Query 023545
Match_columns 281
No_of_seqs 349 out of 1515
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 04:52:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023545.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023545hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15197 secreted effector pro 99.7 1E-17 2.2E-22 155.5 2.5 108 109-216 157-266 (291)
2 PRK15197 secreted effector pro 99.7 1.8E-17 3.9E-22 153.8 2.5 95 110-204 163-258 (291)
3 PRK15377 E3 ubiquitin-protein 99.6 1.1E-15 2.3E-20 155.3 5.8 82 109-190 193-276 (782)
4 PRK15196 secreted effector pro 99.6 6.4E-16 1.4E-20 147.3 3.5 35 109-143 190-225 (350)
5 KOG1665 AFH1-interacting prote 99.6 6.7E-16 1.4E-20 137.2 1.2 57 162-218 218-274 (302)
6 KOG1665 AFH1-interacting prote 99.6 9.6E-16 2.1E-20 136.2 2.0 28 109-136 139-167 (302)
7 PRK09718 hypothetical protein; 99.5 8.4E-15 1.8E-19 142.6 4.5 48 109-156 98-146 (512)
8 PRK15377 E3 ubiquitin-protein 99.5 1.1E-14 2.4E-19 147.9 4.5 104 108-211 187-294 (782)
9 PRK09718 hypothetical protein; 99.5 9.5E-15 2E-19 142.2 3.4 37 109-145 103-140 (512)
10 PF13599 Pentapeptide_4: Penta 99.3 2.3E-12 5.1E-17 95.6 5.0 61 137-197 8-69 (78)
11 PF13599 Pentapeptide_4: Penta 99.3 3E-12 6.6E-17 95.0 5.2 75 136-211 2-77 (78)
12 PF08139 LPAM_1: Prokaryotic m 26.4 75 0.0016 19.0 2.3 18 65-82 4-21 (25)
13 PF12541 DUF3737: Protein of u 24.8 83 0.0018 29.5 3.4 16 225-240 244-259 (277)
No 1
>PRK15197 secreted effector protein PipB; Provisional
Probab=99.68 E-value=1e-17 Score=155.50 Aligned_cols=108 Identities=20% Similarity=0.268 Sum_probs=60.4
Q ss_pred CCceEccCcccccccccceeE-EEeCcceeeceeeccccccceeeeccccccceecccccccceecceeeccccccccee
Q 023545 109 SAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVL 187 (281)
Q Consensus 109 sg~~f~~adL~~~~F~~~~l~-a~f~~a~L~~a~f~~a~L~~a~l~~a~f~~a~l~gAdLs~a~f~~a~f~~A~L~~A~L 187 (281)
.+++|.+++|++.+|.+++|. ++|++++|++++|.+++|.+++|.+++|.+++|.+++|.+++|.+++|.+++|.+|.|
T Consensus 157 ~g~DLs~adL~gadLsgadLs~A~F~gAnL~~a~LsgA~L~~AnL~~A~f~~a~f~~Anf~~AdL~~A~Ls~A~L~gA~L 236 (291)
T PRK15197 157 RGVNLAHKDFQGEDLSDIDASNADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNLTAAIL 236 (291)
T ss_pred CCCCCCCCCCCCCcCCCCcccCccccccCcCCccccccccCCcEecccchhhhhhhhceeccCcCceeecCccCcCCCEe
Confidence 455555555555555555555 5555555555555555555555555555555555555555555555555555555555
Q ss_pred cCccccceeecCceecCccccCc-eeCHHH
Q 023545 188 VRTVLTRSDLGGAIIEGADFSDA-VIDLAQ 216 (281)
Q Consensus 188 ~~a~f~~adL~gA~l~gAdf~~A-~l~~~q 216 (281)
.+++|++++|.+++|.+++|.++ .|.+.+
T Consensus 237 ~gAdLs~A~L~gAnL~~A~L~~a~~L~gad 266 (291)
T PRK15197 237 FGSDLTDTKLNGAKLDKIALTLAKALTGAD 266 (291)
T ss_pred CCCCcCCCCCCCCCCCccccccCCCCCCCc
Confidence 55555555555555555555555 444443
No 2
>PRK15197 secreted effector protein PipB; Provisional
Probab=99.67 E-value=1.8e-17 Score=153.84 Aligned_cols=95 Identities=22% Similarity=0.260 Sum_probs=36.5
Q ss_pred CceEccCcccccccccceeE-EEeCcceeeceeeccccccceeeeccccccceecccccccceecceeecccccccceec
Q 023545 110 AAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLV 188 (281)
Q Consensus 110 g~~f~~adL~~~~F~~~~l~-a~f~~a~L~~a~f~~a~L~~a~l~~a~f~~a~l~gAdLs~a~f~~a~f~~A~L~~A~L~ 188 (281)
+++|.+++|++++|.+++|+ ++|++++|.+++|.+++|.+++|.+++|.+++|.+++|++++|.+++|.+|+|.+++|.
