Query 023545
Match_columns 281
No_of_seqs 349 out of 1515
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 08:39:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023545.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023545hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f3l_A RFR-domain; beta helix, 100.0 5.6E-29 1.9E-33 215.6 8.3 135 108-242 49-184 (184)
2 3n90_A P15, thylakoid lumenal 99.9 2.6E-26 8.9E-31 192.3 6.1 137 108-244 8-146 (152)
3 2o6w_A Repeat five residue (RF 99.8 1.7E-20 5.9E-25 156.9 5.7 18 109-126 16-33 (150)
4 2o6w_A Repeat five residue (RF 99.8 4.8E-21 1.6E-25 160.3 1.4 107 108-214 20-140 (150)
5 2bm5_A MFPA, RV3361C, pentapep 99.8 5.9E-19 2E-23 151.4 7.9 57 161-217 101-157 (186)
6 2w7z_A EFSQNR, pentapeptide re 99.8 8.4E-19 2.9E-23 153.5 7.6 34 187-220 172-205 (214)
7 3n90_A P15, thylakoid lumenal 99.7 2.6E-19 8.8E-24 149.7 2.3 103 110-212 15-119 (152)
8 2xty_A QNRB1; cell cycle, pent 99.7 1.5E-18 5E-23 152.1 6.9 37 185-221 172-208 (217)
9 2f3l_A RFR-domain; beta helix, 99.7 2.9E-19 9.9E-24 154.5 1.9 107 111-217 47-154 (184)
10 3pss_A QNR; pentapeptide repea 99.7 2.7E-18 9.2E-23 149.3 5.9 38 185-222 171-208 (216)
11 2xt2_A ALBG, MCBG-like protein 99.7 2.6E-18 9E-23 147.7 4.8 59 112-170 30-89 (200)
12 2xt2_A ALBG, MCBG-like protein 99.7 2.9E-18 9.8E-23 147.5 4.4 104 111-214 54-164 (200)
13 3pss_A QNR; pentapeptide repea 99.7 8.6E-18 2.9E-22 146.2 5.2 40 110-149 65-105 (216)
14 3nb2_A Secreted effector prote 99.7 1.9E-17 6.4E-22 165.9 4.7 85 109-193 35-124 (613)
15 3nb2_A Secreted effector prote 99.7 1.1E-17 3.8E-22 167.5 2.9 108 109-216 30-145 (613)
16 2qyu_A Secreted effector prote 99.6 1E-15 3.4E-20 152.3 5.5 108 108-215 37-154 (627)
17 2qyu_A Secreted effector prote 99.5 4.1E-15 1.4E-19 147.9 4.0 106 107-212 41-156 (627)
No 1
>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A
Probab=99.95 E-value=5.6e-29 Score=215.58 Aligned_cols=135 Identities=39% Similarity=0.600 Sum_probs=129.0
Q ss_pred CCCceEccCcccccccccceeE-EEeCcceeeceeeccccccceeeeccccccceecccccccceecceeecccccccce
Q 023545 108 GSAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAV 186 (281)
Q Consensus 108 ~sg~~f~~adL~~~~F~~~~l~-a~f~~a~L~~a~f~~a~L~~a~l~~a~f~~a~l~gAdLs~a~f~~a~f~~A~L~~A~ 186 (281)
..+.+|++++|++++|.+++|+ ++|.+|+|.+++|++++|++++|.+++|.+++|.+|+|+++.|.+++|.+|+|++|+
T Consensus 49 ~~~~~f~~~~l~~~df~~~~L~~~~f~~~~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~L~~a~l~~a~f~~a~L~~a~ 128 (184)
T 2f3l_A 49 GSSASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLTNAV 128 (184)
T ss_dssp ---CEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEEEEECTTCBCTTCB
T ss_pred ccCccccCCeECCCcCCCCCcCCCEeccCccccCCcCCCCCcEeEEeeeccCCCeEEEeecccceecCcEeCccEeCCCE
Confidence 3578999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCccccceeecCceecCccccCceeCHHHHHHHhhhcCCCCCCCCcccccccCCC
Q 023545 187 LVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGCG 242 (281)
Q Consensus 187 L~~a~f~~adL~gA~l~gAdf~~A~l~~~q~~~lc~~a~g~np~tg~~tr~sLgc~ 242 (281)
|.+++|.+++|.+++|++++|++|+|.+.++..+|.+++|+||+||++||++|||+
