDEQA-AAGGAD 227 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-h---CCc-----EE--eccC-CcchHHh-ccCCCC
Confidence 467789999886 3544444444 6889999888 555555532 1 111 01 0000 0000000 124689
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+++.+-.- ...+..+.+.++++|.++...
T Consensus 228 ~vi~~~~~------~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 228 VILVTVVS------GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred EEEECCCc------HHHHHHHHHhcccCCEEEEEC
Confidence 88854221 335666677888888876553
No 368
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=75.02 E-value=17 Score=33.32 Aligned_cols=93 Identities=20% Similarity=0.221 Sum_probs=47.5
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC-CCcCCCCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD-QDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~-~~~~~~~f 196 (281)
.+|.+||=.|+|. |...+.+|+ .|++|++++. ++....+.+ ..+.. . .++..+... .... ..+
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~---~~Ga~-----~----~i~~~~~~~~~~~~-~~~ 245 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALE---HLGAD-----D----YLVSSDAAEMQEAA-DSL 245 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH---hcCCc-----E----EecCCChHHHHHhc-CCC
Confidence 3678898887653 555554554 6888888877 544333322 12221 0 011000000 0011 257
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
|+++-+ +-. ...+....+.++++|+++...
T Consensus 246 D~vid~--~g~----~~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 246 DYIIDT--VPV----FHPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred cEEEEC--CCc----hHHHHHHHHHhccCCEEEEEC
Confidence 877643 211 234555667788999876654
No 369
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=74.99 E-value=5.7 Score=37.10 Aligned_cols=39 Identities=36% Similarity=0.503 Sum_probs=26.0
Q ss_pred cCCCeEEEECCCc-CHHHHHHH-HcCCEEEEEec-hhHHHHH
Q 023543 121 LHGKKIVELGSGC-GLVGCIAA-LLGAQVILTDL-PDRLRLL 159 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a-~~g~~V~~tD~-~~~l~~~ 159 (281)
.++++|+=+|+|. |...+..+ .+|++|+.+|. ++.++.+
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l 206 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQL 206 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHH
Confidence 3567899998873 44444333 36889999999 5555444
No 370
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=74.95 E-value=12 Score=33.53 Aligned_cols=31 Identities=32% Similarity=0.623 Sum_probs=22.3
Q ss_pred cCCCeEEEECCCcCHH-HH--HHHHcCCE-EEEEec
Q 023543 121 LHGKKIVELGSGCGLV-GC--IAALLGAQ-VILTDL 152 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~-~i--~~a~~g~~-V~~tD~ 152 (281)
.+++++|=+|+| |.- ++ .++..|++ |+.++.
T Consensus 124 ~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R 158 (289)
T PRK12548 124 VKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNI 158 (289)
T ss_pred cCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeC
Confidence 578899999997 532 22 34457875 999988
No 371
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=74.70 E-value=4.6 Score=36.73 Aligned_cols=112 Identities=21% Similarity=0.265 Sum_probs=59.8
Q ss_pred CCeEEEECCCcC--HHHHHHHHc------------C--------CEEEEEec-h--hHHHHHHHHHHHhhcC--------
Q 023543 123 GKKIVELGSGCG--LVGCIAALL------------G--------AQVILTDL-P--DRLRLLKKNIENNLRH-------- 169 (281)
Q Consensus 123 ~~~VLELGcGtG--~~~i~~a~~------------g--------~~V~~tD~-~--~~l~~~~~N~~~n~~~-------- 169 (281)
..+||-||-|.| +++++.+.. + -+|+++|+ + .+++.+...+..+-..
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 469999999997 566654440 1 26999999 5 4688888777766111
Q ss_pred ----CCCCCceEEEEEecCCCCCCCc----CCCCCcEEEEccc---cCC--CCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 170 ----GDLRGSAVVTELTWGDDPDQDL----IQPLPDYVLGSDV---IYS--EGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 170 ----~~~~~~i~~~~l~w~~~~~~~~----~~~~fD~Iia~d~---iy~--~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
....-++.|.+.|.-......+ ..+..++|-..-+ +|. ...--.|+..+...+++|..++|++..
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSp 244 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSP 244 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence 0001123333333221111110 0112233222111 111 223456777778888999999888644
No 372
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=74.55 E-value=11 Score=34.97 Aligned_cols=98 Identities=18% Similarity=0.106 Sum_probs=50.3
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEE---ecCCCCCCCcCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTEL---TWGDDPDQDLIQ 193 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l---~w~~~~~~~~~~ 193 (281)
..|.+||=.|+|. |...+.+|+ .|+ +|++++. ++..+.+++ .+.. ..+..... +|.+.......+
T Consensus 202 ~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~----~g~~----~~v~~~~~~~~~~~~~v~~~~~g 273 (384)
T cd08265 202 RPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKE----MGAD----YVFNPTKMRDCLSGEKVMEVTKG 273 (384)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC----EEEcccccccccHHHHHHHhcCC
Confidence 4677888777653 444444444 687 7999998 554444443 2211 00111111 111111111223
Q ss_pred CCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 194 PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 194 ~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
..+|+|+.+.- . ....+....++|+++|+++..
T Consensus 274 ~gvDvvld~~g--~---~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 274 WGADIQVEAAG--A---PPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred CCCCEEEECCC--C---cHHHHHHHHHHHHcCCEEEEE
Confidence 56898886421 1 134556666777888887654
No 373
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=74.42 E-value=4.9 Score=37.81 Aligned_cols=36 Identities=39% Similarity=0.695 Sum_probs=26.6
Q ss_pred eEEEECCCc-CH-HHHHHHHcCCEEEEEec-hhHHHHHH
Q 023543 125 KIVELGSGC-GL-VGCIAALLGAQVILTDL-PDRLRLLK 160 (281)
Q Consensus 125 ~VLELGcGt-G~-~~i~~a~~g~~V~~tD~-~~~l~~~~ 160 (281)
+|-=+|+|. |+ .|.++|..|.+|+++|+ +.-++.++
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln 40 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLN 40 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHh
Confidence 455577775 64 36678889999999999 66676664
No 374
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=74.20 E-value=7.3 Score=35.22 Aligned_cols=94 Identities=18% Similarity=0.214 Sum_probs=50.1
Q ss_pred CeEEEECCC--cCHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcE
Q 023543 124 KKIVELGSG--CGLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 124 ~~VLELGcG--tG~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~ 198 (281)
.+||=.|++ .|...+.+|+ .|+ +|++++. ++..+.+++. .+.. .-+.....+|.+... .+.+..+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa~----~vi~~~~~~~~~~i~-~~~~~gvd~ 227 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGFD----AAINYKTDNVAERLR-ELCPEGVDV 227 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCCc----EEEECCCCCHHHHHH-HHCCCCceE
Confidence 799999872 3555555555 688 7999988 5555555432 2221 000000001110000 112346898
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
|+.+ +-. . .+....++|+++|+++...
T Consensus 228 vid~--~g~----~-~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 228 YFDN--VGG----E-ISDTVISQMNENSHIILCG 254 (345)
T ss_pred EEEC--CCc----H-HHHHHHHHhccCCEEEEEe
Confidence 8743 211 2 2466677889999877544
No 375
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=73.97 E-value=6.4 Score=40.29 Aligned_cols=96 Identities=17% Similarity=0.202 Sum_probs=59.7
Q ss_pred CeEEEECCCc-C-HHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCC----CC--------CCceEEEEEecCCCCC
Q 023543 124 KKIVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHG----DL--------RGSAVVTELTWGDDPD 188 (281)
Q Consensus 124 ~~VLELGcGt-G-~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~----~~--------~~~i~~~~l~w~~~~~ 188 (281)
++|-=||+|+ | -++..++..|.+|++.|. ++.++.+..++..+.... .. ..++.+.. + .+
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~----~~ 410 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTL-D----YS 410 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC-C----HH
Confidence 4788899997 4 455667778999999999 788877766665442110 00 01222111 1 11
Q ss_pred CCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEE
Q 023543 189 QDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTI 228 (281)
Q Consensus 189 ~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~ 228 (281)
. -...|+||-+ +.-+.+.-..+++.+..+++|++++
T Consensus 411 -~--~~~aDlViEA-v~E~l~~K~~vf~~l~~~~~~~~il 446 (737)
T TIGR02441 411 -G--FKNADMVIEA-VFEDLSLKHKVIKEVEAVVPPHCII 446 (737)
T ss_pred -H--hccCCeehhh-ccccHHHHHHHHHHHHhhCCCCcEE
Confidence 1 1346777755 3444556778999999999988765
No 376
>PRK08324 short chain dehydrogenase; Validated
Probab=73.90 E-value=23 Score=35.78 Aligned_cols=77 Identities=22% Similarity=0.198 Sum_probs=44.2
Q ss_pred cCCCeEEEECCCcCHHHHHHH----HcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC--Cc--
Q 023543 121 LHGKKIVELGSGCGLVGCIAA----LLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ--DL-- 191 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a----~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~--~~-- 191 (281)
..|++||=.|++. .+|..++ ..|++|+++|. ++.++.+...+... .++.+...|..+.... .+
T Consensus 420 l~gk~vLVTGasg-gIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~-------~~v~~v~~Dvtd~~~v~~~~~~ 491 (681)
T PRK08324 420 LAGKVALVTGAAG-GIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP-------DRALGVACDVTDEAAVQAAFEE 491 (681)
T ss_pred CCCCEEEEecCCC-HHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc-------CcEEEEEecCCCHHHHHHHHHH
Confidence 4678999999754 4454443 46889999999 55554443332221 2455666665432110 00
Q ss_pred ---CCCCCcEEEEcccc
Q 023543 192 ---IQPLPDYVLGSDVI 205 (281)
Q Consensus 192 ---~~~~fD~Iia~d~i 205 (281)
..+++|+|+.+--+
T Consensus 492 ~~~~~g~iDvvI~~AG~ 508 (681)
T PRK08324 492 AALAFGGVDIVVSNAGI 508 (681)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 12468999876554
No 377
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=73.76 E-value=40 Score=33.55 Aligned_cols=84 Identities=13% Similarity=0.003 Sum_probs=46.7
Q ss_pred ccCCCeEEEECCCcCHHHHHHH----HcCCEEEEEec-hhHHHHHHHHHHHhhcC---CCCCCceEEEEEecCCCCCCCc
Q 023543 120 LLHGKKIVELGSGCGLVGCIAA----LLGAQVILTDL-PDRLRLLKKNIENNLRH---GDLRGSAVVTELTWGDDPDQDL 191 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a----~~g~~V~~tD~-~~~l~~~~~N~~~n~~~---~~~~~~i~~~~l~w~~~~~~~~ 191 (281)
...|++||=.|+ +|.+|..++ +.|++|++++. .+.+..+..++..+.+. .....++.+...|..+.....-
T Consensus 77 ~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~ 155 (576)
T PLN03209 77 TKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGP 155 (576)
T ss_pred cCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHH
Confidence 457889999996 465666544 46889999988 55554444444332211 0001246667766654221111
Q ss_pred CCCCCcEEEEccc
Q 023543 192 IQPLPDYVLGSDV 204 (281)
Q Consensus 192 ~~~~fD~Iia~d~ 204 (281)
.-...|+||.+--
T Consensus 156 aLggiDiVVn~AG 168 (576)
T PLN03209 156 ALGNASVVICCIG 168 (576)
T ss_pred HhcCCCEEEEccc
Confidence 1245798887643
No 378
>PRK13699 putative methylase; Provisional
Probab=73.74 E-value=15 Score=31.80 Aligned_cols=42 Identities=7% Similarity=0.035 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHh-cCCeEEE
Q 023543 211 VGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAM-KDFVIGR 255 (281)
Q Consensus 211 ~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~-~~f~v~~ 255 (281)
....+..+.++|||||.+++....+... .|...+. .||.+..
T Consensus 51 ~~~~l~E~~RVLKpgg~l~if~~~~~~~---~~~~al~~~GF~l~~ 93 (227)
T PRK13699 51 LQPACNEMYRVLKKDALMVSFYGWNRVD---RFMAAWKNAGFSVVG 93 (227)
T ss_pred HHHHHHHHHHHcCCCCEEEEEeccccHH---HHHHHHHHCCCEEee
Confidence 4677888999999999877654434322 2444454 4887543
No 379
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=73.40 E-value=10 Score=34.66 Aligned_cols=115 Identities=26% Similarity=0.278 Sum_probs=67.5
Q ss_pred hHHHHHHHHhhhhc-cC-----ccccCCCeEEEECCCcCHHHHHHHH----cCCEEEEEec-hhHHHHHHHHHHHhhcCC
Q 023543 102 SGVVLGKFLEHAVD-SG-----MLLLHGKKIVELGSGCGLVGCIAAL----LGAQVILTDL-PDRLRLLKKNIENNLRHG 170 (281)
Q Consensus 102 ~s~~la~~l~~~~~-~~-----~~~~~~~~VLELGcGtG~~~i~~a~----~g~~V~~tD~-~~~l~~~~~N~~~n~~~~ 170 (281)
++..-+.||.+.-. .+ -.-+...+|.=||-| .+|.-+|+ +|++|+..|+ .+.++.+..-..
T Consensus 141 a~q~Ga~~lek~~GG~GvllgGvpGV~~~kv~iiGGG--vvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~------ 212 (371)
T COG0686 141 AAQAGAYYLEKTNGGKGVLLGGVPGVLPAKVVVLGGG--VVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG------ 212 (371)
T ss_pred HHHHHHHHHHhccCCceeEecCCCCCCCccEEEECCc--cccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC------
Confidence 34555667665311 00 012445677778766 44444443 7899999999 566665543211
Q ss_pred CCCCceEEEEEecCCCCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEE
Q 023543 171 DLRGSAVVTELTWGDDPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFL 230 (281)
Q Consensus 171 ~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l 230 (281)
.++...-- +.......-.+.|++|++=.+--.....-..+.+.+.++||+.++=
T Consensus 213 ---~rv~~~~s---t~~~iee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 213 ---GRVHTLYS---TPSNIEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred ---ceeEEEEc---CHHHHHHHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEE
Confidence 23333221 1111111125689999988887777777788888899999987653
No 380
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=72.92 E-value=34 Score=28.95 Aligned_cols=34 Identities=29% Similarity=0.331 Sum_probs=26.2
Q ss_pred ccCCCeEEEECCCc-C-HHHHHHHHcCC-EEEEEech
Q 023543 120 LLHGKKIVELGSGC-G-LVGCIAALLGA-QVILTDLP 153 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G-~~~i~~a~~g~-~V~~tD~~ 153 (281)
.++.++|+=+|||. | .++..+++.|. +++.+|..
T Consensus 18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 36788999999995 4 45667777887 69998875
No 381
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=72.66 E-value=7.1 Score=37.12 Aligned_cols=89 Identities=18% Similarity=0.171 Sum_probs=54.3
Q ss_pred ccCCCeEEEECCCc-CHHHHHHH-HcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 120 LLHGKKIVELGSGC-GLVGCIAA-LLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~~a-~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.+.|++|+=+|||. |......+ ..|++|+.+|. +..+..++. .+.. +..+ . ..+ ..+
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~----~G~~--------~~~~--~----e~v--~~a 258 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM----EGYE--------VMTM--E----EAV--KEG 258 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh----cCCE--------EccH--H----HHH--cCC
Confidence 46899999999995 65444344 37899999999 655555543 2221 1111 0 111 346
Q ss_pred cEEEEccccCCCCcHHHHHH-HHHHhhCCCcEEEEEEee
Q 023543 197 DYVLGSDVIYSEGAVGDLLD-TLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~-~l~~ll~~~g~~~l~~~~ 234 (281)
|+|+.+-- ....+. ...+.+++||+++.+...
T Consensus 259 DVVI~atG------~~~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 259 DIFVTTTG------NKDIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred CEEEECCC------CHHHHHHHHHhcCCCCcEEEEeCCC
Confidence 88886532 134444 447789999988777643
No 382
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=72.47 E-value=13 Score=33.82 Aligned_cols=95 Identities=15% Similarity=0.113 Sum_probs=48.8
Q ss_pred CCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 122 HGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 122 ~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
++.+||=+|+|. |...+.+|+ .|+ +|++++. ++..+.+++ .+.. .-+......|.+.... .....+|
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~----~~~~~~~~~~~~~~~~-~~~~~~d 245 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA----AGAD----VVVNGSDPDAAKRIIK-AAGGGVD 245 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCc----EEecCCCccHHHHHHH-HhCCCCc
Confidence 678898887653 444444444 688 6888887 555555432 1211 0000001111000000 1122688
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
+++.+--- ...+....+.|+++|.++..
T Consensus 246 ~vid~~g~------~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 246 AVIDFVNN------SATASLAFDILAKGGKLVLV 273 (350)
T ss_pred EEEECCCC------HHHHHHHHHHhhcCCeEEEE
Confidence 88754321 34577777788888887654
No 383
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=72.44 E-value=8 Score=35.35 Aligned_cols=97 Identities=27% Similarity=0.238 Sum_probs=49.4
Q ss_pred CCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecC---CCCCCCcCCC
Q 023543 122 HGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWG---DDPDQDLIQP 194 (281)
Q Consensus 122 ~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~---~~~~~~~~~~ 194 (281)
++.+||=.|+|. |...+.+|+ .|+ +|++++. ++..+.+++ .+.. ..+.....++. ..........
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~----~vi~~~~~~~~~~~~~i~~~~~~~ 248 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE----FGAD----ATIDIDELPDPQRRAIVRDITGGR 248 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCC----eEEcCcccccHHHHHHHHHHhCCC
Confidence 678888888652 333343443 688 8999987 555554432 2221 00000000000 0000001124
Q ss_pred CCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 195 LPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 195 ~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
++|+|+-+-- . ...+....++++++|.++...
T Consensus 249 ~~d~vid~~g--~----~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 249 GADVVIEASG--H----PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred CCcEEEECCC--C----hHHHHHHHHHhccCCEEEEEc
Confidence 6898875421 1 345566678888999877554
No 384
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=72.38 E-value=31 Score=32.94 Aligned_cols=95 Identities=14% Similarity=0.126 Sum_probs=56.6
Q ss_pred HHHHHHHcCCE--EEEEec--hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC-------CcCCCCCcEEEE--c
Q 023543 136 VGCIAALLGAQ--VILTDL--PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ-------DLIQPLPDYVLG--S 202 (281)
Q Consensus 136 ~~i~~a~~g~~--V~~tD~--~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~-------~~~~~~fD~Iia--~ 202 (281)
++..+.+.|.+ ++++|. |.+++.++.+.+..++. |....-+..+.. ......||+||. +
T Consensus 120 LA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~--------~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTA 191 (451)
T COG0541 120 LAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVP--------FFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTA 191 (451)
T ss_pred HHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCc--------eecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 33444455665 688888 67788888888876544 233211111100 012356898885 3
Q ss_pred cccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChh
Q 023543 203 DVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDS 238 (281)
Q Consensus 203 d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~ 238 (281)
.=++..+.+-.=+..++..++|.=++++.+..-.++
T Consensus 192 GRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQd 227 (451)
T COG0541 192 GRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQD 227 (451)
T ss_pred CcccccHHHHHHHHHHHhhcCCCeEEEEEecccchH
Confidence 333334444445566777899999999988776654
No 385
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=72.29 E-value=15 Score=33.63 Aligned_cols=95 Identities=19% Similarity=0.173 Sum_probs=54.7
Q ss_pred CeEEEECCCc-C-HHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcC---CCC-----CCceEEEEEecCCCCCCCcC
Q 023543 124 KKIVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRH---GDL-----RGSAVVTELTWGDDPDQDLI 192 (281)
Q Consensus 124 ~~VLELGcGt-G-~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~---~~~-----~~~i~~~~l~w~~~~~~~~~ 192 (281)
++|-=||+|+ | -++..++..|.+|++.|. ++.++.++..+...... ... ..++.+. ..... .
