Query 023546
Match_columns 281
No_of_seqs 133 out of 1124
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 04:52:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023546.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023546hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0547 TrpD Anthranilate phos 100.0 4.1E-80 8.9E-85 567.2 31.2 274 1-274 63-338 (338)
2 PLN02641 anthranilate phosphor 100.0 7.4E-78 1.6E-82 557.5 30.2 275 1-275 62-336 (343)
3 PRK07394 hypothetical protein; 100.0 3.1E-75 6.7E-80 540.9 30.9 266 1-269 68-341 (342)
4 TIGR01245 trpD anthranilate ph 100.0 5.9E-73 1.3E-77 524.7 30.1 270 1-270 56-329 (330)
5 PRK00188 trpD anthranilate pho 100.0 1.9E-72 4E-77 523.4 31.4 275 1-275 62-338 (339)
6 PRK14607 bifunctional glutamin 100.0 3.4E-72 7.4E-77 549.0 30.6 274 1-274 254-530 (534)
7 PRK09522 bifunctional glutamin 100.0 8.6E-72 1.9E-76 543.7 29.5 270 1-271 259-530 (531)
8 PF00591 Glycos_transf_3: Glyc 100.0 6.3E-73 1.4E-77 507.4 19.5 250 13-262 2-252 (252)
9 PRK08136 glycosyl transferase 100.0 1.1E-66 2.4E-71 477.9 25.2 244 1-250 66-316 (317)
10 KOG1438 Anthranilate phosphori 100.0 2.2E-65 4.8E-70 447.0 18.9 264 11-274 101-371 (373)
11 PRK09071 hypothetical protein; 100.0 4.4E-64 9.6E-69 462.4 26.3 247 1-259 67-318 (323)
12 PRK06078 pyrimidine-nucleoside 100.0 4.7E-47 1E-51 358.4 24.2 239 1-278 62-322 (434)
13 TIGR02644 Y_phosphoryl pyrimid 100.0 1.7E-41 3.6E-46 318.6 21.2 237 1-278 60-320 (405)
14 PRK04350 thymidine phosphoryla 100.0 1.6E-39 3.6E-44 310.0 23.2 236 1-275 140-395 (490)
15 PRK05820 deoA thymidine phosph 100.0 1.8E-33 3.9E-38 266.5 18.1 244 1-277 63-325 (440)
16 TIGR02643 T_phosphoryl thymidi 100.0 1.2E-32 2.6E-37 259.8 20.0 244 1-278 62-325 (437)
17 TIGR02645 ARCH_P_rylase putati 100.0 3.2E-31 7E-36 253.1 25.1 241 1-276 145-401 (493)
18 TIGR03327 AMP_phos AMP phospho 100.0 1.2E-30 2.6E-35 249.2 20.2 243 1-278 146-403 (500)
19 COG0213 DeoA Thymidine phospho 99.9 2.4E-21 5.1E-26 179.8 15.1 233 12-278 77-323 (435)
20 PF13344 Hydrolase_6: Haloacid 73.2 3.2 6.9E-05 31.7 2.6 58 14-71 2-59 (101)
21 PRK14723 flhF flagellar biosyn 69.7 1.4E+02 0.003 31.4 14.1 129 13-158 186-332 (767)
22 TIGR01457 HAD-SF-IIA-hyp2 HAD- 66.1 63 0.0014 28.6 9.7 120 14-149 5-133 (249)
23 COG1393 ArsC Arsenate reductas 64.2 6.7 0.00014 31.0 2.7 90 66-159 6-99 (117)
24 PRK10444 UMP phosphatase; Prov 63.6 20 0.00044 31.9 6.1 71 14-84 5-80 (248)
25 PF02374 ArsA_ATPase: Anion-tr 62.3 5.9 0.00013 36.6 2.4 44 17-65 6-49 (305)
26 COG0563 Adk Adenylate kinase a 62.0 31 0.00067 29.2 6.6 89 17-110 5-105 (178)
27 PRK05703 flhF flagellar biosyn 60.1 92 0.002 30.1 10.3 135 13-158 222-366 (424)
28 PRK12724 flagellar biosynthesi 51.9 1.5E+02 0.0033 28.9 10.1 131 14-158 225-368 (432)
29 PF11501 Nsp1: Non structural 50.1 13 0.00028 28.4 2.1 24 238-261 16-39 (115)
30 TIGR01458 HAD-SF-IIA-hyp3 HAD- 50.0 44 0.00095 29.8 5.9 73 14-86 5-86 (257)
31 cd02117 NifH_like This family 47.5 13 0.00029 31.9 2.1 32 15-48 3-34 (212)
32 cd00443 ADA_AMPD Adenosine/AMP 46.4 1.1E+02 0.0023 28.0 8.0 123 14-151 138-275 (305)
33 PRK12723 flagellar biosynthesi 45.4 2.8E+02 0.0062 26.5 11.8 129 13-158 175-321 (388)
34 COG2313 IndA Uncharacterized e 45.0 25 0.00053 31.8 3.3 78 18-98 102-195 (310)
35 TIGR00676 fadh2 5,10-methylene 44.5 46 0.001 30.0 5.2 71 77-160 20-96 (272)
36 COG0106 HisA Phosphoribosylfor 43.7 96 0.0021 27.8 6.9 82 72-156 31-127 (241)
37 cd00287 ribokinase_pfkB_like r 43.6 1.2E+02 0.0026 24.8 7.3 17 33-49 41-57 (196)
38 PRK13230 nitrogenase reductase 43.6 17 0.00037 32.6 2.2 32 15-48 4-35 (279)
39 TIGR01287 nifH nitrogenase iro 43.5 16 0.00035 32.6 2.1 31 15-47 3-33 (275)
40 COG0240 GpsA Glycerol-3-phosph 43.1 1.6E+02 0.0036 27.6 8.6 97 29-163 11-109 (329)
41 PRK11889 flhF flagellar biosyn 43.1 3E+02 0.0064 26.9 10.5 131 13-158 242-386 (436)
42 cd02032 Bchl_like This family 42.9 17 0.00037 32.3 2.1 31 16-48 4-34 (267)
43 TIGR00677 fadh2_euk methylenet 42.5 56 0.0012 29.7 5.5 71 77-160 21-97 (281)
44 cd02037 MRP-like MRP (Multiple 42.2 22 0.00049 29.1 2.6 29 18-48 6-34 (169)
45 PRK00162 glpE thiosulfate sulf 42.1 71 0.0015 23.9 5.2 84 71-159 6-91 (108)
46 PF02641 DUF190: Uncharacteriz 41.6 41 0.00089 25.6 3.8 31 133-163 16-47 (101)
47 TIGR01082 murC UDP-N-acetylmur 41.3 94 0.002 30.0 7.1 129 16-159 3-134 (448)
48 COG2313 IndA Uncharacterized e 39.9 2.2E+02 0.0048 25.9 8.4 91 19-110 131-226 (310)
49 cd02040 NifH NifH gene encodes 39.7 21 0.00045 31.5 2.2 31 15-47 4-34 (270)
50 cd00537 MTHFR Methylenetetrahy 39.2 77 0.0017 28.4 5.8 74 74-160 17-96 (274)
51 PRK13232 nifH nitrogenase redu 38.7 22 0.00048 31.8 2.2 32 15-48 4-35 (273)
52 PRK10853 putative reductase; P 37.7 24 0.00052 27.8 2.0 52 67-118 6-59 (118)
53 PF13207 AAA_17: AAA domain; P 36.9 24 0.00053 26.8 1.9 26 16-46 3-28 (121)
54 COG0489 Mrp ATPases involved i 36.3 26 0.00055 31.6 2.2 32 17-50 63-94 (265)
55 PF08844 DUF1815: Domain of un 36.2 1.7E+02 0.0037 22.3 6.2 49 140-194 20-69 (105)
56 cd01983 Fer4_NifH The Fer4_Nif 35.8 30 0.00064 24.5 2.1 31 17-49 4-34 (99)
57 PRK12928 lipoyl synthase; Prov 35.1 1.7E+02 0.0037 26.7 7.5 109 36-155 157-276 (290)
58 TIGR02016 BchX chlorophyllide 34.2 30 0.00065 31.7 2.3 36 15-52 3-38 (296)
59 PRK13185 chlL protochlorophyll 34.1 29 0.00062 30.8 2.1 33 14-48 4-36 (270)
60 PF07131 DUF1382: Protein of u 33.9 38 0.00083 23.4 2.2 25 76-100 14-38 (61)
61 PRK09432 metF 5,10-methylenete 33.8 98 0.0021 28.4 5.6 46 102-160 75-120 (296)
62 PRK13236 nitrogenase reductase 33.7 31 0.00066 31.5 2.3 76 14-92 8-93 (296)
63 CHL00072 chlL photochlorophyll 33.6 31 0.00067 31.5 2.3 34 15-50 3-36 (290)
64 COG0761 lytB 4-Hydroxy-3-methy 33.4 1.1E+02 0.0025 28.0 5.8 64 34-97 106-171 (294)
65 TIGR01616 nitro_assoc nitrogen 33.2 27 0.00059 27.9 1.7 55 67-121 7-63 (126)
66 PRK12737 gatY tagatose-bisphos 33.1 49 0.0011 30.3 3.5 35 18-54 180-214 (284)
67 PLN02428 lipoic acid synthase 33.0 2.4E+02 0.0051 26.7 8.1 112 34-155 197-319 (349)
68 COG1936 Predicted nucleotide k 33.0 42 0.00092 28.6 2.8 26 15-46 3-28 (180)
69 COG3804 Uncharacterized conser 32.8 38 0.00082 31.2 2.6 114 17-151 7-124 (350)
70 COG0773 MurC UDP-N-acetylmuram 32.6 3.7E+02 0.0079 26.5 9.5 132 14-159 9-142 (459)
71 COG0647 NagD Predicted sugar p 32.3 2E+02 0.0044 26.1 7.3 128 13-151 11-147 (269)
72 TIGR00017 cmk cytidylate kinas 32.3 3.3E+02 0.0073 23.5 10.3 124 14-160 4-128 (217)
73 PF14207 DpnD-PcfM: DpnD/PcfM- 32.3 48 0.001 22.0 2.4 19 242-260 18-36 (48)
74 PRK09435 membrane ATPase/prote 32.2 94 0.002 29.1 5.3 78 13-92 57-155 (332)
75 PRK12726 flagellar biosynthesi 32.0 2.5E+02 0.0053 27.2 8.1 83 12-98 206-300 (407)
76 TIGR01007 eps_fam capsular exo 32.0 74 0.0016 26.8 4.3 33 13-47 18-51 (204)
77 PF07429 Glyco_transf_56: 4-al 32.0 1.5E+02 0.0033 28.1 6.6 94 36-149 261-356 (360)
78 PF01656 CbiA: CobQ/CobB/MinD/ 31.9 31 0.00067 28.4 1.9 28 19-48 6-33 (195)
79 PRK14722 flhF flagellar biosyn 31.4 4.7E+02 0.01 25.0 11.5 89 13-108 138-240 (374)
80 PF00448 SRP54: SRP54-type pro 31.1 1.8E+02 0.0039 24.8 6.5 131 14-158 3-149 (196)
81 PF00142 Fer4_NifH: 4Fe-4S iro 30.9 29 0.00062 31.6 1.5 36 15-52 3-38 (273)
82 PF14561 TPR_20: Tetratricopep 30.6 1.4E+02 0.003 22.2 5.0 42 229-273 25-72 (90)
83 PF04227 Indigoidine_A: Indigo 30.5 98 0.0021 28.5 4.9 116 18-158 89-220 (293)
84 PRK04531 acetylglutamate kinas 30.4 1.8E+02 0.0038 28.0 6.9 98 38-161 62-174 (398)
85 PRK13235 nifH nitrogenase redu 30.1 37 0.00081 30.3 2.2 32 15-48 4-35 (274)
86 PRK12857 fructose-1,6-bisphosp 30.1 61 0.0013 29.7 3.6 33 21-54 182-214 (284)
87 KOG3347 Predicted nucleotide k 30.1 47 0.001 27.9 2.6 31 15-50 10-40 (176)
88 COG1348 NifH Nitrogenase subun 29.9 64 0.0014 29.0 3.5 61 15-77 4-74 (278)
89 TIGR01281 DPOR_bchL light-inde 29.6 37 0.0008 30.1 2.1 30 17-48 5-34 (268)
90 PF03960 ArsC: ArsC family; I 29.6 35 0.00077 26.1 1.7 90 67-159 2-95 (110)
91 PLN02540 methylenetetrahydrofo 29.5 1.1E+02 0.0023 31.0 5.4 71 77-160 20-96 (565)
92 TIGR03499 FlhF flagellar biosy 29.5 2.9E+02 0.0062 25.0 7.9 67 13-83 195-269 (282)
93 cd04724 Tryptophan_synthase_al 29.4 1.5E+02 0.0033 26.1 6.0 91 66-157 8-110 (242)
94 COG0707 MurG UDP-N-acetylgluco 29.2 1.1E+02 0.0023 29.0 5.2 34 17-56 95-128 (357)
95 PRK07261 topology modulation p 29.1 60 0.0013 26.9 3.2 30 15-49 3-32 (171)
96 cd03035 ArsC_Yffb Arsenate Red 28.7 38 0.00083 25.9 1.7 53 67-119 5-59 (105)
97 cd00550 ArsA_ATPase Oxyanion-t 28.6 36 0.00078 30.3 1.8 42 17-63 5-46 (254)
98 PRK15179 Vi polysaccharide bio 28.4 79 0.0017 32.7 4.4 71 204-278 168-238 (694)
99 PRK08118 topology modulation p 28.3 51 0.0011 27.3 2.6 27 15-46 4-30 (167)
100 cd02036 MinD Bacterial cell di 28.2 44 0.00096 27.1 2.2 30 18-49 6-35 (179)
101 PRK12339 2-phosphoglycerate ki 27.9 49 0.0011 28.4 2.4 32 14-50 5-36 (197)
102 PF03721 UDPG_MGDP_dh_N: UDP-g 27.4 61 0.0013 27.5 3.0 25 15-46 3-27 (185)
103 PLN02645 phosphoglycolate phos 27.4 97 0.0021 28.4 4.5 72 14-85 32-108 (311)
104 PTZ00413 lipoate synthase; Pro 27.4 3.7E+02 0.0079 26.0 8.3 113 33-155 243-367 (398)
105 COG0003 ArsA Predicted ATPase 26.9 53 0.0011 30.7 2.6 45 16-65 6-50 (322)
106 PF02310 B12-binding: B12 bind 26.8 2.8E+02 0.006 20.8 8.2 75 73-163 39-115 (121)
107 COG3448 CBS-domain-containing 26.1 3.4E+02 0.0074 25.4 7.5 89 44-156 186-281 (382)
108 PRK09195 gatY tagatose-bisphos 26.0 75 0.0016 29.1 3.4 33 21-54 182-214 (284)
109 cd03033 ArsC_15kD Arsenate Red 25.9 47 0.001 25.9 1.8 53 67-119 6-60 (113)
110 cd01423 MGS_CPS_I_III Methylgl 25.8 1.6E+02 0.0036 22.5 4.9 53 31-91 15-77 (116)
111 PF08444 Gly_acyl_tr_C: Aralky 24.8 37 0.00081 25.5 1.0 51 40-90 23-79 (89)
112 cd02035 ArsA ArsA ATPase funct 24.7 50 0.0011 28.4 2.0 34 17-52 4-37 (217)
113 PRK14721 flhF flagellar biosyn 24.4 6.6E+02 0.014 24.4 10.7 130 12-158 191-335 (420)
114 TIGR01459 HAD-SF-IIA-hyp4 HAD- 24.0 1.6E+02 0.0035 25.6 5.2 56 14-70 12-67 (242)
115 PRK08610 fructose-bisphosphate 23.9 90 0.002 28.6 3.5 33 21-54 183-215 (286)
116 TIGR03029 EpsG chain length de 23.7 55 0.0012 29.1 2.1 29 18-48 110-138 (274)
117 cd02020 CMPK Cytidine monophos 23.7 88 0.0019 24.3 3.1 30 15-49 2-31 (147)
118 PF13344 Hydrolase_6: Haloacid 23.6 57 0.0012 24.7 1.9 64 46-109 9-79 (101)
119 cd02072 Glm_B12_BD B12 binding 23.6 3.9E+02 0.0084 21.4 9.4 88 33-153 18-111 (128)
120 TIGR00510 lipA lipoate synthas 23.5 2.4E+02 0.0051 26.1 6.2 110 35-155 159-279 (302)
121 COG1703 ArgK Putative periplas 23.5 91 0.002 29.0 3.4 45 12-58 51-95 (323)
122 TIGR01460 HAD-SF-IIA Haloacid 23.5 1.6E+02 0.0036 25.6 5.0 70 14-83 2-77 (236)
123 PF02142 MGS: MGS-like domain 23.4 59 0.0013 24.1 1.9 49 34-90 5-65 (95)
124 KOG1116 Sphingosine kinase, in 23.2 1.3E+02 0.0027 30.5 4.5 52 112-163 198-249 (579)
125 TIGR00167 cbbA ketose-bisphosp 22.9 1E+02 0.0022 28.3 3.7 33 21-54 185-218 (288)
126 cd01444 GlpE_ST GlpE sulfurtra 22.7 2.9E+02 0.0063 19.6 6.0 22 138-159 68-89 (96)
127 COG3640 CooC CO dehydrogenase 22.6 60 0.0013 29.2 2.0 31 15-47 3-34 (255)
128 TIGR01452 PGP_euk phosphoglyco 22.5 1.3E+02 0.0029 26.9 4.3 70 14-83 6-80 (279)
129 PRK10037 cell division protein 22.2 50 0.0011 29.0 1.5 26 21-48 11-36 (250)
130 PRK08356 hypothetical protein; 22.1 93 0.002 26.2 3.1 33 14-52 7-39 (195)
131 COG0771 MurD UDP-N-acetylmuram 22.1 67 0.0015 31.5 2.4 36 17-54 113-148 (448)
132 PF03814 KdpA: Potassium-trans 21.9 32 0.0007 34.4 0.2 66 27-96 174-239 (552)
133 TIGR01858 tag_bisphos_ald clas 21.7 1E+02 0.0023 28.1 3.5 33 21-54 180-212 (282)
134 COG1049 AcnB Aconitase B [Ener 21.6 51 0.0011 33.5 1.5 25 15-39 480-511 (852)
135 PF01116 F_bP_aldolase: Fructo 21.6 76 0.0017 29.1 2.6 36 18-54 180-217 (287)
136 COG0654 UbiH 2-polyprenyl-6-me 21.6 1.2E+02 0.0026 28.4 4.0 39 30-68 13-60 (387)
137 PRK05835 fructose-bisphosphate 21.6 1.1E+02 0.0023 28.5 3.5 31 24-55 187-217 (307)
138 PRK07709 fructose-bisphosphate 21.5 1.2E+02 0.0026 27.8 3.8 33 21-54 183-215 (285)
139 COG0493 GltD NADPH-dependent g 21.5 7.7E+02 0.017 24.2 9.6 133 13-157 124-292 (457)
140 PF00690 Cation_ATPase_N: Cati 21.4 1.4E+02 0.0031 20.5 3.4 37 57-93 4-42 (69)
141 TIGR00680 kdpA K+-transporting 21.4 37 0.00079 33.9 0.5 66 27-96 182-247 (563)
142 PHA02518 ParA-like protein; Pr 21.2 60 0.0013 27.2 1.7 29 20-50 9-37 (211)
143 KOG3220 Similar to bacterial d 21.0 1.3E+02 0.0028 26.5 3.6 96 47-158 6-113 (225)
144 smart00851 MGS MGS-like domain 21.0 2.7E+02 0.0058 20.2 5.1 48 34-89 5-59 (90)
145 TIGR03371 cellulose_yhjQ cellu 20.9 57 0.0012 28.2 1.6 31 19-51 9-39 (246)
146 TIGR03569 NeuB_NnaB N-acetylne 20.9 3.3E+02 0.0072 25.5 6.7 105 31-152 98-218 (329)
147 PRK01184 hypothetical protein; 20.9 3.3E+02 0.0072 22.2 6.2 15 243-257 163-177 (184)
148 PF07521 RMMBL: RNA-metabolisi 20.7 67 0.0015 20.3 1.5 27 133-159 14-40 (43)
149 PF06564 YhjQ: YhjQ protein; 20.6 73 0.0016 28.5 2.2 31 15-47 4-35 (243)
150 PF00538 Linker_histone: linke 20.5 85 0.0018 22.4 2.2 19 134-152 1-19 (77)
151 cd03032 ArsC_Spx Arsenate Redu 20.3 82 0.0018 24.3 2.2 56 67-122 6-65 (115)
152 COG3529 Predicted nucleic-acid 20.3 54 0.0012 22.9 1.0 13 125-137 54-66 (66)
153 PRK11670 antiporter inner memb 20.2 64 0.0014 30.6 1.8 31 18-50 114-144 (369)
154 TIGR01359 UMP_CMP_kin_fam UMP- 20.1 1.1E+02 0.0024 25.1 3.1 28 17-49 4-31 (183)
155 PRK00771 signal recognition pa 20.0 3.4E+02 0.0074 26.4 6.8 81 13-97 96-189 (437)
No 1
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.1e-80 Score=567.22 Aligned_cols=274 Identities=53% Similarity=0.822 Sum_probs=264.8
Q ss_pred CccccccccCCCC-cceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHH
Q 023546 1 MIKYATKVEGLGD-AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR 79 (281)
Q Consensus 1 ~~~~~~~~~~~~~-~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~~s~~~a~~ 79 (281)
|++++.+++.+.. .+|+|||||||.+||||||++|+++|++|+||+|||||++|||+||+|+||+|||+++.+++++++
T Consensus 63 m~~~~~~~~~p~~~~vDi~GTGGDg~~T~NiSt~aA~v~A~~Gv~VaKHGnrs~sSksGsaDvleaLGv~l~~~~e~~~~ 142 (338)
T COG0547 63 MREHAPKLPVPAADPVDIVGTGGDGANTINISTAAAIVAAAAGVPVAKHGNRSVSSKSGSADVLEALGVNLELSPEQAAR 142 (338)
T ss_pred HHHhcccCCCCCCCCCCeecCCCCCCCcccchHHHHHHHHhCCCcEEeECCCCCCCCCcHHHHHHHcCCCCCCCHHHHHH
Confidence 5677777777543 499999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCeEEEeCCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEec
Q 023546 80 CVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS 159 (281)
Q Consensus 80 ~l~~~g~~fl~~~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~G 159 (281)
+|++.||+|||+|.|||+|++++++|++||+||+||++|||+||+++++||+|||||+|.++++++++.+|.++++||||
T Consensus 143 ~l~~~g~~FlfAp~~hp~~k~v~~vR~~LG~RTifN~LGPL~NPa~~~~qliGV~~p~~~~~~A~~l~~LG~~ralvV~G 222 (338)
T COG0547 143 ALEETGIGFLFAPAYHPAMKHVAPVRKELGVRTIFNLLGPLLNPARAKLQLIGVYHPELVELLAEALRLLGVERALVVHG 222 (338)
T ss_pred HHHhcCeEEEEccccCHHHHHHHHHHHHcCCCchHHhhccccCCCCCCceEEEEeCHHHHHHHHHHHHHhCcceEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCccccCcCCceEEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHH
Q 023546 160 -EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIADALILNAAAALLV 238 (281)
Q Consensus 160 -eG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~~~~~~~vl~G~~~~~~~~v~~naa~~L~~ 238 (281)
+|+||++|.+.|.|+++++|++++++++|+|||++.++++++++.++++|++++++||+|+.++++|+|++|+|++||+
T Consensus 223 ~~GlDE~~~~~~t~v~~l~~g~i~~~~l~pe~~Gl~~~~~~~l~~~~~~ena~~~~~vL~G~~~~~~d~v~~Naa~~L~~ 302 (338)
T COG0547 223 LEGLDEVTPTGTTLVAELKDGEIREYTLTPEDFGLERAPLEDLPGGDPEENAEILRAVLAGEEGPARDAVALNAAAALYA 302 (338)
T ss_pred CCCcccccCCCCceEEEEcCCceEEEEeCHHhcCCCCCchhhcCCCCHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999899999999999999998889999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhCC
Q 023546 239 SCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKG 274 (281)
Q Consensus 239 ~G~~~~~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~ 274 (281)
.|+++|++||+++|+++|+||+|+++|++|+.++++
T Consensus 303 ~g~a~~l~eg~~~A~~~i~sG~a~~~l~~l~~~~~~ 338 (338)
T COG0547 303 AGKAESLKEGIALALEAIDSGAALEKLEELVAFSKS 338 (338)
T ss_pred cCccCCHHHHHHHHHHHHhCcHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999998763
No 2
>PLN02641 anthranilate phosphoribosyltransferase
Probab=100.00 E-value=7.4e-78 Score=557.47 Aligned_cols=275 Identities=82% Similarity=1.205 Sum_probs=264.7
Q ss_pred CccccccccCCCCcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHHH
Q 023546 1 MIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRC 80 (281)
Q Consensus 1 ~~~~~~~~~~~~~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~~s~~~a~~~ 80 (281)
|++++.+++...+.+|+|||||||++||||||++|+++|++|+||+|||||++|+++||+|+||+|||+++.+++++.++
T Consensus 62 ~~~~~~~~~~~~~~~D~~gtGGdg~~t~nist~aa~v~A~~G~~V~kHGnr~~ss~~GsaDvLeaLGi~~~~~~~~~~~~ 141 (343)
T PLN02641 62 MIKRARKVDGLVDAVDIVGTGGDGANTVNISTGSSILAAACGAKVAKQGNRSSSSACGSADVLEALGVAIDLGPEGVKRC 141 (343)
T ss_pred HHHhCCCCCCCCCCCceeCCCCCCCCccccHHHHHHHHHhCCCeEEEeCCCCCCCccCHHHHHHHcCCCCCCCHHHHHHH
Confidence 45666666644558999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCeEEEeCCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEecC
Q 023546 81 VDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSE 160 (281)
Q Consensus 81 l~~~g~~fl~~~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~Ge 160 (281)
|+++||+|+++|.|||+|++++++|++||+||+||+++||+||+++++||+|||||+|.++|+++++.+|.++++||||+
T Consensus 142 l~~~g~~fl~a~~~hPa~~~~~~~R~~LG~RT~fN~lgpL~NPa~~~~~v~GV~~~~~~~~~a~al~~lG~~~alVv~G~ 221 (343)
T PLN02641 142 VEEVGIGFMMAPKYHPAMKIVAPVRKKLKVKTVFNILGPMLNPARVPHAVVGVYHESLVEKMAKALQRFGMKRALVVHSE 221 (343)
T ss_pred HHhcCcEEEechhhCHHHHHHHHHHHHhCCCcHHHHHHHhcCCCCCCceEEeeeCHHHHHHHHHHHHHcCCCeEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCcCCceEEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHHcc
Q 023546 161 GLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIADALILNAAAALLVSC 240 (281)
Q Consensus 161 G~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~~~~~~~vl~G~~~~~~~~v~~naa~~L~~~G 240 (281)
|+||++|.++|+++++.+|+++++.|+|+|||++.++++++.++++++|+++++++|+|+.++++|+|++|||++||++|
T Consensus 222 G~DEis~~g~t~v~~~~~g~i~~~~~~p~d~Gl~~~~~~~l~~~~~~~na~~~~~vL~G~~~~~~d~v~lNaa~~L~~~g 301 (343)
T PLN02641 222 GLDEMSPLGPGDVLEVTPEKIEEFSFDPLDFGIPRCTLEDLRGGDPDYNAKVLRDVLSGEKGAIADALILNAAAALLVSG 301 (343)
T ss_pred CCCccccCcceEEEEEeCCceEEEEeCHHHcCCCcCCHHhcCCCCHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999987899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhCCC
Q 023546 241 KVNTLAEGVALAREIQLSGKALNTLDLWIEVSKGA 275 (281)
Q Consensus 241 ~~~~~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~~ 275 (281)
+++|++||+++|+++|+||+|+++|++|++.+++.
