BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023545
(281 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2G0Y|A Chain A, Crystal Structure Of A Lumenal Pentapeptide Repeat Protein
From Cyanothece Sp 51142 At 2.3 Angstrom Resolution.
Tetragonal Crystal Form
Length = 184
Score = 87.8 bits (216), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 67/112 (59%)
Query: 130 ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVR 189
A FT+AD+ +S+FS + GA + A+ GADL++ L A+LTNAVL
Sbjct: 72 AQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLTNAVLTE 131
Query: 190 TVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGC 241
++ R+ A I GADFS AV+D+ + LC A+G NP TGVSTR+SL C
Sbjct: 132 AIMMRTKFDDAKITGADFSLAVLDVYEVDKLCDRADGVNPKTGVSTRESLRC 183
>pdb|2F3L|A Chain A, Crystal Structure Of A Lumenal Rfr-Domain Protein
(Contig83.1_1_243_746) From Cyanothece Sp. 51142 At 2.1
Angstrom Resolution
Length = 184
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 66/112 (58%)
Query: 130 ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVR 189
A FT+AD+ +S+FS + GA + A+ GADL++ L A+LTNAVL
Sbjct: 72 AQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLTNAVLTE 131
Query: 190 TVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGC 241
+ R+ A I GADFS AV+D+ + LC A+G NP TGVSTR+SL C
Sbjct: 132 AIXXRTKFDDAKITGADFSLAVLDVYEVDKLCDRADGVNPKTGVSTRESLRC 183
>pdb|3N90|A Chain A, The 1.7 Angstrom Resolution Crystal Structure Of
At2g44920, A Pentapeptide Repeat Protein From
Arabidopsis Thaliana Thylakoid Lumen
Length = 152
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 68/120 (56%), Gaps = 11/120 (9%)
Query: 128 FRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLM---DRMVLN--EANL 182
R +F ++ +R+++F G+K GA + A+ TGADLS+ + D + N + NL
Sbjct: 29 IRQDFKTSILRQANFKGAKLLGASF-----FDADLTGADLSEADLRGADFSLANVTKVNL 83
Query: 183 TNAVLV-RTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGC 241
TNA L T++ + G+ I GADF+D + Q+ LCK A+G N TG +TR +L C
Sbjct: 84 TNANLEGATMMGNTSFKGSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNATRDTLLC 143
>pdb|2J8K|A Chain A, Structure Of The Fusion Of Np275 And Np276, Pentapeptide
Repeat Proteins From Nostoc Punctiforme
Length = 201
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 65/147 (44%), Gaps = 37/147 (25%)
Query: 113 FGSADLRKAVHVKENF-----------RANFTSADMRESDFSGSKFNGAYLEKAVAYKAN 161
F DLR AV N AN A++ +D SG+ NGA L AN
Sbjct: 37 FSIVDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLR-----GAN 91
Query: 162 FTGADLSD----------TLMDRMVLNEANLTNAVLVRTVLTR-----SDLGGAIIEGAD 206
+ ADLSD ++D VLN+ANL A L + +L+ +DL A +E AD
Sbjct: 92 LSKADLSDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLEAAD 151
Query: 207 FSD---AVIDLAQ---KQALCKYANGT 227
S A+ DL Q QA + AN T
Sbjct: 152 LSGADLAIADLHQANLHQAALERANLT 178
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 16/106 (15%)
Query: 131 NFTSADMRES-----DFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNA 185
+F+ D+R + + SG+ +GA L++A +AN + ADLS LN A+L A
Sbjct: 36 DFSIVDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGA-----TLNGADLRGA 90
Query: 186 VLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ------KQALCKYAN 225
L + L+ + L AI+EGA +AV++ A +QA+ +AN
Sbjct: 91 NLSKADLSDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHAN 136
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 31/100 (31%)
Query: 111 AQFGSADLRKAVHVKENFR------ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTG 164