T Consensus 163 ~adL~gadLsgadLs~A~F~gAnL~~a~LsgA~L~~AnL~~A~f~~a~f~~Anf~~AdL~~A~Ls~A~L~gA~L~gAdLs 242 (291)
T PRK15197 163 HKDFQGEDLSDIDASNADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNLTAAILFGSDLT 242 (291)
T ss_pred CCCCCCCcCCCCcccCccccccCcCCccccccccCCcEecccchhhhhhhhceeccCcCceeecCccCcCCCEeCCCCcC
Confidence 33444444444444444444 44444444443333333333333333333333333333333333333333333333333
Q ss_pred CccccceeecCceecC
Q 023545 189 RTVLTRSDLGGAIIEG 204 (281)
Q Consensus 189 ~a~f~~adL~gA~l~g 204 (281)
+++|.+++|.+++|.+
T Consensus 243 ~A~L~gAnL~~A~L~~ 258 (291)
T PRK15197 243 DTKLNGAKLDKIALTL 258 (291)
T ss_pred CCCCCCCCCCcccccc
Confidence 3333333333333333
No 3
>PRK15377 E3 ubiquitin-protein ligase SopA; Provisional
Probab=99.59 E-value=1.1e-15 Score=155.26 Aligned_cols=82 Identities=23% Similarity=0.297 Sum_probs=39.9
Q ss_pred CCceEccCcccccccccceeE-EEeCcce-eeceeeccccccceeeeccccccceecccccccceecceeecccccccce
Q 023545 109 SAAQFGSADLRKAVHVKENFR-ANFTSAD-MRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAV 186 (281)
Q Consensus 109 sg~~f~~adL~~~~F~~~~l~-a~f~~a~-L~~a~f~~a~L~~a~l~~a~f~~a~l~gAdLs~a~f~~a~f~~A~L~~A~ 186 (281)
++++|.+++|++++|.+++|. ++|.+++ |++|+|.+++|.+++|.+++|.+|+|.+++|+++.|.+++|.+|+|++++
T Consensus 193 sg~DLSGADFsg~DLSgAnFsgA~Lr~AdiL~gAdLsgAnLs~AdLs~AnFsgcnLs~AnLs~A~L~~AdFsgAdLkgAD 272 (782)
T PRK15377 193 ADRDFSNADFRNINFSKINPSGFMLRDGDIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEAS 272 (782)
T ss_pred CCCcCCCCCCCCCcccCCcchhhcccCCCCcCCCccCCeEcccchhhhhhhheeeecccccCcCEeCCCEecCCCCCCCC
Confidence 344444444444444444444 4444444 44444444444444455555555555555555555555555555555554
Q ss_pred ecCc
Q 023545 187 LVRT 190 (281)
Q Consensus 187 L~~a 190 (281)
|.++
T Consensus 273 LSgS 276 (782)
T PRK15377 273 LKYS 276 (782)
T ss_pred CCCC
Confidence 4444
No 4
>PRK15196 secreted effector protein PipB2; Provisional
Probab=99.58 E-value=6.4e-16 Score=147.28 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=15.6
Q ss_pred CCceEccCcccccccccceeE-EEeCcceeeceeec
Q 023545 109 SAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFS 143 (281)
Q Consensus 109 sg~~f~~adL~~~~F~~~~l~-a~f~~a~L~~a~f~ 143 (281)
.+++|++++|.+++|.+++|+ ++|.+++|.+++|.