T Consensus 129 l~~a~l~~a~f~~a~L~gadf~~a~l~~~~l~~~c~~~~g~n~~t~~~tr~sl~c~ 184 (184)
T 2f3l_A 129 LTEAIMMRTKFDDAKITGADFSLAVLDVYEVDKLCDRADGVNPKTGVSTRESLRCQ 184 (184)
T ss_dssp CTTCEEEEEECTTCBCTTCBCTTCEECHHHHHHHHTTCCCBCTTTCCBHHHHTTC-
T ss_pred eeCCEECCCEEeCCEecCCEecCCCCCcChHHHhhccccCCCcccccchhhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999996
No 2
>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} SCOP: b.80.8.0
Probab=99.92 E-value=2.6e-26 Score=192.35 Aligned_cols=137 Identities=29% Similarity=0.395 Sum_probs=123.8
Q ss_pred CCCceEccCcccccccccceeE-EEeCcceeeceeeccccccceeeeccccccceecccccccceecceeecccccccce
Q 023545 108 GSAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAV 186 (281)
Q Consensus 108 ~sg~~f~~adL~~~~F~~~~l~-a~f~~a~L~~a~f~~a~L~~a~l~~a~f~~a~l~gAdLs~a~f~~a~f~~A~L~~A~ 186 (281)
..+++|++++|++++|.+++|. ++|.+++|.+++|.+++|.+++|.+++|.+++|.+|+|++++|.+++|.+++|++|+
T Consensus 8 ~~~~~~~~~~l~~~~f~~~~l~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~ 87 (152)
T 3n90_A 8 YGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNAN 87 (152)
T ss_dssp CCHHHHTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCB
T ss_pred ccCceEcCCCccCCcCCCCCcCcCccCCCeeCCCEeCCCCCCCCCccccCcCCCEeCCCCcCCCCCCCCCcCCCCcCCCC
Confidence 3467788888888888888888 888888888888888888899999999999999999999999999999999999999
Q ss_pred ecCccccc-eeecCceecCccccCceeCHHHHHHHhhhcCCCCCCCCcccccccCCCCC
Q 023545 187 LVRTVLTR-SDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGCGNS 244 (281)
Q Consensus 187 L~~a~f~~-adL~gA~l~gAdf~~A~l~~~q~~~lc~~a~g~np~tg~~tr~sLgc~~~ 244 (281)
|.+++|.+ ++|++++|++++|+++.|.+.++..+|.+++|+||.+|..||++|.|...
T Consensus 88 l~~a~~~g~~~~~~a~l~~a~~~~a~l~~~~l~~lc~~~~g~n~~~~~~tr~~~~~~~~ 146 (152)
T 3n90_A 88 LEGATMMGNTSFKGSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNATRDTLLCNLE 146 (152)
T ss_dssp CTTCBCCSSCBCTTCBCTTCBCTTCCCCHHHHHHHHHHCCCBCTTTCCBHHHHTTTTC-
T ss_pred CCCCEEcCCceECCCEecCCEecCCccCcHHHHHHhhhhhCcCCccccchhhhhhhhhh
Confidence 99999995 99999999999999999999999999999999999999999999987654
No 3
>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece}
Probab=99.80 E-value=1.7e-20 Score=156.91 Aligned_cols=18 Identities=6% Similarity=0.075 Sum_probs=9.2
Q ss_pred CCceEccCcccccccccc
Q 023545 109 SAAQFGSADLRKAVHVKE 126 (281)
Q Consensus 109 sg~~f~~adL~~~~F~~~ 126 (281)
.+|+|++++|++++|.++
T Consensus 16 ~~~~l~~~dL~~~~l~~~ 33 (150)
T 2o6w_A 16 VGCNLEGVNLPRENFGLK 33 (150)
T ss_dssp TTCBCTTCBCTTCBCSSS
T ss_pred CCcccCCCCCCCCCcccC
Confidence 345555555555555444
No 4
>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece}
Probab=99.80 E-value=4.8e-21 Score=160.31 Aligned_cols=107 Identities=21% Similarity=0.320 Sum_probs=54.4
Q ss_pred CCCceEccCccccc-------------ccccceeE-EEeCcceeeceeeccccccceeeeccccccceecccccccceec
Q 023545 108 GSAAQFGSADLRKA-------------VHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMD 173 (281)
Q Consensus 108 ~sg~~f~~adL~~~-------------~F~~~~l~-a~f~~a~L~~a~f~~a~L~~a~l~~a~f~~a~l~gAdLs~a~f~ 173 (281)
.++++|++++|+++ +|.+++|. ++|.+++|++++|.+++|++++|.+++|.+++|.+++|++++|.