A +A+L +A+ N R AN +AD+ +D + + + A L +A +AN TG
Sbjct: 120 ANLKAANLEQAILSHANIREADLSEANLEAADLSGADLAIADLHQANLHQAALERANLTG 179
Query: 165 ADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEG 204
A+L D ++L G I+EG
Sbjct: 180 ANLED-------------------------ANLEGTILEG 194
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 34/121 (28%)
Query: 109 SAAQFGSADLRKAVHVKENFRANFTSADMRESDFSGSKFNGAYLEKAVAYKANF------ 162
S A ADLR A N + AD+ ++ + GA L++AV +AN
Sbjct: 78 SGATLNGADLRGA---------NLSKADLSDAILDNAILEGAILDEAVLNQANLKAANLE 128
Query: 163 -------------------TGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIE 203
ADLS + L++ANL A L R LT ++L A +E
Sbjct: 129 QAILSHANIREADLSEANLEAADLSGADLAIADLHQANLHQAALERANLTGANLEDANLE 188
Query: 204 G 204
G
Sbjct: 189 G 189
>pdb|3DU1|X Chain X, The 2.0 Angstrom Resolution Crystal Structure Of Hetl, A
Pentapeptide Repeat Protein Involved In Heterocyst
Differentiation Regulation From The Cyanobacterium
Nostoc Sp. Strain Pcc 7120
Length = 257
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 130 ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVR 189
A+ + AD+R++ S F+ L +A +A G DLS+ + R +L EA+LT A LV+
Sbjct: 55 ADLSYADLRQTRLGKSNFSHTCLREADLSEAILWGIDLSEADLYRAILREADLTGAKLVK 114
Query: 190 TVLTRSDLGGAIIEGADFSDA 210
T L ++L A + GA+ + A
Sbjct: 115 TRLEEANLIKASLCGANLNSA 135
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 116 ADLRKAVHVKENF-RANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDR 174
ADL +A+ + A+ A +RE+D +G+K LE+A KA+ GA+L+ + R
Sbjct: 80 ADLSEAILWGIDLSEADLYRAILREADLTGAKLVKTRLEEANLIKASLCGANLNSANLSR 139
Query: 175 MVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 210
+L +A+L + RT DLG ++ GAD S A
Sbjct: 140 CLLFQADLRPSSNQRT-----DLGYVLLTGADLSYA 170
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 116 ADLRKAVHVKENF-RANFTSADMRESDFSGSKFNGAYLEKAVAYKANF--------TGAD 166
ADLR + + + + T AD+ +D + + A L+ A +ANF AD
Sbjct: 145 ADLRPSSNQRTDLGYVLLTGADLSYADLRAASLHHANLDGAKLCRANFGRTIQWGNLAAD 204
Query: 167 LSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVI 212
LS + L+ ANL +A+L + L +DL GAI++ A+ A++
Sbjct: 205 LSGASLQGADLSYANLESAILRKANLQGADLTGAILKDAELKGAIM 250
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 29/130 (22%)
Query: 113 FGSADLRKAVHVKENF------RANFTSADMRESDFSGSKFNGAYLEKAVAYKANF---- 162
ADL +A+ + + + A++ ++ G+ N A L + + ++A+
Sbjct: 92 LSEADLYRAILREADLTGAKLVKTRLEEANLIKASLCGANLNSANLSRCLLFQADLRPSS 151
Query: 163 -----------TGADLSDTLMDRMVLNEANLTNAVLVRTVLTRS--------DLGGAIIE 203
TGADLS + L+ ANL A L R R+ DL GA ++
Sbjct: 152 NQRTDLGYVLLTGADLSYADLRAASLHHANLDGAKLCRANFGRTIQWGNLAADLSGASLQ 211
Query: 204 GADFSDAVID 213
GAD S A ++
Sbjct: 212 GADLSYANLE 221
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 118 LRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMV 176
LR K NF+ N ++ + +G+ + A L + K+NF+ L + + +
Sbjct: 27 LRHYAAGKRNFQHINLQEIELTNASLTGADLSYADLRQTRLGKSNFSHTCLREADLSEAI 86
Query: 177 LNEANLTNAVLVRTVLTRSDLGGA 200
L +L+ A L R +L +DL GA
Sbjct: 87 LWGIDLSEADLYRAILREADLTGA 110
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Query: 147 FNGAYLEKAVAYKANFTGADLS--DTLMDRM--------VLNEANLTNAVLVRTVLTRSD 196
F L++ A+ TGADLS D R+ L EA+L+ A+L L+ +D
Sbjct: 37 FQHINLQEIELTNASLTGADLSYADLRQTRLGKSNFSHTCLREADLSEAILWGIDLSEAD 96
Query: 197 LGGAIIEGADFSDA 210
L AI+ AD + A
Sbjct: 97 LYRAILREADLTGA 110
>pdb|2J8I|A Chain A, Structure Of Np275, A Pentapeptide Repeat Protein From
Nostoc Punctiforme
pdb|2J8I|B Chain B, Structure Of Np275, A Pentapeptide Repeat Protein From
