BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023545
(281 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8H1Q1|TL225_ARATH Thylakoid lumenal protein At1g12250, chloroplastic OS=Arabidopsis
thaliana GN=At1g12250 PE=1 SV=1
Length = 280
Score = 361 bits (927), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 203/285 (71%), Positives = 230/285 (80%), Gaps = 9/285 (3%)
Query: 1 MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQ--- 57
MA SS+SPL +KSL+ SSS + + L Q+SS+ S+ + D SN +
Sbjct: 1 MAFSSLSPLPMKSLDISRSSSSVSRSPYHFQRYLLRRLQLSSR--SNLEIKDSSNTREGC 58
Query: 58 CAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSAD 117
C+ A+ W+ +S A+AAAV+AS SS + A+A+LN++EA+TRGEFGIGSAAQ+GSAD
Sbjct: 59 CSS--AESNTWKRILSAAMAAAVIAS-SSGVPAMAELNRFEADTRGEFGIGSAAQYGSAD 115
Query: 118 LRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMV 176
L K VH ENFR ANFTSADMRESDFSGS FNGAYLEKAVAYKANF+GADLSDTLMDRMV
Sbjct: 116 LSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMV 175
Query: 177 LNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTR 236
LNEANLTNAVLVR+VLTRSDLGGA IEGADFSDAVIDL QKQALCKYA GTNP+TGV TR
Sbjct: 176 LNEANLTNAVLVRSVLTRSDLGGAKIEGADFSDAVIDLLQKQALCKYATGTNPLTGVDTR 235
Query: 237 KSLGCGNSRRNAYGSPSSPLLSAPPQKLLDRDGFCDSGTGLCDAK 281
KSLGCGNSRRNAYGSPSSPLLSAPPQ+LL RDGFCD TGLCD K
Sbjct: 236 KSLGCGNSRRNAYGSPSSPLLSAPPQRLLGRDGFCDEKTGLCDVK 280
>sp|O22160|TL15A_ARATH Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis
thaliana GN=At2g44920 PE=1 SV=2
Length = 224
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 67/120 (55%), Gaps = 11/120 (9%)
Query: 128 FRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLM---DRMVLN--EANL 182
R +F ++ +R+++F G+K GA + A+ TGADLS+ + D + N + NL
Sbjct: 109 IRQDFKTSILRQANFKGAKLLGASF-----FDADLTGADLSEADLRGADFSLANVTKVNL 163
Query: 183 TNAVLV-RTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGC 241
TNA L TV + G+ I GADF+D + Q+ LCK A+G N TG +TR +L C
Sbjct: 164 TNANLEGATVTGNTSFKGSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNATRDTLLC 223
>sp|Q55837|Y516_SYNY3 Uncharacterized protein slr0516 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr0516 PE=4 SV=1
Length = 166
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Query: 131 NFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEAN-----LTNA 185
N +A + SD SG+ +G L +A+ +AN TGA+LS+T + L EAN L+ A
Sbjct: 54 NLENARLNRSDLSGANLSGVNLRRALLDRANLTGANLSETDLTEAALTEANLAGADLSGA 113
Query: 186 VLVRTVLTRSDLGGAIIEGADFS 208
L R+ L DL GA ++GA+ +
Sbjct: 114 NLERSFLRDVDLTGANLKGANLA 136
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 10/83 (12%)
Query: 131 NFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRT 190
N AD+RE FN LE A +++ +GA+LS + R +L+ ANLT A L T
Sbjct: 44 NLAGADLRE-------FN---LENARLNRSDLSGANLSGVNLRRALLDRANLTGANLSET 93
Query: 191 VLTRSDLGGAIIEGADFSDAVID 213
LT + L A + GAD S A ++
Sbjct: 94 DLTEAALTEANLAGADLSGANLE 116
Score = 38.1 bits (87), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 15/120 (12%)