T Consensus 302 ~~~sl~eg~~~A~~~i~sG~a~~~l~~~~~~~~~~ 336 (343)
T PLN02641 302 LAKTLAEGVALARETQESGKAIKTLDSWIKISQEL 336 (343)
T ss_pred CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999987643
No 3
>PRK07394 hypothetical protein; Provisional
Probab=100.00 E-value=3.1e-75 Score=540.91 Aligned_cols=266 Identities=23% Similarity=0.291 Sum_probs=252.7
Q ss_pred CccccccccCCC--CcceEecCCCCCC-CCccchHHHHHHHHcCCCcEEeeCCCCCCCccc--HHHHHHHcCCCCCC-CH
Q 023546 1 MIKYATKVEGLG--DAVDIVGTGGDGA-NTVNISTGASILAAACGAKVAKQGSRSSSSACG--SADVLEALGVVIDL-DP 74 (281)
Q Consensus 1 ~~~~~~~~~~~~--~~~Di~gtggdG~-~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~g--s~dvLe~LGi~~~~-s~ 74 (281)
|++++.+++.+. .++|+|||||||+ +||||||++|+++|++|+||+|||||++||++| |+|+||+|||+++. ++
T Consensus 68 ~~~~~~~~~~~~~~~~~d~~GtggDG~~~t~NiSt~aA~v~A~~Gv~V~kHGnr~~ssk~GvtsaDvLe~LGv~~~~~~~ 147 (342)
T PRK07394 68 YDELGPKLQSPSNQRPPIVFGMPYDGRSRTAPIYPLTALILAAAGQPVVLHGGDRMPTKYGVPLVELWQGLGVDLTGLSL 147 (342)
T ss_pred HHHhCCCCCCCCCCCceeEEeCCCCCCCCCcccHHHHHHHHHHCCCeEEEECCCCCCCCCCchHHHHHHHCCCCCCCCCH
Confidence 456776765432 4789999999997 799999999999999999999999999999999 99999999999998 99
Q ss_pred HHHHHHHHHcCeEEEeCCccChhhhchHHHHhhhCCCChhhhhhhccCC-CCCCceEEeeeChhhHHHHHHHHHHcCCCe
Q 023546 75 EGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNP-ACVPFAVVGVYNENLVLKMANALQRFGLKR 153 (281)
Q Consensus 75 ~~a~~~l~~~g~~fl~~~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP-~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~ 153 (281)
+++.++|+++||+|+++|.|||+|++++++|++||+||+||++|||+|| +++++||+|||||+|.++|+++++.+|.++
T Consensus 148 ~~~~~~l~~~g~~Fl~ap~~hP~m~~~~~vR~~Lg~RT~fN~lgpL~NP~a~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~ 227 (342)
T PRK07394 148 EQVQEGFEQTGLAFIYQPDHFPLAESLIPYRDEIGKRPPLATLELIWTPHQGDHHLVSGFVHPPTEARAWEALELRGETN 227 (342)
T ss_pred HHHHHHHHHcCceeeechhhCHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCCCCceEEEeeCHHHHHHHHHHHHHcCCCe
Confidence 9999999999999999999999999999999999999999999999999 688999999999999999999999999999
Q ss_pred EEEEec-CCccccCcCCceEEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCcchHHHHHHHHH
Q 023546 154 ALVVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIADALILNA 232 (281)
Q Consensus 154 ~lvv~G-eG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~~~~~~~vl~G~~~~~~~~v~~na 232 (281)
++|||| ||+||+++.++|.++++++|+++++.++|+|||++.+ ++++.++++|+++++++|+|+.++++|+|++||
T Consensus 228 ~~vv~G~~G~dE~s~~~~t~v~~~~~g~i~~~~i~p~d~G~~~~---~l~~~~~~~na~~~~~vl~G~~~~~~~~v~lNa 304 (342)
T PRK07394 228 FTTVKGLEGSCDLPISRTAIIGRVQNGHFERLILHPRDYGCGGK---DVPWESTEEWLEQAQAALNGEPGPLTQALIWNG 304 (342)
T ss_pred EEEEEcCCCceeccCCCCeEEEEEcCCeEEEEEECHHHcCCCcc---cCCCCCHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 999999 9999999999999999999999999999999999865 457789999999999999999888899999999
Q ss_pred HHHHHHccCCCCHHHHHHHHHHHHHccHHHHHHHHHH
Q 023546 233 AAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWI 269 (281)
Q Consensus 233 a~~L~~~G~~~~~~eg~~~A~~~l~sG~a~~~l~~~~ 269 (281)
|++||++|+++|++||+++|+++|+||+|+++|++|+
T Consensus 305 a~~L~~~g~~~s~~eg~~~A~~~i~sG~a~~~l~~~~ 341 (342)
T PRK07394 305 GFYLWRAGISSSLEEGIEKAEELLNSGKALQKLQQLI 341 (342)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence 9999999999999999999999999999999999996
No 4
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=100.00 E-value=5.9e-73 Score=524.74 Aligned_cols=270 Identities=54% Similarity=0.845 Sum_probs=258.3
Q ss_pred CccccccccCC--CCcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHH
Q 023546 1 MIKYATKVEGL--GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVR 78 (281)
Q Consensus 1 ~~~~~~~~~~~--~~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~~s~~~a~ 78 (281)
|++++.+++.. ...+|+|||||||++||||||++|+++|++|+||+|||++++++++|++|+||+|||+++.++++++
T Consensus 56 ~~~~~~~~~~~~~~~~iD~~gtggdg~~t~nist~~a~vlA~~G~~V~kHG~r~~~s~~Gs~d~le~LGi~~~~s~~~~~ 135 (330)
T TIGR01245 56 MREHAVKVPGRPVEDLVDIVGTGGDGANTINISTASAFVAAAAGVKVAKHGNRSVSSKSGSADVLEALGVNLDLGPEKVA 135 (330)
T ss_pred HHHhCCCCCCccCCCcccccCCCCCCCCccccHHHHHHHHHhCCCEEEEeCCCCCCCCccHHHHHHHcCCCCCCCHHHHH
Confidence 35566555542 4579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCeEEEeCCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEe
Q 023546 79 RCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH 158 (281)
Q Consensus 79 ~~l~~~g~~fl~~~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~ 158 (281)
++|+++||+|+++|.|||+|++++++|++||+||+|||++||+||++++++|+|||||+|.++|+++++.+|.++++||+
T Consensus 136 ~~l~~~g~~f~~~~~~~P~~~~l~~lR~~lg~rT~~N~lgpL~NP~~~~~~v~Gv~~~~~~~~~a~~~~~lg~~~~~vv~ 215 (330)
T TIGR01245 136 RSLEETGIGFLFAPLYHPAMKHVAPVRRELGVRTVFNLLGPLTNPARPKYQVIGVYDPDLVEVMAEALKNLGVKRALVVH 215 (330)
T ss_pred HHHHHhCcEEeechhhCHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCCCCEEEcccCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-CCccccCcCCceEEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCc-chHHHHHHHHHHHHH
Q 023546 159 S-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GAIADALILNAAAAL 236 (281)
Q Consensus 159 G-eG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~~~~~~~vl~G~~-~~~~~~v~~naa~~L 236 (281)
| ||+||++|.++|+++++++|++.++.|+|+|||++.+++++++++++++++++++++|+|+. +++.|+|++|+|++|
T Consensus 216 G~~G~dE~s~~~~t~v~~~~~g~~~~~~i~p~~~g~~~~~~~~~~~~~~~~~a~~~~~~l~G~~~~~~~~~v~lnaA~~L 295 (330)
T TIGR01245 216 GDDGLDEISLTGPTTVAELKDGEIREYTLDPEDFGLPRAPLEELAGGSPEENAEILRDILRGKGSGAKRDIVALNAAAAL 295 (330)
T ss_pred CCCCceeecCCCcEEEEEEECCEEEEEeCCHHHcCCCcCCHhhcCCCCHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHH
Confidence 9 99999999999999999999999999999999999887888888899999999999999995 789999999999999
Q ss_pred HHccCCCCHHHHHHHHHHHHHccHHHHHHHHHHH
Q 023546 237 LVSCKVNTLAEGVALAREIQLSGKALNTLDLWIE 270 (281)
Q Consensus 237 ~~~G~~~~~~eg~~~A~~~l~sG~a~~~l~~~~~ 270 (281)
|++|+++|++||+++|+++|+||+|+++|++|++
T Consensus 296 ~~~g~~~s~~e~~~~a~~~i~sG~a~~~l~~~~~ 329 (330)
T TIGR01245 296 YVAGRASDLKEGVELALEAIDSGAAAEKLEELVA 329 (330)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHh
Confidence 9999999999999999999999999999999986
No 5
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.9e-72 Score=523.38 Aligned_cols=275 Identities=54% Similarity=0.838 Sum_probs=261.9
Q ss_pred CccccccccCCCCcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHHH
Q 023546 1 MIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRC 80 (281)
Q Consensus 1 ~~~~~~~~~~~~~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~~s~~~a~~~ 80 (281)
|++++.+++.+++.+|+|||||||++||||||++|+++|++|+||+|||++++++++|++|+||+||++++.+++++.++
T Consensus 62 ~~~~~~~~~~~~~~iDi~gtggdg~~t~nis~~~a~vlA~~G~~V~kHG~~~~~s~~GsadvLe~lGi~~~~~~~~~~~~ 141 (339)
T PRK00188 62 MREHAVPVPDPDDAVDIVGTGGDGANTFNISTAAAFVAAAAGVKVAKHGNRSVSSKSGSADVLEALGVNLDLSPEQVARC 141 (339)
T ss_pred HHHhCCcCCCCCCCCcccCCCCCCCCccchHHHHHHHHHhCCCEEEEECCCCCCCCcCHHHHHHHcCCCCCCCHHHHHHH
Confidence 35566656554468999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCeEEEeCCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEec-
Q 023546 81 VDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS- 159 (281)
Q Consensus 81 l~~~g~~fl~~~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~G- 159 (281)
|+++||+|+++|.|||+|++++++|++||+||+|||++||+||++++++|+|||||+|.++|+++++.+|+++++||||
T Consensus 142 l~~~g~~fl~a~~~~P~l~~l~~lR~~Lg~Rt~fN~l~~L~NP~~~~~~v~Gv~h~~~~~~~a~~l~~lg~~~~~vv~G~ 221 (339)
T PRK00188 142 LEEVGIGFLFAPLYHPAMKHVAPVRKELGIRTIFNLLGPLTNPARPKRQLIGVYSPDLLEPMAEVLKRLGSKRALVVHGS 221 (339)
T ss_pred HHHcCcEEeeCcccCHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCCCCEEEeecCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCcCCceEEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCC-cchHHHHHHHHHHHHHHH
Q 023546 160 EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGE-RGAIADALILNAAAALLV 238 (281)
Q Consensus 160 eG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~~~~~~~vl~G~-~~~~~~~v~~naa~~L~~ 238 (281)
||+||++|.++|+++++++|++.++.++|++||++..+.+++...++++|+++++++|+|+ .+++.+.|++|+|++||+
T Consensus 222 ~G~dE~~~~~~t~v~~~~~g~~~~~~i~p~~~Gl~~~~~~~~~~~~~~~~a~~~~~vl~G~~~~~~~~~v~lnaA~~L~~ 301 (339)
T PRK00188 222 DGLDEISLTGPTTVAELKDGEIREYTLTPEDFGLPRAPLEDLRGGDPEENAAILRAVLQGKGPGAARDAVLLNAAAALYV 301 (339)
T ss_pred CCceeecCCCCEEEEEEcCCEEEEEEECHHHcCCCcCCHHhcCCCCHHHHHHHHHHHHCCCCCCchHHHHHHHHHHHHHH
Confidence 9999999999999999999998899999999999988777777889999999999999996 578999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhCCC
Q 023546 239 SCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKGA 275 (281)
Q Consensus 239 ~G~~~~~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~~ 275 (281)
+|.++|++||+++|+++|+||+|+++|++|++.++++
T Consensus 302 ~g~~~s~~e~~~~A~~~i~sG~a~~~l~~~~~~~~~~ 338 (339)
T PRK00188 302 AGKADDLKEGVELAREAIDSGAALAKLEELVAFSQEL 338 (339)
T ss_pred cCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999988764
No 6
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=3.4e-72 Score=548.97 Aligned_cols=274 Identities=41% Similarity=0.677 Sum_probs=263.1
Q ss_pred CccccccccCC-CCcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHH
Q 023546 1 MIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR 79 (281)
Q Consensus 1 ~~~~~~~~~~~-~~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~~s~~~a~~ 79 (281)
|++++.+++.+ ++.+|+|||||||++||||||++|+++|++|+||+|||||++|+++||+|+||+||++++.+++++.+
T Consensus 254 ~~~~~~~~~~~~~~~~D~~gtggdg~~t~nist~~a~v~A~~G~~V~kHG~r~~ss~~Gsadvle~lGv~~~~~~~~~~~ 333 (534)
T PRK14607 254 MREKSRHIPAPSPRTVDTCGTGGDGFGTFNISTTSAFVVAAAGVPVAKHGNRAVSSKSGSADVLEALGVKLEMTPEEAAS 333 (534)
T ss_pred HHHhCCcCCCCCCCceEEccCCCCCCCccccHHHHHHHHHhCCCcEEEECCCCCCCCccHHHHHHHcCCCCCCCHHHHHH
Confidence 46677767654 34799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCeEEEeCCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEec
Q 023546 80 CVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS 159 (281)
Q Consensus 80 ~l~~~g~~fl~~~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~G 159 (281)
+|++.||+|+++|.|||+|++++++|++||+||+||+++||+||++++++|+|||||+|.++|+++++.+|.++++||||
T Consensus 334 ~l~~~g~~fl~ap~~~p~l~~~~~~R~~Lg~rTifN~lgpL~NP~~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~~~vv~G 413 (534)
T PRK14607 334 VLRETGFSFLFAPLFHPAMKHAAPARRELGIRTAFNLLGPLTNPARVKYQIVGVFDPSYAEPLAQALQRLGTERAMVVSG 413 (534)
T ss_pred HHHHhCcEEeeccccCHHHHHHHHHHHHhCCCcHHHhHHhccCCCCCCcEEEeeCCHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCccccCcCCceEEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCc-chHHHHHHHHHHHHHH
Q 023546 160 -EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GAIADALILNAAAALL 237 (281)
Q Consensus 160 -eG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~~~~~~~vl~G~~-~~~~~~v~~naa~~L~ 237 (281)
||+||+||.++|+++++++|++.++.|+|++||++.++.+++.++++++|+++++++|+|+. ++++|+|++|||++||
T Consensus 414 ~~G~dE~s~~~~t~v~~~~~g~i~~~~i~p~~~Gl~~~~~~~~~~~~~~~na~~~~~vl~G~~~~~~~~~v~lnaA~~L~ 493 (534)
T PRK14607 414 IDGYDEISTCGPTQILELEDGEIVTYTFDPEELGLKRVDPEELKGGDPQENYRLAEDVLKGEPRRPQRDAVALNAGAALY 493 (534)
T ss_pred CCCCccccCCCceEEEEEcCCEEEEEEEcHHHCCCCCCCHHHcCCCCHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988888888899999999999999995 7899999999999999
Q ss_pred HccCCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhCC
Q 023546 238 VSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKG 274 (281)
Q Consensus 238 ~~G~~~~~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~ 274 (281)
++|+++|++||+++|+++|+||+|+++|++|++.++.
T Consensus 494 ~~g~~~s~~eg~~~a~~~i~sG~a~~~l~~~~~~~~~ 530 (534)
T PRK14607 494 LVGEADSIKEGVGKALDLIDDGRAYKKLEEVMDLSKT 530 (534)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998754
No 7
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=8.6e-72 Score=543.69 Aligned_cols=270 Identities=38% Similarity=0.654 Sum_probs=257.6
Q ss_pred CccccccccCC-CCcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHH
Q 023546 1 MIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR 79 (281)
Q Consensus 1 ~~~~~~~~~~~-~~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~~s~~~a~~ 79 (281)
|++++.+++.. ...+|+|||||||++||||||++|+++|++|+||+|||||++|+++|++|+||+|||+++.+++++.+
T Consensus 259 ~~~~~~~~~~~~~~~iD~~gtGgdg~~t~nist~aa~v~A~~Gv~V~kHG~r~~ss~~GsadvlealGi~~~~~~~~~~~ 338 (531)
T PRK09522 259 LLENAAPFPRPDYLFADIVGTGGDGSNSINISTASAFVAAACGLKVAKHGNRSVSSKSGSSDLLAAFGINLDMNADKSRQ 338 (531)
T ss_pred HHHhCCCCCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhCCCcEEEeCCCCCCCCccHHHHHHHcCCCCCCCHHHHHH
Confidence 45666666543 34799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCeEEEeCCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEec
Q 023546 80 CVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS 159 (281)
Q Consensus 80 ~l~~~g~~fl~~~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~G 159 (281)
+|+++||+|+++|.|||+|++++++|++||+||+||++|||+||+++++||+|||||+|.++|+++++.+|.++++||||
T Consensus 339 ~l~~~g~~fl~ap~~hpam~~~~~~R~~Lg~rT~fN~lgpL~NPa~~~~~v~Gv~~~~~~~~~a~~l~~lG~~~~~vv~G 418 (531)
T PRK09522 339 ALDELGVCFLFAPKYHTGFRHAMPVRQQLKTRTLFNVLGPLINPAHPPLALIGVYSPELVLPIAETLRVLGYQRAAVVHS 418 (531)
T ss_pred HHHHhCcEEEEhhHhCHHHHHHHHHHHHhCCCcHHHHHHHhcCCCCCCcEEEEeeCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCcCCceEEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCcc-hHHHHHHHHHHHHHHH
Q 023546 160 EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERG-AIADALILNAAAALLV 238 (281)
Q Consensus 160 eG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~~~~~~~vl~G~~~-~~~~~v~~naa~~L~~ 238 (281)
+|+||+|+.++|+|+++++|++++++|+|+|||++.++++++.++++++|+++++++|+|+.. ...++|++|||++||+
T Consensus 419 ~G~DEis~~~~t~v~~~~~g~i~~~~~~P~d~Gl~~~~~~~i~g~~~~~na~~~~~vl~G~~~~~~~~~v~~naa~~l~~ 498 (531)
T PRK09522 419 GGMDEVSLHAPTIVAELHDGEIKSYQLTAEDFGLTPYHQEQLAGGTPEENRDILTRLLQGKGDAAHEAAVAANVAMLMRL 498 (531)
T ss_pred CCccccCCCCceEEEEEcCCeEEEEEECHHHcCCCCCCHHHhcCCCHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999989999999999999999953 4568999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHccHHHHHHHHHHHH
Q 023546 239 SCKVNTLAEGVALAREIQLSGKALNTLDLWIEV 271 (281)
Q Consensus 239 ~G~~~~~~eg~~~A~~~l~sG~a~~~l~~~~~~ 271 (281)
.|. +|++||+++|+++|+||+|+++|++|++.