T Consensus 20 l~~~dL~~~~l~~~~~~~~~~~~l~~~~f~~a~l~~~~l~~a~l~~a~l~~a~l~~a~~~~a~l~~a~l~~a~l~~a~~~ 99 (150)
T 2o6w_A 20 LEGVNLPRENFGLKYRIPRSSSPLVTTPFGMDKAKPVDLTRANLSNANLYQSDLSSIILENAILVETNLSETDLENAILI 99 (150)
T ss_dssp CTTCBCTTCBCSSSCBCC---CTTCCBSTTCTTCCCCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCT
T ss_pred cCCCCCCCCCcccCcccccccCccccCccCCCCcCCCEeCCCCCCCCCccCCCCCCCCcCCCCCCCCEecCCCCCCCEec
Confidence 45666666666655 45555555 55555555555555555555555555555555555555444444
Q ss_pred ceeecccccccceecCccccceeecCceecCccccCceeCH
Q 023545 174 RMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDL 214 (281)
Q Consensus 174 ~a~f~~A~L~~A~L~~a~f~~adL~gA~l~gAdf~~A~l~~ 214 (281)
+++|.+++|++|+|.+++|.+++|++++|.+++|++++|.+
T Consensus 100 ~a~L~~a~l~~a~L~~a~~~~a~L~~a~l~~a~l~~a~l~g 140 (150)
T 2o6w_A 100 GANLQGANLENANLQGANLENANLRGAILTGVNLEETHLKG 140 (150)
T ss_dssp TCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTT
T ss_pred CCCCCCCCCCCceecccEECCCCcCcCCccCCCCCCCCcCC
Confidence 44444444444444444444444444444444444444443
No 5
>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A
Probab=99.76 E-value=5.9e-19 Score=151.43 Aligned_cols=57 Identities=23% Similarity=0.337 Sum_probs=25.7
Q ss_pred eecccccccceecceeecccccccceecCccccceeecCceecCccccCceeCHHHH
Q 023545 161 NFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQK 217 (281)
Q Consensus 161 ~l~gAdLs~a~f~~a~f~~A~L~~A~L~~a~f~~adL~gA~l~gAdf~~A~l~~~q~ 217 (281)
+|++++|++++|.+++|.+|+|++++|.+++|++++|.+++|++++|++|.|.+.++
T Consensus 101 ~l~~a~f~~a~l~~a~f~~a~L~~a~f~~~~l~~a~f~~a~L~~adl~~a~l~~~~~ 157 (186)
T 2bm5_A 101 DLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLW 157 (186)
T ss_dssp BCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCCHHHH
T ss_pred ccCCCeeccCEEecCccCCCccCCCCcCCCccCCCEecCCccCCcccCCCEeecccc
Confidence 333333333334444444444444444444444444444455555555555555443
No 6
>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis}
Probab=99.75 E-value=8.4e-19 Score=153.47 Aligned_cols=34 Identities=12% Similarity=0.063 Sum_probs=14.8
Q ss_pred ecCccccceeecCceecCccccCceeCHHHHHHH
Q 023545 187 LVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQAL 220 (281)
Q Consensus 187 L~~a~f~~adL~gA~l~gAdf~~A~l~~~q~~~l 220 (281)
|.+++|.+++|.+++|.+++|++|+|+..|...+
T Consensus 172 l~~~~l~~a~l~~~~~~~a~l~ga~~~~~q~~~l 205 (214)
T 2w7z_A 172 LXGLDFSQNTFERLTFSPNYLSGLXVTPEQAIYL 205 (214)
T ss_dssp CTTCBCTTSBCSCCBCCGGGCTTCEECHHHHHHH
T ss_pred eccCCcccCCcCceEcCHHHcCCcccCHHHHHHH
Confidence 3333333333344444444444555555554443
No 7
>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} SCOP: b.80.8.0
Probab=99.74 E-value=2.6e-19 Score=149.70 Aligned_cols=103 Identities=22% Similarity=0.351 Sum_probs=46.0
Q ss_pred CceEccCcccccccccceeE-EEeCcceeeceeeccccccceeeeccccccceecccccccceecceeecccccccceec
Q 023545 110 AAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLV 188 (281)
Q Consensus 110 g~~f~~adL~~~~F~~~~l~-a~f~~a~L~~a~f~~a~L~~a~l~~a~f~~a~l~gAdLs~a~f~~a~f~~A~L~~A~L~ 188 (281)
+++|.+++|++++|.+++|. ++|.+++|.+|+|.+++|.+++|.+++|.+|+|++++|.+++|.+++|.+|+|+++.|.