T Consensus 190 ~~a~L~~AnLs~a~f~~a~L~~A~L~~a~l~~A~f~ 225 (350)
T PRK15196 190 EGANFKGANLSGTSLGDSNFKNACLEDSIMCGATLD 225 (350)
T ss_pred cCCeecCcchhhhhhccCccccceecccccceeEcc
Confidence 445555555544444444444 44444433333333
No 5
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=99.56 E-value=6.7e-16 Score=137.23 Aligned_cols=57 Identities=30% Similarity=0.383 Sum_probs=25.6
Q ss_pred ecccccccceecceeecccccccceecCccccceeecCceecCccccCceeCHHHHH
Q 023545 162 FTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQ 218 (281)
Q Consensus 162 l~gAdLs~a~f~~a~f~~A~L~~A~L~~a~f~~adL~gA~l~gAdf~~A~l~~~q~~ 218 (281)
|+||+|.++.|.++++.+++|+.|+|+++.+.+++|++|+|.|+|+++++|++++++
T Consensus 218 LeganLkG~~~egs~m~ginLrvA~Lknanle~~NLrgA~LaGadLencnlsG~dLQ 274 (302)
T KOG1665|consen 218 LEGANLKGADMEGSQMTGINLRVATLKNANLENCNLRGANLAGADLENCNLSGADLQ 274 (302)
T ss_pred ccccccccccccccccccceeEeccccccccccCccccccccCCccccCCCCCcchh
Confidence 333333334444444444444444444444444444444444555555555554443
No 6
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=99.56 E-value=9.6e-16 Score=136.23 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=11.5
Q ss_pred CCceEccCcccccccccceeE-EEeCcce
Q 023545 109 SAAQFGSADLRKAVHVKENFR-ANFTSAD 136 (281)
Q Consensus 109 sg~~f~~adL~~~~F~~~~l~-a~f~~a~ 136 (281)
+|+|++..||+..+|+-++++ ++|.+++
T Consensus 139 SGaDLskLDlr~inFkyA~ls~c~lshtN 167 (302)
T KOG1665|consen 139 SGADLSKLDLRLINFKYANLSNCNLSHTN 167 (302)
T ss_pred cccchhhcccccccceehhhccccccccc
Confidence 444444444444444443333 3333333
No 7
>PRK09718 hypothetical protein; Validated
Probab=99.51 E-value=8.4e-15 Score=142.55 Aligned_cols=48 Identities=10% Similarity=0.309 Sum_probs=30.1
Q ss_pred CCceEccCcccccccccceeE-EEeCcceeeceeeccccccceeeeccc
Q 023545 109 SAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAV 156 (281)
Q Consensus 109 sg~~f~~adL~~~~F~~~~l~-a~f~~a~L~~a~f~~a~L~~a~l~~a~ 156 (281)
.+|+|++|+|++|+|.+++|. +.|.++.|.+|+|.+|+|.++.|.++.