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-----~~l~~--a 80 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-----ATIEA--C 80 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-----CCHHH--H
Confidence 5688888885 4 345556678999999999 77776655544322100 000 0111111 11100 0
Q ss_pred CCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCc
Q 023543 193 QPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQT 226 (281)
Q Consensus 193 ~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g 226 (281)
-...|+|+-+ +.-+.+.-..+++.+.++++|+.
T Consensus 81 v~~aDlViEa-vpE~l~vK~~lf~~l~~~~~~~a 113 (321)
T PRK07066 81 VADADFIQES-APEREALKLELHERISRAAKPDA 113 (321)
T ss_pred hcCCCEEEEC-CcCCHHHHHHHHHHHHHhCCCCe
Confidence 1346877765 44445556788888888888887
No 386
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=72.25 E-value=18 Score=32.68 Aligned_cols=98 Identities=19% Similarity=0.205 Sum_probs=54.3
Q ss_pred CCeEEEECCCc--CHHHHHHHHcCCEEEEEechhHHHHHHHHHHHhhcCCC-CCCceEEEEEecCCCCCCCcCCCCCcEE
Q 023543 123 GKKIVELGSGC--GLVGCIAALLGAQVILTDLPDRLRLLKKNIENNLRHGD-LRGSAVVTELTWGDDPDQDLIQPLPDYV 199 (281)
Q Consensus 123 ~~~VLELGcGt--G~~~i~~a~~g~~V~~tD~~~~l~~~~~N~~~n~~~~~-~~~~i~~~~l~w~~~~~~~~~~~~fD~I 199 (281)
..+|+=+|+|. |.+|..+++.|.+|+++.... .+. +..+++... ..+...+.........+ ..+++|+|
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~-~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~D~v 76 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD-YEA----VRENGLQVDSVHGDFHLPPVQAYRSAE---DMPPCDWV 76 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC-HHH----HHhCCeEEEeCCCCeeecCceEEcchh---hcCCCCEE
Confidence 35788999885 456667777888898888733 222 233332210 00111111111111111 12578999
Q ss_pred EEccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 200 LGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 200 ia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
+.+=-.|. ...+++.+..++++++.++..
T Consensus 77 ilavK~~~---~~~~~~~l~~~~~~~~~iv~l 105 (313)
T PRK06249 77 LVGLKTTA---NALLAPLIPQVAAPDAKVLLL 105 (313)
T ss_pred EEEecCCC---hHhHHHHHhhhcCCCCEEEEe
Confidence 87644332 366888888889998876544
No 387
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=72.24 E-value=15 Score=33.29 Aligned_cols=99 Identities=24% Similarity=0.137 Sum_probs=49.1
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++.+||=.|+|. |...+.+|+ +|.+ |++++. ++..+.++. .+.. ..+.....++.+..........+
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~----~~v~~~~~~~~~~l~~~~~~~~~ 231 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKK----MGAT----YVVNPFKEDVVKEVADLTDGEGV 231 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc----EEEcccccCHHHHHHHhcCCCCC
Confidence 4677777766542 333333444 6876 888877 444444432 1211 00111111111100001123468
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
|+|+-+-.- ...+..+.+.|+++|.++....
T Consensus 232 d~vld~~g~------~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 232 DVFLEMSGA------PKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred CEEEECCCC------HHHHHHHHHhhcCCCEEEEEcc
Confidence 988765211 3456667778889998766543
No 388
>PRK06139 short chain dehydrogenase; Provisional
Probab=71.97 E-value=13 Score=34.04 Aligned_cols=79 Identities=19% Similarity=0.205 Sum_probs=48.9
Q ss_pred cCCCeEEEECCCcCH---HHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC-c----
Q 023543 121 LHGKKIVELGSGCGL---VGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD-L---- 191 (281)
Q Consensus 121 ~~~~~VLELGcGtG~---~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~-~---- 191 (281)
.++++||=.|++.|+ ++..++..|++|++++. ++.++.+.+.+...+ .++.+...|..+..... +
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g------~~~~~~~~Dv~d~~~v~~~~~~~ 78 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALG------AEVLVVPTDVTDADQVKALATQA 78 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEeeCCCHHHHHHHHHHH
Confidence 567899999986653 22334457999999998 666766666665443 24556666665422110 0
Q ss_pred --CCCCCcEEEEcccc
Q 023543 192 --IQPLPDYVLGSDVI 205 (281)
Q Consensus 192 --~~~~fD~Iia~d~i 205 (281)
...++|++|.+--+
T Consensus 79 ~~~~g~iD~lVnnAG~ 94 (330)
T PRK06139 79 ASFGGRIDVWVNNVGV 94 (330)
T ss_pred HHhcCCCCEEEECCCc
Confidence 12578999876543
No 389
>PRK10458 DNA cytosine methylase; Provisional
Probab=71.96 E-value=8.2 Score=37.31 Aligned_cols=41 Identities=22% Similarity=0.283 Sum_probs=33.9
Q ss_pred CCeEEEECCCcCHHHHHHHHcCCE-EEEEec-hhHHHHHHHHH
Q 023543 123 GKKIVELGSGCGLVGCIAALLGAQ-VILTDL-PDRLRLLKKNI 163 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~~g~~-V~~tD~-~~~l~~~~~N~ 163 (281)
.-+++||-||.|-+++.+-..|.+ |.++|+ +.+.+.-+.|.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence 459999999999888777778887 788999 77777777774
No 390
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=71.93 E-value=13 Score=32.34 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=24.5
Q ss_pred cCCCeEEEECCCc-C-HHHHHHHHcCC-EEEEEech
Q 023543 121 LHGKKIVELGSGC-G-LVGCIAALLGA-QVILTDLP 153 (281)
Q Consensus 121 ~~~~~VLELGcGt-G-~~~i~~a~~g~-~V~~tD~~ 153 (281)
+++.+||=+|||. | .+...+++.|. +++.+|..
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 5778999999984 4 34556677776 68888863
No 391
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=71.64 E-value=57 Score=27.87 Aligned_cols=121 Identities=21% Similarity=0.179 Sum_probs=77.2
Q ss_pred cCCCeEEEECCCcCHHHHHHHH----cC--CEEEEEechh-HH-HHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC---
Q 023543 121 LHGKKIVELGSGCGLVGCIAAL----LG--AQVILTDLPD-RL-RLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ--- 189 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~----~g--~~V~~tD~~~-~l-~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~--- 189 (281)
.+...|+|.|.-.|-.++..|. .| .+|+++|++- .+ ..+++ . .++.+.+-+ ..++
T Consensus 68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~-----p~i~f~egs---s~dpai~ 133 (237)
T COG3510 68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------V-----PDILFIEGS---STDPAIA 133 (237)
T ss_pred cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------C-----CCeEEEeCC---CCCHHHH
Confidence 5678999999999877776664 35 5799999832 22 22222 1 356666633 2221
Q ss_pred ----CcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeC---------------hhHHHHHHHHHhcC
Q 023543 190 ----DLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRN---------------DSVLEYFLEAAMKD 250 (281)
Q Consensus 190 ----~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~---------------~~~~~~fl~~~~~~ 250 (281)
.+.+.+.-+.++-|.-|+....-.-++.+..+|..|..+++-+..-+ ....+.|++...+.
T Consensus 134 eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~~~~p~~~g~gP~~AVe~ylr~~p~~ 213 (237)
T COG3510 134 EQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLPGPVLPWRFGGGPYEAVEAYLREFPQD 213 (237)
T ss_pred HHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCCCcccchhcCCChHHHHHHHHHhCCcc
Confidence 12334446777778887777777788888899999988877654321 12456677666556
Q ss_pred CeEEE
Q 023543 251 FVIGR 255 (281)
Q Consensus 251 f~v~~ 255 (281)
|++..
T Consensus 214 yEiD~ 218 (237)
T COG3510 214 YEIDT 218 (237)
T ss_pred cccch
Confidence 66543
No 392
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=71.57 E-value=60 Score=28.89 Aligned_cols=86 Identities=20% Similarity=0.130 Sum_probs=48.5
Q ss_pred cCCCeEEEECCCcCHHHHHH---HH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 121 LHGKKIVELGSGCGLVGCIA---AL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~---a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
.++.+||=.||| .+|.++ ++ .|.+|+.++. ++..+.++ ..+.. ..++.... ....
T Consensus 166 ~~~~~vlV~g~g--~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~----~~g~~---------~~~~~~~~-----~~~~ 225 (329)
T cd08298 166 KPGQRLGLYGFG--ASAHLALQIARYQGAEVFAFTRSGEHQELAR----ELGAD---------WAGDSDDL-----PPEP 225 (329)
T ss_pred CCCCEEEEECCc--HHHHHHHHHHHHCCCeEEEEcCChHHHHHHH----HhCCc---------EEeccCcc-----CCCc
Confidence 456777778765 444433 33 6889988887 54444442 22211 00110010 2346
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+|+++.+... ...+....++++++|.+++..
T Consensus 226 vD~vi~~~~~------~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 226 LDAAIIFAPV------GALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred ccEEEEcCCc------HHHHHHHHHHhhcCCEEEEEc
Confidence 8888765332 356777888888998877643
No 393
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=71.52 E-value=10 Score=34.86 Aligned_cols=93 Identities=24% Similarity=0.351 Sum_probs=50.8
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCC-CCC---CcC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDD-PDQ---DLI 192 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~-~~~---~~~ 192 (281)
.++++||=.|+|. |...+.+|+ .|+ .|+++|. ++..+.+++ .+.. .+ ++..+. ... ...
T Consensus 185 ~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~----~g~~-------~~--i~~~~~~~~~~v~~~~ 251 (365)
T cd08278 185 RPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE----LGAT-------HV--INPKEEDLVAAIREIT 251 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc-------EE--ecCCCcCHHHHHHHHh
Confidence 4578898888753 444444454 688 5999998 555555543 1111 01 110110 000 011
Q ss_pred CCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 193 QPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 193 ~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
...+|+|+-+--- ...+....+.++++|.++...
T Consensus 252 ~~~~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 252 GGGVDYALDTTGV------PAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred CCCCcEEEECCCC------cHHHHHHHHHhccCCEEEEeC
Confidence 3568988754211 345667777788888877654
No 394
>PRK07109 short chain dehydrogenase; Provisional
Probab=71.37 E-value=49 Score=30.15 Aligned_cols=78 Identities=22% Similarity=0.217 Sum_probs=47.4
Q ss_pred cCCCeEEEECCCcCHHHHH----HHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC-c---
Q 023543 121 LHGKKIVELGSGCGLVGCI----AALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD-L--- 191 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~----~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~-~--- 191 (281)
.++++||=.|++.| +|.. ++..|++|++++. ++.++.+...+...+ .++.+...|..+..+.. .
T Consensus 6 l~~k~vlITGas~g-IG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g------~~~~~v~~Dv~d~~~v~~~~~~ 78 (334)
T PRK07109 6 IGRQVVVITGASAG-VGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG------GEALAVVADVADAEAVQAAADR 78 (334)
T ss_pred CCCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC------CcEEEEEecCCCHHHHHHHHHH
Confidence 56789999997655 3443 4457899999998 566665555554432 24556666654432110 0
Q ss_pred ---CCCCCcEEEEcccc
Q 023543 192 ---IQPLPDYVLGSDVI 205 (281)
Q Consensus 192 ---~~~~fD~Iia~d~i 205 (281)
.-+++|++|.+--+
T Consensus 79 ~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 79 AEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHHCCCCCEEEECCCc
Confidence 01468998876544
No 395
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=71.18 E-value=12 Score=33.32 Aligned_cols=96 Identities=17% Similarity=0.127 Sum_probs=52.1
Q ss_pred cCCCeEEEECCC--cCHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSG--CGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcG--tG~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.+|.+||=.|++ .|...+.+|+ .|++|++++. ++..+.++. .+.. .-+.....+|..... ...+..+
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~----~Ga~----~vi~~~~~~~~~~v~-~~~~~gv 212 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE----LGFD----AVFNYKTVSLEEALK-EAAPDGI 212 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC----EEEeCCCccHHHHHH-HHCCCCc
Confidence 467899988853 3555554554 7889999887 565666553 2221 001101111111000 1123468
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
|+|+. ++- ...+....++++++|.++...
T Consensus 213 d~vld--~~g-----~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 213 DCYFD--NVG-----GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred EEEEE--CCC-----HHHHHHHHHhhccCCEEEEEc
Confidence 87774 331 245677778889999876543
No 396
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=71.18 E-value=29 Score=31.23 Aligned_cols=95 Identities=15% Similarity=0.177 Sum_probs=50.2
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
..+.+||=.|||. |...+.+|+ .|++|++++. ++.++.+++ .+.. ..+.....++...... . ..+|
T Consensus 162 ~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~----~g~~----~~i~~~~~~~~~~~~~-~--~~~d 230 (333)
T cd08296 162 KPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARK----LGAH----HYIDTSKEDVAEALQE-L--GGAK 230 (333)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----cCCc----EEecCCCccHHHHHHh-c--CCCC
Confidence 4678999999653 444444444 6889999988 555665543 1211 0000011011000000 1 3578
Q ss_pred EEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 198 YVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 198 ~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+++.+-. ....+....+.++++|.++...
T Consensus 231 ~vi~~~g------~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 231 LILATAP------NAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred EEEECCC------chHHHHHHHHHcccCCEEEEEe
Confidence 8885321 1345666677888888876543
No 397
>PRK06701 short chain dehydrogenase; Provisional
Probab=70.87 E-value=49 Score=29.32 Aligned_cols=78 Identities=18% Similarity=0.158 Sum_probs=43.2
Q ss_pred ccCCCeEEEECCCcCHHHHH----HHHcCCEEEEEec-hh-HHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC--Cc
Q 023543 120 LLHGKKIVELGSGCGLVGCI----AALLGAQVILTDL-PD-RLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ--DL 191 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~----~a~~g~~V~~tD~-~~-~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~--~~ 191 (281)
.++++++|=.|++.|+ |.. +++.|++|++++. +. .++.....+...+ .++.+...|..+.... .+
T Consensus 43 ~~~~k~iLItGasggI-G~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~~~ 115 (290)
T PRK06701 43 KLKGKVALITGGDSGI-GRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEG------VKCLLIPGDVSDEAFCKDAV 115 (290)
T ss_pred CCCCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC------CeEEEEEccCCCHHHHHHHH
Confidence 3678999999976553 443 4457899999987 32 2333333332221 2455666665432211 00
Q ss_pred -----CCCCCcEEEEccc
Q 023543 192 -----IQPLPDYVLGSDV 204 (281)
Q Consensus 192 -----~~~~fD~Iia~d~ 204 (281)
...++|+||.+..
T Consensus 116 ~~i~~~~~~iD~lI~~Ag 133 (290)
T PRK06701 116 EETVRELGRLDILVNNAA 133 (290)
T ss_pred HHHHHHcCCCCEEEECCc
Confidence 0146798886543
No 398
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=70.83 E-value=8.1 Score=35.66 Aligned_cols=41 Identities=37% Similarity=0.602 Sum_probs=33.2
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHH
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKK 161 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~ 161 (281)
.+|.+|.=+|||. |+.++..|+ .|+ +++++|+ ++.++++++
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~ 228 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK 228 (366)
T ss_pred CCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh
Confidence 4688999999996 888887776 466 5999999 778888874
No 399
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=70.59 E-value=85 Score=28.61 Aligned_cols=47 Identities=15% Similarity=0.099 Sum_probs=35.4
Q ss_pred cCCCeEEEECCCcCHHHHHHH-HcC--CEEEEEec-hhHHHHHHHHHHHhh
Q 023543 121 LHGKKIVELGSGCGLVGCIAA-LLG--AQVILTDL-PDRLRLLKKNIENNL 167 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a-~~g--~~V~~tD~-~~~l~~~~~N~~~n~ 167 (281)
.+++..||.=-|.|--+-.+. +++ .+++++|. +.+++.+++....++
T Consensus 22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~ 72 (314)
T COG0275 22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD 72 (314)
T ss_pred CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC
Confidence 456899998888775555444 443 46999999 899999998876643
No 400
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=70.38 E-value=15 Score=32.84 Aligned_cols=93 Identities=18% Similarity=0.215 Sum_probs=50.9
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC---CCcCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD---QDLIQ 193 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~---~~~~~ 193 (281)
.++.+||-+|+|. |...+.+|+ .|.+ |++++. ++..+.+++ .+.. .+...+ +... .....
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~-------~~~~~~--~~~~~~~~~~~~ 224 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKK----LGAT-------ETVDPS--REDPEAQKEDNP 224 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCe-------EEecCC--CCCHHHHHHhcC
Confidence 4678999998652 444444444 6776 888888 665555532 1111 111100 0000 01123
Q ss_pred CCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 194 PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 194 ~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
..+|+++.+--- ...+....++++++|.++...
T Consensus 225 ~~vd~v~~~~~~------~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 225 YGFDVVIEATGV------PKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CCCcEEEECCCC------hHHHHHHHHHHhcCCEEEEEe
Confidence 568988864211 356666778888999877554
No 401
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=70.09 E-value=51 Score=29.17 Aligned_cols=96 Identities=26% Similarity=0.272 Sum_probs=53.2
Q ss_pred eEEEECCCc-C-HHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCcEEEE
Q 023543 125 KIVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPDYVLG 201 (281)
Q Consensus 125 ~VLELGcGt-G-~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD~Iia 201 (281)
+|+=+|||. | .++..+++.|.+|+++|. ++.++.+++ ++.... .+... ....... +.. ...++|+|+.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~----~g~~~~-~~~~~-~~~~~~~--~~~-~~~~~d~vil 72 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNE----NGLRLE-DGEIT-VPVLAAD--DPA-ELGPQDLVIL 72 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHH----cCCccc-CCcee-ecccCCC--Chh-HcCCCCEEEE
Confidence 567788875 3 445555667889999998 655554443 232210 01111 0000001 110 1167898887
Q ss_pred ccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 202 SDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 202 ~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+=-- ...+.+++.+...+.+++.+++..
T Consensus 73 a~k~---~~~~~~~~~l~~~l~~~~~iv~~~ 100 (304)
T PRK06522 73 AVKA---YQLPAALPSLAPLLGPDTPVLFLQ 100 (304)
T ss_pred eccc---ccHHHHHHHHhhhcCCCCEEEEec
Confidence 6443 346888888888888877665443
No 402
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=69.86 E-value=35 Score=31.93 Aligned_cols=104 Identities=25% Similarity=0.298 Sum_probs=52.5
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEE-EEecCCCCCCCcCCCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVT-ELTWGDDPDQDLIQPL 195 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~-~l~w~~~~~~~~~~~~ 195 (281)
..+.+||=.|+|. |...+.+|+ .|++ |+.+|. ++.++.+++- +.. .+... .-++.+..........