T Consensus 15 ~~~l~~~~f~~~~l~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~~~ 94 (152)
T 3n90_A 15 GQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATMM 94 (152)
T ss_dssp TCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCC
T ss_pred CCCccCCcCCCCCcCcCccCCCeeCCCEeCCCCCCCCCccccCcCCCEeCCCCcCCCCCCCCCcCCCCcCCCCCCCCEEc
Confidence 33444444444444444444 44444444444444444444444444444444444444444444444444444444444
Q ss_pred C-ccccceeecCceecCccccCcee
Q 023545 189 R-TVLTRSDLGGAIIEGADFSDAVI 212 (281)
Q Consensus 189 ~-a~f~~adL~gA~l~gAdf~~A~l 212 (281)
+ ++|.+++|++++|++++|+++.+
T Consensus 95 g~~~~~~a~l~~a~~~~a~l~~~~l 119 (152)
T 3n90_A 95 GNTSFKGSNITGADFTDVPLRDDQR 119 (152)
T ss_dssp SSCBCTTCBCTTCBCTTCCCCHHHH
T ss_pred CCceECCCEecCCEecCCccCcHHH
Confidence 2 44444444444444444444444
No 8
>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A
Probab=99.74 E-value=1.5e-18 Score=152.09 Aligned_cols=37 Identities=32% Similarity=0.362 Sum_probs=16.6
Q ss_pred ceecCccccceeecCceecCccccCceeCHHHHHHHh
Q 023545 185 AVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALC 221 (281)
Q Consensus 185 A~L~~a~f~~adL~gA~l~gAdf~~A~l~~~q~~~lc 221 (281)
++|++++|++++|.++++++++|++++++..|...+.
T Consensus 172 a~l~~adl~~a~l~~~~l~~a~l~ga~~~~~q~~~l~ 208 (217)
T 2xty_A 172 ANFTHCDLTNSELGDLDIRGVDLQGVKLDNYQASLLM 208 (217)
T ss_dssp SBCTTCBCTTCBCTTCCTTTSCCTTCEECHHHHHHHH
T ss_pred CcCCCCcCCCCCcCCCcCCCCccCcCEechHHHHHHH
Confidence 3333333333334444444444555555555554443
No 9
>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A
Probab=99.74 E-value=2.9e-19 Score=154.47 Aligned_cols=107 Identities=24% Similarity=0.260 Sum_probs=63.3
Q ss_pred ceEccCcccccccccceeE-EEeCcceeeceeeccccccceeeeccccccceecccccccceecceeecccccccceecC
Q 023545 111 AQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVR 189 (281)
Q Consensus 111 ~~f~~adL~~~~F~~~~l~-a~f~~a~L~~a~f~~a~L~~a~l~~a~f~~a~l~gAdLs~a~f~~a~f~~A~L~~A~L~~ 189 (281)
..+.+++|++++|.+++|. ++|.+++|.+|+|.+++|++++|.+++|.+|+|.+++|++++|.+++|.+++|++|+|.+
T Consensus 47 ~~~~~~~f~~~~l~~~df~~~~L~~~~f~~~~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~L~~a~l~~a~f~~a~L~~ 126 (184)
T 2f3l_A 47 VTGSSASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLTN 126 (184)
T ss_dssp -----CEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEEEEECTTCBCTT
T ss_pred ccccCccccCCeECCCcCCCCCcCCCEeccCccccCCcCCCCCcEeEEeeeccCCCeEEEeecccceecCcEeCccEeCC
Confidence 3444555666666666666 666666666666666666666666666666666666666666666666666666666666
Q ss_pred ccccceeecCceecCccccCceeCHHHH
Q 023545 190 TVLTRSDLGGAIIEGADFSDAVIDLAQK 217 (281)
Q Consensus 190 a~f~~adL~gA~l~gAdf~~A~l~~~q~ 217 (281)