T Consensus 98 egCdFsgCdFS~csFs~~dLqDV~FEcA~Lg~CNFsgAdLsgA~FarA~ 146 (512)
T PRK09718 98 TSCHFKGDVISKVSFLSSNLQHVTFECKEIGDCNFTTAIVDNVIFKCRR 146 (512)
T ss_pred cccEecCCEEeeceecCCEEEeEEEeccccCccccccCCCCCCccccce
Confidence 566666666666666667776 666666666666666665554333333
No 8
>PRK15377 E3 ubiquitin-protein ligase SopA; Provisional
Probab=99.50 E-value=1.1e-14 Score=147.92 Aligned_cols=104 Identities=14% Similarity=0.225 Sum_probs=81.7
Q ss_pred CCCceEccCcccccccccceeE-EEeCcceeecee-eccccccceeeeccccccceecccccccceecceeecccccccc
Q 023545 108 GSAAQFGSADLRKAVHVKENFR-ANFTSADMRESD-FSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNA 185 (281)
Q Consensus 108 ~sg~~f~~adL~~~~F~~~~l~-a~f~~a~L~~a~-f~~a~L~~a~l~~a~f~~a~l~gAdLs~a~f~~a~f~~A~L~~A 185 (281)
.++++|.++||++++|.+++|. ++|.+++|++++ |.+|+|.+++|.+|+|.+++|.+|+|.+++|.+++|.+++|.+|
T Consensus 187 Le~vdFsg~DLSGADFsg~DLSgAnFsgA~Lr~AdiL~gAdLsgAnLs~AdLs~AnFsgcnLs~AnLs~A~L~~AdFsgA 266 (782)
T PRK15377 187 GEELTYADRDFSNADFRNINFSKINPSGFMLRDGDIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNS 266 (782)
T ss_pred CccCCcCCCcCCCCCCCCCcccCCcchhhcccCCCCcCCCccCCeEcccchhhhhhhheeeecccccCcCEeCCCEecCC
Confidence 4577888888888888888888 888888888888 88888888888888888888888888888888888888888888
Q ss_pred eecCccccceee--cCceecCccccCce
Q 023545 186 VLVRTVLTRSDL--GGAIIEGADFSDAV 211 (281)
Q Consensus 186 ~L~~a~f~~adL--~gA~l~gAdf~~A~ 211 (281)
+|.+++|.+++| .++++.+++|++|+
T Consensus 267 dLkgADLSgS~lt~~~inLs~A~LkGA~ 294 (782)
T PRK15377 267 DMNEASLKYSITTQQQPSFIETTLKNTI 294 (782)
T ss_pred CCCCCCCCCCcccccccccchhhcCCcE
Confidence 888888888733 45555555655555
No 9
>PRK09718 hypothetical protein; Validated
Probab=99.49 E-value=9.5e-15 Score=142.22 Aligned_cols=37 Identities=3% Similarity=0.048 Sum_probs=16.7
Q ss_pred CCceEccCcccccccccceeE-EEeCcceeeceeeccc
Q 023545 109 SAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGS 145 (281)
Q Consensus 109 sg~~f~~adL~~~~F~~~~l~-a~f~~a~L~~a~f~~a 145 (281)
++|+|++++|.+++|.++.|. +.|.+|+|.+|+|.++
T Consensus 103 sgCdFS~csFs~~dLqDV~FEcA~Lg~CNFsgAdLsgA 140 (512)
T PRK09718 103 KGDVISKVSFLSSNLQHVTFECKEIGDCNFTTAIVDNV 140 (512)
T ss_pred cCCEEeeceecCCEEEeEEEeccccCccccccCCCCCC
Confidence 445555544444444444444 4444444444443333
No 10
>PF13599 Pentapeptide_4: Pentapeptide repeats (9 copies); PDB: 2XTY_A 2XTW_C 2XTX_B 3PSS_B 3PSZ_B 3NB2_B 3NAW_B 3SQV_A 2W7Z_B 2XT2_A ....