T Consensus 184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----Ga~-----~v~~~~~~~~~~~v~~~~~~~g 254 (393)
T TIGR02819 184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----GCE-----TVDLSKDATLPEQIEQILGEPE 254 (393)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----CCe-----EEecCCcccHHHHHHHHcCCCC
Confidence 4677877777764 555554554 6876 566787 5566666531 111 00000 0000000000111246
Q ss_pred CcEEEEccccC------C--CCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 196 PDYVLGSDVIY------S--EGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 196 fD~Iia~d~iy------~--~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
+|+++-+--.. . .......++...++++++|.+++...
T Consensus 255 ~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 255 VDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 89887532211 0 11112467777789999998877554
No 403
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=69.77 E-value=60 Score=28.98 Aligned_cols=125 Identities=15% Similarity=0.127 Sum_probs=61.7
Q ss_pred HHHHHHhhhhccCccccCCCeEEEECCCc--C-HHHHHHHH----cCCEEEEEechhHHHHHHHHHHHhhcCCCCCCceE
Q 023543 105 VLGKFLEHAVDSGMLLLHGKKIVELGSGC--G-LVGCIAAL----LGAQVILTDLPDRLRLLKKNIENNLRHGDLRGSAV 177 (281)
Q Consensus 105 ~la~~l~~~~~~~~~~~~~~~VLELGcGt--G-~~~i~~a~----~g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~ 177 (281)
.|++||... ......+.+||-||+|+ | .+|-...+ .|+-++-.|+.+-+. +...
T Consensus 47 QLCqYln~~---tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~vS----------------Da~~ 107 (299)
T PF06460_consen 47 QLCQYLNKT---TLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYVS----------------DADQ 107 (299)
T ss_dssp HHHHHHTTS--------TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-----------------SSSE
T ss_pred HHHHHhccc---cEeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhcc----------------ccCC
Confidence 478888652 11234678999999998 5 45655554 255566667633211 0111
Q ss_pred EEEEecCCCCCCCcCCCCCcEEEEcccc------------CCCCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHH
Q 023543 178 VTELTWGDDPDQDLIQPLPDYVLGSDVI------------YSEGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLE 245 (281)
Q Consensus 178 ~~~l~w~~~~~~~~~~~~fD~Iia~d~i------------y~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~ 245 (281)
....|. ....++.+||+|++ |+. -...-..-+...++..|+-||.+.+-....+-. .=+.
T Consensus 108 ~~~~Dc----~t~~~~~k~DlIiS-DmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw~---~~Ly 179 (299)
T PF06460_consen 108 SIVGDC----RTYMPPDKFDLIIS-DMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHSWN---AQLY 179 (299)
T ss_dssp EEES-G----GGEEESS-EEEEEE-----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS-----HHHH
T ss_pred ceeccc----cccCCCCcccEEEE-ecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeeccccc---HHHH
Confidence 122111 12224567898885 332 013346778888888999999987765544332 1244
Q ss_pred HHhcCCeEEEE
Q 023543 246 AAMKDFVIGRV 256 (281)
Q Consensus 246 ~~~~~f~v~~i 256 (281)
.+.+.|..+.+
T Consensus 180 el~~~F~~wt~ 190 (299)
T PF06460_consen 180 ELMGYFSWWTC 190 (299)
T ss_dssp HHHTTEEEEEE
T ss_pred HHHhhcccEEE
Confidence 56677877766
No 404
>PRK08265 short chain dehydrogenase; Provisional
Probab=68.99 E-value=60 Score=28.01 Aligned_cols=75 Identities=19% Similarity=0.179 Sum_probs=43.2
Q ss_pred cCCCeEEEECCCcCHHHHH----HHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC--Cc--
Q 023543 121 LHGKKIVELGSGCGLVGCI----AALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ--DL-- 191 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~----~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~--~~-- 191 (281)
.+++++|=.|++.| +|.. +++.|++|+++|. .+.++.+.+.+ + .++.+...|..+.... .+
T Consensus 4 ~~~k~vlItGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~------~~~~~~~~Dl~~~~~~~~~~~~ 73 (261)
T PRK08265 4 LAGKVAIVTGGATL-IGAAVARALVAAGARVAIVDIDADNGAAVAASL---G------ERARFIATDITDDAAIERAVAT 73 (261)
T ss_pred CCCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C------CeeEEEEecCCCHHHHHHHHHH
Confidence 46889999997655 3443 4456999999998 44333322211 1 2466667776543211 00
Q ss_pred ---CCCCCcEEEEcccc
Q 023543 192 ---IQPLPDYVLGSDVI 205 (281)
Q Consensus 192 ---~~~~fD~Iia~d~i 205 (281)
...+.|+++.+--.
T Consensus 74 ~~~~~g~id~lv~~ag~ 90 (261)
T PRK08265 74 VVARFGRVDILVNLACT 90 (261)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 11467988876544
No 405
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=68.85 E-value=20 Score=31.82 Aligned_cols=48 Identities=23% Similarity=0.413 Sum_probs=41.9
Q ss_pred ccCCCeEEEECCCcCHHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhh
Q 023543 120 LLHGKKIVELGSGCGLVGCIAALLGAQVILTDL-PDRLRLLKKNIENNL 167 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~ 167 (281)
...+..|||-=+|+|..++++...|-++++.|+ ++-++.+.+.+....
T Consensus 220 s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~~ 268 (302)
T COG0863 220 SFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEGL 268 (302)
T ss_pred CCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhhc
Confidence 467899999999999999999999999999999 777888877776653
No 406
>PRK11524 putative methyltransferase; Provisional
Probab=67.73 E-value=10 Score=33.98 Aligned_cols=25 Identities=12% Similarity=0.243 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEeee
Q 023543 211 VGDLLDTLLQLCGTQTTIFLAGELR 235 (281)
Q Consensus 211 ~~~ll~~l~~ll~~~g~~~l~~~~r 235 (281)
+..++..+.++|+++|.+++....+
T Consensus 59 l~~~l~~~~rvLK~~G~i~i~~~~~ 83 (284)
T PRK11524 59 LYEWIDECHRVLKKQGTMYIMNSTE 83 (284)
T ss_pred HHHHHHHHHHHhCCCcEEEEEcCch
Confidence 3678899999999999998865443
No 407
>PRK07806 short chain dehydrogenase; Provisional
Probab=67.69 E-value=68 Score=27.18 Aligned_cols=104 Identities=22% Similarity=0.167 Sum_probs=53.3
Q ss_pred cCCCeEEEECCCcCHHHHHHH----HcCCEEEEEec-h-hHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC--Cc-
Q 023543 121 LHGKKIVELGSGCGLVGCIAA----LLGAQVILTDL-P-DRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ--DL- 191 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a----~~g~~V~~tD~-~-~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~--~~- 191 (281)
.+++++|=.|+..| +|..++ ..|.+|++++. . ..++.+...+...+ .++.+...|..+..+. .+
T Consensus 4 ~~~k~vlItGasgg-iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~------~~~~~~~~D~~~~~~~~~~~~ 76 (248)
T PRK07806 4 LPGKTALVTGSSRG-IGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG------GRASAVGADLTDEESVAALMD 76 (248)
T ss_pred CCCcEEEEECCCCc-HHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC------CceEEEEcCCCCHHHHHHHHH
Confidence 46789999997544 454444 46889988876 3 23333333332211 2455566665432211 00
Q ss_pred ----CCCCCcEEEEccccCCC-------------CcHHHHHHHHHHhhCCCcEEEEE
Q 023543 192 ----IQPLPDYVLGSDVIYSE-------------GAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 192 ----~~~~fD~Iia~d~iy~~-------------~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
...++|+++.+-..... ...-.+++.+..+++.+|.+++.
T Consensus 77 ~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 77 TAREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred HHHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 01357887754322110 11345666776666655554433
No 408
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=67.55 E-value=23 Score=31.97 Aligned_cols=98 Identities=22% Similarity=0.228 Sum_probs=50.0
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.+|++||=.|+|. |...+.+|+ .|+ +|++++. ++..+.+++ .+.. .-+....-++.+..........+
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----lg~~----~~~~~~~~~~~~~~~~~~~~~~~ 233 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARK----MGAT----RAVNVAKEDLRDVMAELGMTEGF 233 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCc----EEecCccccHHHHHHHhcCCCCC
Confidence 3678888887653 444444444 677 6888876 544554442 1211 00000111111100011123467
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
|+|+.+-. -...+..+.+.++++|.++...
T Consensus 234 d~v~d~~g------~~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 234 DVGLEMSG------APSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred CEEEECCC------CHHHHHHHHHHHhcCCEEEEEe
Confidence 88876322 1446666777888999877664
No 409
>PRK08339 short chain dehydrogenase; Provisional
Probab=67.34 E-value=37 Score=29.55 Aligned_cols=79 Identities=23% Similarity=0.173 Sum_probs=46.8
Q ss_pred cCCCeEEEECCCcCH---HHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC------C
Q 023543 121 LHGKKIVELGSGCGL---VGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ------D 190 (281)
Q Consensus 121 ~~~~~VLELGcGtG~---~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~------~ 190 (281)
++++++|=.|++.|+ ++..++..|++|+++|. ++.++.+.+.+.... ..++.+...|..+..+. .
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~i~~~~~~~ 80 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-----NVDVSYIVADLTKREDLERTVKEL 80 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-----CCceEEEEecCCCHHHHHHHHHHH
Confidence 578999999987764 23344457999999998 555555554443321 12466666665543211 0
Q ss_pred cCCCCCcEEEEccc
Q 023543 191 LIQPLPDYVLGSDV 204 (281)
Q Consensus 191 ~~~~~fD~Iia~d~ 204 (281)
..-.++|+++.+--
T Consensus 81 ~~~g~iD~lv~nag 94 (263)
T PRK08339 81 KNIGEPDIFFFSTG 94 (263)
T ss_pred HhhCCCcEEEECCC
Confidence 01146788886543
No 410
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=66.95 E-value=30 Score=31.25 Aligned_cols=97 Identities=25% Similarity=0.169 Sum_probs=48.2
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++.+||=.|+|. |...+.+++ .|. +|++++- ++....+++ .+.. ..+....-++. .........++
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~----~~~~~~~~~~~-~~~~~~~~~~v 232 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKK----MGAD----VVINPREEDVV-EVKSVTDGTGV 232 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCcc----eeeCcccccHH-HHHHHcCCCCC
Confidence 4677887777642 333333343 677 6888866 444444442 1211 00101111110 00011123568
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
|+|+.+--- ......+.+.|+++|.++...
T Consensus 233 d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 233 DVVLEMSGN------PKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred CEEEECCCC------HHHHHHHHHHhccCCEEEEEc
Confidence 988764221 345566677888999876554
No 411
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=66.79 E-value=21 Score=32.04 Aligned_cols=40 Identities=28% Similarity=0.243 Sum_probs=23.8
Q ss_pred CCCeEEEE--CCCc-CHHHHHHHH-cCCEEEEEec-hhHHHHHHH
Q 023543 122 HGKKIVEL--GSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLKK 161 (281)
Q Consensus 122 ~~~~VLEL--GcGt-G~~~i~~a~-~g~~V~~tD~-~~~l~~~~~ 161 (281)
.+.++|=+ |+|. |...+.+|+ .|++|++++. ++..+.+++
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~ 186 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKK 186 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 45555544 4432 444444444 6889999988 666666654
No 412
>PRK08267 short chain dehydrogenase; Provisional
Probab=66.62 E-value=53 Score=28.19 Aligned_cols=73 Identities=25% Similarity=0.245 Sum_probs=42.3
Q ss_pred CeEEEECCCcCHHHHHH----HHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC-----c-C
Q 023543 124 KKIVELGSGCGLVGCIA----ALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD-----L-I 192 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~----a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~-----~-~ 192 (281)
+++|=.|++.| +|..+ +..|++|++++. ++.++.+...+. + .++.+...|..+..... . .
T Consensus 2 k~vlItGasg~-iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~------~~~~~~~~D~~~~~~v~~~~~~~~~ 72 (260)
T PRK08267 2 KSIFITGAASG-IGRATALLFAAEGWRVGAYDINEAGLAALAAELG--A------GNAWTGALDVTDRAAWDAALADFAA 72 (260)
T ss_pred cEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc--C------CceEEEEecCCCHHHHHHHHHHHHH
Confidence 56888886644 45444 446889999998 555554443322 1 24667777765432110 0 0
Q ss_pred --CCCCcEEEEcccc
Q 023543 193 --QPLPDYVLGSDVI 205 (281)
Q Consensus 193 --~~~fD~Iia~d~i 205 (281)
..++|+|+.+.-+
T Consensus 73 ~~~~~id~vi~~ag~ 87 (260)
T PRK08267 73 ATGGRLDVLFNNAGI 87 (260)
T ss_pred HcCCCCCEEEECCCC
Confidence 3568998875544
No 413
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=66.56 E-value=29 Score=29.31 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=22.5
Q ss_pred cCCCeEEEECCCc-C-HHHHHHHHcCC-EEEEEech
Q 023543 121 LHGKKIVELGSGC-G-LVGCIAALLGA-QVILTDLP 153 (281)
Q Consensus 121 ~~~~~VLELGcGt-G-~~~i~~a~~g~-~V~~tD~~ 153 (281)
.++++||=+|||. | -+...++..|. +++.+|..
T Consensus 19 L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 19 LRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 5788999999885 2 23334555676 58888863
No 414
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=66.37 E-value=7.8 Score=37.30 Aligned_cols=123 Identities=16% Similarity=0.170 Sum_probs=68.1
Q ss_pred CCeEEEECCCcCHHHHHHHH-cC-CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEE-EecC-CCCCCCcCCCCCc
Q 023543 123 GKKIVELGSGCGLVGCIAAL-LG-AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTE-LTWG-DDPDQDLIQPLPD 197 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a~-~g-~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~-l~w~-~~~~~~~~~~~fD 197 (281)
++.+|=+|=|.|.++..+.. ++ +.++++.+ |+|++.++.+...-.-. +.++.+.. ++.- +.....-.+..||
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~---r~~V~i~dGl~~~~~~~k~~~~~~~~d 372 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSD---RNKVHIADGLDFLQRTAKSQQEDICPD 372 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhh---hhhhhHhhchHHHHHHhhccccccCCc
Confidence 44556666666655544433 33 67999999 99999998776433211 00111110 0000 0000001235678
Q ss_pred EEEE----ccccCC------CCcHHHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHHhc
Q 023543 198 YVLG----SDVIYS------EGAVGDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAAMK 249 (281)
Q Consensus 198 ~Iia----~d~iy~------~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~~~ 249 (281)
+++. .| .+- .-..+.++..++..+.|.|.+++-...|+..........+++
T Consensus 373 vl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~~ 433 (482)
T KOG2352|consen 373 VLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLAK 433 (482)
T ss_pred EEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhhhh
Confidence 7764 44 322 122567788888899999999888888886544434444433
No 415
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=66.23 E-value=19 Score=32.94 Aligned_cols=97 Identities=14% Similarity=0.094 Sum_probs=48.2
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++.+||=.|+|. |...+.+|+ .|++ |+.++. ++..+.++. .+.. .-+.....+|.........+..+
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~----~g~~----~v~~~~~~~~~~~l~~~~~~~~~ 257 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKE----LGAT----HTVNAAKEDAVAAIREITGGRGV 257 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCc----eEecCCcccHHHHHHHHhCCCCC
Confidence 4577888776541 333333343 6777 888887 555555432 2211 00000111111000001123568
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
|+|+.+ +.. ...+..+.++++++|.++..
T Consensus 258 d~vld~--vg~----~~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 258 DVVVEA--LGK----PETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred CEEEEe--CCC----HHHHHHHHHHHhcCCEEEEE
Confidence 988854 322 13566677888888887654
No 416
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=66.14 E-value=27 Score=33.03 Aligned_cols=101 Identities=21% Similarity=0.238 Sum_probs=53.5
Q ss_pred CeEEEECCCc-CHH-HHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcC-C---------CCCCceEEEEEecCCCCCCC
Q 023543 124 KKIVELGSGC-GLV-GCIAALLGAQVILTDL-PDRLRLLKKNIENNLRH-G---------DLRGSAVVTELTWGDDPDQD 190 (281)
Q Consensus 124 ~~VLELGcGt-G~~-~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~-~---------~~~~~i~~~~l~w~~~~~~~ 190 (281)
.+|==+|=|. |++ +..+|+.|.+|+|+|+ +..++.+.+- ++... . ...++.+.. .++. .
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G--~~~i~e~~~~~~v~~~v~~g~lraT-----td~~-~ 81 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRG--ESYIEEPDLDEVVKEAVESGKLRAT-----TDPE-E 81 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCC--cceeecCcHHHHHHHHHhcCCceEe-----cChh-h
Confidence 4666666665 653 4566678999999999 6666655311 00000 0 000111111 0100 0
Q ss_pred cCCCCCcEEEEcccc----CCC---CcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 191 LIQPLPDYVLGSDVI----YSE---GAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 191 ~~~~~fD~Iia~d~i----y~~---~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
+ ...|++|-+=.. |.. +.+....+++...|++|-.+++-...
T Consensus 82 l--~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~ 130 (436)
T COG0677 82 L--KECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTT 130 (436)
T ss_pred c--ccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCC
Confidence 1 145666553332 222 23677788888899999887776543
No 417
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.71 E-value=25 Score=29.52 Aligned_cols=61 Identities=13% Similarity=0.099 Sum_probs=42.6
Q ss_pred EEEEEecCCCCCCC-cCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEeeeCh
Q 023543 177 VVTELTWGDDPDQD-LIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGELRND 237 (281)
Q Consensus 177 ~~~~l~w~~~~~~~-~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~~ 237 (281)
.|.-+|...+.+.. -....||+||+-......+-+.+-..+++++.++.-.++++...+-.
T Consensus 116 eFvfYDyN~p~dlp~~lk~~fdiivaDPPfL~~eCl~Kts~tik~L~r~~~kvilCtGeime 177 (217)
T KOG3350|consen 116 EFVFYDYNCPLDLPDELKAHFDIIVADPPFLSEECLAKTSETIKRLQRNQKKVILCTGEIME 177 (217)
T ss_pred eeEEeccCCCCCCHHHHHhcccEEEeCCccccchhhhhhHHHHHHHhcCCceEEEechhHhH
Confidence 35666665544421 12357999998777767777888889999999998888887554433
No 418
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=65.70 E-value=21 Score=30.45 Aligned_cols=27 Identities=0% Similarity=0.023 Sum_probs=22.9
Q ss_pred CCcHHHHHHHHHHhhCCCcEEEEEEee
Q 023543 208 EGAVGDLLDTLLQLCGTQTTIFLAGEL 234 (281)
Q Consensus 208 ~~~~~~ll~~l~~ll~~~g~~~l~~~~ 234 (281)
......+...+.+.|||||++++..+.
T Consensus 142 ~~~A~~vna~vf~~LKPGGv~~V~dH~ 168 (238)
T COG4798 142 PATAAKVNAAVFKALKPGGVYLVEDHR 168 (238)
T ss_pred cchHHHHHHHHHHhcCCCcEEEEEecc
Confidence 566788999999999999998887654
No 419
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=65.69 E-value=14 Score=29.17 Aligned_cols=41 Identities=22% Similarity=0.301 Sum_probs=26.2
Q ss_pred EECCCcC--HHHHHHH--H--cCCEEEEEec-hhHHHHHHHH--HHHhhc
Q 023543 128 ELGSGCG--LVGCIAA--L--LGAQVILTDL-PDRLRLLKKN--IENNLR 168 (281)
Q Consensus 128 ELGcGtG--~~~i~~a--~--~g~~V~~tD~-~~~l~~~~~N--~~~n~~ 168 (281)
|+||+.| ...+... . .+.+|+++|. +..++.+++| +..|..