Nostoc Punctiforme
Length = 118
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 139 ESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLG 198
E DFS GA LE N +GA L ++D L +ANL+ A L L +DL
Sbjct: 34 ERDFSIVDLRGAVLENI-----NLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLR 88
Query: 199 GAIIEGADFSDAVID 213
GA + AD SDA++D
Sbjct: 89 GANLSKADLSDAILD 103
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 39/86 (45%), Gaps = 16/86 (18%)
Query: 113 FGSADLRKAVHVKENF-----------RANFTSADMRESDFSGSKFNGAYLEKAVAYKAN 161
F DLR AV N AN A++ +D SG+ NGA L A N
Sbjct: 37 FSIVDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLRGA-----N 91
Query: 162 FTGADLSDTLMDRMVLNEANLTNAVL 187
+ ADLSD ++D +L A L AVL
Sbjct: 92 LSKADLSDAILDNAILEGAILDEAVL 117
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 10/88 (11%)
Query: 131 NFTSADMRES-----DFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNA 185
+F+ D+R + + SG+ +GA L++A +AN + ADLS LN A+L A
Sbjct: 36 DFSIVDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGA-----TLNGADLRGA 90
Query: 186 VLVRTVLTRSDLGGAIIEGADFSDAVID 213
L + L+ + L AI+EGA +AV++
Sbjct: 91 NLSKADLSDAILDNAILEGAILDEAVLN 118
>pdb|2O6W|A Chain A, Crystal Structure Of A Pentapeptide Repeat Protein (Rfr23)
From The Cyanobacterium Cyanothece 51142
Length = 150
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 129 RANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLV 188
RAN ++A++ +SD S LE A+ + N + DL + ++ L ANL NA L
Sbjct: 60 RANLSNANLYQSDLSS-----IILENAILVETNLSETDLENAILIGANLQGANLENANLQ 114
Query: 189 RTVLTRSDLGGAIIEGADFSD 209
L ++L GAI+ G + +
Sbjct: 115 GANLENANLRGAILTGVNLEE 135
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 125 KENF----RANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEA 180
+ENF R +S+ + + F K L +A AN +DLS +++ +L E
Sbjct: 27 RENFGLKYRIPRSSSPLVTTPFGXDKAKPVDLTRANLSNANLYQSDLSSIILENAILVET 86
Query: 181 NLTNAVLVRTVLTRSDLGGAIIEGADFSDAVID 213
NL+ L +L ++L GA +E A+ A ++
Sbjct: 87 NLSETDLENAILIGANLQGANLENANLQGANLE 119
>pdb|3SQV|A Chain A, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|B Chain B, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
Length = 616
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 157 AYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 216
A + N++G DLS + + L+ N + AVL T L SDL A++E F +++++
Sbjct: 32 AEELNYSGCDLSGLSLVGLNLSSVNFSGAVLDDTDLRMSDLSQAVLENCSFKNSILN--- 88
Query: 217 KQALCKYANGTNPIT 231
+ C YAN +N I
Sbjct: 89 ECNFC-YANLSNCII 102
>pdb|3NAW|A Chain A, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NAW|B Chain B, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|A Chain A, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|B Chain B, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|C Chain C, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|D Chain D, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
Length = 613
Score = 34.3 bits (77), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 157 AYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 216
A + N++G DLS + + L+ N + AVL T L SDL A++E F +++++
Sbjct: 29 AEELNYSGCDLSGLSLVGLNLSSVNFSGAVLDDTDLRMSDLSQAVLENCSFKNSILN--- 85
Query: 217 KQALCKYANGTNPIT 231
+ C YAN +N I
Sbjct: 86 ECNFC-YANLSNCII 99
>pdb|4HTG|A Chain A, Porphobilinogen Deaminase From Arabidopsis Thaliana
Length = 320
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 14/87 (16%)
Query: 99 AETRGEFGIGSAAQFGSADLRK---------AVHVKENFRANFTSADMRESDFSGSKFNG 149