T Consensus 499 ~g~-~~l~~g~~~a~~~i~sG~a~~~l~~l~~~ 530 (531)
T PRK09522 499 HGH-EDLQANAQTVLEVLRSGSAYDRVTALAAR 530 (531)
T ss_pred cCC-CCHHHHHHHHHHHHhCCHHHHHHHHHHhc
Confidence 996 89999999999999999999999999863
No 8
>PF00591 Glycos_transf_3: Glycosyl transferase family, a/b domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR000312 The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1V8G_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 3H5Q_A 1KHD_A 1KGZ_B 1AZY_A 1OTP_A ....
Probab=100.00 E-value=6.3e-73 Score=507.38 Aligned_cols=250 Identities=52% Similarity=0.817 Sum_probs=237.4
Q ss_pred CcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHHHHHHcCeEEEeCC
Q 023546 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMST 92 (281)
Q Consensus 13 ~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~~s~~~a~~~l~~~g~~fl~~~ 92 (281)
+++|+|||||||.+||||||++|+++|++|+||+|||+|++++++|++|+||+||+++++++++++++|+++||+|+++|
T Consensus 2 ~~~D~~gTGGd~~~t~niSt~~a~vlAa~G~~V~kHG~r~~~~~~Gs~dvLe~LGv~~~~~~~~~~~~l~~~g~~fl~~~ 81 (252)
T PF00591_consen 2 PVVDICGTGGDGDKTFNISTAAAIVLAAAGVPVAKHGNRGVTSKSGSADVLEALGVPIDLSPEEAQAQLEETGIAFLFAP 81 (252)
T ss_dssp TEEEEEESSCSSSTBHHHHHHHHHHHHHTTSEEEEEEESGCTTSSSHHHHHHHSTB-TT--HHHHHHHHHHHSEEEEEHH
T ss_pred CceEEecCCCCCCCceehHHHHHHHHHccCCcEecccCCCccccccHHHHHHhcCCCcCCCHHHHHHHhhccCeEEecch
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEecCCccccCcCCceE
Q 023546 93 KYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGL 172 (281)
Q Consensus 93 ~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~GeG~dE~s~~~~t~ 172 (281)
.|||+|++++++|++||+||+||+++||+||++++++|+|||||+|.++|+++++.+|+++++||||||+||+++.++|+
T Consensus 82 ~~~p~~~~l~~~R~~lg~rT~~N~l~pL~nP~~~~~~v~Gv~~~~~~~~~~~~~~~lg~~~~~vv~G~G~dE~~~~~~t~ 161 (252)
T PF00591_consen 82 NFHPALKRLAPVRRELGIRTVFNTLGPLLNPANAKHQVIGVFHPEYAELMAEALRDLGYGRALVVKGEGSDEISPLGPTR 161 (252)
T ss_dssp HHSGGHHHHHHHHHHHTS--SHHHHGHHHHTT--SEEEEEHSCHHHHHHHHHHHCCETESEEEEEEETTBSSHHHSSHEE
T ss_pred hcCcchHHHHHHHHHcCCCCHHHhhhhhcCCcCCCcEEEEEeCHHHHHHHHHHHHhCCCceEEEEecCCcchhhhccCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCcchH-HHHHHHHHHHHHHHccCCCCHHHHHHH
Q 023546 173 ILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAI-ADALILNAAAALLVSCKVNTLAEGVAL 251 (281)
Q Consensus 173 v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~~~~~~~vl~G~~~~~-~~~v~~naa~~L~~~G~~~~~~eg~~~ 251 (281)
++++++|++.++.++|++||++..+.+++...++++++++++++|+|+.+++ +|+|++|||++||++|+++|++||+++
T Consensus 162 v~~~~~g~~~~~~l~p~d~gl~~~~~~~l~~~~~~e~~~~~~~~L~G~~~~~~~d~v~~nAa~~L~~~g~~~s~~eg~~~ 241 (252)
T PF00591_consen 162 VYELKNGEITEYELDPEDFGLKRAPLEELEGGDPEENARILRAVLAGEEDPAHRDAVLLNAAAALYVAGKASSLEEGVEK 241 (252)
T ss_dssp EEEHHTTEEEEEEEEEGCCTSSSEEGGGGBHSSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSSSSHHHHHHH
T ss_pred EEeecCCceeEEecCHhhcCCCCCChHHhcCCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9999999999999999999999888888888899999999999999998776 899999999999999999999999999
Q ss_pred HHHHHHccHHH
Q 023546 252 AREIQLSGKAL 262 (281)
Q Consensus 252 A~~~l~sG~a~ 262 (281)
|+++|+||+|+
T Consensus 242 a~e~i~sG~Al 252 (252)
T PF00591_consen 242 AREAIDSGKAL 252 (252)
T ss_dssp HHHHHHHTHHH
T ss_pred HHHHHHcCCCC
Confidence 99999999996
No 9
>PRK08136 glycosyl transferase family protein; Provisional
Probab=100.00 E-value=1.1e-66 Score=477.90 Aligned_cols=244 Identities=19% Similarity=0.232 Sum_probs=228.4
Q ss_pred CccccccccCCC---CcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHH
Q 023546 1 MIKYATKVEGLG---DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGV 77 (281)
Q Consensus 1 ~~~~~~~~~~~~---~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~~s~~~a 77 (281)
|++++.+++.+. ..+|+||||||++ ||||||++|+++|++|+||+||||+++|+|+||+|+||+|||+++.+++++
T Consensus 66 ~~~~~~~~~~~~~~~~~iD~~gtgGd~~-t~nist~aA~vlA~~G~~V~kHGnr~vssk~gsadvleaLGi~~~~~~~~~ 144 (317)
T PRK08136 66 MQAHTIPLTPPAGRPMPVVIPSYNGARK-QANLTPLLALLLAREGVPVLVHGVSEDPTRVTSAEIFEALGIPPTLHADQA 144 (317)
T ss_pred HHHhCCcCCCCCCCCceEEeCCCCCCCC-CcChHHHHHHHHHHCCCeEEEECCCCCCCcccHHHHHHHcCCCCCCCHHHH
Confidence 456777665432 2699999999965 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCeEEEeCCccChhhhchHHHHhhhCCCChhhhhhhccCC--CCCCceEEeeeChhhHHHHHHHHHHcCCCeEE
Q 023546 78 RRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNP--ACVPFAVVGVYNENLVLKMANALQRFGLKRAL 155 (281)
Q Consensus 78 ~~~l~~~g~~fl~~~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP--~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~l 155 (281)
+++|++.||+|+++|.|||+|+++.++|++||+||+|||+|||+|| +++++||+|||||+|.++|+++++.+|. +++
T Consensus 145 ~~~l~~~g~~fl~ap~~hPa~~~~~~vR~~LG~RT~fN~lgpL~NP~~a~~~~~v~Gv~~~~~~~~~a~~l~~lg~-~al 223 (317)
T PRK08136 145 QAKLAEGQPAFIPVGVLCPPLARLLALRWRMGVRNSAHTLAKLATPFAEGAALRLSSYTHPEYRDRLAEFFSDIGA-RAL 223 (317)
T ss_pred HHHHHhcCeEEEEhHHhCHHHHHHHHHHHHhCCCCHHHHHHHhcCccccCCCeEEEeeeChHHHHHHHHHHHHcCC-CEE
Confidence 9999999999999999999999999999999999999999999999 6999999999999999999999999998 999
Q ss_pred EEec-CCccccCcCCceEEEEEeCCeEEEEEEccCCCCCCCCCCCCC-CCCChHHHHHHHHHHHCCCcchHHHHHHHHHH
Q 023546 156 VVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESL-QGGGPAYNAEVLRRVLSGERGAIADALILNAA 233 (281)
Q Consensus 156 vv~G-eG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~-~~~~~~~~~~~~~~vl~G~~~~~~~~v~~naa 233 (281)
|||| ||+||++|+++|+|+++++|+++ +.++|+++|++.++ ++ .++++++|++++++||+|+. +.+|+|++|||
T Consensus 224 vv~G~~G~dE~s~~~~t~v~~~~~g~~~-~~~~p~~~g~~~~~--~~~~~~~~~~na~~~~~vL~G~~-~~~d~v~lNaa 299 (317)
T PRK08136 224 LMRGTEGEVYANPRRCPQIDWIHDGGCR-VLVERQSGSADEPP--ELPAAKDAATTAAWIERVLAGEV-PVPESIARQVA 299 (317)
T ss_pred EEEcCCCceeecCCCCceEEEEeCCEEE-EEECHHHcCCccCc--hhccCCCHHHHHHHHHHHHCCCC-CcchHHHHHHH
Confidence 9999 99999999999999999999988 99999999998875 55 67899999999999999963 66799999999
Q ss_pred HHHHHccCCCCHHHHHH
Q 023546 234 AALLVSCKVNTLAEGVA 250 (281)
Q Consensus 234 ~~L~~~G~~~~~~eg~~ 250 (281)
.+||++|+++|++||+.
T Consensus 300 ~~l~~~g~~~~~~~g~~ 316 (317)
T PRK08136 300 CCLVAAGEAATIEDGLA 316 (317)
T ss_pred HHHHHcCccCCHHHhhc
Confidence 99999999999999975
No 10
>KOG1438 consensus Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-65 Score=446.96 Aligned_cols=264 Identities=62% Similarity=0.989 Sum_probs=251.9
Q ss_pred CCCcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCC-CCCCHHHHHHHHHHcCeEEE
Q 023546 11 LGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVV-IDLDPEGVRRCVDEAGIGFM 89 (281)
Q Consensus 11 ~~~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~-~~~s~~~a~~~l~~~g~~fl 89 (281)
.++.+|||||||||.||||+||.+|+++|.||.+|.||||++.++.+|++|+|++||++ .+.+++.+.+++++.+|.||
T Consensus 101 ~~~~vDIVGTGGDG~NTfNvST~saIvAag~GlkvcKhGnkaStSasGsaDll~~lGCd~l~v~p~~i~~~~e~~~f~Fl 180 (373)
T KOG1438|consen 101 VEDAVDIVGTGGDGANTFNVSTGSAIVAAGCGLKVCKHGNKASTSASGSADLLEALGCDVLDVGPEGIKRCVEEGGFGFL 180 (373)
T ss_pred CCceeEEeccCCCCcceeeecchHHHHHhcccchhhhcCCccccccCccHHHHHhcCceeeccCCcccccccccCceeEE
Confidence 35689999999999999999999999999999999999999999999999999999987 56899999999999999999
Q ss_pred eCCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEec-CCccccCcC
Q 023546 90 MSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPL 168 (281)
Q Consensus 90 ~~~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~G-eG~dE~s~~ 168 (281)
.+|-|||+|+.+.++||+||++|+||++|||+||++..+.++||||+++.++|+++++++|..+.++|.| +|+||+||.
T Consensus 181 ~aPm~Hp~mk~V~piRK~LgipTvFNilGPlLnP~~v~~rivGVy~k~L~~~~AKal~~~g~gs~~~V~g~~GLDE~SP~ 260 (373)
T KOG1438|consen 181 MAPMYHPAMKIVGPIRKKLGIPTVFNILGPLLNPARVSYRIVGVYHKDLVVKMAKALQRFGMGSRALVVGSCGLDEMSPL 260 (373)
T ss_pred echhhcccccchhHHHHhcCCccHHHhcccccCcchhhhheeeeeHHHHHHHHHHHHHHhCCCceEEEEeccCccccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999997777777 999999999
Q ss_pred CceEEEEEeCCe--EEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCc---chHHHHHHHHHHHHHHHccCCC
Q 023546 169 GPGLILDVTQEK--IERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER---GAIADALILNAAAALLVSCKVN 243 (281)
Q Consensus 169 ~~t~v~~~~~g~--i~~~~~~p~~~gl~~~~~~~~~~~~~~~~~~~~~~vl~G~~---~~~~~~v~~naa~~L~~~G~~~ 243 (281)
++|.+|.+++++ +++|.++|.+||++.++++++.++.|..|+..++++|+|+. +|++|.+++|+|++|.++++++
T Consensus 261 G~t~vw~v~~se~k~e~f~~~P~~Fgl~~h~Ls~~asggP~~NAilleevLSg~~hagdPI~Dy~lmNtAall~vs~~~q 340 (373)
T KOG1438|consen 261 GGTLVWDVTPSEEKIEEFSFDPLDFGLPRHTLSDLASGGPDYNAILLEEVLSGESHAGDPIADYLLMNTAALLLVSNRVQ 340 (373)
T ss_pred CCceEEEecCCceeeeeeecCHhhcCCCcCchhhhccCCCCccHHHHHHHhcCcccCCChHHHHHHHHHHHHHHHhhhhh
Confidence 999999999864 67888999999999999999999999999999999999984 6899999999999999999999
Q ss_pred CHHHHHHHHHHHHHccHHHHHHHHHHHHhCC
Q 023546 244 TLAEGVALAREIQLSGKALNTLDLWIEVSKG 274 (281)
Q Consensus 244 ~~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~ 274 (281)
+|+||+..|++.+.||+|++.|+.|+...+.
T Consensus 341 ~l~EGv~~A~esisSG~Alr~L~~fi~~~s~ 371 (373)
T KOG1438|consen 341 TLAEGVTVARESISSGKALRTLDSFINISSL 371 (373)
T ss_pred HHHhhhHHHHHhhcchHHHHHHHHHHhhhhc
Confidence 9999999999999999999999999976654
No 11
>PRK09071 hypothetical protein; Validated
Probab=100.00 E-value=4.4e-64 Score=462.40 Aligned_cols=247 Identities=19% Similarity=0.195 Sum_probs=227.2
Q ss_pred CccccccccCCCCcceE-ecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCccc-HHHHHHHcCCCCCCCHHHHH
Q 023546 1 MIKYATKVEGLGDAVDI-VGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACG-SADVLEALGVVIDLDPEGVR 78 (281)
Q Consensus 1 ~~~~~~~~~~~~~~~Di-~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~g-s~dvLe~LGi~~~~s~~~a~ 78 (281)
|++++.+++. +..+|+ ||||+|+..++ ++++|+++|++|+||+||||+++++++| |+|+||+|||+++.+++++.
T Consensus 67 ~r~~~~~~~~-~~~iD~~~gtG~d~~~~~--~~~~a~vlA~~G~~V~kHGnr~~ssk~g~saDvLeaLGv~~~~~~~~~~ 143 (323)
T PRK09071 67 IRERLQAPPL-AVDLDWPSYAGKRRHLPW--YLLAAKLLAQNGYRVLLHGGGGHTAGRLYTEQLLEALGIPIARSWQEAE 143 (323)
T ss_pred HHHhcccCCC-CCceecCCcCCCCCCccc--HHHHHHHHHHCCCeEEEECCCCCCCCcccHHHHHHHCCCCCCCCHHHHH
Confidence 4667766653 235998 99999976665 5799999999999999999999999986 99999999999999999999
Q ss_pred HHHHHcCeEEEeCCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEe
Q 023546 79 RCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH 158 (281)
Q Consensus 79 ~~l~~~g~~fl~~~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~ 158 (281)
++|++.||+|+++|.|||+|++++++|++||+||+||++|||+||+++++||+|||||+|.++|+++++.+|.++++|||
T Consensus 144 ~~l~~~g~~fl~ap~~hPa~~~~~~~R~~lg~RT~fN~lgpL~NPa~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~alvv~ 223 (323)
T PRK09071 144 QALEEHNIAYLPLEDFAPQLQRMIDLRNTLGLRSPINTLARLLNPLNAKASLQGIFHPGYQQLHREAARLLGDQNALVFK 223 (323)
T ss_pred HHHHhcCeEEeehHHhChHHHHHHHHHHHhCCCCHHHHHHHHcCcCCCCceEEeeEChhHHHHHHHHHHHcCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-CCccccCcCCceEEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCc-chH-HHHHHHHHHHH
Q 023546 159 S-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GAI-ADALILNAAAA 235 (281)
Q Consensus 159 G-eG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~~~~~~~vl~G~~-~~~-~~~v~~naa~~ 235 (281)
| ||+||+||.++|+|+++++|++.++.++ +||++..+ .++++|++++++||+|+. +++ .|+|++|||++
T Consensus 224 G~~G~dE~s~~~~t~v~~~~~g~i~~~~~~--~~g~~~~~------~~~~~na~~~~~vl~G~~~~~~~~d~v~~Naa~a 295 (323)
T PRK09071 224 GEGGESERNPDVSTTLYGSRNGEAWDEEWP--ALSEERHV------KPEELDPEQLLAVWRGEEEDEYGENAVIATMALA 295 (323)
T ss_pred CCCCceeecCCCceEEEEEcCCeEEEEEec--ccccccCC------CCcccCHHHHHHHhCCCCCchHHHHHHHHHHHHH
Confidence 9 9999999999999999999999999884 48876543 278999999999999984 444 58999999999
Q ss_pred HHHccCCCCHHHHHHHHHHHHHcc
Q 023546 236 LLVSCKVNTLAEGVALAREIQLSG 259 (281)
Q Consensus 236 L~~~G~~~~~~eg~~~A~~~l~sG 259 (281)
|| .|+++|++||+++|+++|+.+
T Consensus 296 L~-~g~~~sl~eg~~~A~~~w~~r 318 (323)
T PRK09071 296 LW-RGLNQSREEAFEKAAQLWATR 318 (323)
T ss_pred HH-cCCCCCHHHHHHHHHHHHHHh
Confidence 99 999999999999999999865
No 12
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=100.00 E-value=4.7e-47 Score=358.41 Aligned_cols=239 Identities=23% Similarity=0.309 Sum_probs=216.3
Q ss_pred CccccccccCC---CCcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHc-CCCCCCCHHH
Q 023546 1 MIKYATKVEGL---GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDPEG 76 (281)
Q Consensus 1 ~~~~~~~~~~~---~~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~L-Gi~~~~s~~~ 76 (281)
|++.+.+++.+ +..+|+|||||||.+|||+ +|+++|++|++|+|||||++++++||+|+||+| |+++++++++
T Consensus 62 M~~sg~~~~~~~~~~~~vD~~gTGGdG~kt~ni---~a~ivAA~Gv~VaKhgnR~lss~~GTaD~LE~lpG~~~~ls~e~ 138 (434)
T PRK06078 62 MVNSGDTIDLSAIEGIKVDKHSTGGVGDTTTLV---LAPLVAAFGVPVAKMSGRGLGHTGGTIDKLESIKGFHVEISQED 138 (434)
T ss_pred HHHhCCcccCcccCCCeeEecCCCCCCCCchHH---HHHHHHcCCCCeeeeCCCCcCCCcchHHHHHhCCCCCCCCCHHH
Confidence 45666777643 3389999999999999994 899999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHcCeEEEeC-CccChhhhchHHHHhhhCCCChhhhhhhccCC--------CCCCceEEeee--------ChhhH
Q 023546 77 VRRCVDEAGIGFMMS-TKYHPAMKFVRPVRKKLKVKTVFNILGPMLNP--------ACVPFAVVGVY--------NENLV 139 (281)
Q Consensus 77 a~~~l~~~g~~fl~~-~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP--------~~~~~~v~Gv~--------h~~~~ 139 (281)
+.++|++.||+|+++ |.|||++++++++|++++. ||.+ ||+|| +++.++|+||+ +++..
T Consensus 139 ~~~~l~~~G~~fl~~a~~~~PAdk~v~~lR~v~~t---~n~l-PLi~~SImSKKlAag~~~~vldV~~G~gAfm~~~~~a 214 (434)
T PRK06078 139 FIKLVNENKVAVIGQSGNLTPADKKLYALRDVTAT---VNSI-PLIASSIMSKKIAAGADAIVLDVKTGAGAFMKTVEDA 214 (434)
T ss_pred HHHHHHHhCcEEEccCCCcChhhhhhHHHhccccc---cChH-HhhhhHhhhhhhhcCCCeEEEeeecCCCCCCCCHHHH
Confidence 999999999999995 9999999999999999994 9999 99999 89999999999 99999
Q ss_pred HHHHHHHHHcCCCeEEEEecCCccccCcCCceEEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCC
Q 023546 140 LKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSG 219 (281)
Q Consensus 140 ~~~~~~~~~lg~~~~lvv~GeG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~~~~~~~vl~G 219 (281)
+.+++++..+|.+ .+.+.++.++++ |++||. ..+++.++.+. +++|+|
T Consensus 215 ~~lA~~l~~lG~~---------------~g~~~~a~lt~~--------~~plG~--------~iGna~Ev~Ea-~~vL~G 262 (434)
T PRK06078 215 EELAHAMVRIGNN---------------VGRNTMAVISDM--------SQPLGR--------AIGNALEVLEA-IDTLQG 262 (434)
T ss_pred HHHHHHHHHHHHh---------------cCCeEEEEECCC--------Cccccc--------cCCCHHHHHHH-HHHHCC
Confidence 9999999999864 345666777764 778886 24677888886 999999
Q ss_pred Cc-chHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhCCCCCC
Q 023546 220 ER-GAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKGAPAF 278 (281)
Q Consensus 220 ~~-~~~~~~v~~naa~~L~~~G~~~~~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~~~~~ 278 (281)
+. .+.+|.++.||+.+|++.|.++++++|+++|+++|+||+|+++|++|++.|++++.+
T Consensus 263 ~~~~~~~d~v~~~A~~~L~~~g~~~~~~eg~~~a~e~l~sGkAl~kf~~~v~aqGg~~~~ 322 (434)
T PRK06078 263 KGPKDLTELVLTLGSQMVVLAGKAKTLEEAREHLIEVMNNGKALEKFKEFLSAQGGDASV 322 (434)
T ss_pred CCcccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccHHHHHHHHHHHHhCCCchh
Confidence 85 478999999999999999999999999999999999999999999999999998765
No 13
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=100.00 E-value=1.7e-41 Score=318.61 Aligned_cols=237 Identities=26% Similarity=0.321 Sum_probs=202.8
Q ss_pred CccccccccCC---CCcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcC-CCCCCCHHH
Q 023546 1 MIKYATKVEGL---GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALG-VVIDLDPEG 76 (281)
Q Consensus 1 ~~~~~~~~~~~---~~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LG-i~~~~s~~~ 76 (281)
|++.+.+++.+ ..++|+|||||||.+ +||++|+++|++|+||+|||||++++++||+|+||+|| +++++++++
T Consensus 60 m~~~~~~l~~~~~~~~~vD~~gTGGdG~~---iSt~~a~ivAa~Gv~VaKhgnR~lss~~GTaD~LE~lgG~~v~ls~e~ 136 (405)
T TIGR02644 60 MIDSGEVLDLSSLPGPKVDKHSTGGVGDK---VSLVLGPIVAACGVKVAKMSGRGLGHTGGTIDKLESIPGFRTELSEAE 136 (405)
T ss_pred HHHhCCcCCCcccCCCeeEEeCCCCCCCC---chHHHHHHHHhCCCCEEeeCCCCCCCcchHHHHHHhcCCCCCCCCHHH
Confidence 45666666543 348999999999995 89999999999999999999999999999999999997 999999999
Q ss_pred HHHHHHHcCeEEEeCC-ccChhhhchHHHHhhhCCCChhhhhhhccCCCC--------CCceEEee--------eChhhH
Q 023546 77 VRRCVDEAGIGFMMST-KYHPAMKFVRPVRKKLKVKTVFNILGPMLNPAC--------VPFAVVGV--------YNENLV 139 (281)
Q Consensus 77 a~~~l~~~g~~fl~~~-~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~--------~~~~v~Gv--------~h~~~~ 139 (281)
+.++++++||+|++++ .++|++++|+++|++++ |++|+ ||+||+- +.++|++| ++.+-.