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~ 50 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDK 50 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCC
Confidence 8999999 3333332 2 3467999999 8889999999 666643
No 420
>PRK07063 short chain dehydrogenase; Provisional
Probab=65.68 E-value=36 Score=29.22 Aligned_cols=80 Identities=21% Similarity=0.202 Sum_probs=47.2
Q ss_pred cCCCeEEEECCCcCHHHHH----HHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC-c---
Q 023543 121 LHGKKIVELGSGCGLVGCI----AALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD-L--- 191 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~----~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~-~--- 191 (281)
+++++||=.|++.|+ |.. ++..|++|+++|. ++.++.+...+..... ..++.+...|..+..... +
T Consensus 5 l~~k~vlVtGas~gI-G~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~ 79 (260)
T PRK07063 5 LAGKVALVTGAAQGI-GAAIARAFAREGAAVALADLDAALAERAAAAIARDVA----GARVLAVPADVTDAASVAAAVAA 79 (260)
T ss_pred cCCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccC----CceEEEEEccCCCHHHHHHHHHH
Confidence 578899999987653 443 4457899999998 5555555544443211 134666666654432110 0
Q ss_pred ---CCCCCcEEEEcccc
Q 023543 192 ---IQPLPDYVLGSDVI 205 (281)
Q Consensus 192 ---~~~~fD~Iia~d~i 205 (281)
..+++|+++.+.-+
T Consensus 80 ~~~~~g~id~li~~ag~ 96 (260)
T PRK07063 80 AEEAFGPLDVLVNNAGI 96 (260)
T ss_pred HHHHhCCCcEEEECCCc
Confidence 11468988876543
No 421
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=65.60 E-value=41 Score=28.69 Aligned_cols=34 Identities=26% Similarity=0.323 Sum_probs=25.1
Q ss_pred ccCCCeEEEECCCc-C-HHHHHHHHcCC-EEEEEech
Q 023543 120 LLHGKKIVELGSGC-G-LVGCIAALLGA-QVILTDLP 153 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G-~~~i~~a~~g~-~V~~tD~~ 153 (281)
.++..+|+=+|||. | .++..+++.|. +++.+|..
T Consensus 25 ~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 25 KLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 36788999999984 4 45556677776 58888874
No 422
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=65.56 E-value=50 Score=29.65 Aligned_cols=97 Identities=22% Similarity=0.235 Sum_probs=50.5
Q ss_pred CeEEEECCCc-C-HHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHh-hcCCCC------CCceEEEEEecCCCCCCCcCC
Q 023543 124 KKIVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRLLKKNIENN-LRHGDL------RGSAVVTELTWGDDPDQDLIQ 193 (281)
Q Consensus 124 ~~VLELGcGt-G-~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n-~~~~~~------~~~i~~~~l~w~~~~~~~~~~ 193 (281)
++|.=+|+|. | .++..++..|.+|++.|. ++.++.++..+... +..... ..++.+. ..... .-
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----~~~~~--~~ 77 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRME-----AGLAA--AV 77 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEe-----CCHHH--Hh
Confidence 3576788875 3 344455567889999999 67777666654322 110000 0011111 11110 01
Q ss_pred CCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEE
Q 023543 194 PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTI 228 (281)
Q Consensus 194 ~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~ 228 (281)
...|+|+.+=. -.......++..+..+++++..+
T Consensus 78 ~~aDlVi~av~-~~~~~~~~v~~~l~~~~~~~~ii 111 (311)
T PRK06130 78 SGADLVIEAVP-EKLELKRDVFARLDGLCDPDTIF 111 (311)
T ss_pred ccCCEEEEecc-CcHHHHHHHHHHHHHhCCCCcEE
Confidence 34688876521 11223567777787777766543
No 423
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=65.11 E-value=13 Score=34.34 Aligned_cols=41 Identities=32% Similarity=0.466 Sum_probs=29.4
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHH
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKK 161 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~ 161 (281)
..|.+||=.|||. |..++.+|+ .|+ +|+++|. ++.++.+++
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 4688999999864 555555555 687 7999998 666666653
No 424
>PRK06181 short chain dehydrogenase; Provisional
Probab=64.96 E-value=53 Score=28.21 Aligned_cols=75 Identities=23% Similarity=0.250 Sum_probs=41.3
Q ss_pred CeEEEECCCcCHHHHHHH----HcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC--c-----
Q 023543 124 KKIVELGSGCGLVGCIAA----LLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD--L----- 191 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a----~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~--~----- 191 (281)
++||=.|+. |.+|..++ ..|.+|++++. +...+.+...+...+ .++.+...|..+..... +
T Consensus 2 ~~vlVtGas-g~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dl~~~~~~~~~~~~~~~ 74 (263)
T PRK06181 2 KVVIITGAS-EGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG------GEALVVPTDVSDAEACERLIEAAVA 74 (263)
T ss_pred CEEEEecCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 567877854 44555443 46889999998 544444444433321 24556666654322100 0
Q ss_pred CCCCCcEEEEcccc
Q 023543 192 IQPLPDYVLGSDVI 205 (281)
Q Consensus 192 ~~~~fD~Iia~d~i 205 (281)
.-++.|+|+.+-..
T Consensus 75 ~~~~id~vi~~ag~ 88 (263)
T PRK06181 75 RFGGIDILVNNAGI 88 (263)
T ss_pred HcCCCCEEEECCCc
Confidence 01367999876544
No 425
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=64.34 E-value=26 Score=31.60 Aligned_cols=98 Identities=16% Similarity=0.133 Sum_probs=52.1
Q ss_pred ccCCCeEEEECCC--cCHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEE-EecCCCCCCCcCCC
Q 023543 120 LLHGKKIVELGSG--CGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTE-LTWGDDPDQDLIQP 194 (281)
Q Consensus 120 ~~~~~~VLELGcG--tG~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~-l~w~~~~~~~~~~~ 194 (281)
..+|.+||=.|+. .|...+-+|+ +|++|++++. ++..+.++..+ +.. ..+.... -++.+... .....
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~l---Ga~----~vi~~~~~~~~~~~i~-~~~~~ 220 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKL---GFD----DAFNYKEEPDLDAALK-RYFPN 220 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCc----eeEEcCCcccHHHHHH-HhCCC
Confidence 3568899999873 2444444454 7899998887 66566655322 221 0011000 01111000 11124
Q ss_pred CCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 195 LPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 195 ~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
.+|+|+-+ +- ...+....+.++++|.++...
T Consensus 221 gvd~v~d~--~g-----~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 221 GIDIYFDN--VG-----GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred CcEEEEEC--CC-----HHHHHHHHHHhccCcEEEEec
Confidence 68877743 21 245566778888999877543
No 426
>PRK06940 short chain dehydrogenase; Provisional
Probab=64.26 E-value=78 Score=27.71 Aligned_cols=75 Identities=17% Similarity=0.209 Sum_probs=41.9
Q ss_pred CeEEEECCCcCHHHHHHHH---cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC------CcCC
Q 023543 124 KKIVELGSGCGLVGCIAAL---LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ------DLIQ 193 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~---~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~------~~~~ 193 (281)
+.+|=-|+| | +|..+++ .|++|+++|. ++.++.+.+.+...+ .++.+...|..+.... ....
T Consensus 3 k~~lItGa~-g-IG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dv~d~~~i~~~~~~~~~~ 74 (275)
T PRK06940 3 EVVVVIGAG-G-IGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG------FDVSTQEVDVSSRESVKALAATAQTL 74 (275)
T ss_pred CEEEEECCC-h-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEEeecCCHHHHHHHHHHHHhc
Confidence 456666763 4 5665553 5788999998 555544443333221 2466667776543210 0012
Q ss_pred CCCcEEEEccccC
Q 023543 194 PLPDYVLGSDVIY 206 (281)
Q Consensus 194 ~~fD~Iia~d~iy 206 (281)
+++|+++.+--+.
T Consensus 75 g~id~li~nAG~~ 87 (275)
T PRK06940 75 GPVTGLVHTAGVS 87 (275)
T ss_pred CCCCEEEECCCcC
Confidence 5689999866544
No 427
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=64.10 E-value=24 Score=31.64 Aligned_cols=96 Identities=17% Similarity=0.088 Sum_probs=48.3
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cC-CEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LG-AQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g-~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++.+||=+|+|. |...+.+|+ .| .+|++++. ++..+.+++ .+.. ..+..... +...........++
T Consensus 166 ~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~~----~~~~~~~~-~~~~i~~~~~~~~~ 236 (340)
T cd05284 166 DPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAER----LGAD----HVLNASDD-VVEEVRELTGGRGA 236 (340)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH----hCCc----EEEcCCcc-HHHHHHHHhCCCCC
Confidence 4678999999663 333333333 56 68888887 555554432 2221 00000000 10000001122468
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
|+|+.+--- ...+....+.++++|.++..
T Consensus 237 dvvld~~g~------~~~~~~~~~~l~~~g~~i~~ 265 (340)
T cd05284 237 DAVIDFVGS------DETLALAAKLLAKGGRYVIV 265 (340)
T ss_pred CEEEEcCCC------HHHHHHHHHHhhcCCEEEEE
Confidence 988753221 34566667777888887654
No 428
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=64.03 E-value=15 Score=32.16 Aligned_cols=102 Identities=15% Similarity=0.165 Sum_probs=57.3
Q ss_pred ccCC-CeEEEECCCcCHHHHHHHHc--------CC---EEEEEechhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCC
Q 023543 120 LLHG-KKIVELGSGCGLVGCIAALL--------GA---QVILTDLPDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDP 187 (281)
Q Consensus 120 ~~~~-~~VLELGcGtG~~~i~~a~~--------g~---~V~~tD~~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~ 187 (281)
+++| ++|+||.+-.|..+-++++. +. +++++|+..|..+ .-+.-.+.|.....
T Consensus 38 i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI---------------~GV~qlq~DIT~~s 102 (294)
T KOG1099|consen 38 IFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI---------------EGVIQLQGDITSAS 102 (294)
T ss_pred HHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc---------------CceEEeecccCCHh
Confidence 4555 69999999999999988862 12 3999999555110 11212222221110
Q ss_pred C-----CCcCCCCCcEEEE---cccc--CCC------CcHHHHHHHHHHhhCCCcEEEEEEeeeCh
Q 023543 188 D-----QDLIQPLPDYVLG---SDVI--YSE------GAVGDLLDTLLQLCGTQTTIFLAGELRND 237 (281)
Q Consensus 188 ~-----~~~~~~~fD~Iia---~d~i--y~~------~~~~~ll~~l~~ll~~~g~~~l~~~~r~~ 237 (281)
. ..+-+.+.|+|++ .|+. |.. ..+-..+......|+|||.+ ++-..|..
T Consensus 103 tae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~F-VaKifRg~ 167 (294)
T KOG1099|consen 103 TAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSF-VAKIFRGR 167 (294)
T ss_pred HHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCee-ehhhhccC
Confidence 0 0134568899987 3432 221 11233444555678999986 44445543
No 429
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=63.91 E-value=28 Score=31.31 Aligned_cols=94 Identities=22% Similarity=0.169 Sum_probs=46.8
Q ss_pred cCCCeEEEECCCcCHHHHH---HHH-cCC-EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCC
Q 023543 121 LHGKKIVELGSGCGLVGCI---AAL-LGA-QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQP 194 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~---~a~-~g~-~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~ 194 (281)
.++.+||=.|+| .+|.+ +|+ +|. +|++++. ++....+++ -+.. .+.....+|...........
T Consensus 166 ~~~~~vlI~g~g--~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~~-----~~~~~~~~~~~~l~~~~~~~ 234 (344)
T cd08284 166 RPGDTVAVIGCG--PVGLCAVLSAQVLGAARVFAVDPVPERLERAAA----LGAE-----PINFEDAEPVERVREATEGR 234 (344)
T ss_pred ccCCEEEEECCc--HHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----hCCe-----EEecCCcCHHHHHHHHhCCC
Confidence 467888888754 44443 343 685 7999977 444444332 1211 01001111110000011224
Q ss_pred CCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 195 LPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 195 ~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
.+|+|+.+--- ...+....+.++++|.++..
T Consensus 235 ~~dvvid~~~~------~~~~~~~~~~l~~~g~~v~~ 265 (344)
T cd08284 235 GADVVLEAVGG------AAALDLAFDLVRPGGVISSV 265 (344)
T ss_pred CCCEEEECCCC------HHHHHHHHHhcccCCEEEEE
Confidence 68988764211 34566666777888876654
No 430
>PRK05867 short chain dehydrogenase; Provisional
Probab=63.82 E-value=37 Score=29.08 Aligned_cols=80 Identities=24% Similarity=0.223 Sum_probs=46.8
Q ss_pred cCCCeEEEECCCcCH---HHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC-----Cc
Q 023543 121 LHGKKIVELGSGCGL---VGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ-----DL 191 (281)
Q Consensus 121 ~~~~~VLELGcGtG~---~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~-----~~ 191 (281)
++++++|=.|++.|+ ++..++..|++|++++. .+.++.+...+...+ .++.+...|..+.... ..
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~D~~~~~~~~~~~~~~ 80 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG------GKVVPVCCDVSQHQQVTSMLDQV 80 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC------CeEEEEEccCCCHHHHHHHHHHH
Confidence 578999999987663 22334457999999998 555555544444322 2455566665432110 00
Q ss_pred --CCCCCcEEEEccccC
Q 023543 192 --IQPLPDYVLGSDVIY 206 (281)
Q Consensus 192 --~~~~fD~Iia~d~iy 206 (281)
...++|+++.+.-+.
T Consensus 81 ~~~~g~id~lv~~ag~~ 97 (253)
T PRK05867 81 TAELGGIDIAVCNAGII 97 (253)
T ss_pred HHHhCCCCEEEECCCCC
Confidence 114689988765443
No 431
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=63.80 E-value=7.1 Score=34.31 Aligned_cols=98 Identities=21% Similarity=0.208 Sum_probs=52.1
Q ss_pred cCCCeEEEECCCc-CHHHH-HHHHcCC-EEEEEechhH-HHHHHHHHHHhhcCCC-------------CCCceEEEE--E
Q 023543 121 LHGKKIVELGSGC-GLVGC-IAALLGA-QVILTDLPDR-LRLLKKNIENNLRHGD-------------LRGSAVVTE--L 181 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i-~~a~~g~-~V~~tD~~~~-l~~~~~N~~~n~~~~~-------------~~~~i~~~~--l 181 (281)
++..+|+=+|+|- |-... ++++-|. +++.+|..++ +.+..+.+..-.-.+. ....+++.. .
T Consensus 28 l~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~ 107 (263)
T COG1179 28 LKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAIND 107 (263)
T ss_pred HhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHh
Confidence 5778999999985 65444 6667775 6899888543 4444333322211100 112333333 3
Q ss_pred ecCCCCCCCcCCCCCcEEEE-ccccCCCCcHHHHHHHHHHh
Q 023543 182 TWGDDPDQDLIQPLPDYVLG-SDVIYSEGAVGDLLDTLLQL 221 (281)
Q Consensus 182 ~w~~~~~~~~~~~~fD~Iia-~d~iy~~~~~~~ll~~l~~l 221 (281)
-|....-..+....||+||- .|.+ ..--.|+..+.+.
T Consensus 108 f~t~en~~~~~~~~~DyvIDaiD~v---~~Kv~Li~~c~~~ 145 (263)
T COG1179 108 FITEENLEDLLSKGFDYVIDAIDSV---RAKVALIAYCRRN 145 (263)
T ss_pred hhCHhHHHHHhcCCCCEEEEchhhh---HHHHHHHHHHHHc
Confidence 34333333455678999983 4443 3334455555543
No 432
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=63.34 E-value=72 Score=28.49 Aligned_cols=30 Identities=20% Similarity=0.204 Sum_probs=22.6
Q ss_pred CCCeEEEECCCcCHHHHHHHH----cCCEEEEEec
Q 023543 122 HGKKIVELGSGCGLVGCIAAL----LGAQVILTDL 152 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~----~g~~V~~tD~ 152 (281)
.+++||=.| |+|.+|..+++ .|.+|++++.
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r 37 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVR 37 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEc
Confidence 478999999 56777776654 5888888766
No 433
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=62.94 E-value=39 Score=32.99 Aligned_cols=96 Identities=19% Similarity=0.220 Sum_probs=55.6
Q ss_pred CeEEEECCCc-C-HHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCC------------CceEEEEEecCCCCC
Q 023543 124 KKIVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLR------------GSAVVTELTWGDDPD 188 (281)
Q Consensus 124 ~~VLELGcGt-G-~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~------------~~i~~~~l~w~~~~~ 188 (281)
++|-=||+|+ | -++..++..|.+|++.|. ++.++.+..+++..-...... .++.... ...
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~-----~~~ 82 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVE-----ALA 82 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC-----CHH
Confidence 4677789885 4 355666778999999999 777877766555331110000 1122211 111
Q ss_pred CCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEE
Q 023543 189 QDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTI 228 (281)
Q Consensus 189 ~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~ 228 (281)
.+ ...|+||-+ +.-+...-..++..+..+++++.++
T Consensus 83 -~~--~~aDlViEa-v~E~~~vK~~vf~~l~~~~~~~ail 118 (507)
T PRK08268 83 -DL--ADCDLVVEA-IVERLDVKQALFAQLEAIVSPDCIL 118 (507)
T ss_pred -Hh--CCCCEEEEc-CcccHHHHHHHHHHHHhhCCCCcEE
Confidence 11 256888765 3333444566677777777777654
No 434
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=62.93 E-value=44 Score=28.59 Aligned_cols=79 Identities=19% Similarity=0.143 Sum_probs=47.6
Q ss_pred ccCCCeEEEECCCcCHHHHHH----HHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC-----
Q 023543 120 LLHGKKIVELGSGCGLVGCIA----ALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ----- 189 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~----a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~----- 189 (281)
.++++++|=.|++.| +|..+ ++.|++|++++. ++.++.+...++..+ .++.+...|..+....
T Consensus 8 ~~~~k~ilItGas~~-IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~~~~ 80 (256)
T PRK06124 8 SLAGQVALVTGSARG-LGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG------GAAEALAFDIADEEAVAAAFA 80 (256)
T ss_pred CCCCCEEEEECCCch-HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC------CceEEEEccCCCHHHHHHHHH
Confidence 367999999997655 45443 346899999998 555555544444432 2466677666543211
Q ss_pred -Cc-CCCCCcEEEEcccc
Q 023543 190 -DL-IQPLPDYVLGSDVI 205 (281)
Q Consensus 190 -~~-~~~~fD~Iia~d~i 205 (281)
.. .-+++|.++.+-..