A T E GS G+A LR+ A+HV+ENFR N + R S G K
Sbjct: 124 AATLAELPAGSV--VGTASLRRKSQILHKYPALHVEENFRGNVQT---RLSKLQGGKVQA 178
Query: 150 AYLEKAVAYKANFTGADLSDTLMDRMV 176
L A + + T S +D M+
Sbjct: 179 TLLALAGLKRLSMTENVASILSLDEML 205
>pdb|2XTX|A Chain A, Structure Of Qnrb1 (M102r-Trypsin Treated), A Plasmid-
Mediated Fluoroquinolone Resistance Protein
pdb|2XTX|B Chain B, Structure Of Qnrb1 (M102r-Trypsin Treated), A Plasmid-
Mediated Fluoroquinolone Resistance Protein
Length = 217
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 46/120 (38%), Gaps = 19/120 (15%)
Query: 111 AQFGSADLRKAVHVKENFRANFTSADMRESDFSGSKFNGAYLEKAVAYK----------A 160
A F A R + R F SA + ++ S + F+ LEK ++ A
Sbjct: 97 ADFRGASFRNMITT----RTWFCSAYITNTNLSYANFSKVVLEKCELWENRWIGAQVLGA 152
Query: 161 NFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQAL 220
F+G+DLS AN T+ LT S+LG I G D +D Q L
Sbjct: 153 TFSGSDLSGGEFSTFDWRAANFTHC-----DLTNSELGDLDIRGVDLQGVKLDNYQASLL 207
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 10/89 (11%)
Query: 130 ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMV----------LNE 179
A F S D+ +DF S G + A A+F GA + + R L+
Sbjct: 67 AIFKSCDLSMADFRNSSALGIEIRHCRAQGADFRGASFRNMITTRTWFCSAYITNTNLSY 126
Query: 180 ANLTNAVLVRTVLTRSDLGGAIIEGADFS 208
AN + VL + L + GA + GA FS
Sbjct: 127 ANFSKVVLEKCELWENRWIGAQVLGATFS 155
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 146 KFNGAYLEKAVAYKANFTGADLSDT------LMDRMVLNEANLTNAVLVRTVLTRSDLGG 199
+F G +E + + +F+GADLS T DR N + A+L + DL
Sbjct: 17 RFTGEKIENSTFFNCDFSGADLSGTEFIGCQFYDRESQKGCNFSRAMLKDAIFKSCDLSM 76
Query: 200 A 200
A
Sbjct: 77 A 77
>pdb|2XTW|A Chain A, Structure Of Qnrb1 (Full Length), A Plasmid-Mediated
Fluoroquinolone Resistance Protein
pdb|2XTW|B Chain B, Structure Of Qnrb1 (Full Length), A Plasmid-Mediated
Fluoroquinolone Resistance Protein
pdb|2XTW|C Chain C, Structure Of Qnrb1 (Full Length), A Plasmid-Mediated
Fluoroquinolone Resistance Protein
pdb|2XTW|D Chain D, Structure Of Qnrb1 (Full Length), A Plasmid-Mediated
Fluoroquinolone Resistance Protein
Length = 217
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 10/89 (11%)
Query: 130 ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMV----------LNE 179
A F S D+ +DF S G + A A+F GA + + R L+
Sbjct: 67 AIFKSCDLSMADFRNSSALGIEIRHCRAQGADFRGASFMNMITTRTWFCSAYITNTNLSY 126
Query: 180 ANLTNAVLVRTVLTRSDLGGAIIEGADFS 208
AN + VL + L + GA + GA FS
Sbjct: 127 ANFSKVVLEKCELWENRWIGAQVLGATFS 155
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 15/102 (14%)
Query: 129 RANFTSADMRESDFSGSKFNGAYLEKAVAYK----------ANFTGADLSDTLMDRMVLN 178
R F SA + ++ S + F+ LEK ++ A F+G+DLS
Sbjct: 111 RTWFCSAYITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATFSGSDLSGGEFSTFDWR 170
Query: 179 EANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQAL 220
AN T+ LT S+LG I G D +D Q L
Sbjct: 171 AANFTHC-----DLTNSELGDLDIRGVDLQGVKLDNYQASLL 207
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 146 KFNGAYLEKAVAYKANFTGADLSDT------LMDRMVLNEANLTNAVLVRTVLTRSDLGG 199
+F G +E + + +F+GADLS T DR N + A+L + DL
Sbjct: 17 RFTGEKIENSTFFNCDFSGADLSGTEFIGCQFYDRESQKGCNFSRAMLKDAIFKSCDLSM 76
Query: 200 A 200
A
Sbjct: 77 A 77
>pdb|2XTY|A Chain A, Structure Of Qnrb1 (R167e-Trypsin Treated), A Plasmid-
Mediated Fluoroquinolone Resistance Protein
pdb|2XTY|B Chain B, Structure Of Qnrb1 (R167e-Trypsin Treated), A Plasmid-
Mediated Fluoroquinolone Resistance Protein
Length = 217
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 15/102 (14%)