T Consensus 137 ~~~~l~~~G~~fl~~~~~l~PAdk~l~~lRd~~~--Tv~si--pLi~aSimSKK~A~G~~~~vlDVk~G~gAfm~~~e~a 212 (405)
T TIGR02644 137 FIEIVNKVGLAIIGQTKDLAPADKKLYALRDVTG--TVDSI--PLIASSIMSKKLAAGADAIVLDVKVGSGAFMKTLEDA 212 (405)
T ss_pred HHHHHHHcCeEEecCccccCcchhHHHHHhhccc--ccCcH--HHHHHHHHHHHHhcCCCeEEEeecccCCCCcCCHHHH
Confidence 9999999999999998 99999999999999999 89999 9999975 89999999 999999
Q ss_pred HHHHHHHHHcCCCeEE--EEecCCccccCcCCceEEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 023546 140 LKMANALQRFGLKRAL--VVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVL 217 (281)
Q Consensus 140 ~~~~~~~~~lg~~~~l--vv~GeG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~~~~~~~vl 217 (281)
..+++.+..+|.+..+ ++...++||+ +|... ++..+ .....++|
T Consensus 213 ~~LA~~~~~~g~~~g~~~~a~~t~md~p-------------------------lG~~i--------GnalE-v~Eai~~L 258 (405)
T TIGR02644 213 KELAKLMVEIGKGAGRKTSALLTDMNQP-------------------------LGRAI--------GNALE-VKEAVEFL 258 (405)
T ss_pred HHHHHHHHHHHHHcCCeEEEEecCCCcc-------------------------ccCCC--------CChhh-HHHHHHHH
Confidence 9999999888754332 2222344443 34321 22223 23348899
Q ss_pred CCCc-chHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhCCCCCC
Q 023546 218 SGER-GAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKGAPAF 278 (281)
Q Consensus 218 ~G~~-~~~~~~v~~naa~~L~~~G~~~~~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~~~~~ 278 (281)
+|+. .+.+|.++.||+.+|+..|++.+.+||.++|+++|+||+|++||++|++.|++++.+
T Consensus 259 ~g~~p~dl~e~~~~la~~~L~~~g~a~~~~~g~~~a~~~l~sG~Al~kf~~~v~aQGG~~~~ 320 (405)
T TIGR02644 259 KGEGPADLKELTLALAAEMLLLAGIAKTEKEARALAEDVLESGKALEKFRRFVEAQGGDPDV 320 (405)
T ss_pred CCCCcHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCcHHHHHHHHHHHHhCCChhh
Confidence 9985 678899999999999999999999999999999999999999999999999998743
No 14
>PRK04350 thymidine phosphorylase; Provisional
Probab=100.00 E-value=1.6e-39 Score=310.02 Aligned_cols=236 Identities=26% Similarity=0.348 Sum_probs=203.8
Q ss_pred CccccccccCC-CCcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHH
Q 023546 1 MIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR 79 (281)
Q Consensus 1 ~~~~~~~~~~~-~~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~~s~~~a~~ 79 (281)
|++.+.+++.+ ..++|+|||||||.+++ |+.+++++|++|++|+|||||+++|++||+|+||+|| +++++++++.+
T Consensus 140 M~~~g~~l~~~~~~~vDkhgTGGd~g~t~--S~~~apivAA~Gv~VaKhgnRaiss~sGTaD~LEaLg-~v~ls~e~~~~ 216 (490)
T PRK04350 140 MVETGERLDWDRPPVVDKHSIGGVPGNRT--TLIVVPIVAAAGLTIPKTSSRAITSPAGTADTMEVLA-PVDLSVEEIKR 216 (490)
T ss_pred HHHhCCcccCCCCCeEEecCCCCCCCCCE--eHHHHHHHHhCCCceeeecCCCCCCCCchHHHHHHhh-cCCCCHHHHHH
Confidence 45667777654 45899999999988875 6668888899999999999999999999999999999 99999999999
Q ss_pred HHHHcCeEEEe--CCccChhhhchHHHHhhhCCCChhhhhhhccC--------------CCCCCceEEeeeChhhHHHHH
Q 023546 80 CVDEAGIGFMM--STKYHPAMKFVRPVRKKLKVKTVFNILGPMLN--------------PACVPFAVVGVYNENLVLKMA 143 (281)
Q Consensus 80 ~l~~~g~~fl~--~~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlN--------------P~~~~~~v~Gv~h~~~~~~~~ 143 (281)
++++.||||+| ++.|||++++++++|+.++++|++|++++++| |.++..+ +++.+....++
T Consensus 217 ~l~~~G~~flfG~a~~l~PAdk~l~~vR~~l~vds~~li~aSImSKKlA~G~~~lvlDVp~G~ga~---v~~~~~A~~LA 293 (490)
T PRK04350 217 VVEKVGGCLVWGGAVNLSPADDILIRVERPLSIDPRGQLVASILSKKIAAGSTHVVIDIPVGPTAK---VRSVEEARRLA 293 (490)
T ss_pred HHHHcCEEEEECCccccCHHHHHHHHHhhhcCCCcHHHHHHHHhhhHhhcCCCceEEecccCCCCc---CCCHHHHHHHH
Confidence 99999999999 89999999999999999999999999999999 9998888 89999999999
Q ss_pred HHHHHcCCCeEEEEecCCccccCcCCceEEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCC---
Q 023546 144 NALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGE--- 220 (281)
Q Consensus 144 ~~~~~lg~~~~lvv~GeG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~~~~~~~vl~G~--- 220 (281)
+.+..+|.+..+.+. +.++++. .|-.+| ..+..+++...++|+|+
T Consensus 294 ~~~~~vg~~~g~~v~---------------a~lTd~~------qPlG~~-----------iGnalEv~e~l~vL~g~~~g 341 (490)
T PRK04350 294 RLFEEVGDRLGLRVE---------------CAITDGS------QPIGRG-----------IGPALEARDVLAVLENDPDA 341 (490)
T ss_pred HHHHHHHHhcCCeEE---------------EEECCCC------eehhcc-----------CCchHHHHHHHHHhCCCCCC
Confidence 999988864444321 2233332 122222 23567788899999994
Q ss_pred cchHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhCCC
Q 023546 221 RGAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKGA 275 (281)
Q Consensus 221 ~~~~~~~v~~naa~~L~~~G~~~~~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~~ 275 (281)
..++++.++.+|+.+|+..|.+ +.++|+++|++.|+||+|++||++|++.|+++
T Consensus 342 p~dl~e~~l~lA~~~L~~~g~~-~~~~g~~~a~~~L~sG~Al~kf~~ii~aQGG~ 395 (490)
T PRK04350 342 PNDLREKSLRLAGILLEMGGVA-PGGEGYALAREILESGKALEKFQEIIEAQGGD 395 (490)
T ss_pred CHhHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCcHHHHHHHHHHHHcCCC
Confidence 2578899999999999999977 99999999999999999999999999999997
No 15
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=100.00 E-value=1.8e-33 Score=266.49 Aligned_cols=244 Identities=25% Similarity=0.329 Sum_probs=177.1
Q ss_pred CccccccccCC-----CCcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHc-CCCCCCCH
Q 023546 1 MIKYATKVEGL-----GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDP 74 (281)
Q Consensus 1 ~~~~~~~~~~~-----~~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~L-Gi~~~~s~ 74 (281)
|++.+.+++.+ .+.+|+|||||||+ |+||++|+++|++|++|+|||||++++++||+|+||+| |+++++++
T Consensus 63 m~~sg~~i~~~~~d~~~~~vDkhgTGGdG~---niS~~~a~ivAa~Gv~VaKhg~R~lss~~GTaD~LE~LpG~~v~ls~ 139 (440)
T PRK05820 63 MRDSGEVLDWSSLNLNGPIVDKHSTGGVGD---KISLMLAPMVAACGGYVPMISGRGLGHTGGTLDKLEAIPGYRAFPSN 139 (440)
T ss_pred HHHhCCcCCCccccCCCCeEEEcCCCCCCc---cHHHHHHHHHHhCCCCEEeeCCCCCCCcccHHHHHHhCCCCCCCCCH
Confidence 34555555432 35799999999998 78999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHcCeEEEeCC-ccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCe
Q 023546 75 EGVRRCVDEAGIGFMMST-KYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKR 153 (281)
Q Consensus 75 ~~a~~~l~~~g~~fl~~~-~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~ 153 (281)
+++.++++++||+|++++ .|||++++++++|++++. +-.. ||+-- +|.++++ + .|. .
T Consensus 140 e~~~~~l~~~G~~~~~~~~~l~PAdk~l~~lRdvt~t--vds~--pli~a--------SImSKK~----A-----~G~-~ 197 (440)
T PRK05820 140 DRFREILKDVGVAIIGQTSDLAPADKRLYALRDVTAT--VESI--PLITA--------SILSKKL----A-----EGL-D 197 (440)
T ss_pred HHHHHHHHHcCeEEEcCchhcChHHHHHHHHhcccCC--CChH--HHHHH--------HHHHHHH----H-----cCC-C
Confidence 999999999999999998 999999999999998874 1111 22211 3433333 2 566 4
Q ss_pred EEEEe---cCC-----ccccCcCCceEEEEE--eCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCC-c-
Q 023546 154 ALVVH---SEG-----LDEMSPLGPGLILDV--TQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGE-R- 221 (281)
Q Consensus 154 ~lvv~---GeG-----~dE~s~~~~t~v~~~--~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~~~~~~~vl~G~-~- 221 (281)
++|+. |.| .+|..-...+.+ .+ .-|......++--+-. +.. ..++ ...+....++|+|+ .
T Consensus 198 ~lvlDVk~G~gAfmkt~~~A~~La~~mv-~ig~~~g~~~~a~lTdm~qP-----lG~-~iGn-alEv~Eai~~L~g~~gp 269 (440)
T PRK05820 198 ALVLDVKVGSGAFMKTYEEARELARSMV-EVANGAGVRTTALLTDMNQP-----LAS-SAGN-ALEVREAVEFLTGGYRP 269 (440)
T ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHH-HHHHHcCCeEEEEEccCCCc-----ccC-ccch-HHHHHHHHHHHCCCCCC
Confidence 55443 544 333322222111 11 1122222222221110 110 0123 33344467899998 3
Q ss_pred chHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhCCCCC
Q 023546 222 GAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKGAPA 277 (281)
Q Consensus 222 ~~~~~~v~~naa~~L~~~G~~~~~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~~~~ 277 (281)
.++.+.++.-++.+|+..|.+.+.++|.+++++.|+||+|++||++|++.|++|+.
T Consensus 270 ~dl~e~~~~la~~ml~~~g~~~~~~~g~~~~~~~l~sG~Al~kF~~~v~aQGGd~~ 325 (440)
T PRK05820 270 PRLVEVTMALAAEMLVLAGLAKDEAEARADLAAVLDSGKAAERFGRMVAAQGGPPD 325 (440)
T ss_pred hhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCChh
Confidence 46777777779999999999999999999999999999999999999999999875
No 16
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=100.00 E-value=1.2e-32 Score=259.82 Aligned_cols=244 Identities=26% Similarity=0.338 Sum_probs=178.3
Q ss_pred CccccccccCC-----CCcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHc-CCCCCCCH
Q 023546 1 MIKYATKVEGL-----GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDP 74 (281)
Q Consensus 1 ~~~~~~~~~~~-----~~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~L-Gi~~~~s~ 74 (281)
|++.+.+++.+ ...+|+|||||||. |+||++|+++|++|++|+|||||++++++||+|+||+| |+++++++
T Consensus 62 M~~sg~~i~~~~~~~~~~~vDkhgTGGdG~---niSt~~apivAA~Gv~VaKhgnR~iss~~GTaD~LEalpG~~v~ls~ 138 (437)
T TIGR02643 62 MRDSGDVLDWRSLDLNGPVVDKHSTGGVGD---VVSLMLGPIVAACGGYVPMISGRGLGHTGGTLDKLEAIPGYDIFPDP 138 (437)
T ss_pred HHHhCCcccCcccccCCCeeEecCCCCCCc---chhHHHHHHHHhCCCCeeeecCCCcCCCCchHHHHHhCCCCCCCCCH
Confidence 34555666543 35899999999999 78999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHcCeEEEe-CCccChhhhchHHHHhhhCC-CChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCC
Q 023546 75 EGVRRCVDEAGIGFMM-STKYHPAMKFVRPVRKKLKV-KTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLK 152 (281)
Q Consensus 75 ~~a~~~l~~~g~~fl~-~~~~~P~l~~l~~lR~~lg~-Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~ 152 (281)
+++.+++++.||+|+. .+.++|++++++++|+..+. .++ ||+-. +|.++++ + .|.+
T Consensus 139 e~~~~~l~~~g~~f~gqa~~l~PADk~ly~lRDvt~tVds~-----pLi~a--------SImSKKl----A-----~g~d 196 (437)
T TIGR02643 139 ALFRRVVKDVGVAIIGQTADLAPADKRFYATRDVTATVESI-----PLITA--------SILSKKL----A-----AGLD 196 (437)
T ss_pred HHHHHHHHHcCceEEccCCCcCcchhceeeeeeecCCCCcH-----HHHHH--------HHHHHHH----H-----cCCC
Confidence 9999999999999998 69999999999999986652 221 22222 4544444 2 5663
Q ss_pred eEEEEe---cCC-----ccccCcCCceEEEEE--eCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCC--
Q 023546 153 RALVVH---SEG-----LDEMSPLGPGLILDV--TQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGE-- 220 (281)
Q Consensus 153 ~~lvv~---GeG-----~dE~s~~~~t~v~~~--~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~~~~~~~vl~G~-- 220 (281)
.+|+. |.| .+|..-...+.+ .+ .-|......++--+-. +.. ..++.-+ +....++|+|+
T Consensus 197 -~ivlDVk~G~gAfmk~~~~A~~LA~~mv-~ig~~~g~~~~a~iTdm~qP-----lG~-~iGnalE-v~Eai~~L~g~~g 267 (437)
T TIGR02643 197 -ALVMDVKVGNGAFMPTYEESEELARSLV-DVANGAGVRTTALITDMNQP-----LAS-AAGNAVE-VRNAVDFLTGEKR 267 (437)
T ss_pred -eEEEEcCcCCCCcCCCHHHHHHHHHHHH-HHHHHcCCeEEEEECCCCCc-----ccc-ccCcHHH-HHHHHHHHCCCCC
Confidence 44443 555 222211111111 00 1122222223211110 110 1233333 34467899997
Q ss_pred cchHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhCCCCCC
Q 023546 221 RGAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKGAPAF 278 (281)
Q Consensus 221 ~~~~~~~v~~naa~~L~~~G~~~~~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~~~~~ 278 (281)
..++.+.++.-++.+|...|++.+.++|.+++++.|+||+|++||++|++.|++|+.+
T Consensus 268 p~dl~e~~~~la~~ml~~~g~~~~~~~~~~~~~~~l~sG~Al~kF~~~v~aQGGd~~~ 325 (437)
T TIGR02643 268 NPRLEDVTMALAAEMLVSGGLAADEAEARAKLQAVLDSGRAAERFARMVAALGGPADF 325 (437)
T ss_pred CccHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCcHHHHHHHHHHHHcCCCchh
Confidence 3578888999999999999999999999999999999999999999999999998864
No 17
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=100.00 E-value=3.2e-31 Score=253.05 Aligned_cols=241 Identities=25% Similarity=0.317 Sum_probs=177.6
Q ss_pred CccccccccCC-CCcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHH
Q 023546 1 MIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR 79 (281)
Q Consensus 1 ~~~~~~~~~~~-~~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~~s~~~a~~ 79 (281)
|++.+.+++.. +..+|+||||||+.+++|++ +++++|++|++|+|||||++|+++||+|+||.|| +++++++++.+
T Consensus 145 M~~sg~~l~~~~~~~vDkhgTGGd~gnk~ni~--~apIvAA~Gv~VaKhsnRaits~sGTAD~LE~Lg-~v~ls~e~~~~ 221 (493)
T TIGR02645 145 MADTGEMLEWDREPIMDKHSIGGVPGNKTSLI--VVPIVAAAGLLIPKTSSRAITSAAGTADTMEVLT-RVALSAEEIKR 221 (493)
T ss_pred HHHhCCCccCCCCCeEEEeCCCCCCCCCEeHH--HHHHHHhCCCCeeeeCCCCcCCCccHHHHHHHhc-CCCCCHHHHHH
Confidence 45566666654 45899999999999988774 7788899999999999999999999999999999 99999999999
Q ss_pred HHHHcCeEEEe--CCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEE
Q 023546 80 CVDEAGIGFMM--STKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVV 157 (281)
Q Consensus 80 ~l~~~g~~fl~--~~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv 157 (281)
++++.|+||++ ++.|||+++.++++|+.+++.|+--++. +|.++++ + .|.+ .+|+
T Consensus 222 ~ve~~G~~fl~G~a~~l~PAdk~i~~vR~~l~vds~~li~a-------------SImSKKl----A-----~G~~-~lvl 278 (493)
T TIGR02645 222 IVEKVGGCLVWGGALNLAPADDVLIRVERPLSIDPRAQMLA-------------SIMSKKI----A-----AGST-HVLI 278 (493)
T ss_pred HHHHCCEEEEECCCcccCHHHHHHHHHHhhcCCCcHHHHHH-------------HHHHHHH----h-----cCCC-eEEE
Confidence 99999999999 8999999999999999999988744433 3444444 2 5653 3333
Q ss_pred e---cCC-----ccccCcCCceEEEEE--eCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCC---cchH
Q 023546 158 H---SEG-----LDEMSPLGPGLILDV--TQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGE---RGAI 224 (281)
Q Consensus 158 ~---GeG-----~dE~s~~~~t~v~~~--~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~~~~~~~vl~G~---~~~~ 224 (281)
. |.| .+|..-.+...+ .+ +-|......++--+- |+- +...+.-.+....++|+|+ ..++
T Consensus 279 Dvk~G~gAf~~~~~~A~~La~~~~-~vg~~~G~~~~a~iTdm~q-----PlG--~~iGnalEv~Eal~~L~g~~~~p~dL 350 (493)
T TIGR02645 279 DIPVGPGAKVRSLQEAERLARLFI-ELGDRLGVRVECAITYGSQ-----PIG--RGIGPALEAKEALAVLERSPAAPFSL 350 (493)
T ss_pred eccccCCCcCCCHHHHHHHHHHHH-HHHHHcCCeEEEEECCCCC-----ccc--cccCcHHHHHHHHHHHCCCCCCCccH
Confidence 3 444 222211111100 00 011112222221110 011 1123344455578899997 2568
Q ss_pred HHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhCCCC
Q 023546 225 ADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKGAP 276 (281)
Q Consensus 225 ~~~v~~naa~~L~~~G~~~~~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~~~ 276 (281)
.+.++.-|+.+|...|.+. .++|.++|++.|+||+||+||++|++.|++++
T Consensus 351 ~e~~~~la~~~L~~~g~~~-~~~g~~~a~~~l~sG~Al~kf~~ii~aQGG~~ 401 (493)
T TIGR02645 351 REKSLLLAGILLEMGGAAP-RGAGKELARELLDSGKALEKMKEIIEAQGGDP 401 (493)
T ss_pred HHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHhCcHHHHHHHHHHHHcCCCC
Confidence 8888889999999999987 79999999999999999999999999999985
No 18
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=99.97 E-value=1.2e-30 Score=249.23 Aligned_cols=243 Identities=24% Similarity=0.312 Sum_probs=175.9
Q ss_pred CccccccccCC-CCcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHH
Q 023546 1 MIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR 79 (281)
Q Consensus 1 ~~~~~~~~~~~-~~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~~s~~~a~~ 79 (281)
|++.+.+++.. +..+|+|||||||.+++|++ +++++|++|++|.|||||+++|++||+|+||+|+ +++++++++.+
T Consensus 146 M~~sg~~l~~~~~~vvDkhgTGGd~gnk~nl~--~apIVAA~Gv~VaKhsnRaits~sGTaD~LEsL~-~v~ls~e~~~~ 222 (500)
T TIGR03327 146 MAETGDMLSFDRHPIMDKHSIGGVPGNKISLL--VVPIVAAAGLTIPKTSSRAITSAAGTADVMEVLA-PVEFSADEIKR 222 (500)
T ss_pred HHHhCCcccCCCCCeEEEeCCCCCCCCCEEHH--HHHHHHhCCCCeeeeCCCCcCCCccHHHHHHHhh-CCCCCHHHHHH
Confidence 45556666544 45899999999999988885 6777799999999999999999999999999995 99999999999
Q ss_pred HHHHcCeEEEe--CCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEE
Q 023546 80 CVDEAGIGFMM--STKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVV 157 (281)
Q Consensus 80 ~l~~~g~~fl~--~~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv 157 (281)
++++.|+||++ ++.|||++++++.+|+.+.+-|+--++. +|.+|++ + .|.+ .+|+
T Consensus 223 ~v~~~G~~fl~Gqa~~l~PAdk~l~alrdt~tvds~~li~a-------------SImSKKl----A-----~G~d-~lvl 279 (500)
T TIGR03327 223 IVEKTGGCLVWGGATNLAPADDKIIKVERPLSIDPRGQMLA-------------SVMAKKG----A-----IGAD-HVVI 279 (500)
T ss_pred HHHHCCEEEEECCccccCHHHHHHHHhccccCCCcHHHHHH-------------HHHHHHH----H-----cCCC-eEEE
Confidence 99999999999 8999999999999999777666532222 4444444 2 5653 4444
Q ss_pred e---cCC-----ccccCcCCceEEEEE--eCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCC-Cc-chHH
Q 023546 158 H---SEG-----LDEMSPLGPGLILDV--TQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSG-ER-GAIA 225 (281)
Q Consensus 158 ~---GeG-----~dE~s~~~~t~v~~~--~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~~~~~~~vl~G-~~-~~~~ 225 (281)
. |.| .+|..-...+.+ .+ .-|......++--+-. +. +...+.-.+....++|+| +. .++.