T Consensus 81 ~~~~~~~~id~vi~~ag~ 98 (256)
T PRK06124 81 RIDAEHGRLDILVNNVGA 98 (256)
T ss_pred HHHHhcCCCCEEEECCCC
Confidence 00 11467888875443
No 435
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=62.85 E-value=13 Score=29.35 Aligned_cols=97 Identities=20% Similarity=0.124 Sum_probs=51.4
Q ss_pred EEECCCc-C-HHHHHHHHcCCEEEEEechhHHHHHHHHHHHhhcCCCCCC-ceEEEEE-ecCCCCCCCcCCCCCcEEEEc
Q 023543 127 VELGSGC-G-LVGCIAALLGAQVILTDLPDRLRLLKKNIENNLRHGDLRG-SAVVTEL-TWGDDPDQDLIQPLPDYVLGS 202 (281)
Q Consensus 127 LELGcGt-G-~~~i~~a~~g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~~-~i~~~~l-~w~~~~~~~~~~~~fD~Iia~ 202 (281)
+=+|+|. | +++-.+++.|.+|++++-+.-++. +..+++...... +..+..- .+... .....+||+|+.+
T Consensus 2 ~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~D~viv~ 74 (151)
T PF02558_consen 2 LIIGAGAIGSLYAARLAQAGHDVTLVSRSPRLEA----IKEQGLTITGPDGDETVQPPIVISAP---SADAGPYDLVIVA 74 (151)
T ss_dssp EEESTSHHHHHHHHHHHHTTCEEEEEESHHHHHH----HHHHCEEEEETTEEEEEEEEEEESSH---GHHHSTESEEEE-
T ss_pred EEECcCHHHHHHHHHHHHCCCceEEEEccccHHh----hhheeEEEEecccceecccccccCcc---hhccCCCcEEEEE
Confidence 3456663 2 233344456889999999444333 333433211111 1111111 11000 1134679999976
Q ss_pred cccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 203 DVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 203 d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
- .....+..++.++..+++++.+++...
T Consensus 75 v---Ka~~~~~~l~~l~~~~~~~t~iv~~qN 102 (151)
T PF02558_consen 75 V---KAYQLEQALQSLKPYLDPNTTIVSLQN 102 (151)
T ss_dssp S---SGGGHHHHHHHHCTGEETTEEEEEESS
T ss_pred e---cccchHHHHHHHhhccCCCcEEEEEeC
Confidence 2 234568888899999999977766544
No 436
>PLN02702 L-idonate 5-dehydrogenase
Probab=62.82 E-value=16 Score=33.39 Aligned_cols=98 Identities=19% Similarity=0.239 Sum_probs=50.4
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEE--EEEecCCCCCCC--cC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVV--TELTWGDDPDQD--LI 192 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~--~~l~w~~~~~~~--~~ 192 (281)
.++.+||=+|+|. |..++.+|+ .|++ |+++|. ++..+.++. .+.. ..+.+ ...+|....... ..
T Consensus 180 ~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~----~~~~~~~~~~~~~~~~~~~~~~~ 251 (364)
T PLN02702 180 GPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQ----LGAD----EIVLVSTNIEDVESEVEEIQKAM 251 (364)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC----EEEecCcccccHHHHHHHHhhhc
Confidence 4678888888652 444444554 6775 888888 555554442 2221 00000 001111100000 12
Q ss_pred CCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 193 QPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 193 ~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
..++|+|+-+--- ...+....++++++|+++...
T Consensus 252 ~~~~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 252 GGGIDVSFDCVGF------NKTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred CCCCCEEEECCCC------HHHHHHHHHHHhcCCEEEEEc
Confidence 3468888764211 235666777888888876544
No 437
>PRK09291 short chain dehydrogenase; Provisional
Probab=62.77 E-value=29 Score=29.62 Aligned_cols=75 Identities=21% Similarity=0.138 Sum_probs=43.0
Q ss_pred CCeEEEECCCcCHHHHHHH----HcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC-cCCCCC
Q 023543 123 GKKIVELGSGCGLVGCIAA----LLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD-LIQPLP 196 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a----~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~-~~~~~f 196 (281)
+++||=.|++. .+|..++ ..|++|++++. +...+.++......+ ..+.+...|+.+..... ....+.
T Consensus 2 ~~~vlVtGasg-~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~i 74 (257)
T PRK09291 2 SKTILITGAGS-GFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRG------LALRVEKLDLTDAIDRAQAAEWDV 74 (257)
T ss_pred CCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcceEEEeeCCCHHHHHHHhcCCC
Confidence 46788889754 4455443 46889999888 444444333333222 24667777776532210 112368
Q ss_pred cEEEEccc
Q 023543 197 DYVLGSDV 204 (281)
Q Consensus 197 D~Iia~d~ 204 (281)
|+|+.+.-
T Consensus 75 d~vi~~ag 82 (257)
T PRK09291 75 DVLLNNAG 82 (257)
T ss_pred CEEEECCC
Confidence 98887644
No 438
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=62.74 E-value=70 Score=32.22 Aligned_cols=40 Identities=15% Similarity=0.271 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhCCCcEEEEEEeeeChhHHHHHHHHH-hcCCeEEEEe
Q 023543 212 GDLLDTLLQLCGTQTTIFLAGELRNDSVLEYFLEAA-MKDFVIGRVE 257 (281)
Q Consensus 212 ~~ll~~l~~ll~~~g~~~l~~~~r~~~~~~~fl~~~-~~~f~v~~i~ 257 (281)
+.+++.+.++++++|++. ++. ....++ ..+ ..||.+++.+
T Consensus 186 ~~~~~~l~~~~~~~~~~~-t~t--~a~~vr---~~l~~~GF~v~~~~ 226 (662)
T PRK01747 186 PNLFNALARLARPGATLA-TFT--SAGFVR---RGLQEAGFTVRKVK 226 (662)
T ss_pred HHHHHHHHHHhCCCCEEE-Eee--hHHHHH---HHHHHcCCeeeecC
Confidence 789999999999998864 332 122222 223 3599988763
No 439
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=62.54 E-value=31 Score=31.07 Aligned_cols=87 Identities=17% Similarity=0.135 Sum_probs=47.3
Q ss_pred ccCCCeEEEECCCc-CHHHHH-HHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 120 LLHGKKIVELGSGC-GLVGCI-AALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G~~~i~-~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
...+++|+=||+|. |...+. +..+|++|+.+|. ++..+.++ ..+.. +. .+.+. .. .-..+
T Consensus 149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~----~~G~~--------~~--~~~~l-~~--~l~~a 211 (296)
T PRK08306 149 TIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARIT----EMGLS--------PF--HLSEL-AE--EVGKI 211 (296)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH----HcCCe--------ee--cHHHH-HH--HhCCC
Confidence 45789999999874 332222 2347899999999 55433332 22211 11 11110 01 11468
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEE
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIF 229 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~ 229 (281)
|+|+.+-.. ..+-+...+.+++++.++
T Consensus 212 DiVI~t~p~------~~i~~~~l~~~~~g~vII 238 (296)
T PRK08306 212 DIIFNTIPA------LVLTKEVLSKMPPEALII 238 (296)
T ss_pred CEEEECCCh------hhhhHHHHHcCCCCcEEE
Confidence 999986321 223344556678887766
No 440
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=62.53 E-value=24 Score=36.01 Aligned_cols=96 Identities=22% Similarity=0.250 Sum_probs=56.5
Q ss_pred CeEEEECCCc-C-HHHHHHH-HcCCEEEEEec-hhHHHHHHHHHHHhhcC----CCC--------CCceEEEEEecCCCC
Q 023543 124 KKIVELGSGC-G-LVGCIAA-LLGAQVILTDL-PDRLRLLKKNIENNLRH----GDL--------RGSAVVTELTWGDDP 187 (281)
Q Consensus 124 ~~VLELGcGt-G-~~~i~~a-~~g~~V~~tD~-~~~l~~~~~N~~~n~~~----~~~--------~~~i~~~~l~w~~~~ 187 (281)
++|-=||+|+ | -++..+| ..|.+|+..|. ++.++.+..++..+-.. ... ..++.+. ...
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-----~~~ 379 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGT-----TDY 379 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEe-----CCh
Confidence 4788999997 4 2344455 47999999999 77777776655433110 000 0122221 111
Q ss_pred CCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEE
Q 023543 188 DQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTI 228 (281)
Q Consensus 188 ~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~ 228 (281)
+ .+ ...|+|+-+ +.-+.+.-..+++.+..++++++++
T Consensus 380 ~-~~--~~adlViEa-v~E~l~~K~~v~~~l~~~~~~~~il 416 (699)
T TIGR02440 380 R-GF--KDVDIVIEA-VFEDLALKHQMVKDIEQECAAHTIF 416 (699)
T ss_pred H-Hh--ccCCEEEEe-ccccHHHHHHHHHHHHhhCCCCcEE
Confidence 1 11 356777765 3334455678888888888887654
No 441
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=62.48 E-value=15 Score=33.64 Aligned_cols=41 Identities=32% Similarity=0.525 Sum_probs=30.3
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHHH
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLKK 161 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~~ 161 (281)
.+|.+|-=+|+|. |+..+.-|+ .|+ +++++|+ ++-.+.+++
T Consensus 191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh
Confidence 5788999999886 655555555 566 6999999 777777764
No 442
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=62.22 E-value=1.2e+02 Score=27.14 Aligned_cols=109 Identities=19% Similarity=0.172 Sum_probs=60.4
Q ss_pred cCCCeEEEECCCcCHHHH----HHHHcCC--EEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEE--ecCCCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGC----IAALLGA--QVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTEL--TWGDDPDQDL 191 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i----~~a~~g~--~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l--~w~~~~~~~~ 191 (281)
..+.+.+|||+|+..=.- +++..|. +++.+|+ ...++...+.+...-. .+.+..+ ++..... .+
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~------~l~v~~l~~~~~~~La-~~ 149 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP------GLEVNALCGDYELALA-EL 149 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC------CCeEeehhhhHHHHHh-cc
Confidence 457899999999874332 2333443 6999999 5555543333333211 2222222 2211111 11
Q ss_pred CCCCCcEEEE-cccc--CCCCcHHHHHHHHHHhhCCCcEEEEEEeeeC
Q 023543 192 IQPLPDYVLG-SDVI--YSEGAVGDLLDTLLQLCGTQTTIFLAGELRN 236 (281)
Q Consensus 192 ~~~~fD~Iia-~d~i--y~~~~~~~ll~~l~~ll~~~g~~~l~~~~r~ 236 (281)
++.+=.+++- ...+ +.+..-..++..++..++||-.+++..-.+.
T Consensus 150 ~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k 197 (321)
T COG4301 150 PRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRK 197 (321)
T ss_pred cCCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccC
Confidence 2222222221 2222 3367778899999999999999998876654
No 443
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=62.09 E-value=53 Score=27.24 Aligned_cols=40 Identities=38% Similarity=0.464 Sum_probs=25.6
Q ss_pred ccCCCeEEEECCCcCHHH----HHHHHcCCEEEEEec-hhHHHHHH
Q 023543 120 LLHGKKIVELGSGCGLVG----CIAALLGAQVILTDL-PDRLRLLK 160 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~----i~~a~~g~~V~~tD~-~~~l~~~~ 160 (281)
.+++++++=+|+ +|-+| ..++..|++|+.++. .+.++.+.
T Consensus 25 ~l~~~~vlVlGg-tG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~ 69 (194)
T cd01078 25 DLKGKTAVVLGG-TGPVGQRAAVLLAREGARVVLVGRDLERAQKAA 69 (194)
T ss_pred CCCCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 467899999995 23333 344456889999887 44444333
No 444
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=61.81 E-value=26 Score=32.10 Aligned_cols=98 Identities=19% Similarity=0.198 Sum_probs=49.7
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++.+||=.|+|. |...+.+++ .|.+ |++++. ++..+.++. .+.. ..+.....++...........++
T Consensus 181 ~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~----~g~~----~vv~~~~~~~~~~l~~~~~~~~v 252 (363)
T cd08279 181 RPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR----FGAT----HTVNASEDDAVEAVRDLTDGRGA 252 (363)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----hCCe----EEeCCCCccHHHHHHHHcCCCCC
Confidence 4678888888752 444444444 6776 889887 554444431 1211 00000000111000011123568
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
|+++.+--- ...+....+.++++|+++...
T Consensus 253 d~vld~~~~------~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 253 DYAFEAVGR------AATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred CEEEEcCCC------hHHHHHHHHHhhcCCeEEEEe
Confidence 988753221 245667777788888876543
No 445
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=61.50 E-value=28 Score=31.36 Aligned_cols=93 Identities=22% Similarity=0.278 Sum_probs=50.5
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCC----CCcC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPD----QDLI 192 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~----~~~~ 192 (281)
.++.+||-.|+|. |...+.+|+ +|.+ |++++. ++..+.++. .+.. ..+++.+... ....
T Consensus 158 ~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~----~g~~---------~~~~~~~~~~~~~~~~~~ 224 (343)
T cd08236 158 TLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE----LGAD---------DTINPKEEDVEKVRELTE 224 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC---------EEecCccccHHHHHHHhC
Confidence 4677899998653 444444444 6886 988887 555554432 1211 1111111110 0112
Q ss_pred CCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 193 QPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 193 ~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
...+|+++.+ +.. ...+..+.++++++|.++...
T Consensus 225 ~~~~d~vld~--~g~----~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 225 GRGADLVIEA--AGS----PATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CCCCCEEEEC--CCC----HHHHHHHHHHhhcCCEEEEEc
Confidence 2458988865 211 345666778888888876554
No 446
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=61.41 E-value=32 Score=31.61 Aligned_cols=97 Identities=20% Similarity=0.201 Sum_probs=49.7
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEE--ecCCCCCCCcCCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTEL--TWGDDPDQDLIQP 194 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l--~w~~~~~~~~~~~ 194 (281)
.++.+||=.|+|. |...+.+|+ .|++ |++++. ++..+.+++ . +.. ..+..... ++..... .+...
T Consensus 182 ~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~-~---g~~----~~v~~~~~~~~~~~~l~-~~~~~ 252 (365)
T cd05279 182 TPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ-L---GAT----ECINPRDQDKPIVEVLT-EMTDG 252 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-h---CCC----eecccccccchHHHHHH-HHhCC
Confidence 4678888887753 444444444 6775 889986 555655532 1 211 00111111 1000000 11234
Q ss_pred CCcEEEEccccCCCCcHHHHHHHHHHhhC-CCcEEEEEE
Q 023543 195 LPDYVLGSDVIYSEGAVGDLLDTLLQLCG-TQTTIFLAG 232 (281)
Q Consensus 195 ~fD~Iia~d~iy~~~~~~~ll~~l~~ll~-~~g~~~l~~ 232 (281)
.+|+|+.+-- . ...+....+.++ ++|+++...
T Consensus 253 ~~d~vid~~g--~----~~~~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 253 GVDYAFEVIG--S----ADTLKQALDATRLGGGTSVVVG 285 (365)
T ss_pred CCcEEEECCC--C----HHHHHHHHHHhccCCCEEEEEe
Confidence 6898885421 1 345556667777 888877654
No 447
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=61.33 E-value=22 Score=34.69 Aligned_cols=101 Identities=24% Similarity=0.294 Sum_probs=55.3
Q ss_pred CCeEEEECCCc-C-HHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceE-------EEEEecCCCCCCCcC
Q 023543 123 GKKIVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAV-------VTELTWGDDPDQDLI 192 (281)
Q Consensus 123 ~~~VLELGcGt-G-~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~-------~~~l~w~~~~~~~~~ 192 (281)
=++|-=||+|+ | -++..+++.|.+|+..|. ++.++.++.+++.+.......+... ...+.+..... .+
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~-~l- 82 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLH-AL- 82 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHH-Hh-
Confidence 34677889886 4 456667778999999999 7788776665544321100001000 00011111111 11
Q ss_pred CCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcE
Q 023543 193 QPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTT 227 (281)
Q Consensus 193 ~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~ 227 (281)
...|+||-+ +.-+...-..++..+..+++++.+
T Consensus 83 -~~aDlVIEa-v~E~~~vK~~vf~~l~~~~~~~~I 115 (503)
T TIGR02279 83 -ADAGLVIEA-IVENLEVKKALFAQLEELCPADTI 115 (503)
T ss_pred -CCCCEEEEc-CcCcHHHHHHHHHHHHhhCCCCeE
Confidence 256888765 322334456677777777777654
No 448
>PRK08862 short chain dehydrogenase; Provisional
Probab=60.98 E-value=44 Score=28.52 Aligned_cols=46 Identities=26% Similarity=0.330 Sum_probs=32.9
Q ss_pred cCCCeEEEECCCcCH---HHHHHHHcCCEEEEEec-hhHHHHHHHHHHHh
Q 023543 121 LHGKKIVELGSGCGL---VGCIAALLGAQVILTDL-PDRLRLLKKNIENN 166 (281)
Q Consensus 121 ~~~~~VLELGcGtG~---~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n 166 (281)
++++++|=.|++.|+ ++..+++.|++|++++. ++.++.+.+.+...
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~ 52 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSAL 52 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc
Confidence 568899999999885 34445568999999988 66665555445443
No 449
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=60.97 E-value=29 Score=30.26 Aligned_cols=41 Identities=29% Similarity=0.331 Sum_probs=26.9
Q ss_pred ccCCCeEEEECC-C-cCHHHHHHHH-cCCEEEEEec-hhHHHHHH
Q 023543 120 LLHGKKIVELGS-G-CGLVGCIAAL-LGAQVILTDL-PDRLRLLK 160 (281)
Q Consensus 120 ~~~~~~VLELGc-G-tG~~~i~~a~-~g~~V~~tD~-~~~l~~~~ 160 (281)
..++.+||=.|+ | .|...+.+++ .|++|++++. ++..+.++
T Consensus 134 ~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 178 (320)
T cd05286 134 VKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELAR 178 (320)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence 346889999995 2 3444444444 7889999887 55555543
No 450
>PRK12939 short chain dehydrogenase; Provisional
Probab=60.79 E-value=94 Score=26.19 Aligned_cols=77 Identities=22% Similarity=0.163 Sum_probs=44.2
Q ss_pred cCCCeEEEECCCcCHHHHHHH----HcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC--Cc--
Q 023543 121 LHGKKIVELGSGCGLVGCIAA----LLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ--DL-- 191 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a----~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~--~~-- 191 (281)
.+++++|=.|++ |.+|..++ +.|++|++++. ++.+..+...++..+ .++.+...|..+.... .+
T Consensus 5 ~~~~~vlItGa~-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~~~~~ 77 (250)
T PRK12939 5 LAGKRALVTGAA-RGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG------GRAHAIAADLADPASVQRFFDA 77 (250)
T ss_pred CCCCEEEEeCCC-ChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEccCCCHHHHHHHHHH
Confidence 568899988864 55565554 46889999988 554544443333211 2466666665432210 00
Q ss_pred ---CCCCCcEEEEccc
Q 023543 192 ---IQPLPDYVLGSDV 204 (281)
Q Consensus 192 ---~~~~fD~Iia~d~ 204 (281)
...++|+|+.+.-
T Consensus 78 ~~~~~~~id~vi~~ag 93 (250)
T PRK12939 78 AAAALGGLDGLVNNAG 93 (250)
T ss_pred HHHHcCCCCEEEECCC
Confidence 0146898887544
No 451
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=60.56 E-value=32 Score=29.29 Aligned_cols=76 Identities=20% Similarity=0.170 Sum_probs=42.7
Q ss_pred CCeEEEECCCcCHHHHHHH----HcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC-----Cc-
Q 023543 123 GKKIVELGSGCGLVGCIAA----LLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ-----DL- 191 (281)
Q Consensus 123 ~~~VLELGcGtG~~~i~~a----~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~-----~~- 191 (281)
+++||=.|+ +|.+|..++ ..|.+|++++. ++..+.+...+...+ .++.+...|+.+..+. ..