Query: 129 RANFTSADMRESDFSGSKFNGAYLEKAVAYK----------ANFTGADLSDTLMDRMVLN 178
R F SA + ++ S + F+ LEK ++ A F+G+DLS
Sbjct: 111 RTWFCSAYITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATFSGSDLSGGEFSTFDWE 170
Query: 179 EANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQAL 220
AN T+ LT S+LG I G D +D Q L
Sbjct: 171 AANFTHC-----DLTNSELGDLDIRGVDLQGVKLDNYQASLL 207
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 10/89 (11%)
Query: 130 ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMV----------LNE 179
A F S D+ +DF S G + A A+F GA + + R L+
Sbjct: 67 AIFKSCDLSMADFRNSSALGIEIRHCRAQGADFRGASFMNMITTRTWFCSAYITNTNLSY 126
Query: 180 ANLTNAVLVRTVLTRSDLGGAIIEGADFS 208
AN + VL + L + GA + GA FS
Sbjct: 127 ANFSKVVLEKCELWENRWIGAQVLGATFS 155
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 146 KFNGAYLEKAVAYKANFTGADLSDT------LMDRMVLNEANLTNAVLVRTVLTRSDLGG 199
+F G +E + + +F+GADLS T DR N + A+L + DL
Sbjct: 17 RFTGEKIENSTFFNCDFSGADLSGTEFIGCQFYDRESQKGCNFSRAMLKDAIFKSCDLSM 76
Query: 200 A 200
A
Sbjct: 77 A 77
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 153 EKAVAYKANFTGADLSDTL-MDRMVLNE-ANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 210
EK + ++ +L + L + +++N+ A + +V+T+ SD A+ G DFS
Sbjct: 105 EKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVK 164
Query: 211 VIDLAQKQALCKY 223
V DL+QK L Y
Sbjct: 165 VWDLSQKAVLKSY 177
>pdb|3OF4|A Chain A, Crystal Structure Of A FmnFAD- And Nad(P)h-Dependent
Nitroreductase (Nfnb, Il2077) From Idiomarina Loihiensis
L2tr At 1.90 A Resolution
pdb|3OF4|B Chain B, Crystal Structure Of A FmnFAD- And Nad(P)h-Dependent
Nitroreductase (Nfnb, Il2077) From Idiomarina Loihiensis
L2tr At 1.90 A Resolution
pdb|3OF4|C Chain C, Crystal Structure Of A FmnFAD- And Nad(P)h-Dependent
Nitroreductase (Nfnb, Il2077) From Idiomarina Loihiensis
L2tr At 1.90 A Resolution
Length = 209
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 4/38 (10%)
Query: 149 GAYLEKAVAYK---ANFTGADLSDTLMDRMVLNEANLT 183
G YLEK ++ A+F+GA ++D ++D++ LN LT
Sbjct: 1 GXYLEKLQQWRYATADFSGAHITDDVLDKL-LNTTRLT 37
>pdb|3PSS|A Chain A, Crystal Structure Of Ahqnr, The Qnr Protein From Aeromonas
Hydrophila (P21 Crystal Form)
pdb|3PSS|B Chain B, Crystal Structure Of Ahqnr, The Qnr Protein From Aeromonas
Hydrophila (P21 Crystal Form)
Length = 216
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 130 ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVR 189
ANF + + + SG+++ GA L + A+ G+DLS + ++ NL
Sbjct: 126 ANFEGCLLEQCELSGNRWQGANL-----FGASLAGSDLSGSEFGQIDWASVNLQGC---- 176
Query: 190 TVLTRSDLGGAIIEGADFSDAVIDLAQKQAL 220
L + DL G + + I+ Q+QAL
Sbjct: 177 -DLRQCDLPGLDLRRVNLDGVQINEDQQQAL 206
>pdb|3PSZ|A Chain A, Crystal Structure Of Ahqnr, The Qnr Protein From Aeromonas
Hydrophila (P21212 Crystal Form)
pdb|3PSZ|B Chain B, Crystal Structure Of Ahqnr, The Qnr Protein From Aeromonas
Hydrophila (P21212 Crystal Form)
Length = 216
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 130 ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVR 189
ANF + + + SG+++ GA L + A+ G+DLS + ++ NL
Sbjct: 126 ANFEGCLLEQCELSGNRWQGANL-----FGASLAGSDLSGSEFGQIDWASVNLQGC---- 176
Query: 190 TVLTRSDLGGAIIEGADFSDAVIDLAQKQAL 220
L + DL G + + I+ Q+QAL
Sbjct: 177 -DLRQCDLPGLDLRRVNLDGVQINEDQQQAL 206
>pdb|2BM4|A Chain A, The Structure Of Mfpa (Rv3361c, C2 Crystal Form). The
Pentapeptide Repeat Protein From Mycobacterium
Tuberculosis Folds As A Right-Handed Quadrilateral Beta-
Helix.