Query: 92 ADLNKYEAET-RGEFGIGSAAQFGSADLRKAVHVKENFRANFTSADMRESDFSGSKFNGA 150
ADL ++ E R S A +LR+A+ RAN T A++ E+D +
Sbjct: 48 ADLREFNLENARLNRSDLSGANLSGVNLRRALL----DRANLTGANLSETDLT------- 96
Query: 151 YLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 210
+A +AN GADLS ++R L + +LT A L L ++L A + D +A
Sbjct: 97 ---EAALTEANLAGADLSGANLERSFLRDVDLTGANLKGANLAWANLTAANLTDVDLEEA 153
>sp|P81760|TL17_ARATH Thylakoid lumenal 17.4 kDa protein, chloroplastic OS=Arabidopsis
thaliana GN=At5g53490 PE=1 SV=2
Length = 236
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 132 FTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTV 191
++A M + F G+ + KA A +A+F G + ++ ++DR+ ++NL AV TV
Sbjct: 131 LSAALMVGAKFDGADMTEVVMSKAYAVEASFKGVNFTNAVIDRVNFGKSNLKGAVFRNTV 190
Query: 192 LTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGC 241
L+ S A +E F D +I Q +C+ N R LGC
Sbjct: 191 LSGSTFEEANLEDVVFEDTIIGYIDLQKICR-----NESINEEGRLVLGC 235
>sp|Q52118|YMO3_ERWST Uncharacterized protein in mobD 3'region OS=Erwinia stewartii PE=4
SV=1
Length = 295
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 61/105 (58%), Gaps = 6/105 (5%)
Query: 109 SAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKA---VAY--KANF 162
S A +ADL++A N A+ T+A++ ++D +GA L A +AY +A+
Sbjct: 170 SNANLSNADLKRADLSNANLSGADLTNANLNQTDLPNVNLSGANLAHANLTMAYLSEADL 229
Query: 163 TGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADF 207
+ A+LS+ + R L++ANL++A L L R+DL AI++GA+
Sbjct: 230 SNANLSNADLKRADLSDANLSDANLTNVDLKRADLSNAILKGANL 274
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 11/116 (9%)
Query: 109 SAAQFGSADLRKAVHVKENF------RANFTSADMRESDFSGSKFNGAYLEKAVAYK--- 159
S A ADL A N AN T A + E+D S + +GA L A +
Sbjct: 85 SDANLSDADLSDANLSDANLSGANLAHANLTMAYLSEADLSNANLSGADLTNANLNQTDL 144
Query: 160 --ANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVID 213
N +GA+L+ + L+EA+L+NA L L R+DL A + GAD ++A ++
Sbjct: 145 PNVNLSGANLAHANLTMAYLSEADLSNANLSNADLKRADLSNANLSGADLTNANLN 200
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 10/92 (10%)
Query: 129 RANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRM----------VLN 178
AN T A + E+D S + + A L++A AN +GADL++ +++ L
Sbjct: 156 HANLTMAYLSEADLSNANLSNADLKRADLSNANLSGADLTNANLNQTDLPNVNLSGANLA 215
Query: 179 EANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 210
ANLT A L L+ ++L A ++ AD SDA
Sbjct: 216 HANLTMAYLSEADLSNANLSNADLKRADLSDA 247
Score = 38.5 bits (88), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 136 DMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRS 195
+++ + S + GAYL A N + ADLSD + L+ ANL +A L L+ +
Sbjct: 68 NLKGVNLSDTDLKGAYLSDA-----NLSDADLSDANLSDANLSGANLAHANLTMAYLSEA 122
Query: 196 DLGGAIIEGADFSDAVID 213
DL A + GAD ++A ++
Sbjct: 123 DLSNANLSGADLTNANLN 140
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 130 ANFTSADMRESDFSGSKFNGAYLEKA---VAY--KANFTGADLSDTLMDRMVLNEANLTN 184
A+ T+A++ ++D +GA L A +AY +A+ + A+LS+ + R L+ ANL+
Sbjct: 132 ADLTNANLNQTDLPNVNLSGANLAHANLTMAYLSEADLSNANLSNADLKRADLSNANLSG 191