Probab=99.31 E-value=2.3e-12 Score=95.64 Aligned_cols=61 Identities=21% Similarity=0.400 Sum_probs=22.2
Q ss_pred eeceeeccccccceeeecccccccee-cccccccceecceeecccccccceecCccccceee
Q 023545 137 MRESDFSGSKFNGAYLEKAVAYKANF-TGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDL 197 (281)
Q Consensus 137 L~~a~f~~a~L~~a~l~~a~f~~a~l-~gAdLs~a~f~~a~f~~A~L~~A~L~~a~f~~adL 197 (281)
|.+|+|.+++|.++.|.+++|.+++| .++.|.++.+.++.|.+++|.++.|.+++|.+++|
T Consensus 8 f~~~~l~~~~f~~~~~~~~~f~~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~l~~~~f 69 (78)
T PF13599_consen 8 FSGCNLSGANFSGSNFKNCNFSNCNFFKEANFSNCQLDNSDFSNCDLKRASFSNCDLDNCDF 69 (78)
T ss_dssp EESCBCTTSBETTEEEESEBEETTBTTTTEBETTEBETTEBETTSBETTEEETTEB-TTEEE
T ss_pred EECCCCCCCEeECCEEECcEEECCccccCCeEECCCCCCCEEEeCEEeCCEEecCCccCCEe
Confidence 33333333333333333333333333 33333333333333333333333333333333333
No 11
>PF13599 Pentapeptide_4: Pentapeptide repeats (9 copies); PDB: 2XTY_A 2XTW_C 2XTX_B 3PSS_B 3PSZ_B 3NB2_B 3NAW_B 3SQV_A 2W7Z_B 2XT2_A ....
Probab=99.30 E-value=3e-12 Score=95.04 Aligned_cols=75 Identities=20% Similarity=0.411 Sum_probs=36.4
Q ss_pred eeeceeeccccccceeeeccccccceeccccc-ccceecceeecccccccceecCccccceeecCceecCccccCce
Q 023545 136 DMRESDFSGSKFNGAYLEKAVAYKANFTGADL-SDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAV 211 (281)
Q Consensus 136 ~L~~a~f~~a~L~~a~l~~a~f~~a~l~gAdL-s~a~f~~a~f~~A~L~~A~L~~a~f~~adL~gA~l~gAdf~~A~ 211 (281)
+|++++|.+++|.++.|.++.|.+++|.+++| .++.|.++.|.+++|++++|.++.|.+++|.+++|++ +|.++.
T Consensus 2 ~~~~~~f~~~~l~~~~f~~~~~~~~~f~~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~l~~~~f~~-~l~~~~ 77 (78)
T PF13599_consen 2 DFENCSFSGCNLSGANFSGSNFKNCNFSNCNFFKEANFSNCQLDNSDFSNCDLKRASFSNCDLDNCDFSG-NLKGCN 77 (78)
T ss_dssp EEESEEEESCBCTTSBETTEEEESEBEETTBTTTTEBETTEBETTEBETTSBETTEEETTEB-TTEEETS-BCTTCB
T ss_pred EEEEEEEECCCCCCCEeECCEEECcEEECCccccCCeEECCCCCCCEEEeCEEeCCEEecCCccCCEeEe-EcCCCc
Confidence 44455555555555555555555555555554 4444444444444444444444444444444444444 444443
No 12
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=26.36 E-value=75 Score=19.00 Aligned_cols=18 Identities=22% Similarity=0.178 Sum_probs=11.1
Q ss_pred cccHHHHHHHHHHHHHHH
Q 023545 65 LKNWRVFVSTALAAAVVA 82 (281)
Q Consensus 65 ~k~~~~~~~~~l~~~~~~ 82 (281)
.+.||+++..+++++++.
T Consensus 4 ~~mmKkil~~l~a~~~La 21 (25)
T PF08139_consen 4 LSMMKKILFPLLALFMLA 21 (25)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 356777777666555543
No 13
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=24.83 E-value=83 Score=29.47 Aligned_cols=16 Identities=38% Similarity=0.605 Sum_probs=9.9
Q ss_pred CCCCCCCCcccccccC
Q 023545 225 NGTNPITGVSTRKSLG 240 (281)
Q Consensus 225 ~g~np~tg~~tr~sLg 240 (281)
+-.||.+|.-..++.|
T Consensus 244 SVKNP~SG~I~A~~Ig 259 (277)
T PF12541_consen 244 SVKNPISGKIRADSIG 259 (277)
T ss_pred eecCCCCCEEEccccc
Confidence 4557877776555543
Done!