pdb|2BM4|B Chain B, The Structure Of Mfpa (Rv3361c, C2 Crystal Form). The
Pentapeptide Repeat Protein From Mycobacterium
Tuberculosis Folds As A Right-Handed Quadrilateral Beta-
Helix.
pdb|2BM5|A Chain A, The Structure Of Mfpa (Rv3361c, P21 Crystal Form). The
Pentapeptide Repeat Protein From Mycobacterium
Tuberculosis Folds As A Right-Handed Quadrilateral Beta-
Helix.
pdb|2BM5|B Chain B, The Structure Of Mfpa (Rv3361c, P21 Crystal Form). The
Pentapeptide Repeat Protein From Mycobacterium
Tuberculosis Folds As A Right-Handed Quadrilateral Beta-
Helix.
pdb|2BM6|A Chain A, The Structure Of Mfpa (Rv3361c, C2221 Crystal Form). The
Pentapeptide Repeat Protein From Mycobacterium
Tuberculosis Folds As A Right-Handed Quadrilateral Beta-
Helix.
pdb|2BM7|A Chain A, The Structure Of Mfpa (Rv3361c, P3221 Crystal Form). The
Pentapeptide Repeat Protein From Mycobacterium
Tuberculosis Folds As A Right-Handed Quadrilateral Beta-
Helix.
pdb|2BM7|B Chain B, The Structure Of Mfpa (Rv3361c, P3221 Crystal Form). The
Pentapeptide Repeat Protein From Mycobacterium
Tuberculosis Folds As A Right-Handed Quadrilateral Beta-
Helix.
pdb|2BM7|C Chain C, The Structure Of Mfpa (Rv3361c, P3221 Crystal Form). The
Pentapeptide Repeat Protein From Mycobacterium
Tuberculosis Folds As A Right-Handed Quadrilateral Beta-
Helix
Length = 186
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 5/119 (4%)
Query: 93 DLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAY 151
DL++ E R F S F +L ++ H FR F + S F+ G+
Sbjct: 21 DLSRLHTE-RAMF---SECDFSGVNLAESQHRGSAFRNCTFERTTLWHSTFAQCSMLGSV 76
Query: 152 LEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 210
D + ++ L NLT L T L +DL ++ GAD S A
Sbjct: 77 FVACRLRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGA 135
>pdb|2QFV|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFW|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFX|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFY|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
Length = 427
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 8/45 (17%)
Query: 213 DLAQKQALCKYANGTNPIT-------GVSTRK-SLGCGNSRRNAY 249
+L ALCK+AN T G+ T+ +L CGN+ R+AY
Sbjct: 361 ELDNTPALCKFANILESATLNTVQQDGIMTKDLALACGNNERSAY 405
>pdb|2XT2|A Chain A, Structure Of The Pentapeptide Repeat Protein Albg, A
Resistance Factor For The Topoisomerase Poison
Albicidin.
pdb|2XT2|B Chain B, Structure Of The Pentapeptide Repeat Protein Albg, A
Resistance Factor For The Topoisomerase Poison Albicidin
Length = 200
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 130 ANFTSADMRESDFSGSKFNGAY-LEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLV 188
N+TSA + K GA E+ + + F G L+ M +++AN T A
Sbjct: 84 VNWTSAQ-----WPSVKMEGALSFERCILNDSLFYGLYLAGVKMVECRIHDANFTEADCE 138
Query: 189 RTVLTRSDLGGAI-----IEGADFSDAV 211
T+SDL G+ + GA F DAV
Sbjct: 139 DADFTQSDLKGSTFHNTKLTGASFIDAV 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,961,679
Number of Sequences: 62578
Number of extensions: 234706
Number of successful extensions: 551
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 412
Number of HSP's gapped (non-prelim): 81
length of query: 281
length of database: 14,973,337
effective HSP length: 98
effective length of query: 183
effective length of database: 8,840,693
effective search space: 1617846819
effective search space used: 1617846819
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)