T Consensus 1 ~~~vlItGa-~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~ 73 (255)
T TIGR01963 1 GKTALVTGA-ASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAG------GSVIYLVADVTKEDEIADMIAAAA 73 (255)
T ss_pred CCEEEEcCC-cchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CceEEEECCCCCHHHHHHHHHHHH
Confidence 356777885 455565544 35889999998 554444443333221 2466667676543210 00
Q ss_pred -CCCCCcEEEEcccc
Q 023543 192 -IQPLPDYVLGSDVI 205 (281)
Q Consensus 192 -~~~~fD~Iia~d~i 205 (281)
...+.|+|+.+...
T Consensus 74 ~~~~~~d~vi~~a~~ 88 (255)
T TIGR01963 74 AEFGGLDILVNNAGI 88 (255)
T ss_pred HhcCCCCEEEECCCC
Confidence 12457888875543
No 452
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=60.55 E-value=28 Score=31.01 Aligned_cols=77 Identities=13% Similarity=0.083 Sum_probs=40.4
Q ss_pred CCCeEEEECCCcCHHHHHHHH----cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 122 HGKKIVELGSGCGLVGCIAAL----LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 122 ~~~~VLELGcGtG~~~i~~a~----~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
++++||=.|+ +|.+|-.+++ .|.+|++++. +.............+. ..++.+...|..+.......-..+
T Consensus 3 ~~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (322)
T PLN02662 3 EGKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGA----KERLHLFKANLLEEGSFDSVVDGC 77 (322)
T ss_pred CCCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCC----CCceEEEeccccCcchHHHHHcCC
Confidence 4678998884 7888876664 5888988877 3322212111111111 135666666654432211111357
Q ss_pred cEEEEcc
Q 023543 197 DYVLGSD 203 (281)
Q Consensus 197 D~Iia~d 203 (281)
|+|+-+.
T Consensus 78 d~Vih~A 84 (322)
T PLN02662 78 EGVFHTA 84 (322)
T ss_pred CEEEEeC
Confidence 8877644
No 453
>PRK07062 short chain dehydrogenase; Provisional
Probab=60.37 E-value=59 Score=27.99 Aligned_cols=81 Identities=16% Similarity=0.169 Sum_probs=47.0
Q ss_pred cCCCeEEEECCCcCH---HHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC-----Cc
Q 023543 121 LHGKKIVELGSGCGL---VGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ-----DL 191 (281)
Q Consensus 121 ~~~~~VLELGcGtG~---~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~-----~~ 191 (281)
.+++++|=.|++.|+ ++..++..|++|++++. ++.++.+...+..... ..++.+...|..+.... ..
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~ 81 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFP----GARLLAARCDVLDEADVAAFAAAV 81 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCC----CceEEEEEecCCCHHHHHHHHHHH
Confidence 578999999987663 22334457899999998 5555554444433211 12455666665543211 00
Q ss_pred --CCCCCcEEEEcccc
Q 023543 192 --IQPLPDYVLGSDVI 205 (281)
Q Consensus 192 --~~~~fD~Iia~d~i 205 (281)
.-.++|+++.+--+
T Consensus 82 ~~~~g~id~li~~Ag~ 97 (265)
T PRK07062 82 EARFGGVDMLVNNAGQ 97 (265)
T ss_pred HHhcCCCCEEEECCCC
Confidence 12468998876544
No 454
>PRK09242 tropinone reductase; Provisional
Probab=60.31 E-value=56 Score=27.98 Aligned_cols=81 Identities=17% Similarity=0.164 Sum_probs=46.9
Q ss_pred ccCCCeEEEECCCcCHHHHH----HHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC-----
Q 023543 120 LLHGKKIVELGSGCGLVGCI----AALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ----- 189 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~----~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~----- 189 (281)
.++++++|=.|++.|+ |.. ++..|++|++++. .+.++.+..++..... ..++.+...|..+....
T Consensus 6 ~~~~k~~lItGa~~gI-G~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~----~~~~~~~~~Dl~~~~~~~~~~~ 80 (257)
T PRK09242 6 RLDGQTALITGASKGI-GLAIAREFLGLGADVLIVARDADALAQARDELAEEFP----EREVHGLAADVSDDEDRRAILD 80 (257)
T ss_pred ccCCCEEEEeCCCchH-HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCC----CCeEEEEECCCCCHHHHHHHHH
Confidence 3578999999986553 433 3446899999998 5556555555544311 12455556555432110
Q ss_pred Cc--CCCCCcEEEEcccc
Q 023543 190 DL--IQPLPDYVLGSDVI 205 (281)
Q Consensus 190 ~~--~~~~fD~Iia~d~i 205 (281)
.. .-+++|+|+.+--.
T Consensus 81 ~~~~~~g~id~li~~ag~ 98 (257)
T PRK09242 81 WVEDHWDGLHILVNNAGG 98 (257)
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 00 12468988875543
No 455
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=60.28 E-value=32 Score=32.37 Aligned_cols=54 Identities=22% Similarity=0.303 Sum_probs=36.4
Q ss_pred eecchHHHHHHHHhhhhccCccccCCCeEEEECCCcCHHHHHHHHcC-CEEEEEec-hhHHHHHH
Q 023543 98 VMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGCIAALLG-AQVILTDL-PDRLRLLK 160 (281)
Q Consensus 98 ~~W~~s~~la~~l~~~~~~~~~~~~~~~VLELGcGtG~~~i~~a~~g-~~V~~tD~-~~~l~~~~ 160 (281)
.+|+...+..+-|. +.++.+||=|.+| |...+.+...+ ++|+++|+ +.-+.+++
T Consensus 19 ~~WEDp~vD~~aL~--------i~~~d~vl~ItSa-G~N~L~yL~~~P~~I~aVDlNp~Q~aLle 74 (380)
T PF11899_consen 19 QCWEDPRVDMEALN--------IGPDDRVLTITSA-GCNALDYLLAGPKRIHAVDLNPAQNALLE 74 (380)
T ss_pred cccCCcHHHHHHhC--------CCCCCeEEEEccC-CchHHHHHhcCCceEEEEeCCHHHHHHHH
Confidence 35999888887775 3578899999765 43344444444 57999999 54344444
No 456
>PRK05854 short chain dehydrogenase; Provisional
Probab=60.15 E-value=65 Score=28.90 Aligned_cols=81 Identities=21% Similarity=0.176 Sum_probs=48.2
Q ss_pred ccCCCeEEEECCCcCHHHHH----HHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC-----
Q 023543 120 LLHGKKIVELGSGCGLVGCI----AALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ----- 189 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~----~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~----- 189 (281)
..+++++|=.|++.|+ |.. +++.|++|++++. .+..+.+...+..... ..++.+..+|..+....
T Consensus 11 ~l~gk~~lITGas~GI-G~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~----~~~v~~~~~Dl~d~~sv~~~~~ 85 (313)
T PRK05854 11 DLSGKRAVVTGASDGL-GLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVP----DAKLSLRALDLSSLASVAALGE 85 (313)
T ss_pred ccCCCEEEEeCCCChH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC----CCceEEEEecCCCHHHHHHHHH
Confidence 3678999999987764 443 4457899999988 5545544444433211 12566777776542211
Q ss_pred Cc--CCCCCcEEEEcccc
Q 023543 190 DL--IQPLPDYVLGSDVI 205 (281)
Q Consensus 190 ~~--~~~~fD~Iia~d~i 205 (281)
.+ ..++.|++|.+--+
T Consensus 86 ~~~~~~~~iD~li~nAG~ 103 (313)
T PRK05854 86 QLRAEGRPIHLLINNAGV 103 (313)
T ss_pred HHHHhCCCccEEEECCcc
Confidence 00 12568998875443
No 457
>PRK06125 short chain dehydrogenase; Provisional
Probab=60.15 E-value=58 Score=27.95 Aligned_cols=79 Identities=19% Similarity=0.209 Sum_probs=46.3
Q ss_pred cCCCeEEEECCCcCHHHHH----HHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC--Cc-C
Q 023543 121 LHGKKIVELGSGCGLVGCI----AALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ--DL-I 192 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~----~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~--~~-~ 192 (281)
++++++|=.|++.| +|.. ++..|++|++++. ++.++.+...+..... .++.+...|..+.... .+ .
T Consensus 5 ~~~k~vlItG~~~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~~D~~~~~~~~~~~~~ 78 (259)
T PRK06125 5 LAGKRVLITGASKG-IGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHG-----VDVAVHALDLSSPEAREQLAAE 78 (259)
T ss_pred CCCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcC-----CceEEEEecCCCHHHHHHHHHH
Confidence 56889999998665 3443 4457899999998 5555554444433211 2455666665432210 00 1
Q ss_pred CCCCcEEEEcccc
Q 023543 193 QPLPDYVLGSDVI 205 (281)
Q Consensus 193 ~~~fD~Iia~d~i 205 (281)
-++.|+++.+..+
T Consensus 79 ~g~id~lv~~ag~ 91 (259)
T PRK06125 79 AGDIDILVNNAGA 91 (259)
T ss_pred hCCCCEEEECCCC
Confidence 1467888876543
No 458
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=60.03 E-value=46 Score=28.63 Aligned_cols=32 Identities=25% Similarity=0.362 Sum_probs=23.1
Q ss_pred cCCCeEEEECCCc-C-HHHHHHHHcCC-EEEEEec
Q 023543 121 LHGKKIVELGSGC-G-LVGCIAALLGA-QVILTDL 152 (281)
Q Consensus 121 ~~~~~VLELGcGt-G-~~~i~~a~~g~-~V~~tD~ 152 (281)
+.+++|+=+|||. | .++..+++.|. +++.+|.
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~ 53 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDD 53 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 5788999999994 4 44556666776 5777765
No 459
>PRK05876 short chain dehydrogenase; Provisional
Probab=59.81 E-value=45 Score=29.25 Aligned_cols=78 Identities=22% Similarity=0.210 Sum_probs=45.0
Q ss_pred cCCCeEEEECCCcCHHHHH----HHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC-c---
Q 023543 121 LHGKKIVELGSGCGLVGCI----AALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD-L--- 191 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~----~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~-~--- 191 (281)
++++++|=.|++.|+ |.. ++..|++|+++|. .+.++.+...+...+ .++.+...|..+..+.. +
T Consensus 4 ~~~k~vlVTGas~gI-G~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~------~~~~~~~~Dv~d~~~v~~~~~~ 76 (275)
T PRK05876 4 FPGRGAVITGGASGI-GLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEG------FDVHGVMCDVRHREEVTHLADE 76 (275)
T ss_pred cCCCEEEEeCCCchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEeCCCCCHHHHHHHHHH
Confidence 578899999987663 443 4457899999998 544544433333222 23555666654322100 0
Q ss_pred ---CCCCCcEEEEcccc
Q 023543 192 ---IQPLPDYVLGSDVI 205 (281)
Q Consensus 192 ---~~~~fD~Iia~d~i 205 (281)
.-++.|+++.+.-+
T Consensus 77 ~~~~~g~id~li~nAg~ 93 (275)
T PRK05876 77 AFRLLGHVDVVFSNAGI 93 (275)
T ss_pred HHHHcCCCCEEEECCCc
Confidence 11467988875543
No 460
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=59.54 E-value=27 Score=28.79 Aligned_cols=33 Identities=27% Similarity=0.325 Sum_probs=26.1
Q ss_pred ccCCCeEEEECCC-c-CH-HHHHHHHcCCEEEEEec
Q 023543 120 LLHGKKIVELGSG-C-GL-VGCIAALLGAQVILTDL 152 (281)
Q Consensus 120 ~~~~~~VLELGcG-t-G~-~~i~~a~~g~~V~~tD~ 152 (281)
.+.+++||=+|+| + |. ++-.+...|++|+.++.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r 76 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHS 76 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEEC
Confidence 4789999999999 3 65 55566667889988887
No 461
>PRK06128 oxidoreductase; Provisional
Probab=59.21 E-value=96 Score=27.47 Aligned_cols=31 Identities=35% Similarity=0.527 Sum_probs=22.4
Q ss_pred cCCCeEEEECCCcCHHHHH----HHHcCCEEEEEec
Q 023543 121 LHGKKIVELGSGCGLVGCI----AALLGAQVILTDL 152 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~----~a~~g~~V~~tD~ 152 (281)
.++++||=.|++.| +|.. ++..|++|++++.
T Consensus 53 l~~k~vlITGas~g-IG~~~a~~l~~~G~~V~i~~~ 87 (300)
T PRK06128 53 LQGRKALITGADSG-IGRATAIAFAREGADIALNYL 87 (300)
T ss_pred cCCCEEEEecCCCc-HHHHHHHHHHHcCCEEEEEeC
Confidence 57899999997555 4444 3446899988876
No 462
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=59.10 E-value=26 Score=32.01 Aligned_cols=98 Identities=20% Similarity=0.151 Sum_probs=51.2
Q ss_pred cCCCeEEEECCCc--CHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGC--GLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGt--G~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
..|.+||=.|+.. |.+++-+|+ +|+.++++-. ++-.+.++ ..+.+ .-+.+..-+|.+..........+
T Consensus 141 ~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~----~lGAd----~vi~y~~~~~~~~v~~~t~g~gv 212 (326)
T COG0604 141 KPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLK----ELGAD----HVINYREEDFVEQVRELTGGKGV 212 (326)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHH----hcCCC----EEEcCCcccHHHHHHHHcCCCCc
Confidence 3589999999554 455665665 6767666655 54433333 22222 11222222233222111122468
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEEe
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAGE 233 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~~ 233 (281)
|+|+-+-- ...+....+.|+++|+++....
T Consensus 213 Dvv~D~vG-------~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 213 DVVLDTVG-------GDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred eEEEECCC-------HHHHHHHHHHhccCCEEEEEec
Confidence 98775433 3444546666777787665543
No 463
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=58.90 E-value=88 Score=27.74 Aligned_cols=97 Identities=23% Similarity=0.190 Sum_probs=50.4
Q ss_pred eEEEECCCc-C-HHHHHHHHcCCEEEEEechhHHHHHHHHHHHhhcCCCCC-CceEEEEEecCCCCCCCcCCCCCcEEEE
Q 023543 125 KIVELGSGC-G-LVGCIAALLGAQVILTDLPDRLRLLKKNIENNLRHGDLR-GSAVVTELTWGDDPDQDLIQPLPDYVLG 201 (281)
Q Consensus 125 ~VLELGcGt-G-~~~i~~a~~g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~-~~i~~~~l~w~~~~~~~~~~~~fD~Iia 201 (281)
+|+=+|+|. | .++..+++.|.+|++.+.++.++.++ .++...... ....+ ...-.. +..-...++|+|+.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~----~~g~~~~~~~~~~~~-~~~~~~--~~~~~~~~~d~vil 74 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVRPKRAKALR----ERGLVIRSDHGDAVV-PGPVIT--DPEELTGPFDLVIL 74 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEecHHHHHHHH----hCCeEEEeCCCeEEe-cceeec--CHHHccCCCCEEEE
Confidence 466788875 3 35555666788899998843344333 222221000 01110 000000 00011256898876
Q ss_pred ccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 202 SDVIYSEGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 202 ~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
+=-- ..++.+++.+...+.++..++..
T Consensus 75 avk~---~~~~~~~~~l~~~~~~~~~ii~~ 101 (305)
T PRK12921 75 AVKA---YQLDAAIPDLKPLVGEDTVIIPL 101 (305)
T ss_pred Eecc---cCHHHHHHHHHhhcCCCCEEEEe
Confidence 5432 34678888888888887765544
No 464
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=58.75 E-value=78 Score=28.80 Aligned_cols=31 Identities=19% Similarity=0.084 Sum_probs=24.2
Q ss_pred cCCCeEEEECCCcCHHHHHHHH----cCCEEEEEec
Q 023543 121 LHGKKIVELGSGCGLVGCIAAL----LGAQVILTDL 152 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~----~g~~V~~tD~ 152 (281)
..+++||=.| |+|.+|..+++ .|.+|++++.
T Consensus 8 ~~~~~vLVtG-~~GfIG~~l~~~L~~~G~~V~~~~r 42 (353)
T PLN02896 8 SATGTYCVTG-ATGYIGSWLVKLLLQRGYTVHATLR 42 (353)
T ss_pred cCCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 4678999999 47888876664 5889998877
No 465
>PRK06172 short chain dehydrogenase; Provisional
Probab=58.61 E-value=57 Score=27.80 Aligned_cols=78 Identities=22% Similarity=0.214 Sum_probs=46.6
Q ss_pred cCCCeEEEECCCcCHHHHH----HHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC--Cc--
Q 023543 121 LHGKKIVELGSGCGLVGCI----AALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ--DL-- 191 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~----~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~--~~-- 191 (281)
+++++||=.|++.| +|.. +++.|++|++++. ++.++.+...+...+ .++.+...|..+.... .+
T Consensus 5 l~~k~ilItGas~~-iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~i~~~~~~ 77 (253)
T PRK06172 5 FSGKVALVTGGAAG-IGRATALAFAREGAKVVVADRDAAGGEETVALIREAG------GEALFVACDVTRDAEVKALVEQ 77 (253)
T ss_pred CCCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC------CceEEEEcCCCCHHHHHHHHHH
Confidence 57899999997655 4443 3446889999998 555554444443322 3466666665442211 00
Q ss_pred ---CCCCCcEEEEcccc
Q 023543 192 ---IQPLPDYVLGSDVI 205 (281)
Q Consensus 192 ---~~~~fD~Iia~d~i 205 (281)
..+++|+|+.+...
T Consensus 78 ~~~~~g~id~li~~ag~ 94 (253)
T PRK06172 78 TIAAYGRLDYAFNNAGI 94 (253)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 11467999876543
No 466
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=58.41 E-value=34 Score=33.57 Aligned_cols=96 Identities=15% Similarity=0.109 Sum_probs=58.2
Q ss_pred eEEEECCCcCHHHHH---HHH---cCCEEEEEec-hhHHHHH-HHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 125 KIVELGSGCGLVGCI---AAL---LGAQVILTDL-PDRLRLL-KKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 125 ~VLELGcGtG~~~i~---~a~---~g~~V~~tD~-~~~l~~~-~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.|+=+|+|-|-+.-+ +|. +..++++++- |.++-.+ ..|.+... +++.+..-|-..... +..+.
T Consensus 370 VimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~------~~Vtii~~DMR~w~a---p~eq~ 440 (649)
T KOG0822|consen 370 VIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWD------NRVTIISSDMRKWNA---PREQA 440 (649)
T ss_pred EEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhc------CeeEEEeccccccCC---chhhc
Confidence 578899999966543 333 2235899999 7775433 34544432 456666644322221 13567
Q ss_pred cEEEEc--cccCCCCcHHHHHHHHHHhhCCCcEEE
Q 023543 197 DYVLGS--DVIYSEGAVGDLLDTLLQLCGTQTTIF 229 (281)
Q Consensus 197 D~Iia~--d~iy~~~~~~~ll~~l~~ll~~~g~~~ 229 (281)
|++++- ..+-+-+.-+..+.-+.++|||.|+.+
T Consensus 441 DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 441 DIIVSELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred cchHHHhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 977651 112224455788889999999998764
No 467
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=58.30 E-value=94 Score=27.93 Aligned_cols=40 Identities=28% Similarity=0.278 Sum_probs=23.8
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCCEEEEEec-hhHHHHHH
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLK 160 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~~V~~tD~-~~~l~~~~ 160 (281)
.++.+||=.|||. |...+.+++ .|.+|+.++. ++..+.++
T Consensus 168 ~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~ 210 (337)
T cd05283 168 GPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDAL 210 (337)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence 4566776677642 333333333 6889988888 55555553
No 468
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=57.80 E-value=13 Score=33.18 Aligned_cols=34 Identities=26% Similarity=0.382 Sum_probs=25.4
Q ss_pred ccCCCeEEEECCCc-C-HHHHHHHHcC-CEEEEEech
Q 023543 120 LLHGKKIVELGSGC-G-LVGCIAALLG-AQVILTDLP 153 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G-~~~i~~a~~g-~~V~~tD~~ 153 (281)
.+++.+|+=+|||. | .++..+++.| .+++.+|..