++|.+++|.+++|.+++|++|+|.++.+
T Consensus 127 a~l~~a~l~~a~f~~a~L~gadf~~a~l 154 (184)
T 2f3l_A 127 AVLTEAIMMRTKFDDAKITGADFSLAVL 154 (184)
T ss_dssp CBCTTCEEEEEECTTCBCTTCBCTTCEE
T ss_pred CEeeCCEECCCEEeCCEecCCEecCCCC
Confidence 6666666666666666666666665554
No 10
>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A
Probab=99.72 E-value=2.7e-18 Score=149.35 Aligned_cols=38 Identities=26% Similarity=0.281 Sum_probs=18.0
Q ss_pred ceecCccccceeecCceecCccccCceeCHHHHHHHhh
Q 023545 185 AVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCK 222 (281)
Q Consensus 185 A~L~~a~f~~adL~gA~l~gAdf~~A~l~~~q~~~lc~ 222 (281)
++|++++|++++|.++++.+++|++++++..|...+++
T Consensus 171 ~~l~~a~l~~a~l~~~~l~~~~l~ga~~~~~q~~~l~~ 208 (216)
T 3pss_A 171 VNLQGCDLRQCDLPGLDLRRVNLDGVQINEDQQQALLE 208 (216)
T ss_dssp SBCTTCBCTTCCCTTCCTTTSCCTTCEEEGGGHHHHHH
T ss_pred cccCCCCccCCEecCcccccCcccCcEeCHHHHHHHHH
Confidence 33333444444444444444455555555555555443
No 11
>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A
Probab=99.72 E-value=2.6e-18 Score=147.73 Aligned_cols=59 Identities=8% Similarity=0.229 Sum_probs=23.0
Q ss_pred eEccCcccccccccceeE-EEeCcceeeceeeccccccceeeeccccccceecccccccc
Q 023545 112 QFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDT 170 (281)
Q Consensus 112 ~f~~adL~~~~F~~~~l~-a~f~~a~L~~a~f~~a~L~~a~l~~a~f~~a~l~gAdLs~a 170 (281)
+|.+++|++++|.+++|. +.|.+|+|.+|+|.+++|.++.|.++.|.+|+|.+++|+++
T Consensus 30 ~~~~~~f~~~~~~~~~l~~~~~~~~~f~~~~l~~a~~~~a~l~~~~f~~~~l~~a~f~~a 89 (200)
T 2xt2_A 30 RFEDCTFRQCNFTEAELNRCKFRECEFVDCNLSLISIPQTSFMEVRFVDCKMLGVNWTSA 89 (200)
T ss_dssp EEESCEEESCBCTTCEEESCEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBGGGS
T ss_pred EEccCEEEeeeccCCeecCCEEEecEeeecccccCccccCeeeeeEEEcCEecCCccccC
Confidence 333333333333333333 33333333344444433333333333333333333333333
No 12
>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A
Probab=99.71 E-value=2.9e-18 Score=147.50 Aligned_cols=104 Identities=19% Similarity=0.256 Sum_probs=43.9
Q ss_pred ceEccCcccccccccceeE-EEeCcceeeceeecccc------ccceeeeccccccceecccccccceecceeecccccc
Q 023545 111 AQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSK------FNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLT 183 (281)
Q Consensus 111 ~~f~~adL~~~~F~~~~l~-a~f~~a~L~~a~f~~a~------L~~a~l~~a~f~~a~l~gAdLs~a~f~~a~f~~A~L~ 183 (281)
|+|.+++|++++|.+++|. +.|.+|+|.+++|.+++ |.++.|.+++|.+++|.+++|.+++|.+++|.+++|+
T Consensus 54 ~~f~~~~l~~a~~~~a~l~~~~f~~~~l~~a~f~~a~~~~~~~l~~~~f~~~~l~~a~f~~a~l~~~~f~~~~l~~a~f~ 133 (200)
T 2xt2_A 54 CEFVDCNLSLISIPQTSFMEVRFVDCKMLGVNWTSAQWPSVKMEGALSFERCILNDSLFYGLYLAGVKMVECRIHDANFT 133 (200)