Query: 185 AVLVRTVLTRSDLGGAIIEGADFSDAVIDLA 215
A L L ++DL + GA+ + A + +A
Sbjct: 192 ADLTNANLNQTDLPNVNLSGANLAHANLTMA 222
>sp|P73709|Y1819_SYNY3 Uncharacterized protein slr1819 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1819 PE=4 SV=1
Length = 331
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 122 VHVKENFRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEAN 181
HV N R N T S+ S ++ N A L +A KAN A+L + R L EAN
Sbjct: 244 THVNLN-RTNLTG-----SNLSFTRMNSADLSRANLTKANLQEAELIEAFFARANLTEAN 297
Query: 182 LTNAVLVRTVLTRSDLGGAIIEGADFSDAVI 212
NA LVR L +++ GA +GA D +
Sbjct: 298 FINANLVRADLMSANMVGADFQGATMPDGQV 328
Score = 39.3 bits (90), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 22/120 (18%)
Query: 100 ETRGEFGIGSAAQFGSADLRKA--------------VHVKENFRANFTSADMRESDFSGS 145
E +G + AA G ADL+ A ++KE AN D+R++D S +
Sbjct: 140 EKKGYYTNLQAAILGRADLQGANMKGVDLSRADLSYANLKE---ANLRDVDLRKADLSYA 196
Query: 146 KFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLT-----NAVLVRTVLTRSDLGGA 200
GA L A A GADL + + R ++EA +T A++ L R++L G+
Sbjct: 197 NLKGALLTDANLSGAKLNGADLQNANLMRAKISEAEMTAVNCQGAIMTHVNLNRTNLTGS 256
Score = 38.5 bits (88), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%)
Query: 132 FTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTV 191
T ++ ++ +GS + + A +AN T A+L + + ANLT A +
Sbjct: 243 MTHVNLNRTNLTGSNLSFTRMNSADLSRANLTKANLQEAELIEAFFARANLTEANFINAN 302
Query: 192 LTRSDLGGAIIEGADFSDAVI 212
L R+DL A + GADF A +
Sbjct: 303 LVRADLMSANMVGADFQGATM 323
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 9/107 (8%)
Query: 111 AQFGSADLRKAVHVKENFRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLS-- 168
A DLRKA + AN A + +++ SG+K NGA L+ A +A + A+++
Sbjct: 181 ANLRDVDLRKA----DLSYANLKGALLTDANLSGAKLNGADLQNANLMRAKISEAEMTAV 236
Query: 169 ---DTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVI 212
+M + LN NLT + L T + +DL A + A+ +A +
Sbjct: 237 NCQGAIMTHVNLNRTNLTGSNLSFTRMNSADLSRANLTKANLQEAEL 283
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 139 ESDFSGSKFNGAYLEKA-----VAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLT 193
E+ F+G K G LE A V +A+ GA+L ++R L +ANL A L L
Sbjct: 14 ETLFTGLKLPGINLEAADLIGIVLNEADLRGANLLFCYLNRANLGQANLVAANLSGASLN 73
Query: 194 RSDLGGAIIEGADFSDAVI 212
++DL GA + A+F A++
Sbjct: 74 QADLAGADLRSANFHGAML 92
Score = 34.7 bits (78), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%)
Query: 129 RANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLV 188
RAN A++ ++ SG+ N A L A ANF GA L ++ + A L + L+
Sbjct: 54 RANLGQANLVAANLSGASLNQADLAGADLRSANFHGAMLQGAILRDSDMTLATLQDTNLI 113
Query: 189 RTVLTRSDLGGAIIEGA 205
L +DL GA + GA
Sbjct: 114 GADLRGADLSGATLTGA 130
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 59/138 (42%), Gaps = 30/138 (21%)
Query: 98 EAETRGE---FGIGSAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLE 153
EA+ RG F + A G A+L V N A+ AD+ +D + F+GA L+
Sbjct: 39 EADLRGANLLFCYLNRANLGQANL-----VAANLSGASLNQADLAGADLRSANFHGAMLQ 93
Query: 154 KAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLV---------------------RTVL 192