T Consensus 280 DVk~G~gAfm~~~~~A~~LA~~mv-~vg~~~G~~~~a~iTdm~qP-----lG--~~iGnaLEv~Eal~~L~g~~~p~dL~ 351 (500)
T TIGR03327 280 DIPVGKGAKVKTVEEGRKLARDFI-ELGDRLGMNVECAITYGGQP-----IG--RAIGPALEAKEALKVLEDGEGPNSLI 351 (500)
T ss_pred EcCcCCCCcCCCHHHHHHHHHHHH-HHHHHcCCeEEEEECCCCCc-----cc--cccCcHHHHHHHHHHhcCCCCCccHH
Confidence 3 444 222211111110 00 0122222222211100 11 111234445557789999 43 5788
Q ss_pred HHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhCCCCCC
Q 023546 226 DALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKGAPAF 278 (281)
Q Consensus 226 ~~v~~naa~~L~~~G~~~~~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~~~~~ 278 (281)
+.++.-|+.+|...|.+. .++|.++|++.|+||+|++||++|++.|++++.+
T Consensus 352 e~~~~la~~~L~~~g~~~-~~~g~~~a~~~l~sG~Al~kf~~ii~aQGGd~~~ 403 (500)
T TIGR03327 352 EKSLSLAGILLEMGGVAP-RGEGKNLALEILESGKALEKFKEIIAAQGGDPDV 403 (500)
T ss_pred HHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHhCcHHHHHHHHHHHHcCCCccc
Confidence 988899999999999987 7999999999999999999999999999998754
No 19
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=99.87 E-value=2.4e-21 Score=179.81 Aligned_cols=233 Identities=26% Similarity=0.365 Sum_probs=172.0
Q ss_pred CCcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHc-CCCCCCCHHHHHHHHHHcCeEEEe
Q 023546 12 GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDPEGVRRCVDEAGIGFMM 90 (281)
Q Consensus 12 ~~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~L-Gi~~~~s~~~a~~~l~~~g~~fl~ 90 (281)
...+|.++|||.|.++ |+.+++++|++|++|.|-.+|+.++..|+.|.||++ |++++.+.++..+++.++|+....
T Consensus 77 ~~~vDKHStGGVgdk~---sL~l~PiVAA~Gl~VpK~SgRgLghtGGT~DklEsi~g~~~~~~e~~fi~~~~~~g~aiiG 153 (435)
T COG0213 77 GPVVDKHSTGGVGDKT---SLILVPIVAAAGLPVPKMSGRGLGHTGGTLDKLESIPGVNLELDEIKFIEQVKDNGVAIIG 153 (435)
T ss_pred CceecccCCCCCCccc---chhHHHHHHhcCCcccccccCccccCccchhhhhccCCcccCcCHHHHHHHhhcCCeEEEe
Confidence 4689999999999765 999999999999999999999999999999999999 999999999999999999999999
Q ss_pred C-CccChhhhchHHHHhhhC-CCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEe---cCC----
Q 023546 91 S-TKYHPAMKFVRPVRKKLK-VKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH---SEG---- 161 (281)
Q Consensus 91 ~-~~~~P~l~~l~~lR~~lg-~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~---GeG---- 161 (281)
+ .++.|+.++|+.+|+.++ +-++ ||+-- +|.++++ + .|. +++++. |.|
T Consensus 154 qs~~LaPADkklyalrdvtaTVdsi-----pLias--------SIMSKKl----A-----~G~-~~ivlDVkvG~GAfmk 210 (435)
T COG0213 154 QSGNLAPADKKLYALRDVTATVDSI-----PLIAS--------SIMSKKL----A-----AGA-DAIVLDVKVGSGAFMK 210 (435)
T ss_pred CcCCcCcccceeEEeeeccccCCcH-----HHHHH--------HHHHHHH----h-----ccC-CcEEEEecccCCCccC
Confidence 9 499999999999999998 4444 22222 3444443 2 465 344443 455
Q ss_pred -ccccCcCCceEEEEEeC--CeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCc-chHHHHHHHHHHHHHH
Q 023546 162 -LDEMSPLGPGLILDVTQ--EKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GAIADALILNAAAALL 237 (281)
Q Consensus 162 -~dE~s~~~~t~v~~~~~--g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~~~~~~~vl~G~~-~~~~~~v~~naa~~L~ 237 (281)
.++..-.....+ ++.+ |......++ |.+- |+.. ..++ .-.+.-..++|.|+. .++.|.++.-++.+|.
T Consensus 211 t~~~a~~LA~~mv-~ig~~~g~~t~a~iT--dm~Q---PLG~-aiGn-alEv~Eal~~L~g~~p~dL~e~~l~la~~mL~ 282 (435)
T COG0213 211 TVEDARELAKAMV-EIGKGLGRKTTAVIT--DMNQ---PLGR-AIGN-ALEVREALETLKGKGPPDLVELSLALAGEMLE 282 (435)
T ss_pred CHHHHHHHHHHHH-HHHHhcCCeEEEEEc--CCCC---chhh-hhcc-HHHHHHHHHHHhccCCccHHHHHHHHHHHHHH
Confidence 122211111111 1111 222222222 1110 0110 1123 333444667888865 5788999999999999
Q ss_pred HccCCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhCCCCCC
Q 023546 238 VSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKGAPAF 278 (281)
Q Consensus 238 ~~G~~~~~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~~~~~ 278 (281)
..|.+.+.+||.+++++.|+||+||+||.+|++.|++|+.|
T Consensus 283 ~~g~a~~~~~a~~~~~~vl~sGkA~ekF~~~v~aQGGd~~~ 323 (435)
T COG0213 283 MTGLAKTGEEAKAKAREVLESGKALEKFKEIVAAQGGDPSF 323 (435)
T ss_pred HcCccCccHHHHHHHHHHHhCchHHHHHHHHHHHhCCChhh
Confidence 99999999999999999999999999999999999999764
No 20
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=73.24 E-value=3.2 Score=31.69 Aligned_cols=58 Identities=24% Similarity=0.178 Sum_probs=41.4
Q ss_pred cceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCC
Q 023546 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID 71 (281)
Q Consensus 14 ~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~ 71 (281)
.+|+-||=++|...++=+.-+.--+-+.|.|+...-|.+..++....+.|+.+|++++
T Consensus 2 l~D~dGvl~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~ 59 (101)
T PF13344_consen 2 LFDLDGVLYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVD 59 (101)
T ss_dssp EEESTTTSEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--
T ss_pred EEeCccEeEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCC
Confidence 3677788888887656555566667778999999999887776777888899998864
No 21
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=69.72 E-value=1.4e+02 Score=31.43 Aligned_cols=129 Identities=17% Similarity=0.209 Sum_probs=73.8
Q ss_pred CcceEecCCCCCCCCccchHHHHHHHH----cCC-CcEEeeCCCCCCCcccHHHHH----HHcCCCCC--CCHHHHHHHH
Q 023546 13 DAVDIVGTGGDGANTVNISTGASILAA----ACG-AKVAKQGSRSSSSACGSADVL----EALGVVID--LDPEGVRRCV 81 (281)
Q Consensus 13 ~~~Di~gtggdG~~t~nis~~aa~vlA----~~G-~~V~~HG~~~~~~~~gs~dvL----e~LGi~~~--~s~~~a~~~l 81 (281)
.++=++|+.|.|+. |.++.+++ ..| .+|.+-..+ +.+.|+.+-| +.+|+++. .+++++.+.+
T Consensus 186 ~Vi~lVGpnGvGKT-----TTiaKLA~~~~~~~G~kkV~lit~D--t~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al 258 (767)
T PRK14723 186 GVLALVGPTGVGKT-----TTTAKLAARCVAREGADQLALLTTD--SFRIGALEQLRIYGRILGVPVHAVKDAADLRFAL 258 (767)
T ss_pred eEEEEECCCCCcHH-----HHHHHHHhhHHHHcCCCeEEEecCc--ccchHHHHHHHHHHHhCCCCccccCCHHHHHHHH
Confidence 46779999999995 44444443 334 466553332 4566665554 45687764 5777776666
Q ss_pred HH---cCeEEEeCCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEee-eChhhHHHHHHHHHHc---CCCeE
Q 023546 82 DE---AGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGV-YNENLVLKMANALQRF---GLKRA 154 (281)
Q Consensus 82 ~~---~g~~fl~~~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv-~h~~~~~~~~~~~~~l---g~~~~ 154 (281)
++ ..+.+++.+-.+|.-..++..-+.+. ...+|.. .+.|+.. ++.+-+..+.+.++.. +.+..
T Consensus 259 ~~~~~~D~VLIDTAGRs~~d~~l~eel~~l~---------~~~~p~e-~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~gl 328 (767)
T PRK14723 259 AALGDKHLVLIDTVGMSQRDRNVSEQIAMLC---------GVGRPVR-RLLLLNAASHGDTLNEVVHAYRHGAGEDVDGC 328 (767)
T ss_pred HHhcCCCEEEEeCCCCCccCHHHHHHHHHHh---------ccCCCCe-EEEEECCCCcHHHHHHHHHHHhhcccCCCCEE
Confidence 54 57889999887776655544433321 1234432 2344433 3444444455555543 56555
Q ss_pred EEEe
Q 023546 155 LVVH 158 (281)
Q Consensus 155 lvv~ 158 (281)
++-|
T Consensus 329 IlTK 332 (767)
T PRK14723 329 IITK 332 (767)
T ss_pred EEec
Confidence 6556
No 22
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=66.08 E-value=63 Score=28.56 Aligned_cols=120 Identities=13% Similarity=0.083 Sum_probs=69.9
Q ss_pred cceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCC-----CCHHHHHHHHHHcCe--
Q 023546 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID-----LDPEGVRRCVDEAGI-- 86 (281)
Q Consensus 14 ~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~-----~s~~~a~~~l~~~g~-- 86 (281)
.+|+-||=++|.+.++-..-+---+.+.|++|+.--|.+.-+.....+.|+.+|+++. .+-.-+.+.|.+.+.
T Consensus 5 ~~D~DGtl~~~~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~~~~iit~~~~~~~~l~~~~~~~ 84 (249)
T TIGR01457 5 LIDLDGTMYKGKERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPATLETVFTASMATADYMNDLKLEK 84 (249)
T ss_pred EEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEeeHHHHHHHHHHhcCCCC
Confidence 4788899888888666433333357788999987766554455567889999999865 223344566666431
Q ss_pred -EEE-eCCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHc
Q 023546 87 -GFM-MSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRF 149 (281)
Q Consensus 87 -~fl-~~~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~l 149 (281)
.|+ ..+.+...+ +..|+.. .+-.+...|+|....--.+.+.+++..+
T Consensus 85 ~v~~lg~~~l~~~l-------~~~g~~~---------~~~~~~~Vvvg~~~~~~y~~l~~a~~~l 133 (249)
T TIGR01457 85 TVYVIGEEGLKEAI-------KEAGYVE---------DKEKPDYVVVGLDRQIDYEKFATATLAI 133 (249)
T ss_pred EEEEEcChhHHHHH-------HHcCCEe---------cCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 222 222221111 2234421 1234567788886554445555566555
No 23
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=64.16 E-value=6.7 Score=31.02 Aligned_cols=90 Identities=19% Similarity=0.226 Sum_probs=60.0
Q ss_pred cCCCCCCCHHHHHHHHHHcCeEEEeC--CccChhhhchHHHHhhhC--CCChhhhhhhccCCCCCCceEEeeeChhhHHH
Q 023546 66 LGVVIDLDPEGVRRCVDEAGIGFMMS--TKYHPAMKFVRPVRKKLK--VKTVFNILGPMLNPACVPFAVVGVYNENLVLK 141 (281)
Q Consensus 66 LGi~~~~s~~~a~~~l~~~g~~fl~~--~~~~P~l~~l~~lR~~lg--~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~ 141 (281)
.|+|-+.+-..|.+.|+++|+.|-.. -.=-|.-..|..+=+++| ++.++|+-+....=.+ ...-........+.
T Consensus 6 y~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~g~~~~~li~t~~~~~r~L~--~~~~~~~~~~~~~~ 83 (117)
T COG1393 6 YGNPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSKLGDGVEELINTRGTTYRELN--LDKEDLSDEELIEA 83 (117)
T ss_pred EeCCCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHcCccHHHHHHhccchHHHcC--CcccccChHHHHHH
Confidence 36788888999999999999999544 333677778888888888 8999999776555544 33334444455544
Q ss_pred HHHHHHHcCCCeEEEEec
Q 023546 142 MANALQRFGLKRALVVHS 159 (281)
Q Consensus 142 ~~~~~~~lg~~~~lvv~G 159 (281)
+.+--.++ +|=++|.+
T Consensus 84 i~~~~~Li--kRPivv~~ 99 (117)
T COG1393 84 LLENPSLI--KRPIVVDN 99 (117)
T ss_pred HHhChhhc--cCCeEEeC
Confidence 44433222 34455543
No 24
>PRK10444 UMP phosphatase; Provisional
Probab=63.64 E-value=20 Score=31.86 Aligned_cols=71 Identities=13% Similarity=-0.009 Sum_probs=51.8
Q ss_pred cceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCC-----HHHHHHHHHHc
Q 023546 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLD-----PEGVRRCVDEA 84 (281)
Q Consensus 14 ~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~~s-----~~~a~~~l~~~ 84 (281)
.+|+-||=++|...++-+.-+---+.+.|.+++.--|++..+.....+-|+.+|+++..+ ..-+.+.|.+.
T Consensus 5 ~~DlDGtL~~~~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~~~~i~ts~~~~~~~L~~~ 80 (248)
T PRK10444 5 ICDIDGVLMHDNVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYTSAMATADFLRRQ 80 (248)
T ss_pred EEeCCCceEeCCeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCHhhEecHHHHHHHHHHhC
Confidence 468888877777655545545556788999999988888766677888899999976532 45566677764
No 25
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=62.34 E-value=5.9 Score=36.57 Aligned_cols=44 Identities=25% Similarity=0.356 Sum_probs=33.1
Q ss_pred EecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHH
Q 023546 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEA 65 (281)
Q Consensus 17 i~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~ 65 (281)
+.|-||.|+.| ++.+.|+-+|+.|.+|+.-..+ +.....|+|..
T Consensus 6 ~~GKGGVGKTT--~aaA~A~~~A~~G~rtLlvS~D---pa~~L~d~l~~ 49 (305)
T PF02374_consen 6 FGGKGGVGKTT--VAAALALALARRGKRTLLVSTD---PAHSLSDVLGQ 49 (305)
T ss_dssp EEESTTSSHHH--HHHHHHHHHHHTTS-EEEEESS---TTTHHHHHHTS
T ss_pred EecCCCCCcHH--HHHHHHHHHhhCCCCeeEeecC---CCccHHHHhCC
Confidence 68999999997 6888889999999999987443 33445666643
No 26
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=62.00 E-value=31 Score=29.17 Aligned_cols=89 Identities=24% Similarity=0.200 Sum_probs=61.8
Q ss_pred EecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCC-----CCCccc--HHHHHHHcC-CCCCCCHHHHHHHHHHc----
Q 023546 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRS-----SSSACG--SADVLEALG-VVIDLDPEGVRRCVDEA---- 84 (281)
Q Consensus 17 i~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~-----~~~~~g--s~dvLe~LG-i~~~~s~~~a~~~l~~~---- 84 (281)
+.|++|.|+ ||.|..+.+..|++=+--|+-- .....| ...+++.=+ ++=.....-+...+++.
T Consensus 5 ilG~pGaGK-----~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~ 79 (178)
T COG0563 5 ILGPPGAGK-----STLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKA 79 (178)
T ss_pred EECCCCCCH-----HHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccC
Confidence 789999999 7899999999888877655522 223334 344555555 33334446666777765
Q ss_pred CeEEEeCCccChhhhchHHHHhhhCC
Q 023546 85 GIGFMMSTKYHPAMKFVRPVRKKLKV 110 (281)
Q Consensus 85 g~~fl~~~~~~P~l~~l~~lR~~lg~ 110 (281)
+|-|..-|...+.+..+-..-+++|.
T Consensus 80 ~~I~dg~PR~~~qa~~l~r~l~~~g~ 105 (178)
T COG0563 80 GFILDGFPRTLCQARALKRLLKELGV 105 (178)
T ss_pred eEEEeCCCCcHHHHHHHHHHHHHcCC
Confidence 68888889999988887777666663
No 27
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=60.08 E-value=92 Score=30.14 Aligned_cols=135 Identities=15% Similarity=0.182 Sum_probs=73.9
Q ss_pred CcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHH----HHcCCCC--CCCHHHHHHHHHH---
Q 023546 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVL----EALGVVI--DLDPEGVRRCVDE--- 83 (281)
Q Consensus 13 ~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvL----e~LGi~~--~~s~~~a~~~l~~--- 83 (281)
..+=++|++|.|+.|.-...++.+.+-..|.+|..-... +.+.|+.+-| +.+|+++ ..++++..+.+++
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D--~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~ 299 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLD--TYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRD 299 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECC--ccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCC
Confidence 456789999999964222222222212457777765432 3455544444 3477775 4566666666554
Q ss_pred cCeEEEeCCccChhhhc-hHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEe
Q 023546 84 AGIGFMMSTKYHPAMKF-VRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH 158 (281)
Q Consensus 84 ~g~~fl~~~~~~P~l~~-l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~ 158 (281)
..+.+++.+-+.|.-.. +..+++.+. ...+|......+-.-..+.-+..+.+.++.++..++++-|
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~---------~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~~vI~TK 366 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIE---------FSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLIFTK 366 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHh---------ccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCCCEEEEec
Confidence 56788888877665322 233444333 1123432223333334555556666777778876555545
No 28
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=51.94 E-value=1.5e+02 Score=28.91 Aligned_cols=131 Identities=14% Similarity=0.208 Sum_probs=71.3
Q ss_pred cceEecCCCCCCCCccchHHHHHHH----HcCCCcEEeeCCCCCCCcccHHH----HHHHcCCCCCC--CHHHHHHHHHH
Q 023546 14 AVDIVGTGGDGANTVNISTGASILA----AACGAKVAKQGSRSSSSACGSAD----VLEALGVVIDL--DPEGVRRCVDE 83 (281)
Q Consensus 14 ~~Di~gtggdG~~t~nis~~aa~vl----A~~G~~V~~HG~~~~~~~~gs~d----vLe~LGi~~~~--s~~~a~~~l~~ 83 (281)
.+=++|.+|.|+. |.++.++ ...|.+|..-..+. -+.++.+ ..+.+|+++.. ++.++.+.+++
T Consensus 225 vi~lvGptGvGKT-----TtaaKLA~~~~~~~G~~V~Lit~Dt--~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~ 297 (432)
T PRK12724 225 VVFFVGPTGSGKT-----TSIAKLAAKYFLHMGKSVSLYTTDN--YRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLAR 297 (432)
T ss_pred EEEEECCCCCCHH-----HHHHHHHHHHHHhcCCeEEEecccc--hhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHh
Confidence 4668999999995 3444333 34578887666543 3444333 33567887642 24555666654
Q ss_pred c--CeEEEeCCccChh-hhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEe
Q 023546 84 A--GIGFMMSTKYHPA-MKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH 158 (281)
Q Consensus 84 ~--g~~fl~~~~~~P~-l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~ 158 (281)
. .+.+++.+-+.|. ...+-.+++.+.. +++ .+|...-..+-.-++..-.....+.++.+|.+..++-|
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~------~~~-~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTK 368 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSC------FGE-KDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTK 368 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHh------hcC-CCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEc
Confidence 4 4556666666542 2333344332221 111 11221222233455555666777778888997777766
No 29
>PF11501 Nsp1: Non structural protein Nsp1; InterPro: IPR021590 Nsp1 is the N-terminal cleavage product from the viral replicase that mediates RNA replication and processing []. The specific function of the protein is unknown however the structure has been determined. The protein has a novel alpha/beta fold formed by a 6 stranded beta barrel with an alpha helix covering one end of the barrel and another helix alongside the barrel []. Nsp1 could be involved in the degradation of mRNA. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity, 0016788 hydrolase activity, acting on ester bonds, 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2HSX_A 2GDT_A.
Probab=50.10 E-value=13 Score=28.36 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=17.5
Q ss_pred HccCCCCHHHHHHHHHHHHHccHH
Q 023546 238 VSCKVNTLAEGVALAREIQLSGKA 261 (281)
Q Consensus 238 ~~G~~~~~~eg~~~A~~~l~sG~a 261 (281)
+.|-.++.|+|++.||+++..|+.
T Consensus 16 vrgfgd~vE~Al~eAR~hL~eGt~ 39 (115)
T PF11501_consen 16 VRGFGDSVEEALEEARVHLAEGTC 39 (115)
T ss_dssp ---S-SSHHHHHHHHHHHHHHT-E
T ss_pred hhccchHHHHHHHHHHHHHhcCce
Confidence 346678999999999999999973
No 30
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=50.04 E-value=44 Score=29.76 Aligned_cols=73 Identities=21% Similarity=0.134 Sum_probs=49.2
Q ss_pred cceEecCCCCCCC----CccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCC-----CCHHHHHHHHHHc
Q 023546 14 AVDIVGTGGDGAN----TVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID-----LDPEGVRRCVDEA 84 (281)
Q Consensus 14 ~~Di~gtggdG~~----t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~-----~s~~~a~~~l~~~ 84 (281)
.+|+-||=++|.. -++=+.-+---+.+.|++++.=-|++..+.....+.|+.+|+++. .+-..+.+.|.+.