T ss_dssp EEEESCBCTTCBCTTCEEEEEEEESCBCTTCBGGGSCCCSSCCTTSEEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCT
T ss_pred cEeeecccccCccccCeeeeeEEEcCEecCCccccCcccccccccceEEEcCcccccEEccCccCCCEecCCEeecccCC
Confidence 3333344444444444444 44444444444444444 3333344444444444444444444444444444444
Q ss_pred cceecCccccceeecCceecCccccCceeCH
Q 023545 184 NAVLVRTVLTRSDLGGAIIEGADFSDAVIDL 214 (281)
Q Consensus 184 ~A~L~~a~f~~adL~gA~l~gAdf~~A~l~~ 214 (281)
+|+|++++|.+++|++++|.+++|++++|.+
T Consensus 134 ~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~ 164 (200)
T 2xt2_A 134 EADCEDADFTQSDLKGSTFHNTKLTGASFID 164 (200)
T ss_dssp TCBCTTCBCTTCBCTTCBCSSCBCTTCBCTT
T ss_pred CCccccCCccCcccCCCCccCCccccCCcCC
Confidence 4444444444444444444444444444433
No 13
>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A
Probab=99.69 E-value=8.6e-18 Score=146.15 Aligned_cols=40 Identities=20% Similarity=0.227 Sum_probs=18.2
Q ss_pred CceEccCcccccccccceeE-EEeCcceeeceeeccccccc
Q 023545 110 AAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNG 149 (281)
Q Consensus 110 g~~f~~adL~~~~F~~~~l~-a~f~~a~L~~a~f~~a~L~~ 149 (281)
+++|.+++|++++|.+++|. ++|.+|+|.+++|.+++|.+
T Consensus 65 ~~~f~~~~l~~~~f~~a~l~~~~f~~~~l~~a~f~~a~l~~ 105 (216)
T 3pss_A 65 EASFLRCDLTMADCSRSQCLGLELRDCQALGINFSRASFAN 105 (216)
T ss_dssp TCEEESCBCTTCBCTTCBCTTEEEESCBCTTCBCTTCBCEE
T ss_pred CCCcCccCCCCCccCCCCcccCCcccCcccCCCcccCcccc
Confidence 34444444444444444444 44444444444444444433
No 14
>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A
Probab=99.67 E-value=1.9e-17 Score=165.91 Aligned_cols=85 Identities=22% Similarity=0.321 Sum_probs=44.9
Q ss_pred CCceEccCcccccccccceeE-EEeCcceeeceeeccccccceeeeccccccceecccccccce----ecceeecccccc
Q 023545 109 SAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTL----MDRMVLNEANLT 183 (281)
Q Consensus 109 sg~~f~~adL~~~~F~~~~l~-a~f~~a~L~~a~f~~a~L~~a~l~~a~f~~a~l~gAdLs~a~----f~~a~f~~A~L~ 183 (281)
++++|++++|++++|.+++|. ++|.+|+|++|+|.+++|.+|+|.+|+|.+|+|.+|+|++|+ |.+++|.+|+|+
T Consensus 35 sgadLsgadfsg~dLs~a~fsgA~L~~a~f~~anLsgA~L~gA~L~~a~L~~anL~~AnL~~A~L~a~L~~A~LsgAdL~ 114 (613)
T 3nb2_A 35 SGCDLSGLSLVGLNLSSVNFSGAVLDDTDLRMSDLSQAVLENCSFKNSILNECNFCYANLSNCIIRALFENSNFSNSNLK 114 (613)
T ss_dssp TTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCEEEEEECTTCBCTTCBCTTCEEEEECTTCBCTTCBCT
T ss_pred CCCEecCCCcCCCcCCCCcccCCeeeEEEecCCEeCCCCCCCCEeCCCccCCCccCCCccccCcccceeccCEecCCeec
Confidence 455555555555555555555 555555555555555555555555555555555555555555 444444444444
Q ss_pred cceecCcccc
Q 023545 184 NAVLVRTVLT 193 (281)
Q Consensus 184 ~A~L~~a~f~ 193 (281)
+|+|.+++|.