A+ ++ T A L DT + L A+L+ A L +L
Sbjct: 94 GAILRDSDMTLATLQDTNLIGADLRGADLSGATLTGACLRGANMRQEKKGYYTNLQAAIL 153
Query: 193 TRSDLGGAIIEGADFSDA 210
R+DL GA ++G D S A
Sbjct: 154 GRADLQGANMKGVDLSRA 171
>sp|Q8ZMM8|PIPB2_SALTY Secreted effector protein pipB2 OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=pipB2 PE=1 SV=1
Length = 350
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 114 GSADLRKAVHVKENFRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMD 173
G +L+ AV AN TS ++ ++D SG+ GA L A ANF GA+LS T
Sbjct: 150 GGMNLKGAVLTG----ANLTSENLCDADLSGANLEGAVLFMADCEGANFKGANLSGT--- 202
Query: 174 RMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVI 212
L ++N NA L +++ + L A + GA+ A +
Sbjct: 203 --SLGDSNFKNACLEDSIMCGATLDHANLTGANLQHASL 239
Score = 31.6 bits (70), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 129 RANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDT-----LMDRMVLNEANLT 183
A+ M E + SG+ + L A +A+ +GA L +M+ VL ANL
Sbjct: 236 HASLLGCSMIECNCSGANMDHTNLSGATLIRADMSGATLQGATIMAAIMEGAVLTRANLR 295
Query: 184 NAVLVRTVLTRSDLGGAIIEGADFSDAVI-DLAQKQA 219
A + T L +DL A + F D + DL + A
Sbjct: 296 KASFISTNLDGADLAEANLNNTCFKDCTLTDLRTEDA 332
>sp|P74221|Y1152_SYNY3 Uncharacterized protein slr1152 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1152 PE=4 SV=1
Length = 331
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 123 HVKENFRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANL 182
H + N+ A+ T A + ++D S + A L A A K NF GA LS L ANL
Sbjct: 89 HCQMNW-ADLTYAKLNQADLSHADLTKASLYGAFAVKTNFKGAKLSGA-----TLAHANL 142
Query: 183 TNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALC 221
A L +T LT ++L A + A+F A A Q C
Sbjct: 143 RGANLEQTNLTGANLFAANLREANFQKADFSWANLQEAC 181
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 16/118 (13%)
Query: 109 SAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 167
S A A+LR A + N AN +A++RE++F + F+ A L++A AN A L
Sbjct: 133 SGATLAHANLRGANLEQTNLTGANLFAANLREANFQKADFSWANLQEACLSLANLRDARL 192
Query: 168 SDTLMDRMVLNE---------------ANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 210
T + R + E A LT + L T L+ S L GA + GAD + A
Sbjct: 193 WATDLRRAFMKEMDLSALSLHGLAMDGAKLTGSCLRDTNLSHSSLRGANLRGADLTGA 250
Score = 35.0 bits (79), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 55/130 (42%), Gaps = 17/130 (13%)
Query: 74 TALAAAVVASCSSNISAL--ADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFR-- 129
T L A + C N + L A LN+ + S A A L A VK NF+
Sbjct: 80 TFLTKARLGHCQMNWADLTYAKLNQADL---------SHADLTKASLYGAFAVKTNFKGA 130
Query: 130 ----ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNA 185
A A++R ++ + GA L A +ANF AD S + L+ ANL +A
Sbjct: 131 KLSGATLAHANLRGANLEQTNLTGANLFAANLREANFQKADFSWANLQEACLSLANLRDA 190
Query: 186 VLVRTVLTRS 195
L T L R+
Sbjct: 191 RLWATDLRRA 200
Score = 34.7 bits (78), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 47/107 (43%), Gaps = 11/107 (10%)
Query: 111 AQFGSADLRKAVHVKENFR------ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTG 164