T Consensus 5 ~~D~DGtl~~~~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~~~~i~ts~~~~~~~l~~~ 84 (257)
T TIGR01458 5 LLDISGVLYISDAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDISEDEVFTPAPAARQLLEEK 84 (257)
T ss_pred EEeCCCeEEeCCCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCCCHHHeEcHHHHHHHHHHhc
Confidence 4677777555443 344333344456778999999888887777788899999999864 1224456667766
Q ss_pred Ce
Q 023546 85 GI 86 (281)
Q Consensus 85 g~ 86 (281)
++
T Consensus 85 ~~ 86 (257)
T TIGR01458 85 QL 86 (257)
T ss_pred CC
Confidence 54
No 31
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=47.50 E-value=13 Score=31.86 Aligned_cols=32 Identities=38% Similarity=0.462 Sum_probs=25.4
Q ss_pred ceEecCCCCCCCCccchHHHHHHHHcCCCcEEee
Q 023546 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQ 48 (281)
Q Consensus 15 ~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~H 48 (281)
+=+.|-||.|++| ++.-.|-.+|+.|.+|+.-
T Consensus 3 iav~gKGGvGKTt--~~~nLA~~la~~G~rvLli 34 (212)
T cd02117 3 IAIYGKGGIGKST--TSQNLSAALAEMGKKVLQV 34 (212)
T ss_pred EEEECCCcCcHHH--HHHHHHHHHHHCCCcEEEE
Confidence 4467999999986 4666788888999999864
No 32
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=46.38 E-value=1.1e+02 Score=28.04 Aligned_cols=123 Identities=17% Similarity=0.199 Sum_probs=60.4
Q ss_pred cceEecCCCCCCCCccchHHHHHHHHcCC-CcEEeeCCCCCCCcccHHHHHHH----c--CCCCCCCHHHHHHHHHHcCe
Q 023546 14 AVDIVGTGGDGANTVNISTGASILAAACG-AKVAKQGSRSSSSACGSADVLEA----L--GVVIDLDPEGVRRCVDEAGI 86 (281)
Q Consensus 14 ~~Di~gtggdG~~t~nis~~aa~vlA~~G-~~V~~HG~~~~~~~~gs~dvLe~----L--Gi~~~~s~~~a~~~l~~~g~ 86 (281)
.+|++|.-.++.+.+.-...+-..+...| +++..|.+...++ ....+.++. + |+.+..+++.. +.+.+.|+
T Consensus 138 G~Dl~g~E~~~~~~~~~f~~~~~~ar~~g~l~~t~HaGE~~~~-~~v~~~~~~~~~RIgHg~~~~~~p~~~-~~l~~~~i 215 (305)
T cd00443 138 GIDLVGDESKGENPLRDFYSYYEYARRLGLLGLTLHCGETGNR-EELLQALLLLPDRIGHGIFLLKHPELI-YLVKLRNI 215 (305)
T ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHHHcCCcceEEeecCCCCh-HHHHHHHHhccceeeceEecCCCHHHH-HHHHHcCC
Confidence 36766654444221111222333344569 9999999987322 123334432 2 34554555554 55666666
Q ss_pred EEEeCCccChhhh--------chHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCC
Q 023546 87 GFMMSTKYHPAMK--------FVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGL 151 (281)
Q Consensus 87 ~fl~~~~~~P~l~--------~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~ 151 (281)
.+-.-|.-+=.+. -+..++ +-|++-.+||=.| ++|+.++.+-|..+....|.
T Consensus 216 ~ie~CP~SN~~~~~~~~~~~hP~~~~~-~~G~~v~i~TDd~------------~~~~~~l~~E~~~~~~~~~l 275 (305)
T cd00443 216 PIEVCPTSNVVLGTVQSYEKHPFMRFF-KAGLPVSLSTDDP------------GIFGTSLSEEYSLAAKTFGL 275 (305)
T ss_pred EEEECcchhhhhcCCCChhhChHHHHH-HCCCeEEEeCCCC------------cccCCChHHHHHHHHHHcCc
Confidence 5554442211111 122232 2376666666444 45555666666666655543
No 33
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=45.37 E-value=2.8e+02 Score=26.53 Aligned_cols=129 Identities=14% Similarity=0.170 Sum_probs=68.9
Q ss_pred CcceEecCCCCCCCCccchHHHHHHHHc-------CCCcEEeeCCCCCCCcccHHHHH----HHcCCCCC--CCHHHHHH
Q 023546 13 DAVDIVGTGGDGANTVNISTGASILAAA-------CGAKVAKQGSRSSSSACGSADVL----EALGVVID--LDPEGVRR 79 (281)
Q Consensus 13 ~~~Di~gtggdG~~t~nis~~aa~vlA~-------~G~~V~~HG~~~~~~~~gs~dvL----e~LGi~~~--~s~~~a~~ 79 (281)
..+=++|..|.|+. |.++.+++. .|.+|..-..+ +.+.++.+-| +.+|+|+. .++++..+
T Consensus 175 ~vi~lvGptGvGKT-----TT~aKLA~~~~~~~~~~g~~V~lit~D--t~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~ 247 (388)
T PRK12723 175 RVFILVGPTGVGKT-----TTIAKLAAIYGINSDDKSLNIKIITID--NYRIGAKKQIQTYGDIMGIPVKAIESFKDLKE 247 (388)
T ss_pred eEEEEECCCCCCHH-----HHHHHHHHHHHhhhccCCCeEEEEecc--CccHHHHHHHHHHhhcCCcceEeeCcHHHHHH
Confidence 35668999999995 334444332 47778764443 3355544334 44788754 45566655
Q ss_pred HH---HHcCeEEEeCCccChhh-hchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeC-hhhHHHHHHHHHHcCCCeE
Q 023546 80 CV---DEAGIGFMMSTKYHPAM-KFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYN-ENLVLKMANALQRFGLKRA 154 (281)
Q Consensus 80 ~l---~~~g~~fl~~~~~~P~l-~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h-~~~~~~~~~~~~~lg~~~~ 154 (281)
.+ ....+.+++.+-.+|.- ..+..+++.+. .+. .|. -.+.|+.... ..-+....+.+..+|.++.
T Consensus 248 ~L~~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~------~~~---~~~-e~~LVlsat~~~~~~~~~~~~~~~~~~~~~ 317 (388)
T PRK12723 248 EITQSKDFDLVLVDTIGKSPKDFMKLAEMKELLN------ACG---RDA-EFHLAVSSTTKTSDVKEIFHQFSPFSYKTV 317 (388)
T ss_pred HHHHhCCCCEEEEcCCCCCccCHHHHHHHHHHHH------hcC---CCC-eEEEEEcCCCCHHHHHHHHHHhcCCCCCEE
Confidence 44 45677888887777632 12334443332 111 121 2344444433 3333344444555677666
Q ss_pred EEEe
Q 023546 155 LVVH 158 (281)
Q Consensus 155 lvv~ 158 (281)
++=|
T Consensus 318 I~TK 321 (388)
T PRK12723 318 IFTK 321 (388)
T ss_pred EEEe
Confidence 6666
No 34
>COG2313 IndA Uncharacterized enzyme involved in pigment biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=44.95 E-value=25 Score=31.78 Aligned_cols=78 Identities=31% Similarity=0.328 Sum_probs=48.5
Q ss_pred ecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcc-----c-HHHHHHHc---------CCCCCCCHHHHHHHHH
Q 023546 18 VGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSAC-----G-SADVLEAL---------GVVIDLDPEGVRRCVD 82 (281)
Q Consensus 18 ~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~-----g-s~dvLe~L---------Gi~~~~s~~~a~~~l~ 82 (281)
+-.|..|..| --+..++++.+|++|+-.|+-+--++. - |+|+.|-- |+..-++.+..-+.|+
T Consensus 102 vA~~~~gaTT---VAaTMi~A~~aGI~vfaTGGiGGVHrGAe~t~DISaDL~ELa~T~v~vV~AGaKsILDi~~TlE~LE 178 (310)
T COG2313 102 VAEGKNGATT---VAATMILAALAGIKVFATGGIGGVHRGAEHTFDISADLTELARTNVTVVCAGAKSILDIGLTLEVLE 178 (310)
T ss_pred HhcCcCCcch---HHHHHHHHHHcCceEEEecCcccccCCcccccccchhHHHHhcCCeEEEecCchhhhccHHHHHHHH
Confidence 4457777764 223445556679999999986632222 2 67766642 4444466777888888
Q ss_pred HcCeEEEeC-CccChhh
Q 023546 83 EAGIGFMMS-TKYHPAM 98 (281)
Q Consensus 83 ~~g~~fl~~-~~~~P~l 98 (281)
..|+-.+.. ..-.|++
T Consensus 179 T~gVPvvg~~t~~fPaF 195 (310)
T COG2313 179 TQGVPVVGYQTNEFPAF 195 (310)
T ss_pred hcCcceeecCCCcccch
Confidence 888866633 4445554
No 35
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=44.47 E-value=46 Score=30.03 Aligned_cols=71 Identities=13% Similarity=0.203 Sum_probs=42.9
Q ss_pred HHHHHHHcCeEEEeCCcc------ChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcC
Q 023546 77 VRRCVDEAGIGFMMSTKY------HPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFG 150 (281)
Q Consensus 77 a~~~l~~~g~~fl~~~~~------~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg 150 (281)
..+.|.+.+.-|+....- ...+.-...+++++|++++.|+..+=. ++.-.+.....+..+|
T Consensus 20 ~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~-------------n~~~l~~~L~~~~~~G 86 (272)
T TIGR00676 20 TVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCIGA-------------TREEIREILREYRELG 86 (272)
T ss_pred HHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCC-------------CHHHHHHHHHHHHHCC
Confidence 345566777666665332 112333355777888888877744422 2233344444557889
Q ss_pred CCeEEEEecC
Q 023546 151 LKRALVVHSE 160 (281)
Q Consensus 151 ~~~~lvv~Ge 160 (281)
.+++++++||
T Consensus 87 i~nvL~l~GD 96 (272)
T TIGR00676 87 IRHILALRGD 96 (272)
T ss_pred CCEEEEeCCC
Confidence 9999999983
No 36
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=43.67 E-value=96 Score=27.77 Aligned_cols=82 Identities=15% Similarity=0.242 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHHcCeEEEeCCccChhh----hc---hHHHHhhh--------CCCChhhhhhhccCCCCCCceEEeeeCh
Q 023546 72 LDPEGVRRCVDEAGIGFMMSTKYHPAM----KF---VRPVRKKL--------KVKTVFNILGPMLNPACVPFAVVGVYNE 136 (281)
Q Consensus 72 ~s~~~a~~~l~~~g~~fl~~~~~~P~l----~~---l~~lR~~l--------g~Rt~~ntl~~LlNP~~~~~~v~Gv~h~ 136 (281)
-+|.+..+.+.+.|+-+++.-++.-+. .. +..+.+.. |+|| .+.++.|+. ++..+.++|-+--
T Consensus 31 ~~P~~~a~~~~~~Ga~~lHlVDLdgA~~g~~~n~~~i~~i~~~~~~~vQvGGGIRs-~~~v~~ll~-~G~~rViiGt~av 108 (241)
T COG0106 31 DDPLEVAKKWSDQGAEWLHLVDLDGAKAGGPRNLEAIKEILEATDVPVQVGGGIRS-LEDVEALLD-AGVARVIIGTAAV 108 (241)
T ss_pred CCHHHHHHHHHHcCCcEEEEeeccccccCCcccHHHHHHHHHhCCCCEEeeCCcCC-HHHHHHHHH-CCCCEEEEeccee
Confidence 468888888999999998774333222 22 23333333 6776 588999999 7888888886555
Q ss_pred hhHHHHHHHHHHcCCCeEEE
Q 023546 137 NLVLKMANALQRFGLKRALV 156 (281)
Q Consensus 137 ~~~~~~~~~~~~lg~~~~lv 156 (281)
.=.+...++++..| ++.+|
T Consensus 109 ~~p~~v~~~~~~~g-~rivv 127 (241)
T COG0106 109 KNPDLVKELCEEYG-DRIVV 127 (241)
T ss_pred cCHHHHHHHHHHcC-CcEEE
Confidence 55566678888888 56554
No 37
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=43.56 E-value=1.2e+02 Score=24.79 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=15.1
Q ss_pred HHHHHHHcCCCcEEeeC
Q 023546 33 GASILAAACGAKVAKQG 49 (281)
Q Consensus 33 ~aa~vlA~~G~~V~~HG 49 (281)
-+|..+++.|.++..+|
T Consensus 41 n~a~~l~~LG~~~~~~~ 57 (196)
T cd00287 41 NVAVALARLGVSVTLVG 57 (196)
T ss_pred HHHHHHHHCCCcEEEEE
Confidence 36888999999999999
No 38
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=43.55 E-value=17 Score=32.63 Aligned_cols=32 Identities=28% Similarity=0.302 Sum_probs=25.5
Q ss_pred ceEecCCCCCCCCccchHHHHHHHHcCCCcEEee
Q 023546 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQ 48 (281)
Q Consensus 15 ~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~H 48 (281)
+=++|=||.|++| .+.-.|..||..|.+|+.-
T Consensus 4 i~~~gKGGVGKTT--~a~nLA~~La~~G~rVLli 35 (279)
T PRK13230 4 FCFYGKGGIGKST--TVCNIAAALAESGKKVLVV 35 (279)
T ss_pred EEEECCCCCcHHH--HHHHHHHHHHhCCCEEEEE
Confidence 4567999999986 3555777889999999875
No 39
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=43.50 E-value=16 Score=32.58 Aligned_cols=31 Identities=32% Similarity=0.445 Sum_probs=25.3
Q ss_pred ceEecCCCCCCCCccchHHHHHHHHcCCCcEEe
Q 023546 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAK 47 (281)
Q Consensus 15 ~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~ 47 (281)
|=+.|=||.|++| ++.-.|..||+.|.+|+.
T Consensus 3 ia~~gKGGVGKTT--~a~nLA~~La~~G~~Vll 33 (275)
T TIGR01287 3 IAIYGKGGIGKST--TTQNIAAALAEMGKKVMI 33 (275)
T ss_pred eEEeCCCcCcHHH--HHHHHHHHHHHCCCeEEE
Confidence 3467999999986 566688888899999986
No 40
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=43.12 E-value=1.6e+02 Score=27.56 Aligned_cols=97 Identities=19% Similarity=0.201 Sum_probs=61.3
Q ss_pred cchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHHHHHH-cCeEEEeCCccChhhhchHHHHhh
Q 023546 29 NISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDE-AGIGFMMSTKYHPAMKFVRPVRKK 107 (281)
Q Consensus 29 nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~~s~~~a~~~l~~-~g~~fl~~~~~~P~l~~l~~lR~~ 107 (281)
+|-|+.|.++|..|.+|.+-|.+ ++.+.+.-+. .+-.|++--.+.|.+..-.++.+.
T Consensus 11 swGTALA~~la~ng~~V~lw~r~----------------------~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a 68 (329)
T COG0240 11 SWGTALAKVLARNGHEVRLWGRD----------------------EEIVAEINETRENPKYLPGILLPPNLKATTDLAEA 68 (329)
T ss_pred hHHHHHHHHHHhcCCeeEEEecC----------------------HHHHHHHHhcCcCccccCCccCCcccccccCHHHH
Confidence 49999999999999999988764 3333333333 466677766666666666666554
Q ss_pred hCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEec-CCcc
Q 023546 108 LKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLD 163 (281)
Q Consensus 108 lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~G-eG~d 163 (281)
+. ++...|+.|.|..+.+...++-..+. +...+|.- .|++
T Consensus 69 ~~---------------~ad~iv~avPs~~~r~v~~~l~~~l~-~~~~iv~~sKGie 109 (329)
T COG0240 69 LD---------------GADIIVIAVPSQALREVLRQLKPLLL-KDAIIVSATKGLE 109 (329)
T ss_pred Hh---------------cCCEEEEECChHHHHHHHHHHhhhcc-CCCeEEEEecccc
Confidence 33 25677788888777666666533332 23444432 5543
No 41
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=43.11 E-value=3e+02 Score=26.90 Aligned_cols=131 Identities=10% Similarity=0.135 Sum_probs=73.9
Q ss_pred CcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHH----HHcCCCCC--CCHHHHHHHHHH---
Q 023546 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVL----EALGVVID--LDPEGVRRCVDE--- 83 (281)
Q Consensus 13 ~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvL----e~LGi~~~--~s~~~a~~~l~~--- 83 (281)
..+=++|.+|.|+.|+=.- .|..+...|.+|..--.+ +.+.++.+-| +.+|+++. .++++..+.++.
T Consensus 242 ~vI~LVGptGvGKTTTiaK--LA~~L~~~GkkVglI~aD--t~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAK--MAWQFHGKKKTVGFITTD--HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred cEEEEECCCCCcHHHHHHH--HHHHHHHcCCcEEEEecC--CcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 4577999999999642111 222345668888764433 3455543333 35688853 677777777743
Q ss_pred ---cCeEEEeCCccChh-hhchHHHHhhhCCCChhhhhhhccCCCCCCceEEee-eChhhHHHHHHHHHHcCCCeEEEEe
Q 023546 84 ---AGIGFMMSTKYHPA-MKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGV-YNENLVLKMANALQRFGLKRALVVH 158 (281)
Q Consensus 84 ---~g~~fl~~~~~~P~-l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv-~h~~~~~~~~~~~~~lg~~~~lvv~ 158 (281)
..+.+++.+--++. ...+..+++.+... .|- ..+.|++. ....-.....+.++.+++++.++=|
T Consensus 318 ~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~----------~Pd-evlLVLsATtk~~d~~~i~~~F~~~~idglI~TK 386 (436)
T PRK11889 318 EARVDYILIDTAGKNYRASETVEEMIETMGQV----------EPD-YICLTLSASMKSKDMIEIITNFKDIHIDGIVFTK 386 (436)
T ss_pred ccCCCEEEEeCccccCcCHHHHHHHHHHHhhc----------CCC-eEEEEECCccChHHHHHHHHHhcCCCCCEEEEEc
Confidence 36788888655443 22355555544321 132 22445543 2333335566677778887666666
No 42
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=42.92 E-value=17 Score=32.31 Aligned_cols=31 Identities=35% Similarity=0.470 Sum_probs=24.7
Q ss_pred eEecCCCCCCCCccchHHHHHHHHcCCCcEEee
Q 023546 16 DIVGTGGDGANTVNISTGASILAAACGAKVAKQ 48 (281)
Q Consensus 16 Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~H 48 (281)
=+.|-||.|+.| ++.-.|..+|..|.+|+.-
T Consensus 4 ~v~gKGGvGKTT--~a~nLA~~la~~G~rvlli 34 (267)
T cd02032 4 AVYGKGGIGKST--TSSNLSVALAKRGKKVLQI 34 (267)
T ss_pred EEecCCCCCHHH--HHHHHHHHHHHCCCcEEEE
Confidence 366889999986 4666777889999999853
No 43
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=42.48 E-value=56 Score=29.75 Aligned_cols=71 Identities=11% Similarity=0.053 Sum_probs=45.5
Q ss_pred HHHHHHHcCeEEEeCCccC------hhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcC
Q 023546 77 VRRCVDEAGIGFMMSTKYH------PAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFG 150 (281)
Q Consensus 77 a~~~l~~~g~~fl~~~~~~------P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg 150 (281)
..+.|.+.+..|+....-. -.+.-...|++++|++++.|+..+=.|. ..+.+ ...-+..+|
T Consensus 21 ~~~~l~~~~p~fvsvT~~~~~~~~~~t~~~~~~l~~~~g~~~i~Hltcr~~~~------------~~l~~-~L~~~~~~G 87 (281)
T TIGR00677 21 RMDRMVASGPLFIDITWGAGGTTAELTLTIASRAQNVVGVETCMHLTCTNMPI------------EMIDD-ALERAYSNG 87 (281)
T ss_pred HHHHHhhCCCCEEEeccCCCCcchhhHHHHHHHHHHhcCCCeeEEeccCCCCH------------HHHHH-HHHHHHHCC
Confidence 3344566777777664422 2455667788899999988885543332 22333 333447889
Q ss_pred CCeEEEEecC
Q 023546 151 LKRALVVHSE 160 (281)
Q Consensus 151 ~~~~lvv~Ge 160 (281)
.++.++++||
T Consensus 88 i~niLal~GD 97 (281)
T TIGR00677 88 IQNILALRGD 97 (281)
T ss_pred CCEEEEECCC
Confidence 9999999994
No 44
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=42.19 E-value=22 Score=29.13 Aligned_cols=29 Identities=31% Similarity=0.447 Sum_probs=23.4
Q ss_pred ecCCCCCCCCccchHHHHHHHHcCCCcEEee
Q 023546 18 VGTGGDGANTVNISTGASILAAACGAKVAKQ 48 (281)
Q Consensus 18 ~gtggdG~~t~nis~~aa~vlA~~G~~V~~H 48 (281)
.+-||.|+.| ++...|..+|+.|.+|+.-
T Consensus 6 s~kgG~GKTt--~a~~LA~~la~~g~~vllv 34 (169)
T cd02037 6 SGKGGVGKST--VAVNLALALAKLGYKVGLL 34 (169)
T ss_pred cCCCcCChhH--HHHHHHHHHHHcCCcEEEE
Confidence 3558999986 5777788899999999875
No 45
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=42.11 E-value=71 Score=23.93 Aligned_cols=84 Identities=17% Similarity=0.209 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHcCeEEEeCCccChhhhchHHHHhhhCCCChhhhhhhccCCC--CCCceEEeeeChhhHHHHHHHHHH
Q 023546 71 DLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPA--CVPFAVVGVYNENLVLKMANALQR 148 (281)
Q Consensus 71 ~~s~~~a~~~l~~~g~~fl~~~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~--~~~~~v~Gv~h~~~~~~~~~~~~~ 148 (281)
..+++++.+.+++.+..+++... |.-..--.+..-+-+ +...+...+++. ..+..++. ++-......+..++.
T Consensus 6 ~is~~el~~~l~~~~~~ivDvR~--~~e~~~ghi~gA~~i--p~~~l~~~~~~~~~~~~ivv~c-~~g~~s~~a~~~L~~ 80 (108)
T PRK00162 6 CINVEQAHQKLQEGGAVLVDIRD--PQSFAMGHAPGAFHL--TNDSLGAFMRQADFDTPVMVMC-YHGNSSQGAAQYLLQ 80 (108)
T ss_pred ccCHHHHHHHHHcCCCEEEEcCC--HHHHhcCCCCCCeEC--CHHHHHHHHHhcCCCCCEEEEe-CCCCCHHHHHHHHHH
Confidence 46788898888877777777742 111111111111111 112222233333 23344443 233344566667888
Q ss_pred cCCCeEEEEec
Q 023546 149 FGLKRALVVHS 159 (281)
Q Consensus 149 lg~~~~lvv~G 159 (281)
.|++++.++.|
T Consensus 81 ~G~~~v~~l~G 91 (108)
T PRK00162 81 QGFDVVYSIDG 91 (108)
T ss_pred CCchheEEecC
Confidence 88887777665
No 46
>PF02641 DUF190: Uncharacterized ACR, COG1993; InterPro: IPR003793 This is an uncharacterised domain found in proteins of unknown function.; PDB: 2DCL_C 1O51_A.
Probab=41.58 E-value=41 Score=25.59 Aligned_cols=31 Identities=19% Similarity=0.184 Sum_probs=24.5
Q ss_pred eeChhhHHHHHHHHHHcCCCeEEEEec-CCcc
Q 023546 133 VYNENLVLKMANALQRFGLKRALVVHS-EGLD 163 (281)
Q Consensus 133 v~h~~~~~~~~~~~~~lg~~~~lvv~G-eG~d 163 (281)
+.++++.+.+.+.++..|...+.|++| +|.-
T Consensus 16 ~~g~~l~~~ll~~~~~~gi~GaTV~rgi~G~G 47 (101)
T PF02641_consen 16 WGGKPLYEWLLERAREAGIAGATVFRGIEGFG 47 (101)
T ss_dssp ETTEEHHHHHHHHHHHTT-SEEEEEE-SEEEE
T ss_pred cCceEHHHHHHHHHHHCCCCeEEEEcceeeeC
Confidence 346788889999999999999999999 8843
No 47
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=41.34 E-value=94 Score=29.96 Aligned_cols=129 Identities=24% Similarity=0.353 Sum_probs=70.7
Q ss_pred eEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHHHHHHcCeEEEeC--Cc
Q 023546 16 DIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMS--TK 93 (281)
Q Consensus 16 Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~~s~~~a~~~l~~~g~~fl~~--~~ 93 (281)
-++|-|+-|. .++|.+|++.|+.|. |.+.-... ..+-|+.+|+.+... .. ...+++.-+.++.. |.