T Consensus 115 ~AdL~gA~f~ 124 (613)
T 3nb2_A 115 NASFKGSSYI 124 (613)
T ss_dssp TCBCTTCBCS
T ss_pred ccEEeccEEe
Confidence 4444444443
No 15
>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A
Probab=99.67 E-value=1.1e-17 Score=167.54 Aligned_cols=108 Identities=19% Similarity=0.272 Sum_probs=69.5
Q ss_pred CCceEccCcccccccccceeE-EEeCcceeeceeeccccccceeeeccccccceecccccccceeccee----ecccccc
Q 023545 109 SAAQFGSADLRKAVHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMV----LNEANLT 183 (281)
Q Consensus 109 sg~~f~~adL~~~~F~~~~l~-a~f~~a~L~~a~f~~a~L~~a~l~~a~f~~a~l~gAdLs~a~f~~a~----f~~A~L~ 183 (281)
.+++|++++|++++|.+++|. ++|.+|+|.+|+|.+|+|.+|+|.+|+|.+|+|.+|+|.+|+|.+++ |.+|+|+
T Consensus 30 ~~~dfsgadLsgadfsg~dLs~a~fsgA~L~~a~f~~anLsgA~L~gA~L~~a~L~~anL~~AnL~~A~L~a~L~~A~Ls 109 (613)
T 3nb2_A 30 EELNYSGCDLSGLSLVGLNLSSVNFSGAVLDDTDLRMSDLSQAVLENCSFKNSILNECNFCYANLSNCIIRALFENSNFS 109 (613)
T ss_dssp TTTBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCEEEEEECTTCBCTTCBCTTCEEEEECTTCBCT
T ss_pred CCCeeCCCEecCCCcCCCcCCCCcccCCeeeEEEecCCEeCCCCCCCCEeCCCccCCCccCCCccccCcccceeccCEec
Confidence 466666666666666666666 66666666666666666666666666666666666666666666666 6666666
Q ss_pred cceecCccccceeecC--ceecCccccCcee-CHHH
Q 023545 184 NAVLVRTVLTRSDLGG--AIIEGADFSDAVI-DLAQ 216 (281)
Q Consensus 184 ~A~L~~a~f~~adL~g--A~l~gAdf~~A~l-~~~q 216 (281)
+|+|.+|+|.+++|++ |+|.+|+|++|.| .+++
T Consensus 110 gAdL~~AdL~gA~f~~~~adL~gAdL~gA~Ll~gAd 145 (613)
T 3nb2_A 110 NSNLKNASFKGSSYIQYPPILNEADLTGAIIIPGMV 145 (613)
T ss_dssp TCBCTTCBCTTCBCSSSCCBCTTCBCTTCEECTTCC
T ss_pred CCeecccEEeccEEecCccceeccccCCCeeCCCce
Confidence 6666666666666664 5555555555555 4444
No 16
>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A
Probab=99.57 E-value=1e-15 Score=152.26 Aligned_cols=108 Identities=16% Similarity=0.207 Sum_probs=47.7
Q ss_pred CCCceEccCcccccccccce------eE-EEeCcceeeceeeccccccceeeeccccccceecccccccceecceeeccc
Q 023545 108 GSAAQFGSADLRKAVHVKEN------FR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEA 180 (281)
Q Consensus 108 ~sg~~f~~adL~~~~F~~~~------l~-a~f~~a~L~~a~f~~a~L~~a~l~~a~f~~a~l~gAdLs~a~f~~a~f~~A 180 (281)
..+.+|+++||++++|.+++ .. ++|.+++|.+|+|.+++|++++|.+|+|.+++|++|+|.+|+|.+|+|.+|
T Consensus 37 ~~drDFsg~DLsgadLs~a~~~a~le~~ga~L~GanLsgAnLs~AdLs~A~L~gAnLs~AnLsgA~L~~AnLsgAnLsgA 116 (627)
T 2qyu_A 37 AADRDFSNADFRNITFSKILPPSFMERDGDIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEV 116 (627)
T ss_dssp TTTTBCTTCBCTTCBGGGTSCGGGGSTTCCCEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTC
T ss_pred ccCCcCCCCCCCCCccccccccccccccCCccCCCccCCCccCCCCCCCCccCCcccCCCchhhhccccceECCcCCCCc
Confidence 34567777888887777752 11 233333333333333333333333333333333333333333333333333
Q ss_pred ccccceec--CccccceeecCcee-cCccccCceeCHH
Q 023545 181 NLTNAVLV--RTVLTRSDLGGAII-EGADFSDAVIDLA 215 (281)
Q Consensus 181 ~L~~A~L~--~a~f~~adL~gA~l-~gAdf~~A~l~~~ 215 (281)
+|.+|+|. +|+|.+|+|++|+| .||+|++|.|.+.