A F A+L++A N R + A M+E D S +G ++ A TG
Sbjct: 170 ADFSWANLQEACLSLANLRDARLWATDLRRAFMKEMDLSALSLHGLAMDGA-----KLTG 224
Query: 165 ADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAV 211
+ L DT + L ANL A L LT DL GA + GA+ + V
Sbjct: 225 SCLRDTNLSHSSLRGANLRGADLTGANLTGVDLTGADLMGANLTQVV 271
>sp|P74297|SPKB_SYNY3 Serine/threonine-protein kinase B OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=spkB PE=1 SV=1
Length = 574
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 71 FVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFR- 129
V LA A V + + L + N +AE + A FG A L+ + N
Sbjct: 456 LVGIVLAKAFVPGINCYQANLTNANFEQAEL-------TRADFGKARLKNVIFKGANLSD 508
Query: 130 ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 167
A F AD+R +D G+ NG + A ANF+GADL
Sbjct: 509 AYFGYADLRGADLRGANLNGVNFKYANLQGANFSGADL 546
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 128 FRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVL 187
++AN T+A+ +++ + + F A L+ + F GA+LSD L A+L A L
Sbjct: 472 YQANLTNANFEQAELTRADFGKARLKNVI-----FKGANLSDAYFGYADLRGADLRGANL 526
Query: 188 VRTVLTRSDLGGAIIEGADFSDAVIDLAQ 216
++L GA GAD A + Q
Sbjct: 527 NGVNFKYANLQGANFSGADLGSAKVSPEQ 555
Score = 31.2 bits (69), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 139 ESDFSGSKFNGAYLEKAVA-----YKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLT 193
+ DF+ G L KA Y+AN T A+ + R +A L N + L+
Sbjct: 448 KRDFADQNLVGIVLAKAFVPGINCYQANLTNANFEQAELTRADFGKARLKNVIFKGANLS 507
Query: 194 RSDLGGAIIEGADFSDAVIDLAQKQALCKYAN 225
+ G A + GAD A ++ KYAN
Sbjct: 508 DAYFGYADLRGADLRGANLNGVN----FKYAN 535
>sp|Q57KZ6|PIPB2_SALCH Secreted effector protein pipB2 OS=Salmonella choleraesuis (strain
SC-B67) GN=pipB2 PE=3 SV=1
Length = 350
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 114 GSADLRKAVHVKENFRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMD 173
G +L+ AV AN T+ ++ ++D SG+ GA L A ANF GA+LS T
Sbjct: 150 GGMNLKGAVLTG----ANLTAENLCDADLSGANLEGAVLFMADCEGANFKGANLSGT--- 202
Query: 174 RMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 210
L ++N NA L +++ + L A + GA+ A
Sbjct: 203 --SLGDSNFKNACLEDSIMCGATLDHANLTGANLQHA 237
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 27/65 (41%)
Query: 130 ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVR 189
A ADM + G+ A +E AV +AN A T +D L EANL N
Sbjct: 262 ATLIRADMSGATLQGATIMAAIMEDAVLTRANLRKASFISTNLDGADLAEANLNNTCFKD 321
Query: 190 TVLTR 194
LT
Sbjct: 322 CTLTH 326
Score = 31.6 bits (70), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 129 RANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDT-----LMDRMVLNEANLT 183
A+ M E + SG+ + L A +A+ +GA L +M+ VL ANL
Sbjct: 236 HASLLGCSMIECNCSGANMDHTNLSGATLIRADMSGATLQGATIMAAIMEDAVLTRANLR 295
Query: 184 NAVLVRTVLTRSDLGGAIIEGADFSDAVI 212
A + T L +DL A + F D +
Sbjct: 296 KASFISTNLDGADLAEANLNNTCFKDCTL 324
>sp|Q9SE95|FIP2_ARATH FH protein interacting protein FIP2 OS=Arabidopsis thaliana GN=FIP2
PE=1 SV=1
Length = 298
Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 112 QFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDT 170
+F SA+LR A+ N + AN A + F G+ A+L+ A AN GA+L
Sbjct: 192 EFTSANLRGALLAGTNLQSANLQDACLVGCSFCGADLRTAHLQNADLTNANLEGANLEGA 251
Query: 171 LMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 210
+ L+ AN A L R L +L A +EGA+ A
Sbjct: 252 NLKGAKLSNANFKGANLQRAYLRHVNLREAHMEGANLGGA 291
Score = 38.1 bits (87), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 129 RANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLV 188
R N A R +D GS F+ A L + AN GA L+ T L ANL +A LV
Sbjct: 165 RTNLQCAKFRNADAEGSIFHNAILRECEFTSANLRGALLAGT-----NLQSANLQDACLV 219
Query: 189 RTVLTRSDLGGAIIEGADFSDAVID 213
+DL A ++ AD ++A ++
Sbjct: 220 GCSFCGADLRTAHLQNADLTNANLE 244
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 111 AQFGSADLRKAVHVKENFRA-NFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 169
A+F +AD ++ R FTSA++R + +G+ A L+ A +F GADL
Sbjct: 171 AKFRNADAEGSIFHNAILRECEFTSANLRGALLAGTNLQSANLQDACLVGCSFCGADLRT 230
Query: 170 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 210
L A+LTNA L L ++L GA + A+F A
Sbjct: 231 A-----HLQNADLTNANLEGANLEGANLKGAKLSNANFKGA 266
>sp|Q8Z4G9|PIPB2_SALTI Secreted effector protein pipB2 OS=Salmonella typhi GN=pipB2 PE=3
SV=1
Length = 350
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Query: 114 GSADLRKAVHVKENFRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMD 173
G +L+ AV AN T+ ++ ++D SG+ GA L A ANF GA+LS
Sbjct: 150 GGMNLKGAVLTG----ANLTAENLCDADLSGADLEGAILFMADCDGANFKGANLSGA--- 202
Query: 174 RMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADF 207
L ++NLTNA L +++ + L A + GA+
Sbjct: 203 --SLGDSNLTNACLEDSIMCGATLDRANLTGANL 234
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 16/124 (12%)
Query: 111 AQFGSADLRKAVHVKE-----NFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTG 164
A ADL A+ NF+ AN + A + +S+ + + + + A +AN TG
Sbjct: 172 ADLSGADLEGAILFMADCDGANFKGANLSGASLGDSNLTNACLEDSIMCGATLDRANLTG 231
Query: 165 ADLSDT--LMDRMV--------LNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDL 214
A+L T L MV ++ AN++ + L+R ++ + L GA I A AV+
Sbjct: 232 ANLQHTSLLGCSMVECNCSGANMDHANVSGSTLIRADMSGATLKGATIMAAIMEGAVLTR 291
Query: 215 AQKQ 218
A Q
Sbjct: 292 ANLQ 295
Score = 32.3 bits (72), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%)
Query: 135 ADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLT 193
ADM + G+ A +E AV +AN A + T +D L+EANL N LT
Sbjct: 267 ADMSGATLKGATIMAAIMEGAVLTRANLQKASFTATNLDGADLSEANLRNTSFKDCTLT 325
Score = 31.2 bits (69), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 16/107 (14%)
Query: 129 RANFTSAD----------MRESDFSGSKFNGAYLEKAVAYKANFTGADLSDT-----LMD 173
RAN T A+ M E + SG+ + A + + +A+ +GA L +M+
Sbjct: 226 RANLTGANLQHTSLLGCSMVECNCSGANMDHANVSGSTLIRADMSGATLKGATIMAAIME 285
Query: 174 RMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVI-DLAQKQA 219
VL ANL A T L +DL A + F D + DL + A
Sbjct: 286 GAVLTRANLQKASFTATNLDGADLSEANLRNTSFKDCTLTDLRTEDA 332