T Consensus 3 ~~iGiggsGm------~~la~~L~~~G~~v~--~~D~~~~~--~~~~l~~~gi~~~~g-~~-~~~~~~~d~vV~spgi~~ 70 (448)
T TIGR01082 3 HFVGIGGIGM------SGIAEILLNRGYQVS--GSDIAENA--TTKRLEALGIPIYIG-HS-AENLDDADVVVVSAAIKD 70 (448)
T ss_pred EEEEECHHHH------HHHHHHHHHCCCeEE--EECCCcch--HHHHHHHCcCEEeCC-CC-HHHCCCCCEEEECCCCCC
Confidence 3567676553 236788899999997 44432222 445688899877543 11 22344444444322 44
Q ss_pred cChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChh-hHHHHHHHHHHcCCCeEEEEec
Q 023546 94 YHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNEN-LVLKMANALQRFGLKRALVVHS 159 (281)
Q Consensus 94 ~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~-~~~~~~~~~~~lg~~~~lvv~G 159 (281)
-+|.+.... ++.+-+.+-.-.+..++++ .....|+|-.=|. .-.++..+++..|.+...++-|
T Consensus 71 ~~p~~~~a~--~~~i~v~~~~el~~~~~~~-~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg 134 (448)
T TIGR01082 71 DNPEIVEAK--ERGIPVIRRAEMLAELMRF-RHSIAVAGTHGKTTTTAMIAVILKEAGLDPTVVVGG 134 (448)
T ss_pred CCHHHHHHH--HcCCceEeHHHHHHHHHhc-CcEEEEECCCChHHHHHHHHHHHHHcCCCCeEEECc
Confidence 456554432 2233344555556666643 1344555555554 4456677777888744444444
No 48
>COG2313 IndA Uncharacterized enzyme involved in pigment biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=39.92 E-value=2.2e+02 Score=25.88 Aligned_cols=91 Identities=19% Similarity=0.152 Sum_probs=55.3
Q ss_pred cCCCCCCC---CccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCC-CCHHHHHHHHHHcCeEEEeCCcc
Q 023546 19 GTGGDGAN---TVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID-LDPEGVRRCVDEAGIGFMMSTKY 94 (281)
Q Consensus 19 gtggdG~~---t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~-~s~~~a~~~l~~~g~~fl~~~~~ 94 (281)
|+||..+. ||-||-=+- =+|+.++-|+--|.+++=.-.-+-++||..|+|+- ...++....+.+..--=.++...
T Consensus 131 GiGGVHrGAe~t~DISaDL~-ELa~T~v~vV~AGaKsILDi~~TlE~LET~gVPvvg~~t~~fPaF~sR~Sg~~~pl~l~ 209 (310)
T COG2313 131 GIGGVHRGAEHTFDISADLT-ELARTNVTVVCAGAKSILDIGLTLEVLETQGVPVVGYQTNEFPAFFSRESGFRVPLRLE 209 (310)
T ss_pred CcccccCCcccccccchhHH-HHhcCCeEEEecCchhhhccHHHHHHHHhcCcceeecCCCcccchhcccCCCcCccccC
Confidence 45555554 888875543 35888899998888876666668999999999964 33444544444322212333344
Q ss_pred Chh-hhchHHHHhhhCC
Q 023546 95 HPA-MKFVRPVRKKLKV 110 (281)
Q Consensus 95 ~P~-l~~l~~lR~~lg~ 110 (281)
.|+ ..+++..|++||+
T Consensus 210 ~pe~ia~~~~t~~~lgl 226 (310)
T COG2313 210 SPEEIARILATKWQLGL 226 (310)
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 443 2344555566654
No 49
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=39.71 E-value=21 Score=31.54 Aligned_cols=31 Identities=35% Similarity=0.453 Sum_probs=24.4
Q ss_pred ceEecCCCCCCCCccchHHHHHHHHcCCCcEEe
Q 023546 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAK 47 (281)
Q Consensus 15 ~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~ 47 (281)
|=++|-||.|++| ++.-.|..||+.|.+|+.
T Consensus 4 iav~~KGGvGKTT--~~~nLA~~La~~G~kVll 34 (270)
T cd02040 4 IAIYGKGGIGKST--TTQNLSAALAEMGKKVMI 34 (270)
T ss_pred EEEEeCCcCCHHH--HHHHHHHHHHhCCCeEEE
Confidence 4456889999986 455677778899999995
No 50
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=39.18 E-value=77 Score=28.41 Aligned_cols=74 Identities=8% Similarity=0.065 Sum_probs=45.0
Q ss_pred HHHHHHHHHHcCeEEEeCCcc------ChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHH
Q 023546 74 PEGVRRCVDEAGIGFMMSTKY------HPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQ 147 (281)
Q Consensus 74 ~~~a~~~l~~~g~~fl~~~~~------~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~ 147 (281)
.+++.+.+...+.-|+..... ...+.....++++.|++++.|+..+=.|. .-.+.....+.
T Consensus 17 l~~~~~~~~~~~~d~v~Vt~~~~g~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~-------------~~l~~~L~~~~ 83 (274)
T cd00537 17 LEAAADLLGALDPDFVSVTDGAGGSTRDMTLLAAARILQEGGIEPIPHLTCRDRNR-------------IELQSILLGAH 83 (274)
T ss_pred HHHHHHHhhcCCCCEEEeCCCCCCchhhhHHHHHHHHHHhcCCCeeeecccCCCCH-------------HHHHHHHHHHH
Confidence 345555666655555555332 22344455677788888888875553333 23344444557
Q ss_pred HcCCCeEEEEecC
Q 023546 148 RFGLKRALVVHSE 160 (281)
Q Consensus 148 ~lg~~~~lvv~Ge 160 (281)
.+|.+++++++||
T Consensus 84 ~~Gi~~iL~l~GD 96 (274)
T cd00537 84 ALGIRNILALRGD 96 (274)
T ss_pred HCCCCeEEEeCCC
Confidence 7899999999994
No 51
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=38.66 E-value=22 Score=31.77 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=25.1
Q ss_pred ceEecCCCCCCCCccchHHHHHHHHcCCCcEEee
Q 023546 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQ 48 (281)
Q Consensus 15 ~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~H 48 (281)
+=++|=||.|++| ++.-.|..+|+.|.+|+.-
T Consensus 4 iav~gKGGVGKTT--~a~nLA~~La~~G~rVllv 35 (273)
T PRK13232 4 IAIYGKGGIGKST--TTQNLTAALSTMGNKILLV 35 (273)
T ss_pred EEEECCCCCcHHH--HHHHHHHHHHhhCCCeEEE
Confidence 4456889999985 4556777889999999875
No 52
>PRK10853 putative reductase; Provisional
Probab=37.67 E-value=24 Score=27.77 Aligned_cols=52 Identities=15% Similarity=0.205 Sum_probs=39.2
Q ss_pred CCCCCCCHHHHHHHHHHcCeEEEeCC--ccChhhhchHHHHhhhCCCChhhhhh
Q 023546 67 GVVIDLDPEGVRRCVDEAGIGFMMST--KYHPAMKFVRPVRKKLKVKTVFNILG 118 (281)
Q Consensus 67 Gi~~~~s~~~a~~~l~~~g~~fl~~~--~~~P~l~~l~~lR~~lg~Rt~~ntl~ 118 (281)
|++-+.+-..|.+.|+++|+.|-+.. .-.|.-..|..+=+++|+..++|+=+
T Consensus 6 ~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l~~~g~~~l~n~~~ 59 (118)
T PRK10853 6 GIKNCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFIDELGWEALLNTRG 59 (118)
T ss_pred cCCCCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHHHHcCHHHHHhcCC
Confidence 67778888899999999999887775 44667777777777888665555533
No 53
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=36.86 E-value=24 Score=26.79 Aligned_cols=26 Identities=42% Similarity=0.364 Sum_probs=21.2
Q ss_pred eEecCCCCCCCCccchHHHHHHHHcCCCcEE
Q 023546 16 DIVGTGGDGANTVNISTGASILAAACGAKVA 46 (281)
Q Consensus 16 Di~gtggdG~~t~nis~~aa~vlA~~G~~V~ 46 (281)
=|+|++|.|+ ||++..++...|++++
T Consensus 3 ~I~G~~gsGK-----ST~a~~La~~~~~~~i 28 (121)
T PF13207_consen 3 IISGPPGSGK-----STLAKELAERLGFPVI 28 (121)
T ss_dssp EEEESTTSSH-----HHHHHHHHHHHTCEEE
T ss_pred EEECCCCCCH-----HHHHHHHHHHHCCeEE
Confidence 3789999999 7788888777798876
No 54
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=36.32 E-value=26 Score=31.64 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=25.9
Q ss_pred EecCCCCCCCCccchHHHHHHHHcCCCcEEeeCC
Q 023546 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGS 50 (281)
Q Consensus 17 i~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~ 50 (281)
..|.||+|++| ++.-+|..+|+.|.+|..-=.
T Consensus 63 ~S~kgGvGKSt--va~nLA~alA~~G~rVlliDa 94 (265)
T COG0489 63 TSGKGGVGKST--VAVNLAAALAQLGKRVLLLDA 94 (265)
T ss_pred EeCCCCCcHHH--HHHHHHHHHHhcCCcEEEEeC
Confidence 46789999986 577789999999999986433
No 55
>PF08844 DUF1815: Domain of unknown function (DUF1815); InterPro: IPR014943 This entry is about 100 amino acids in length and is functionally uncharacterised.
Probab=36.19 E-value=1.7e+02 Score=22.29 Aligned_cols=49 Identities=27% Similarity=0.409 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCCCeEEEEe-cCCccccCcCCceEEEEEeCCeEEEEEEccCCCCCC
Q 023546 140 LKMANALQRFGLKRALVVH-SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIP 194 (281)
Q Consensus 140 ~~~~~~~~~lg~~~~lvv~-GeG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~ 194 (281)
+-++..++..|+ -+.+.. |+|.| -++.+.+..+.++...+|.+ .|||+.
T Consensus 20 qALa~~Le~rG~-~AsCYtC~dG~~---~~~ASFmv~lg~~HliRFLV--Sd~GIs 69 (105)
T PF08844_consen 20 QALAIVLERRGY-LASCYTCGDGRD---MNSASFMVSLGDNHLIRFLV--SDYGIS 69 (105)
T ss_pred HHHHHHHHhCCc-eeEEEecCCCCC---CCceeEEEEcCCCcEEEEEE--ecCCee
Confidence 345667778898 455554 57654 34556677777787777776 688985
No 56
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=35.81 E-value=30 Score=24.49 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=23.0
Q ss_pred EecCCCCCCCCccchHHHHHHHHcCCCcEEeeC
Q 023546 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQG 49 (281)
Q Consensus 17 i~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG 49 (281)
+.|.+|.|+.+ ++...+..+++.|.+|..-.
T Consensus 4 ~~g~~G~Gktt--~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 4 VTGKGGVGKTT--LAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EECCCCCCHHH--HHHHHHHHHHHCCCeEEEEC
Confidence 56778888875 45666777778899988655
No 57
>PRK12928 lipoyl synthase; Provisional
Probab=35.14 E-value=1.7e+02 Score=26.71 Aligned_cols=109 Identities=14% Similarity=0.169 Sum_probs=72.9
Q ss_pred HHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHHHHH---HcC--e----EEEe--CCccChhhhchHHH
Q 023546 36 ILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVD---EAG--I----GFMM--STKYHPAMKFVRPV 104 (281)
Q Consensus 36 ~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~~s~~~a~~~l~---~~g--~----~fl~--~~~~~P~l~~l~~l 104 (281)
..+.++|..|+.|+-. ++.++++.+.-. .+.++..+.++ +.| + .+|. -+..---...+..+
T Consensus 157 ~~l~~Ag~~i~~hnlE------t~~~vl~~m~r~--~t~e~~le~l~~ak~~gp~i~~~s~iIvG~GET~ed~~etl~~L 228 (290)
T PRK12928 157 ATVLAAKPDVFNHNLE------TVPRLQKAVRRG--ADYQRSLDLLARAKELAPDIPTKSGLMLGLGETEDEVIETLRDL 228 (290)
T ss_pred HHHHHcCchhhcccCc------CcHHHHHHhCCC--CCHHHHHHHHHHHHHhCCCceecccEEEeCCCCHHHHHHHHHHH
Confidence 3355577888888742 347888888532 45555554443 344 2 2222 24554555555566
Q ss_pred HhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEE
Q 023546 105 RKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRAL 155 (281)
Q Consensus 105 R~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~l 155 (281)
| ++++ -+=++++.+.|.....-|..+++|+-.+.+.+.+..+|+..+.
T Consensus 229 r-el~~--d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~~ 276 (290)
T PRK12928 229 R-AVGC--DRLTIGQYLRPSLAHLPVQRYWTPEEFEALGQIARELGFSHVR 276 (290)
T ss_pred H-hcCC--CEEEEEcCCCCCccCCceeeccCHHHHHHHHHHHHHcCCceeE
Confidence 5 4666 3335678889998889999999999999999999999996543
No 58
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=34.24 E-value=30 Score=31.67 Aligned_cols=36 Identities=31% Similarity=0.510 Sum_probs=28.0
Q ss_pred ceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCC
Q 023546 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRS 52 (281)
Q Consensus 15 ~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~ 52 (281)
|=++|-||.|++| ++.-.|..+|..|.+|+.-..+.
T Consensus 3 Iav~gKGGvGKTT--~a~nLA~~La~~g~rVLlID~Dp 38 (296)
T TIGR02016 3 IAIYGKGGSGKSF--TTTNLSHMMAEMGKRVLQLGCDP 38 (296)
T ss_pred EEEECCCCCCHHH--HHHHHHHHHHHCCCeEEEEEecC
Confidence 3356899999986 57778888889999999765543
No 59
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=34.06 E-value=29 Score=30.85 Aligned_cols=33 Identities=33% Similarity=0.417 Sum_probs=25.0
Q ss_pred cceEecCCCCCCCCccchHHHHHHHHcCCCcEEee
Q 023546 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQ 48 (281)
Q Consensus 14 ~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~H 48 (281)
.|=+++-||.|++| ++.-.|-.+|..|.+|+.-
T Consensus 4 iIav~~KGGVGKTT--~~~nLA~~la~~G~kVLli 36 (270)
T PRK13185 4 VLAVYGKGGIGKST--TSSNLSAAFAKLGKKVLQI 36 (270)
T ss_pred EEEEECCCCCCHHH--HHHHHHHHHHHCCCeEEEE
Confidence 34456889999986 4555677788999999854
No 60
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=33.91 E-value=38 Score=23.44 Aligned_cols=25 Identities=12% Similarity=0.094 Sum_probs=19.6
Q ss_pred HHHHHHHHcCeEEEeCCccChhhhc
Q 023546 76 GVRRCVDEAGIGFMMSTKYHPAMKF 100 (281)
Q Consensus 76 ~a~~~l~~~g~~fl~~~~~~P~l~~ 100 (281)
+++..|.+.||.|++.|.-..+-..
T Consensus 14 E~A~~La~~GIRFVpiPv~~dee~~ 38 (61)
T PF07131_consen 14 EMAHSLAHIGIRFVPIPVVTDEEFH 38 (61)
T ss_pred HHHHHHHHcCceeeccccccHHHHH
Confidence 4566899999999999987765433
No 61
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=33.83 E-value=98 Score=28.42 Aligned_cols=46 Identities=7% Similarity=0.165 Sum_probs=31.0
Q ss_pred HHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEecC
Q 023546 102 RPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSE 160 (281)
Q Consensus 102 ~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~Ge 160 (281)
..++++.|++++.|+..+-.| +.-...+..-+..+|.+++++++||
T Consensus 75 ~~i~~~~g~~~i~Hltcr~~n-------------~~~l~~~L~~~~~~GI~niLaLrGD 120 (296)
T PRK09432 75 KGIKKRTGLEAAPHLTCIDAT-------------PDELRTIAKDYWNNGIRHIVALRGD 120 (296)
T ss_pred HHHHHHhCCCeeeecccCCCC-------------HHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 456678899888887544322 2333444445588899999999984
No 62
>PRK13236 nitrogenase reductase; Reviewed
Probab=33.75 E-value=31 Score=31.51 Aligned_cols=76 Identities=21% Similarity=0.254 Sum_probs=44.5
Q ss_pred cceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCC----------CCcccHHHHHHHcCCCCCCCHHHHHHHHHH
Q 023546 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSS----------SSACGSADVLEALGVVIDLDPEGVRRCVDE 83 (281)
Q Consensus 14 ~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~----------~~~~gs~dvLe~LGi~~~~s~~~a~~~l~~ 83 (281)
++-+.|=||.|+.| ++.-.|..||+.|.+|+.-..+.. .++....|++..-+.--..+.+++.. -..
T Consensus 8 ~~~~~GKGGVGKTt--~a~NLA~~La~~G~rVLliD~D~q~~~~~~l~~~~~~~tl~d~~~~~~~~~~~~l~~~i~-~~~ 84 (296)
T PRK13236 8 QIAFYGKGGIGKST--TSQNTLAAMAEMGQRILIVGCDPKADSTRLMLHSKAQTTVLHLAAERGAVEDLELHEVML-TGF 84 (296)
T ss_pred EEEEECCCcCCHHH--HHHHHHHHHHHCCCcEEEEEccCCCCccchhccCCCCCCHHHHHHhcCCccCCCHHHhhe-eCC
Confidence 45678999999985 455567778899999997533221 11223455554322111234555532 123
Q ss_pred cCeEEEeCC
Q 023546 84 AGIGFMMST 92 (281)
Q Consensus 84 ~g~~fl~~~ 92 (281)
.|+-++++.
T Consensus 85 ~gv~llpa~ 93 (296)
T PRK13236 85 RGVKCVESG 93 (296)
T ss_pred CCeEEEECC
Confidence 588888864
No 63
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=33.65 E-value=31 Score=31.47 Aligned_cols=34 Identities=38% Similarity=0.503 Sum_probs=25.9
Q ss_pred ceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCC
Q 023546 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQGS 50 (281)
Q Consensus 15 ~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~ 50 (281)
+=++|=||.|+.| .+.-.|..||..|.+|+.-..
T Consensus 3 ia~~gKGGVGKTT--ta~nLA~~La~~G~rVLlID~ 36 (290)
T CHL00072 3 LAVYGKGGIGKST--TSCNISIALARRGKKVLQIGC 36 (290)
T ss_pred EEEECCCCCcHHH--HHHHHHHHHHHCCCeEEEEec
Confidence 3468889999986 355567778999999997443
No 64
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=33.39 E-value=1.1e+02 Score=28.04 Aligned_cols=64 Identities=16% Similarity=0.115 Sum_probs=45.0
Q ss_pred HHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHHHH--HHcCeEEEeCCccChh
Q 023546 34 ASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCV--DEAGIGFMMSTKYHPA 97 (281)
Q Consensus 34 aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~~s~~~a~~~l--~~~g~~fl~~~~~~P~ 97 (281)
.+.-.++.|+.|+++|.++++-..|+.--+..=|+.+..+++++++.- .+..++|+.|-.++..
T Consensus 106 ~v~~~~~~G~~iIliG~~gHpEv~Gt~Gq~~~~~~~lve~~~d~~~l~~~~~~~l~~~tQTTls~d 171 (294)
T COG0761 106 EVERYAREGYEIILIGHKGHPEVIGTMGQYPEGGVLLVESVEDVANLKVQLPDKLAFVTQTTLSVD 171 (294)
T ss_pred HHHHHHhCCCEEEEEccCCCCceeeeccccCCCceEEEecHHHHHhcccCCcccEEEEeeeecCHH
Confidence 355568899999999999998655532211111566667888888874 3448999999777654
No 65
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=33.21 E-value=27 Score=27.85 Aligned_cols=55 Identities=15% Similarity=0.067 Sum_probs=42.5
Q ss_pred CCCCCCCHHHHHHHHHHcCeEEEeCC--ccChhhhchHHHHhhhCCCChhhhhhhcc
Q 023546 67 GVVIDLDPEGVRRCVDEAGIGFMMST--KYHPAMKFVRPVRKKLKVKTVFNILGPML 121 (281)
Q Consensus 67 Gi~~~~s~~~a~~~l~~~g~~fl~~~--~~~P~l~~l~~lR~~lg~Rt~~ntl~~Ll 121 (281)
|+|-+.+--+|.+.|+++|+.|-+.. .-.|.-..|..+=+.+|.+.+||+=+...
T Consensus 7 ~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l~~~g~~~lin~~~~~~ 63 (126)
T TIGR01616 7 EKPGCANNARQKAALKASGHDVEVQDILKEPWHADTLRPYFGNKPVGSWFNRAAPRV 63 (126)
T ss_pred eCCCCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHHHHcCHHHHHhccchHh
Confidence 67778888999999999999887775 45677777888777788777777765543
No 66
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=33.09 E-value=49 Score=30.30 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=24.8
Q ss_pred ecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCC
Q 023546 18 VGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSS 54 (281)
Q Consensus 18 ~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~ 54 (281)
+| -|.+...+++-.+..+ -...++|.++||+.+.+
T Consensus 180 HG-~y~~~p~Ld~~~L~~I-~~~~~iPLVlHGgSG~~ 214 (284)
T PRK12737 180 HG-LYKGEPKLDFERLAEI-REKVSIPLVLHGASGVP 214 (284)
T ss_pred cc-ccCCCCcCCHHHHHHH-HHHhCCCEEEeCCCCCC
Confidence 44 6766556777766665 45568999999997743
No 67
>PLN02428 lipoic acid synthase
Probab=33.02 E-value=2.4e+02 Score=26.73 Aligned_cols=112 Identities=13% Similarity=0.115 Sum_probs=71.4
Q ss_pred HHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHHHHH---Hc--Ce----EEEe--CCccChhhhchH
Q 023546 34 ASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVD---EA--GI----GFMM--STKYHPAMKFVR 102 (281)
Q Consensus 34 aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~~s~~~a~~~l~---~~--g~----~fl~--~~~~~P~l~~l~ 102 (281)
+.-.++.+|+.++-|+-.. +..++..+.- -..+.++..+.|+ +. |+ .||. -+..---...+.