T Consensus 117 nL~gA~L~~~gAnLsgAdL~gA~L~~gAdLsGA~L~~a 154 (627)
T 2qyu_A 117 FLQYSITTQQQPSFIDTTLKNTLIRHKANLSGVILNEP 154 (627)
T ss_dssp EECCCTTCCSCCEEEEEECTTCEECSCCEEEEEECCCC
T ss_pred ccCCccccCCCCeeCCCCCCCCccccCccCCCCcCCCC
Confidence 33333332 34444455555544 3455555555443
No 17
>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A
Probab=99.51 E-value=4.1e-15 Score=147.87 Aligned_cols=106 Identities=17% Similarity=0.184 Sum_probs=56.1
Q ss_pred cCCCceEccCccccc------ccccceeE-EEeCcceeeceeeccccccceeeeccccccceecccccccceecceeecc
Q 023545 107 IGSAAQFGSADLRKA------VHVKENFR-ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNE 179 (281)
Q Consensus 107 ~~sg~~f~~adL~~~------~F~~~~l~-a~f~~a~L~~a~f~~a~L~~a~l~~a~f~~a~l~gAdLs~a~f~~a~f~~ 179 (281)
..++++|++++|.++ +..+|+|. ++|.+|+|.+++|++++|.+|+|.+|+|.+++|++|+|++|+|.+++|.+
T Consensus 41 DFsg~DLsgadLs~a~~~a~le~~ga~L~GanLsgAnLs~AdLs~A~L~gAnLs~AnLsgA~L~~AnLsgAnLsgAnL~g 120 (627)
T 2qyu_A 41 DFSNADFRNITFSKILPPSFMERDGDIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEVFLQY 120 (627)
T ss_dssp BCTTCBCTTCBGGGTSCGGGGSTTCCCEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCEECC
T ss_pred cCCCCCCCCCccccccccccccccCCccCCCccCCCccCCCCCCCCccCCcccCCCchhhhccccceECCcCCCCcccCC
Confidence 345666767666654 33444444 44444444444444444444444444444444444444444444455555
Q ss_pred cccc--cceecCccccceee-cCceecCccccCcee
Q 023545 180 ANLT--NAVLVRTVLTRSDL-GGAIIEGADFSDAVI 212 (281)
Q Consensus 180 A~L~--~A~L~~a~f~~adL-~gA~l~gAdf~~A~l 212 (281)
|+|+ +|+|.+|+|++++| .+|+|+||+|+++..
T Consensus 121 A~L~~~gAnLsgAdL~gA~L~~gAdLsGA~L~~ad~ 156 (627)
T 2qyu_A 121 SITTQQQPSFIDTTLKNTLIRHKANLSGVILNEPDN 156 (627)
T ss_dssp CTTCCSCCEEEEEECTTCEECSCCEEEEEECCCCCS
T ss_pred ccccCCCCeeCCCCCCCCccccCccCCCCcCCCCcc
Confidence 4443 45555555555555 356666666666654
Done!