>sp|Q5PEX4|PIPB2_SALPA Secreted effector protein pipB2 OS=Salmonella paratyphi A (strain
ATCC 9150 / SARB42) GN=pipB2 PE=3 SV=1
Length = 350
Score = 39.7 bits (91), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 114 GSADLRKAVHVKENFRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMD 173
G +L+ AV AN T+ ++ ++D SG+ GA L A ANF GA+LS T
Sbjct: 150 GGMNLKGAVLTG----ANLTAENLCDADLSGANLEGAVLFMADCEGANFKGANLSGT--- 202
Query: 174 RMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 210
L ++N NA L ++ + L A + GA+ A
Sbjct: 203 --SLGDSNFKNACLEDGIMCGATLDHANLTGANLQHA 237
Score = 35.0 bits (79), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 16/118 (13%)
Query: 111 AQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAY-----KANFTG 164
A A+L AV + ANF A++ + S F A LE + AN TG
Sbjct: 172 ADLSGANLEGAVLFMADCEGANFKGANLSGTSLGDSNFKNACLEDGIMCGATLDHANLTG 231
Query: 165 ADLSDT--LMDRMV--------LNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVI 212
A+L L M+ ++ NL+ A L+R ++ + L GA I A DAV+
Sbjct: 232 ANLQHASLLGCSMIECNCSGANMDHTNLSGATLIRADMSGATLQGATIMAAIMEDAVL 289
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 27/65 (41%)
Query: 130 ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVR 189
A ADM + G+ A +E AV +AN A T +D L EANL N
Sbjct: 262 ATLIRADMSGATLQGATIMAAIMEDAVLTRANLRKASFISTNLDGADLAEANLNNTCFKD 321
Query: 190 TVLTR 194
LT
Sbjct: 322 CTLTH 326
Score = 31.6 bits (70), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 129 RANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDT-----LMDRMVLNEANLT 183
A+ M E + SG+ + L A +A+ +GA L +M+ VL ANL
Sbjct: 236 HASLLGCSMIECNCSGANMDHTNLSGATLIRADMSGATLQGATIMAAIMEDAVLTRANLR 295
Query: 184 NAVLVRTVLTRSDLGGAIIEGADFSDAVI 212
A + T L +DL A + F D +
Sbjct: 296 KASFISTNLDGADLAEANLNNTCFKDCTL 324
>sp|Q57756|Y308_METJA Uncharacterized protein MJ0308 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0308 PE=4 SV=1
Length = 233
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 20/113 (17%)
Query: 158 YKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQK 217
Y + D +D + D +V L LV+ +L GG ADFS
Sbjct: 121 YATVYAPLDETDFIPDSIVFIGEPLYALRLVQAILYHK--GGRF--QADFSGI------- 169
Query: 218 QALCKYANGTNPITGVSTRK----SLGCGNSRRNAYGSPSSPLLSAPPQKLLD 266
Q+LC + + V TRK +LGC SR+ A P +++ PP+KL D
Sbjct: 170 QSLC-----ADAVAAVYTRKAPNMTLGCNGSRKYAGIKPEEVVVAFPPEKLKD 217
>sp|P73063|Y1851_SYNY3 Uncharacterized protein slr1851 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1851 PE=4 SV=1
Length = 162
Score = 36.6 bits (83), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 111 AQFGSADLRKAVHVKENF-RANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 169
AQ SA L+ A N AD+ +D SG+ GA L A A GADL
Sbjct: 53 AQLDSATLKNANLALANMTEVCLIYADLSNADLSGANLVGADLTNADLSGAKLGGADLRK 112
Query: 170 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSD-AVIDL 214
+ L A+L L+ LT +D A + GA SD AVI++
Sbjct: 113 ANLSEASLRGADLRGVNLIEANLTNTDFSEADLTGAYISDGAVINV 158
Score = 34.7 bits (78), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%)