T Consensus 27 kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 27 LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 36788999999994 4 4555677778 478888873
No 469
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=57.78 E-value=1.6e+02 Score=27.94 Aligned_cols=35 Identities=26% Similarity=0.265 Sum_probs=23.9
Q ss_pred CeEEEECCCc-C-HHHHHHHHcCCEEEEEec-hhHHHH
Q 023543 124 KKIVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRL 158 (281)
Q Consensus 124 ~~VLELGcGt-G-~~~i~~a~~g~~V~~tD~-~~~l~~ 158 (281)
++|-=+|.|. | ..+..+++.|.+|++.|. ++.++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~ 41 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDT 41 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 4566677774 3 334455567899999999 666664
No 470
>PRK07035 short chain dehydrogenase; Provisional
Probab=57.18 E-value=59 Score=27.69 Aligned_cols=77 Identities=23% Similarity=0.271 Sum_probs=45.1
Q ss_pred cCCCeEEEECCCcCHHHH----HHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC--c--
Q 023543 121 LHGKKIVELGSGCGLVGC----IAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD--L-- 191 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i----~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~--~-- 191 (281)
+++++||=.|++.|+ |. .+++.|++|++++. .+.++.+.+.+...+ .++.+...|..+..... +
T Consensus 6 l~~k~vlItGas~gI-G~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~ 78 (252)
T PRK07035 6 LTGKIALVTGASRGI-GEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAG------GKAEALACHIGEMEQIDALFAH 78 (252)
T ss_pred cCCCEEEEECCCcHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEEcCCCCHHHHHHHHHH
Confidence 578899999987663 33 34456899999998 555554444443321 23455555654432110 0
Q ss_pred ---CCCCCcEEEEccc
Q 023543 192 ---IQPLPDYVLGSDV 204 (281)
Q Consensus 192 ---~~~~fD~Iia~d~ 204 (281)
.-+++|+++.+..
T Consensus 79 ~~~~~~~id~li~~ag 94 (252)
T PRK07035 79 IRERHGRLDILVNNAA 94 (252)
T ss_pred HHHHcCCCCEEEECCC
Confidence 0146899886544
No 471
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=56.53 E-value=38 Score=30.54 Aligned_cols=96 Identities=18% Similarity=0.153 Sum_probs=49.3
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEE-EecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTE-LTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~-l~w~~~~~~~~~~~~f 196 (281)
.++.+||=.|||. |...+.+|+ .|.+|++++- ++..+.+++ .+.. .-+.... .++...... +...++
T Consensus 164 ~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~----~g~~----~~i~~~~~~~~~~~~~~-~~~~~~ 234 (345)
T cd08260 164 KPGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARE----LGAV----ATVNASEVEDVAAAVRD-LTGGGA 234 (345)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH----hCCC----EEEccccchhHHHHHHH-HhCCCC
Confidence 4678999999652 333343443 6889999887 555555532 2221 0011111 010000000 111268
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
|+++.+ +-. ...+....++++++|.++..
T Consensus 235 d~vi~~--~g~----~~~~~~~~~~l~~~g~~i~~ 263 (345)
T cd08260 235 HVSVDA--LGI----PETCRNSVASLRKRGRHVQV 263 (345)
T ss_pred CEEEEc--CCC----HHHHHHHHHHhhcCCEEEEe
Confidence 988854 211 33556667788888887654
No 472
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=56.30 E-value=41 Score=30.21 Aligned_cols=97 Identities=19% Similarity=0.119 Sum_probs=50.3
Q ss_pred cCCCeEEEECCCc--CHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGC--GLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGt--G~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++.+||=.|+|. |...+.+|+ .|.+|+++.. ++..+.++. .+.. .-+.....+|.+..........+
T Consensus 164 ~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~----~v~~~~~~~~~~~~~~~~~~~~v 235 (341)
T cd08297 164 KPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAKE----LGAD----AFVDFKKSDDVEAVKELTGGGGA 235 (341)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH----cCCc----EEEcCCCccHHHHHHHHhcCCCC
Confidence 4678999888864 444444454 7889988887 444444421 1111 00001111111110111123568
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
|+++.+-.- ...+....+.++++|+++..
T Consensus 236 d~vl~~~~~------~~~~~~~~~~l~~~g~~v~~ 264 (341)
T cd08297 236 HAVVVTAVS------AAAYEQALDYLRPGGTLVCV 264 (341)
T ss_pred CEEEEcCCc------hHHHHHHHHHhhcCCEEEEe
Confidence 988742221 34566667778888887755
No 473
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=56.16 E-value=44 Score=29.17 Aligned_cols=41 Identities=34% Similarity=0.533 Sum_probs=26.7
Q ss_pred ccCCCeEEEECCC--cCHHHHHHHH-cCCEEEEEec-hhHHHHHH
Q 023543 120 LLHGKKIVELGSG--CGLVGCIAAL-LGAQVILTDL-PDRLRLLK 160 (281)
Q Consensus 120 ~~~~~~VLELGcG--tG~~~i~~a~-~g~~V~~tD~-~~~l~~~~ 160 (281)
..++.+||-.||. .|...+.+++ .|.+|+.++. ++..+.++
T Consensus 137 ~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 181 (323)
T cd08241 137 LQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALAR 181 (323)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHH
Confidence 3468899999982 2433333343 6889999988 55555553
No 474
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=56.01 E-value=65 Score=27.59 Aligned_cols=79 Identities=22% Similarity=0.159 Sum_probs=47.4
Q ss_pred ccCCCeEEEECCCcCHHHHHHHH----cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC-----
Q 023543 120 LLHGKKIVELGSGCGLVGCIAAL----LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ----- 189 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~~a~----~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~----- 189 (281)
.++++++|=.|+ +|.+|..+++ .|++|++++. .+.++.+...+...+ .++.+...|..+....
T Consensus 9 ~~~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~------~~~~~~~~Dl~d~~~i~~~~~ 81 (259)
T PRK08213 9 DLSGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG------IDALWIAADVADEADIERLAE 81 (259)
T ss_pred CcCCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEEccCCCHHHHHHHHH
Confidence 357899999995 5656666553 5889999998 555555554444332 2455666665442211
Q ss_pred -Cc-CCCCCcEEEEcccc
Q 023543 190 -DL-IQPLPDYVLGSDVI 205 (281)
Q Consensus 190 -~~-~~~~fD~Iia~d~i 205 (281)
.. ..+++|.|+.+...
T Consensus 82 ~~~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 82 ETLERFGHVDILVNNAGA 99 (259)
T ss_pred HHHHHhCCCCEEEECCCC
Confidence 00 01468998876543
No 475
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=55.80 E-value=1.1e+02 Score=25.19 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=20.7
Q ss_pred eEEEECCCc-C-HHHHHHHHcCC-EEEEEech
Q 023543 125 KIVELGSGC-G-LVGCIAALLGA-QVILTDLP 153 (281)
Q Consensus 125 ~VLELGcGt-G-~~~i~~a~~g~-~V~~tD~~ 153 (281)
+|+=+|||. | .++..+++.|. +++.+|..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 477889984 4 34556677777 59999983
No 476
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=55.18 E-value=99 Score=24.11 Aligned_cols=29 Identities=24% Similarity=0.413 Sum_probs=18.3
Q ss_pred eEEEECCCc-C-HHHHHHHHcCC-EEEEEech
Q 023543 125 KIVELGSGC-G-LVGCIAALLGA-QVILTDLP 153 (281)
Q Consensus 125 ~VLELGcGt-G-~~~i~~a~~g~-~V~~tD~~ 153 (281)
+|+=+|||. | .+...+++.|. +++.+|..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 467788873 4 23445556676 68888853
No 477
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=55.17 E-value=28 Score=31.03 Aligned_cols=96 Identities=19% Similarity=0.203 Sum_probs=53.7
Q ss_pred CeEEEECCCc-C-HHHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhh--cC-----CCC--------CCceEEEEEecCC
Q 023543 124 KKIVELGSGC-G-LVGCIAALLGAQVILTDL-PDRLRLLKKNIENNL--RH-----GDL--------RGSAVVTELTWGD 185 (281)
Q Consensus 124 ~~VLELGcGt-G-~~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~--~~-----~~~--------~~~i~~~~l~w~~ 185 (281)
++|.=+|||. | .++..++..|.+|++.|. ++.++.+++.+..+. +. ... ..++.+. .
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-----~ 78 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-----T 78 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-----C
Confidence 4677788885 4 455566678889999999 777876665444321 00 000 0011111 1
Q ss_pred CCCCCcCCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEE
Q 023543 186 DPDQDLIQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTI 228 (281)
Q Consensus 186 ~~~~~~~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~ 228 (281)
..+ . -...|+|+-+=. -.......+++.+...++++.++
T Consensus 79 ~~~-~--~~~aDlVieav~-e~~~~k~~~~~~l~~~~~~~~il 117 (291)
T PRK06035 79 SYE-S--LSDADFIVEAVP-EKLDLKRKVFAELERNVSPETII 117 (291)
T ss_pred CHH-H--hCCCCEEEEcCc-CcHHHHHHHHHHHHhhCCCCeEE
Confidence 111 1 134688876621 11223577888888888887654
No 478
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=54.91 E-value=53 Score=27.11 Aligned_cols=43 Identities=21% Similarity=0.369 Sum_probs=29.5
Q ss_pred CeEEEECCCcCHHHHHHHHc--CCEEEEEechhHHHHHHHHHHHh
Q 023543 124 KKIVELGSGCGLVGCIAALL--GAQVILTDLPDRLRLLKKNIENN 166 (281)
Q Consensus 124 ~~VLELGcGtG~~~i~~a~~--g~~V~~tD~~~~l~~~~~N~~~n 166 (281)
+.|+.||||.=.-+.-+... +.+++=+|.+++++.=++-+..+
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~ 124 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPES 124 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHT
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhC
Confidence 48999999987767766663 45789999999887766666655
No 479
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=54.89 E-value=53 Score=31.17 Aligned_cols=96 Identities=20% Similarity=0.180 Sum_probs=52.7
Q ss_pred CcCHHHHHHHHcCCE-----EEEEechhHHHHHHHHHHHhhcCCC---------------CCCceEEEEEecCCCCCCCc
Q 023543 132 GCGLVGCIAALLGAQ-----VILTDLPDRLRLLKKNIENNLRHGD---------------LRGSAVVTELTWGDDPDQDL 191 (281)
Q Consensus 132 GtG~~~i~~a~~g~~-----V~~tD~~~~l~~~~~N~~~n~~~~~---------------~~~~i~~~~l~w~~~~~~~~ 191 (281)
|.|.++.-++.+|++ |++.|- +-+.++.++..++.... ...+-+...+||++.+....
T Consensus 52 GAaNVa~NiasLGa~a~l~GvvG~De--ag~~L~~~l~~~~i~~~l~~~~~r~T~~K~Rv~s~nQQllRvD~Ee~~~~~~ 129 (467)
T COG2870 52 GAANVAKNIASLGANAYLVGVVGKDE--AGKALIELLKANGIDSDLLRDKNRPTIVKLRVLSRNQQLLRLDFEEKFPIED 129 (467)
T ss_pred cHHHHHHHHHHcCCCEEEEEeeccch--hHHHHHHHHHhcCcccceEeecCCCceeeeeeecccceEEEecccccCcchh
Confidence 677888888888885 455555 33334444455443311 12345677889987665321
Q ss_pred ----------CCCCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 192 ----------IQPLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 192 ----------~~~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
..+.||.+|.||- ....+.+ ++.+-.+.+..|..++++
T Consensus 130 ~~~ll~~~~~~l~~~~~vVLSDY--~KG~L~~-~q~~I~~ar~~~~pVLvD 177 (467)
T COG2870 130 ENKLLEKIKNALKSFDALVLSDY--AKGVLTN-VQKMIDLAREAGIPVLVD 177 (467)
T ss_pred HHHHHHHHHHHhhcCCEEEEecc--ccccchh-HHHHHHHHHHcCCcEEEC
Confidence 1267999999884 3322222 333344444444444444
No 480
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=54.77 E-value=93 Score=28.20 Aligned_cols=97 Identities=23% Similarity=0.205 Sum_probs=50.2
Q ss_pred eEEEECCCc-C-HHHHHHHHcCCEEEEEechhHHHHHHHHHHHhhcCCCCC-C-ceEE--EEEecCCCCCCCcCCCCCcE
Q 023543 125 KIVELGSGC-G-LVGCIAALLGAQVILTDLPDRLRLLKKNIENNLRHGDLR-G-SAVV--TELTWGDDPDQDLIQPLPDY 198 (281)
Q Consensus 125 ~VLELGcGt-G-~~~i~~a~~g~~V~~tD~~~~l~~~~~N~~~n~~~~~~~-~-~i~~--~~l~w~~~~~~~~~~~~fD~ 198 (281)
+|.=+|+|. | .++..+++.|.+|++.|.+...+.+ ..++...... + .... ..+...... . .-..+|+
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~D~ 76 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDEL----RAHGLTLTDYRGRDVRVPPSAIAFSTDP-A--ALATADL 76 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHHH----HhcCceeecCCCcceecccceeEeccCh-h--hccCCCE
Confidence 577788874 3 4556666678899999984332332 2233221000 0 0000 001111111 1 1246899
Q ss_pred EEEccccCCCCcHHHHHHHHHHhhCCCcEEEEE
Q 023543 199 VLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLA 231 (281)
Q Consensus 199 Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~ 231 (281)
|+.+=-. .....+++.+..+++++..++..
T Consensus 77 vil~vk~---~~~~~~~~~l~~~~~~~~iii~~ 106 (341)
T PRK08229 77 VLVTVKS---AATADAAAALAGHARPGAVVVSF 106 (341)
T ss_pred EEEEecC---cchHHHHHHHHhhCCCCCEEEEe
Confidence 8875433 23567778888888887764433
No 481
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=54.63 E-value=44 Score=30.03 Aligned_cols=98 Identities=19% Similarity=0.183 Sum_probs=48.0
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCC
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLP 196 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~f 196 (281)
.++.+||=.|||. |...+.+|+ .|.+ |++++. ++..+.+++ .+.. ..+......|.+..........+
T Consensus 167 ~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~ga~----~v~~~~~~~~~~~i~~~~~~~~~ 238 (345)
T cd08287 167 RPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALARE----FGAT----DIVAERGEEAVARVRELTGGVGA 238 (345)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCc----eEecCCcccHHHHHHHhcCCCCC
Confidence 4566776677653 444444444 6775 899988 434444432 1211 00000110110000001122458
Q ss_pred cEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 197 DYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 197 D~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
|+++.+ .-. ...+....+.++++|.++...
T Consensus 239 d~il~~--~g~----~~~~~~~~~~l~~~g~~v~~g 268 (345)
T cd08287 239 DAVLEC--VGT----QESMEQAIAIARPGGRVGYVG 268 (345)
T ss_pred CEEEEC--CCC----HHHHHHHHHhhccCCEEEEec
Confidence 888743 211 446777777888888876543
No 482
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=54.48 E-value=77 Score=27.32 Aligned_cols=81 Identities=16% Similarity=0.044 Sum_probs=48.5
Q ss_pred ccCCCeEEEECCCcCHH---HHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC------
Q 023543 120 LLHGKKIVELGSGCGLV---GCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ------ 189 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~---~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~------ 189 (281)
.++++++|=.|++.|+- +..++..|++|+.++. ++.++.+..++...+ .++.+...|..+....
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~~~~~ 80 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG------IEAHGYVCDVTDEDGVQAMVSQ 80 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC------CceEEEEcCCCCHHHHHHHHHH
Confidence 35789999999887642 2234457899999988 555655555544322 2456666665443211
Q ss_pred Cc-CCCCCcEEEEccccC
Q 023543 190 DL-IQPLPDYVLGSDVIY 206 (281)
Q Consensus 190 ~~-~~~~fD~Iia~d~iy 206 (281)
.. .-.++|+++.+.-+.
T Consensus 81 ~~~~~~~id~li~~ag~~ 98 (265)
T PRK07097 81 IEKEVGVIDILVNNAGII 98 (265)
T ss_pred HHHhCCCCCEEEECCCCC
Confidence 00 114689998766543
No 483
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=54.01 E-value=44 Score=30.43 Aligned_cols=110 Identities=14% Similarity=-0.005 Sum_probs=65.8
Q ss_pred cCCCeEEEECCCcCHHHHHHHHc--CCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCCCc
Q 023543 121 LHGKKIVELGSGCGLVGCIAALL--GAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPLPD 197 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a~~--g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~fD 197 (281)
...++||=+|-|-|-+--..++. --++..+|+ ..+++..++-...-.... ...++.....|-. .+-......+||
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy-~~~~v~l~iGDG~-~fl~~~~~~~~d 197 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGY-EGKKVKLLIGDGF-LFLEDLKENPFD 197 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhccc-CCCceEEEeccHH-HHHHHhccCCce
Confidence 56789999999987544444443 225899999 555776665444322211 1234444442211 111122357899
Q ss_pred EEEE--ccccCC--CCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 198 YVLG--SDVIYS--EGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 198 ~Iia--~d~iy~--~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+||- +|.+-. .--.++.++.+.+.||++|++....
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 9985 666533 1235778899999999999876554
No 484
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=53.82 E-value=45 Score=29.92 Aligned_cols=99 Identities=24% Similarity=0.242 Sum_probs=49.3
Q ss_pred ccCCCeEEEECCC-cCHHHHHHHH-cCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 120 LLHGKKIVELGSG-CGLVGCIAAL-LGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 120 ~~~~~~VLELGcG-tG~~~i~~a~-~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
..+|.+||=.|+| .|...+.+|+ .|.+ |++++. ++..+.++. .+.. .-+.....+|.+.......+..
T Consensus 163 ~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~----~g~~----~~~~~~~~~~~~~i~~~~~~~~ 234 (343)
T cd08235 163 IKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKK----LGAD----YTIDAAEEDLVEKVRELTDGRG 234 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc----EEecCCccCHHHHHHHHhCCcC
Confidence 3467888888865 2444444444 6888 888877 555554432 1211 0000000011000001122345
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+|+|+.+-. . ...+....+.++++|.++...
T Consensus 235 vd~vld~~~--~----~~~~~~~~~~l~~~g~~v~~~ 265 (343)
T cd08235 235 ADVVIVATG--S----PEAQAQALELVRKGGRILFFG 265 (343)
T ss_pred CCEEEECCC--C----hHHHHHHHHHhhcCCEEEEEe
Confidence 898875422 1 235555667788888876543
No 485
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=53.34 E-value=63 Score=27.24 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=25.3
Q ss_pred ccCCCeEEEECCCc-C-HHHHHHHHcCC-EEEEEech
Q 023543 120 LLHGKKIVELGSGC-G-LVGCIAALLGA-QVILTDLP 153 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G-~~~i~~a~~g~-~V~~tD~~ 153 (281)
.+.+++||=+|||. | .++..+++.|. +++.+|..