Query: 130 ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVR 189
A+ A + D G+ A L+ A AN A++++ + L+ A+L+ A LV
Sbjct: 33 ASLIGAQLIFVDLGGANLTRAQLDSATLKNANLALANMTEVCLIYADLSNADLSGANLVG 92
Query: 190 TVLTRSDLGGAIIEGADFSDA 210
LT +DL GA + GAD A
Sbjct: 93 ADLTNADLSGAKLGGADLRKA 113
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 109 SAAQFGSADLRKAVHVKENFR------ANFTSADMRESDFSGSKFNGAYL 152
S A+ G ADLRKA + + R N A++ +DFS + GAY+
Sbjct: 101 SGAKLGGADLRKANLSEASLRGADLRGVNLIEANLTNTDFSEADLTGAYI 150
>sp|P85304|TL18_SPIOL Thylakoid lumenal 18.3 kDa protein (Fragment) OS=Spinacia oleracea
PE=1 SV=1
Length = 18
Score = 34.3 bits (77), Expect = 0.91, Method: Composition-based stats.
Identities = 15/18 (83%), Positives = 16/18 (88%)
Query: 93 DLNKYEAETRGEFGIGSA 110
DLNK+EAE RGEFGI SA
Sbjct: 1 DLNKFEAEMRGEFGIXSA 18
>sp|Q7L273|KCTD9_HUMAN BTB/POZ domain-containing protein KCTD9 OS=Homo sapiens GN=KCTD9
PE=2 SV=1
Length = 389
Score = 34.3 bits (77), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 161 NFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQA- 219
NF+GADLS R+ L N A L R L ++L A +E AD S +V+D A Q
Sbjct: 224 NFSGADLS-----RLDLRYINFKMANLSRCNLAHANLCCANLERADLSGSVLDCANLQGV 278
Query: 220 --LCKYANG 226
LC A G
Sbjct: 279 KMLCSNAEG 287
>sp|Q58EE9|GFAP_DANRE Glial fibrillary acidic protein OS=Danio rerio GN=gfap PE=1 SV=2
Length = 444
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 161 NFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAII 202
NFT DT MD + EA++ +++VRTV TR G II
Sbjct: 395 NFTNLQFRDTSMDTKLTPEAHVKRSIVVRTVETRD---GEII 433
>sp|Q8ZQ59|PIPB_SALTY Secreted effector protein PipB OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=pipB PE=2 SV=1
Length = 291
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%)
Query: 133 TSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVL 192
++AD RE+ S GA L A + N G++++ + L AN++ L +L
Sbjct: 177 SNADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNLTAAIL 236
Query: 193 TRSDLGGAIIEGADFSDAVIDLAQ 216
SDL + GA + LA+
Sbjct: 237 FGSDLTDTKLNGAKLDKIALTLAK 260
>sp|P32704|YJCF_ECOLI Uncharacterized protein YjcF OS=Escherichia coli (strain K12)
GN=yjcF PE=4 SV=1
Length = 430
Score = 31.6 bits (70), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 136 DMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANL 182
D+ S+F+G + A + YK NF A + L D +L+++N
Sbjct: 163 DLSNSNFAGCRLQNAIFQDCNMYKTNFNFAIMEKILFDNCILDDSNF 209
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.128 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,318,335
Number of Sequences: 539616
Number of extensions: 3942589
Number of successful extensions: 9698
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 9430
Number of HSP's gapped (non-prelim): 138
length of query: 281
length of database: 191,569,459
effective HSP length: 116
effective length of query: 165
effective length of database: 128,974,003
effective search space: 21280710495
effective search space used: 21280710495
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)