T Consensus 18 kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 18 RLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 36788999999994 4 34556667786 69999974
No 486
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=52.64 E-value=1.1e+02 Score=25.62 Aligned_cols=78 Identities=23% Similarity=0.325 Sum_probs=44.8
Q ss_pred cCCCeEEEECCCcCHHHHHHH----HcCCEEEEE-ec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC-C-c-
Q 023543 121 LHGKKIVELGSGCGLVGCIAA----LLGAQVILT-DL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ-D-L- 191 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a----~~g~~V~~t-D~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~-~-~- 191 (281)
+.++++|=.|+ +|.+|..++ ..|++|+.+ +. ++.++.+...+...+ .++.+...|..+.... . +
T Consensus 3 ~~~~~ilI~Ga-sg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~ 75 (247)
T PRK05565 3 LMGKVAIVTGA-SGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEG------GDAIAVKADVSSEEDVENLVE 75 (247)
T ss_pred CCCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC------CeEEEEECCCCCHHHHHHHHH
Confidence 46778888885 566666544 468898888 87 555544444433321 3466677666543211 0 0
Q ss_pred ----CCCCCcEEEEcccc
Q 023543 192 ----IQPLPDYVLGSDVI 205 (281)
Q Consensus 192 ----~~~~fD~Iia~d~i 205 (281)
.-+++|+|+.+.-.
T Consensus 76 ~~~~~~~~id~vi~~ag~ 93 (247)
T PRK05565 76 QIVEKFGKIDILVNNAGI 93 (247)
T ss_pred HHHHHhCCCCEEEECCCc
Confidence 01368998875543
No 487
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=52.39 E-value=35 Score=30.20 Aligned_cols=98 Identities=18% Similarity=0.155 Sum_probs=47.1
Q ss_pred ccCCCeEEEECC-C-cCHHHHHHHH-cCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCCcCCCC
Q 023543 120 LLHGKKIVELGS-G-CGLVGCIAAL-LGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 120 ~~~~~~VLELGc-G-tG~~~i~~a~-~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
..+|.+||=.|+ | .|...+.+|+ .|++++.+.- ++..+.++. .+.. .-+.....+|...........+
T Consensus 137 ~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~----~g~~----~~~~~~~~~~~~~i~~~~~~~~ 208 (324)
T cd08292 137 VKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRA----LGIG----PVVSTEQPGWQDKVREAAGGAP 208 (324)
T ss_pred CCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHh----cCCC----EEEcCCCchHHHHHHHHhCCCC
Confidence 346788888885 2 2444444444 6888766654 554444432 1221 0000000011000000112246
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
+|+|+. +... ..+....+.++++|+++...
T Consensus 209 ~d~v~d--~~g~-----~~~~~~~~~l~~~g~~v~~g 238 (324)
T cd08292 209 ISVALD--SVGG-----KLAGELLSLLGEGGTLVSFG 238 (324)
T ss_pred CcEEEE--CCCC-----hhHHHHHHhhcCCcEEEEEe
Confidence 898884 3322 13345567778888876554
No 488
>PLN02780 ketoreductase/ oxidoreductase
Probab=51.66 E-value=72 Score=28.89 Aligned_cols=59 Identities=17% Similarity=0.270 Sum_probs=38.0
Q ss_pred CCCeEEEECCCcCH---HHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecC
Q 023543 122 HGKKIVELGSGCGL---VGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWG 184 (281)
Q Consensus 122 ~~~~VLELGcGtG~---~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~ 184 (281)
.|+.+|=.|++.|+ ++..+++.|++|++++. ++.++.+...+...... .++.....|..
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~----~~~~~~~~Dl~ 114 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSK----TQIKTVVVDFS 114 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCC----cEEEEEEEECC
Confidence 47899999987664 33344557999999999 66676666655543211 24555566654
No 489
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=51.09 E-value=79 Score=26.63 Aligned_cols=80 Identities=21% Similarity=0.233 Sum_probs=46.4
Q ss_pred cCCCeEEEECCCcCHHHHHHH----HcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC--c--
Q 023543 121 LHGKKIVELGSGCGLVGCIAA----LLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD--L-- 191 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a----~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~--~-- 191 (281)
..+++||=.|+ +|.+|..++ ..|++|++++. .+.+..+...+...+ .++.+...|+.+..... +
T Consensus 4 ~~~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dl~~~~~~~~~~~~ 76 (251)
T PRK12826 4 LEGRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG------GKARARQVDVRDRAALKAAVAA 76 (251)
T ss_pred CCCCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEECCCCCHHHHHHHHHH
Confidence 46789998886 455566544 46889999998 454444444443322 24666676765432100 0
Q ss_pred ---CCCCCcEEEEccccCC
Q 023543 192 ---IQPLPDYVLGSDVIYS 207 (281)
Q Consensus 192 ---~~~~fD~Iia~d~iy~ 207 (281)
.-+++|+|+.+-..+.
T Consensus 77 ~~~~~~~~d~vi~~ag~~~ 95 (251)
T PRK12826 77 GVEDFGRLDILVANAGIFP 95 (251)
T ss_pred HHHHhCCCCEEEECCCCCC
Confidence 0136898887654443
No 490
>PRK05866 short chain dehydrogenase; Provisional
Probab=51.00 E-value=86 Score=27.83 Aligned_cols=79 Identities=23% Similarity=0.192 Sum_probs=46.3
Q ss_pred ccCCCeEEEECCCcCHHHHH----HHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC--Cc-
Q 023543 120 LLHGKKIVELGSGCGLVGCI----AALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ--DL- 191 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~----~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~--~~- 191 (281)
.+.+++||=.|++.| +|.. +++.|++|++++. .+.++.+...+...+ ..+.+...|..+.... .+
T Consensus 37 ~~~~k~vlItGasgg-IG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~------~~~~~~~~Dl~d~~~v~~~~~ 109 (293)
T PRK05866 37 DLTGKRILLTGASSG-IGEAAAEQFARRGATVVAVARREDLLDAVADRITRAG------GDAMAVPCDLSDLDAVDALVA 109 (293)
T ss_pred CCCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEccCCCHHHHHHHHH
Confidence 356789999997655 3444 3456889999998 555555544443321 2455666665432210 00
Q ss_pred ----CCCCCcEEEEcccc
Q 023543 192 ----IQPLPDYVLGSDVI 205 (281)
Q Consensus 192 ----~~~~fD~Iia~d~i 205 (281)
..++.|+++.+--+
T Consensus 110 ~~~~~~g~id~li~~AG~ 127 (293)
T PRK05866 110 DVEKRIGGVDILINNAGR 127 (293)
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 12468999976544
No 491
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=50.94 E-value=42 Score=30.93 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=25.3
Q ss_pred ccCCCeEEEECCCc-C-HHHHHHHHcCC-EEEEEech
Q 023543 120 LLHGKKIVELGSGC-G-LVGCIAALLGA-QVILTDLP 153 (281)
Q Consensus 120 ~~~~~~VLELGcGt-G-~~~i~~a~~g~-~V~~tD~~ 153 (281)
.+..++||=+|||. | .++..++..|. +++.+|..
T Consensus 21 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 21 KLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 35778999999984 4 34556667777 79999973
No 492
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=50.77 E-value=16 Score=36.36 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=27.5
Q ss_pred cccCCCeEEEECCCcCHHHHHHHHc---CCEEEEEec
Q 023543 119 LLLHGKKIVELGSGCGLVGCIAALL---GAQVILTDL 152 (281)
Q Consensus 119 ~~~~~~~VLELGcGtG~~~i~~a~~---g~~V~~tD~ 152 (281)
++.++..||||||-.|-..-++++. |.-|+|+|+
T Consensus 41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl 77 (780)
T KOG1098|consen 41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDL 77 (780)
T ss_pred cccccchheeeccCCcHHHHHHHHhCCCCceEEEeee
Confidence 3457889999999999888888873 445999998
No 493
>PRK12937 short chain dehydrogenase; Provisional
Probab=50.70 E-value=1.5e+02 Score=24.86 Aligned_cols=78 Identities=19% Similarity=0.165 Sum_probs=41.3
Q ss_pred cCCCeEEEECCCcCHHHHHHH----HcCCEEEEEec-h-hHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC--Cc-
Q 023543 121 LHGKKIVELGSGCGLVGCIAA----LLGAQVILTDL-P-DRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ--DL- 191 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a----~~g~~V~~tD~-~-~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~--~~- 191 (281)
+++++||=.|++.| +|..++ +.|++|+.+.. . ...+.+.+.+...+ .++.+...|..+.... .+
T Consensus 3 ~~~~~vlItG~~~~-iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~~~~ 75 (245)
T PRK12937 3 LSNKVAIVTGASRG-IGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAG------GRAIAVQADVADAAAVTRLFD 75 (245)
T ss_pred CCCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcC------CeEEEEECCCCCHHHHHHHHH
Confidence 56789999997544 454444 46888887765 2 22333333333221 2455666555432110 00
Q ss_pred ----CCCCCcEEEEcccc
Q 023543 192 ----IQPLPDYVLGSDVI 205 (281)
Q Consensus 192 ----~~~~fD~Iia~d~i 205 (281)
...+.|+++.+.-+
T Consensus 76 ~~~~~~~~id~vi~~ag~ 93 (245)
T PRK12937 76 AAETAFGRIDVLVNNAGV 93 (245)
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 01467888875443
No 494
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=50.59 E-value=93 Score=27.75 Aligned_cols=79 Identities=22% Similarity=0.262 Sum_probs=53.9
Q ss_pred cCCCeEEEECCCcCH---HHHHHHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC-----c
Q 023543 121 LHGKKIVELGSGCGL---VGCIAALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD-----L 191 (281)
Q Consensus 121 ~~~~~VLELGcGtG~---~~i~~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~-----~ 191 (281)
..++++|==|+-+|+ ++-.+|+.|.+|+++-. .+.|+.+.+.++...- ..+.+...|..+..+.. +
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~-----v~v~vi~~DLs~~~~~~~l~~~l 78 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTG-----VEVEVIPADLSDPEALERLEDEL 78 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhC-----ceEEEEECcCCChhHHHHHHHHH
Confidence 467889999987774 23345567999999999 7778888888877641 25778888876543321 1
Q ss_pred CC--CCCcEEEEccc
Q 023543 192 IQ--PLPDYVLGSDV 204 (281)
Q Consensus 192 ~~--~~fD~Iia~d~ 204 (281)
.. .++|++|.+.-
T Consensus 79 ~~~~~~IdvLVNNAG 93 (265)
T COG0300 79 KERGGPIDVLVNNAG 93 (265)
T ss_pred HhcCCcccEEEECCC
Confidence 11 47898887443
No 495
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=50.25 E-value=1e+02 Score=26.31 Aligned_cols=79 Identities=22% Similarity=0.252 Sum_probs=45.5
Q ss_pred ccCCCeEEEECCCcCHHHHH----HHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCCC----
Q 023543 120 LLHGKKIVELGSGCGLVGCI----AALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQD---- 190 (281)
Q Consensus 120 ~~~~~~VLELGcGtG~~~i~----~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~~---- 190 (281)
...+++||=.|++.| +|.. ++..|++|++++. .+.++.+...+...+ .++.+...|..+..+..
T Consensus 8 ~l~~k~vlVtG~s~g-IG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~------~~~~~~~~D~~~~~~i~~~~~ 80 (255)
T PRK06113 8 RLDGKCAIITGAGAG-IGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG------GQAFACRCDITSEQELSALAD 80 (255)
T ss_pred CcCCCEEEEECCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEccCCCHHHHHHHHH
Confidence 467899999997665 3443 3446889999988 555554433332211 24555666655432110
Q ss_pred -c--CCCCCcEEEEcccc
Q 023543 191 -L--IQPLPDYVLGSDVI 205 (281)
Q Consensus 191 -~--~~~~fD~Iia~d~i 205 (281)
. ...++|+++.+-.+
T Consensus 81 ~~~~~~~~~d~li~~ag~ 98 (255)
T PRK06113 81 FALSKLGKVDILVNNAGG 98 (255)
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 0 11467888876543
No 496
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=50.08 E-value=58 Score=28.54 Aligned_cols=95 Identities=22% Similarity=0.212 Sum_probs=48.0
Q ss_pred cCCCeEEEECCCcCHHHHHHH---H-cCCE-EEEEec-hhHHHHHHHHHHHhhcCCCCCCceEE-EEEecCCCCCCCcCC
Q 023543 121 LHGKKIVELGSGCGLVGCIAA---L-LGAQ-VILTDL-PDRLRLLKKNIENNLRHGDLRGSAVV-TELTWGDDPDQDLIQ 193 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~~a---~-~g~~-V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~-~~l~w~~~~~~~~~~ 193 (281)
.++.+||=.|+| .+|.+++ + .|.+ |+++.- ++..+.++ .-+.. .+.. ...++..........
T Consensus 128 ~~~~~vlI~g~g--~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~-----~~~~~~~~~~~~~l~~~~~~ 196 (312)
T cd08269 128 RAGKTVAVIGAG--FIGLLFLQLAAAAGARRVIAIDRRPARLALAR----ELGAT-----EVVTDDSEAIVERVRELTGG 196 (312)
T ss_pred CCCCEEEEECCC--HHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH----HhCCc-----eEecCCCcCHHHHHHHHcCC
Confidence 467788888754 4554443 3 6888 888887 55444332 11111 0000 000000000001122
Q ss_pred CCCcEEEEccccCCCCcHHHHHHHHHHhhCCCcEEEEEE
Q 023543 194 PLPDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTIFLAG 232 (281)
Q Consensus 194 ~~fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~~l~~ 232 (281)
..+|+++.+--- ...+....+.++++|.++...
T Consensus 197 ~~vd~vld~~g~------~~~~~~~~~~l~~~g~~~~~g 229 (312)
T cd08269 197 AGADVVIEAVGH------QWPLDLAGELVAERGRLVIFG 229 (312)
T ss_pred CCCCEEEECCCC------HHHHHHHHHHhccCCEEEEEc
Confidence 468988765211 346666777888888877553
No 497
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=50.03 E-value=32 Score=31.57 Aligned_cols=40 Identities=33% Similarity=0.489 Sum_probs=27.3
Q ss_pred cCCCeEEEECCCc-CHHHHHHHH-cCC-EEEEEec-hhHHHHHH
Q 023543 121 LHGKKIVELGSGC-GLVGCIAAL-LGA-QVILTDL-PDRLRLLK 160 (281)
Q Consensus 121 ~~~~~VLELGcGt-G~~~i~~a~-~g~-~V~~tD~-~~~l~~~~ 160 (281)
.+|.+||=.|+|. |..++.+|+ .|+ +|+++|. ++.++.++
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~ 229 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAK 229 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 5688999998753 444444444 687 7999998 66666654
No 498
>PRK07890 short chain dehydrogenase; Provisional
Probab=49.95 E-value=1e+02 Score=26.14 Aligned_cols=78 Identities=26% Similarity=0.275 Sum_probs=45.0
Q ss_pred cCCCeEEEECCCcCHHHHH----HHHcCCEEEEEec-hhHHHHHHHHHHHhhcCCCCCCceEEEEEecCCCCCC--Cc--
Q 023543 121 LHGKKIVELGSGCGLVGCI----AALLGAQVILTDL-PDRLRLLKKNIENNLRHGDLRGSAVVTELTWGDDPDQ--DL-- 191 (281)
Q Consensus 121 ~~~~~VLELGcGtG~~~i~----~a~~g~~V~~tD~-~~~l~~~~~N~~~n~~~~~~~~~i~~~~l~w~~~~~~--~~-- 191 (281)
.++++||=.|++.| +|.. ++..|++|+++|. ++.++.+...+...+ .++.+...|..+.... .+
T Consensus 3 l~~k~vlItGa~~~-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~ 75 (258)
T PRK07890 3 LKGKVVVVSGVGPG-LGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG------RRALAVPTDITDEDQCANLVAL 75 (258)
T ss_pred cCCCEEEEECCCCc-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC------CceEEEecCCCCHHHHHHHHHH
Confidence 46789999997655 3443 4457899999998 554544444333222 2455666665432210 00
Q ss_pred ---CCCCCcEEEEcccc
Q 023543 192 ---IQPLPDYVLGSDVI 205 (281)
Q Consensus 192 ---~~~~fD~Iia~d~i 205 (281)
.-.++|+|+.+...
T Consensus 76 ~~~~~g~~d~vi~~ag~ 92 (258)
T PRK07890 76 ALERFGRVDALVNNAFR 92 (258)
T ss_pred HHHHcCCccEEEECCcc
Confidence 01467988876544
No 499
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=49.90 E-value=51 Score=30.02 Aligned_cols=87 Identities=20% Similarity=0.124 Sum_probs=49.2
Q ss_pred HHHHHHHcCCEEEEEec-hh-------HHHHHHHHHHHhhcCC----C--------CCCceEEEEEecCCCCCCCcCCCC
Q 023543 136 VGCIAALLGAQVILTDL-PD-------RLRLLKKNIENNLRHG----D--------LRGSAVVTELTWGDDPDQDLIQPL 195 (281)
Q Consensus 136 ~~i~~a~~g~~V~~tD~-~~-------~l~~~~~N~~~n~~~~----~--------~~~~i~~~~l~w~~~~~~~~~~~~ 195 (281)
++..+|..|.+|++.|. ++ .++.+++++..+.... . ...++.+.. ++ ..... -..
T Consensus 5 iA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~--~~~~a--~~~ 79 (314)
T PRK08269 5 IALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVA-RD--GAADA--LAD 79 (314)
T ss_pred HHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeec-Cc--chHHH--hcc
Confidence 35566678999999999 63 3555666655431110 0 001233221 00 00011 144
Q ss_pred CcEEEEccccCCCCcHHHHHHHHHHhhCCCcEE
Q 023543 196 PDYVLGSDVIYSEGAVGDLLDTLLQLCGTQTTI 228 (281)
Q Consensus 196 fD~Iia~d~iy~~~~~~~ll~~l~~ll~~~g~~ 228 (281)
.|+|+-+ +.-+...-..++..+.+.++|++++
T Consensus 80 aD~ViEa-v~E~~~~K~~~f~~l~~~~~~~~il 111 (314)
T PRK08269 80 ADLVFEA-VPEVLDAKREALRWLGRHVDADAII 111 (314)
T ss_pred CCEEEEC-CcCCHHHHHHHHHHHHhhCCCCcEE
Confidence 6888866 4444556678888899999998776
No 500
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=49.84 E-value=1.6e+02 Score=27.71 Aligned_cols=35 Identities=34% Similarity=0.616 Sum_probs=21.8
Q ss_pred EEEECCCc-CH-HHHHHHHcCCEEEEEec-hhHHHHHHH
Q 023543 126 IVELGSGC-GL-VGCIAALLGAQVILTDL-PDRLRLLKK 161 (281)
Q Consensus 126 VLELGcGt-G~-~~i~~a~~g~~V~~tD~-~~~l~~~~~ 161 (281)
|-=+|+|. |+ ++..+| .|.+|++.|+ ++.++.+++
T Consensus 3 I~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 3 ITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLND 40 (388)
T ss_pred EEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHc
Confidence 44456663 43 233334 4888999999 667776654
Done!