T Consensus 197 lL~~L~eAG~d~i~hnlET------v~rL~~~Ir~-~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGLGET~Edv~e~l~ 269 (349)
T PLN02428 197 AVETVATSGLDVFAHNIET------VERLQRIVRD-PRAGYKQSLDVLKHAKESKPGLLTKTSIMLGLGETDEEVVQTME 269 (349)
T ss_pred HHHHHHHcCCCEEccCccC------cHHHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCeEEEeEEEecCCCHHHHHHHHH
Confidence 5566778999998888653 2334444431 1234444443332 22 32 2222 244444444445
Q ss_pred HHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEE
Q 023546 103 PVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRAL 155 (281)
Q Consensus 103 ~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~l 155 (281)
.+| ++|+. +-+++..+.|......|.-+.||+-.+.+.+.+..+|+..+.
T Consensus 270 ~Lr-elgvd--~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~ 319 (349)
T PLN02428 270 DLR-AAGVD--VVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVA 319 (349)
T ss_pred HHH-HcCCC--EEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEE
Confidence 554 46653 347888899998899999999999999999999999997543
No 68
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=33.00 E-value=42 Score=28.60 Aligned_cols=26 Identities=38% Similarity=0.519 Sum_probs=19.4
Q ss_pred ceEecCCCCCCCCccchHHHHHHHHcCCCcEE
Q 023546 15 VDIVGTGGDGANTVNISTGASILAAACGAKVA 46 (281)
Q Consensus 15 ~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~ 46 (281)
+-|.||||.|+ ||.+-++. ..|+++.
T Consensus 3 I~ITGTPGvGK-----TT~~~~L~-~lg~~~i 28 (180)
T COG1936 3 IAITGTPGVGK-----TTVCKLLR-ELGYKVI 28 (180)
T ss_pred EEEeCCCCCch-----HHHHHHHH-HhCCcee
Confidence 55889999999 44555554 8888887
No 69
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=32.75 E-value=38 Score=31.24 Aligned_cols=114 Identities=22% Similarity=0.200 Sum_probs=69.1
Q ss_pred EecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCC---CCCcccHHHHHHHcCCCCCCCHHHHHHHHHHcCeEEEeC-C
Q 023546 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRS---SSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMS-T 92 (281)
Q Consensus 17 i~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~---~~~~~gs~dvLe~LGi~~~~s~~~a~~~l~~~g~~fl~~-~ 92 (281)
+.|||+-|.. +...+++.-|.+++--=+++ .+-..|-.--+..+||....+.+..- +++.. -
T Consensus 7 qyGtG~vGv~------air~l~akpe~elvgawv~s~ak~Gkdlgelagl~dlgV~a~~~~~avl--------Atl~~~~ 72 (350)
T COG3804 7 QYGTGSVGVA------AIRGLLAKPELELVGAWVHSAAKSGKDLGELAGLPDLGVIATNSIDAVL--------ATLADAV 72 (350)
T ss_pred EeccchHHHH------HHHHHHcCCCCceEEEEecCcccccccHHHhcCCCCceeEeecccccce--------eccccce
Confidence 5799987763 45667788798887322222 22223333334447887666665553 33332 2
Q ss_pred ccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCC
Q 023546 93 KYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGL 151 (281)
Q Consensus 93 ~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~ 151 (281)
.|.|.+..+-++|+-|+ .=+|.+.+ ++..|.=+++.|+..++.-+.+.+.|-
T Consensus 73 ~y~~~~~~~~~y~rlL~--aGiNVv~~-----g~~l~yPw~~~PelaeKpl~lAaraGn 124 (350)
T COG3804 73 IYAPLLPSVDEYARLLR--AGINVVTP-----GPVLQYPWFYPPELAEKPLELAARAGN 124 (350)
T ss_pred eeecccchHHHHHHHHH--cCCceecc-----CccccCCCcCChHHhhchHHHHHhcCC
Confidence 22333334667777664 36777654 223555589999999999999999985
No 70
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=32.64 E-value=3.7e+02 Score=26.51 Aligned_cols=132 Identities=22% Similarity=0.339 Sum_probs=84.8
Q ss_pred cceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHHHHHHcCeEEEeC-C
Q 023546 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMS-T 92 (281)
Q Consensus 14 ~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~~s~~~a~~~l~~~g~~fl~~-~ 92 (281)
.+-++|-||-|. ...|.+|.+.|++|- |++...+. ..+.|+++|+.+-...+ ++..++..=+.+=.+ +
T Consensus 9 ~iHfIGIgG~GM------sglA~iL~~~G~~Vs--GSD~~~~~--~t~~L~~~G~~i~~gh~-~~ni~~~~~VV~s~Ai~ 77 (459)
T COG0773 9 KIHFIGIGGIGM------SGLAEILLNLGYKVS--GSDLAESP--MTQRLEALGIEIFIGHD-AENILDADVVVVSNAIK 77 (459)
T ss_pred eEEEEeeccccH------HHHHHHHHhCCCceE--CccccccH--HHHHHHHCCCeEeCCCC-HHHcCCCceEEEecccC
Confidence 356667777665 367899999999997 77664444 88999999998654322 222222222222222 5
Q ss_pred ccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChh-hHHHHHHHHHHcCCCeEEEEec
Q 023546 93 KYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNEN-LVLKMANALQRFGLKRALVVHS 159 (281)
Q Consensus 93 ~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~-~~~~~~~~~~~lg~~~~lvv~G 159 (281)
.=+|.+ ....++.+.+-+=--.|+-|+.. +....|.|-==|. .-.+++.++...|.+-.+++-|
T Consensus 78 ~~NpEi--~~A~e~~ipi~~r~e~Laelm~~-~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~iGG 142 (459)
T COG0773 78 EDNPEI--VAALERGIPVISRAEMLAELMRF-RTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIGG 142 (459)
T ss_pred CCCHHH--HHHHHcCCCeEcHHHHHHHHHhC-CeeEEEeCCCCchhHHHHHHHHHHhCCCCCEEEECc
Confidence 666766 33444556666677788888887 5556666654444 3456677788888887777776
No 71
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=32.35 E-value=2e+02 Score=26.09 Aligned_cols=128 Identities=19% Similarity=0.096 Sum_probs=86.6
Q ss_pred CcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHH-cCCCCC-----CCHHHHHHHHHHcC-
Q 023546 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEA-LGVVID-----LDPEGVRRCVDEAG- 85 (281)
Q Consensus 13 ~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~-LGi~~~-----~s~~~a~~~l~~~g- 85 (281)
-.+|+-||=|+|...++=..-+---|.+.|.|++.--|.+..++.-...-|+. +|+++. .|-+-+.+.+.++.
T Consensus 11 ~l~DlDGvl~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~~i~TS~~at~~~l~~~~~ 90 (269)
T COG0647 11 FLFDLDGVLYRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPDDIVTSGDATADYLAKQKP 90 (269)
T ss_pred EEEcCcCceEeCCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHHHeecHHHHHHHHHHhhCC
Confidence 46899999999999877666666667799999999999886666645556666 566443 44556666777642
Q ss_pred --eEEEeCCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCC
Q 023546 86 --IGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGL 151 (281)
Q Consensus 86 --~~fl~~~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~ 151 (281)
=+|+--+ ..+.+.=+.+|+-...+ -||.++.+.++|.-...-.+++++++..+..
T Consensus 91 ~~kv~viG~------~~l~~~l~~~G~~~~~~-----~~~~~~d~Vv~g~d~~~~~e~l~~a~~~i~~ 147 (269)
T COG0647 91 GKKVYVIGE------EGLKEELEGAGFELVDE-----EEPARVDAVVVGLDRTLTYEKLAEALLAIAA 147 (269)
T ss_pred CCEEEEECC------cchHHHHHhCCcEEecc-----CCCCcccEEEEecCCCCCHHHHHHHHHHHHc
Confidence 5555542 22333334566533322 2444467889999888888899999988754
No 72
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=32.26 E-value=3.3e+02 Score=23.53 Aligned_cols=124 Identities=14% Similarity=0.110 Sum_probs=69.4
Q ss_pred cceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHHHHHHcCeEEEeCCc
Q 023546 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTK 93 (281)
Q Consensus 14 ~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~~s~~~a~~~l~~~g~~fl~~~~ 93 (281)
.+=|.|+.|.|+ ||.+-.++...|++++-.|.- .....-+...-|++.. +.+...+.+.+.++.|.....
T Consensus 4 ~i~i~G~~GsGK-----st~~~~la~~~~~~~~~~g~~----~r~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 73 (217)
T TIGR00017 4 IIAIDGPSGAGK-----STVAKAVAEKLGYAYLDSGAM----YRAIALAALQNRVDLT-SEDALAELISHLDIRFIPTNG 73 (217)
T ss_pred EEEEECCCCCCH-----HHHHHHHHHHhCCceeeCchH----HHHHHHHHHHcCCCCC-CHHHHHHHHHhCCCEEecCCC
Confidence 355678888888 678888888889887743321 0012223334477763 566777888899988865431
Q ss_pred c-ChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEecC
Q 023546 94 Y-HPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSE 160 (281)
Q Consensus 94 ~-~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~Ge 160 (281)
- .--+.. ..+-+++ | +|--.........||...+.+.+..+.+..+..+|+-|.
T Consensus 74 ~~~~~l~~-~~v~~~i--r----------~~~v~~~~s~~a~~p~VR~~l~~~qr~~a~~~~~Vi~Gr 128 (217)
T TIGR00017 74 EVEVFLNG-EDVSEAI--R----------TQEVANAASKVAVFPKVREALLKRQQALAKNDGIIADGR 128 (217)
T ss_pred ceeEEEcC-cchHHHh--c----------CHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCCEEEEEc
Confidence 0 000000 0111111 1 111111112246688888888888887765556888883
No 73
>PF14207 DpnD-PcfM: DpnD/PcfM-like protein
Probab=32.25 E-value=48 Score=21.95 Aligned_cols=19 Identities=11% Similarity=0.158 Sum_probs=16.8
Q ss_pred CCCHHHHHHHHHHHHHccH
Q 023546 242 VNTLAEGVALAREIQLSGK 260 (281)
Q Consensus 242 ~~~~~eg~~~A~~~l~sG~ 260 (281)
++|.++|++++++.|.++.
T Consensus 18 A~s~eeA~~~v~~~y~~~e 36 (48)
T PF14207_consen 18 AESEEEAIEKVRDAYRNEE 36 (48)
T ss_pred eCCHHHHHHHHHHHHhCCC
Confidence 5789999999999998875
No 74
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=32.15 E-value=94 Score=29.11 Aligned_cols=78 Identities=21% Similarity=0.228 Sum_probs=47.4
Q ss_pred CcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHH-----HHHHHcCCC----------------CC
Q 023546 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSA-----DVLEALGVV----------------ID 71 (281)
Q Consensus 13 ~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~-----dvLe~LGi~----------------~~ 71 (281)
..|-++|++|.|++|+= -.....+...|.+|..-..+..++..|-+ .-++.++-. .+
T Consensus 57 ~~igi~G~~GaGKSTl~--~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~a 134 (332)
T PRK09435 57 LRIGITGVPGVGKSTFI--EALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGVA 134 (332)
T ss_pred EEEEEECCCCCCHHHHH--HHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccchH
Confidence 46899999999997532 22233445669999988887766654422 234544321 11
Q ss_pred CCHHHHHHHHHHcCeEEEeCC
Q 023546 72 LDPEGVRRCVDEAGIGFMMST 92 (281)
Q Consensus 72 ~s~~~a~~~l~~~g~~fl~~~ 92 (281)
....++.+.++..|+-|+..+
T Consensus 135 ~~~~~~~~~~~~~g~d~viie 155 (332)
T PRK09435 135 RKTRETMLLCEAAGYDVILVE 155 (332)
T ss_pred HHHHHHHHHHhccCCCEEEEE
Confidence 224566667777777666654
No 75
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=32.04 E-value=2.5e+02 Score=27.21 Aligned_cols=83 Identities=12% Similarity=0.139 Sum_probs=52.1
Q ss_pred CCcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHH----HcCCCC--CCCHHHHHHHHHH--
Q 023546 12 GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLE----ALGVVI--DLDPEGVRRCVDE-- 83 (281)
Q Consensus 12 ~~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe----~LGi~~--~~s~~~a~~~l~~-- 83 (281)
...+=++|..|.|+.|.-.- .|..+...|.+|..--.+ +.+.|+.+-|. .+|+++ ..++++..+.++.
T Consensus 206 ~~ii~lvGptGvGKTTt~ak--LA~~l~~~g~~V~lItaD--tyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVK--LGWQLLKQNRTVGFITTD--TFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred CeEEEEECCCCCCHHHHHHH--HHHHHHHcCCeEEEEeCC--ccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 34567899999999641111 122234568888875543 44666544444 468775 4678887776663
Q ss_pred ----cCeEEEeCCccChhh
Q 023546 84 ----AGIGFMMSTKYHPAM 98 (281)
Q Consensus 84 ----~g~~fl~~~~~~P~l 98 (281)
.-+.+++.+-.+|..
T Consensus 282 ~~~~~D~VLIDTAGr~~~d 300 (407)
T PRK12726 282 YVNCVDHILIDTVGRNYLA 300 (407)
T ss_pred hcCCCCEEEEECCCCCccC
Confidence 467888888777644
No 76
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=32.02 E-value=74 Score=26.84 Aligned_cols=33 Identities=24% Similarity=0.302 Sum_probs=23.0
Q ss_pred CcceEec-CCCCCCCCccchHHHHHHHHcCCCcEEe
Q 023546 13 DAVDIVG-TGGDGANTVNISTGASILAAACGAKVAK 47 (281)
Q Consensus 13 ~~~Di~g-tggdG~~t~nis~~aa~vlA~~G~~V~~ 47 (281)
+.|=+++ .||.|+.| ++...|..+|+.|.+|+.
T Consensus 18 kvI~v~s~kgG~GKTt--~a~~LA~~la~~G~rVll 51 (204)
T TIGR01007 18 KVLLITSVKPGEGKST--TSANIAVAFAQAGYKTLL 51 (204)
T ss_pred cEEEEecCCCCCCHHH--HHHHHHHHHHhCCCeEEE
Confidence 4455554 46777765 455677778899999985
No 77
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=31.96 E-value=1.5e+02 Score=28.06 Aligned_cols=94 Identities=19% Similarity=0.277 Sum_probs=71.6
Q ss_pred HHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHH-HHHHHHHHcCeEEEeC-CccChhhhchHHHHhhhCCCCh
Q 023546 36 ILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPE-GVRRCVDEAGIGFMMS-TKYHPAMKFVRPVRKKLKVKTV 113 (281)
Q Consensus 36 ~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~~s~~-~a~~~l~~~g~~fl~~-~~~~P~l~~l~~lR~~lg~Rt~ 113 (281)
-++++|++-+..|=- .-..|..=+|-.+|+++-++.+ ..-+.|.+.|+.+++. +.+.... +...+++|..
T Consensus 261 ~lL~~cDl~if~~~R---QQgiGnI~lLl~~G~~v~L~~~np~~~~l~~~~ipVlf~~d~L~~~~--v~ea~rql~~--- 332 (360)
T PF07429_consen 261 ALLSRCDLGIFNHNR---QQGIGNICLLLQLGKKVFLSRDNPFWQDLKEQGIPVLFYGDELDEAL--VREAQRQLAN--- 332 (360)
T ss_pred HHHHhCCEEEEeech---hhhHhHHHHHHHcCCeEEEecCChHHHHHHhCCCeEEeccccCCHHH--HHHHHHHHhh---
Confidence 467889888887633 2246778888889999776544 6778889999988777 8888776 8888888764
Q ss_pred hhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHc
Q 023546 114 FNILGPMLNPACVPFAVVGVYNENLVLKMANALQRF 149 (281)
Q Consensus 114 ~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~l 149 (281)
...+-+.+|.|.|.+.-.+++...
T Consensus 333 ------------~dk~~iaFf~pny~~~w~~~l~~~ 356 (360)
T PF07429_consen 333 ------------VDKQQIAFFAPNYLQGWRQALRLA 356 (360)
T ss_pred ------------CcccceeeeCCchHHHHHHHHHHH
Confidence 344556899999999999888654
No 78
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=31.86 E-value=31 Score=28.43 Aligned_cols=28 Identities=36% Similarity=0.412 Sum_probs=21.1
Q ss_pred cCCCCCCCCccchHHHHHHHHcCCCcEEee
Q 023546 19 GTGGDGANTVNISTGASILAAACGAKVAKQ 48 (281)
Q Consensus 19 gtggdG~~t~nis~~aa~vlA~~G~~V~~H 48 (281)
+-||.|++| ++...|..+|..|.+|+.-
T Consensus 6 ~kGG~GKTt--~a~~la~~la~~g~~Vlli 33 (195)
T PF01656_consen 6 GKGGVGKTT--IAANLAQALARKGKKVLLI 33 (195)
T ss_dssp SSTTSSHHH--HHHHHHHHHHHTTS-EEEE
T ss_pred CCCCccHHH--HHHHHHhcccccccccccc
Confidence 458888876 5666888888899999963
No 79
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=31.41 E-value=4.7e+02 Score=24.96 Aligned_cols=89 Identities=22% Similarity=0.216 Sum_probs=55.5
Q ss_pred CcceEecCCCCCCCCccchHHHHHHHHc----CC-CcEEeeCCCCCCCcccHHHHHH----HcCCCCC--C---CHHHHH
Q 023546 13 DAVDIVGTGGDGANTVNISTGASILAAA----CG-AKVAKQGSRSSSSACGSADVLE----ALGVVID--L---DPEGVR 78 (281)
Q Consensus 13 ~~~Di~gtggdG~~t~nis~~aa~vlA~----~G-~~V~~HG~~~~~~~~gs~dvLe----~LGi~~~--~---s~~~a~ 78 (281)
..+=++|+.|.|+. |+++.+++. .| .+|..-..+. .+.|..+-|+ .+|+++. . +...+.
T Consensus 138 ~ii~lvGptGvGKT-----TtiakLA~~~~~~~G~~~V~lit~D~--~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l 210 (374)
T PRK14722 138 GVFALMGPTGVGKT-----TTTAKLAARCVMRFGASKVALLTTDS--YRIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL 210 (374)
T ss_pred cEEEEECCCCCCHH-----HHHHHHHHHHHHhcCCCeEEEEeccc--ccccHHHHHHHHHHHcCCceEecCCcccHHHHH
Confidence 45668999999984 444444443 35 4565544332 3556555554 6788763 2 334555
Q ss_pred HHHHHcCeEEEeCCccChhhhchHHHHhhh
Q 023546 79 RCVDEAGIGFMMSTKYHPAMKFVRPVRKKL 108 (281)
Q Consensus 79 ~~l~~~g~~fl~~~~~~P~l~~l~~lR~~l 108 (281)
..+.+..+.+++.+-+.|--..+....+.+
T Consensus 211 ~~l~~~DlVLIDTaG~~~~d~~l~e~La~L 240 (374)
T PRK14722 211 AELRNKHMVLIDTIGMSQRDRTVSDQIAML 240 (374)
T ss_pred HHhcCCCEEEEcCCCCCcccHHHHHHHHHH
Confidence 556678899999999888666665555544
No 80
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=31.09 E-value=1.8e+02 Score=24.81 Aligned_cols=131 Identities=21% Similarity=0.333 Sum_probs=71.8
Q ss_pred cceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHH----HHHcCCCCC-----CCHHH-HHHHHH-
Q 023546 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADV----LEALGVVID-----LDPEG-VRRCVD- 82 (281)
Q Consensus 14 ~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dv----Le~LGi~~~-----~s~~~-a~~~l~- 82 (281)
++=++|+.|.|+.| -+.=+++..... |.+|.+...+ +.|.|..+- -+.+|+|+. .++.+ +.+.++
T Consensus 3 vi~lvGptGvGKTT-t~aKLAa~~~~~-~~~v~lis~D--~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 3 VIALVGPTGVGKTT-TIAKLAARLKLK-GKKVALISAD--TYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp EEEEEESTTSSHHH-HHHHHHHHHHHT-T--EEEEEES--TSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCchHh-HHHHHHHHHhhc-cccceeecCC--CCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 34579999999953 112223333333 8888877643 467775444 466688742 23433 334444
Q ss_pred --H--cCeEEEeCCccChhhhc-hHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEE
Q 023546 83 --E--AGIGFMMSTKYHPAMKF-VRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVV 157 (281)
Q Consensus 83 --~--~g~~fl~~~~~~P~l~~-l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv 157 (281)
+ ..+.+++.+-.+|.... +..+++ +.+.+ +|...-..+-.-.+..-.+...+..+..+.+..++-
T Consensus 79 ~~~~~~D~vlIDT~Gr~~~d~~~~~el~~------~~~~~----~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlT 148 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAGRSPRDEELLEELKK------LLEAL----NPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILT 148 (196)
T ss_dssp HHHTTSSEEEEEE-SSSSTHHHHHHHHHH------HHHHH----SSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEE
T ss_pred HhhcCCCEEEEecCCcchhhHHHHHHHHH------Hhhhc----CCccceEEEecccChHHHHHHHHHhhcccCceEEEE
Confidence 3 45899999988886544 334443 22222 444333334444455555566666677788766666
Q ss_pred e
Q 023546 158 H 158 (281)
Q Consensus 158 ~ 158 (281)
|
T Consensus 149 K 149 (196)
T PF00448_consen 149 K 149 (196)
T ss_dssp S
T ss_pred e
Confidence 6
No 81
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=30.89 E-value=29 Score=31.63 Aligned_cols=36 Identities=33% Similarity=0.474 Sum_probs=27.1
Q ss_pred ceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCC
Q 023546 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRS 52 (281)
Q Consensus 15 ~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~ 52 (281)
|=+.|-||=|++| ++.=.+..+|..|.+|+.+|-+.
T Consensus 3 IAiYGKGGIGKST--~~~Nlsaala~~G~kVl~iGCDP 38 (273)
T PF00142_consen 3 IAIYGKGGIGKST--TASNLSAALAEMGKKVLQIGCDP 38 (273)
T ss_dssp EEEEESTTSSHHH--HHHHHHHHHHHTT--EEEEEESS
T ss_pred EEEEcCCCcccCh--hhhHHHHHHHhccceeeEecccC
Confidence 4578999999985 45556777899999999999765
No 82
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=30.59 E-value=1.4e+02 Score=22.17 Aligned_cols=42 Identities=21% Similarity=0.078 Sum_probs=19.4
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHHH------ccHHHHHHHHHHHHhC
Q 023546 229 ILNAAAALLVSCKVNTLAEGVALAREIQL------SGKALNTLDLWIEVSK 273 (281)
Q Consensus 229 ~~naa~~L~~~G~~~~~~eg~~~A~~~l~------sG~a~~~l~~~~~~~~ 273 (281)
.+..|..+...| +.++|++.-.++++ .|.|.+.+-++.+..+
T Consensus 25 r~~lA~~~~~~g---~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 25 RYALADALLAAG---DYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLG 72 (90)
T ss_dssp HHHHHHHHHHTT----HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence 334444455444 24555555555443 3455555555444433
No 83
>PF04227 Indigoidine_A: Indigoidine synthase A like protein; InterPro: IPR007342 Members of this entry catalyze the hydrolysis of pseudouridine 5'-phosphate (PsiMP) to ribose 5-phosphate and uracil. It is also reported to be involved in the synthesis of indigoidine, which is a blue pigment synthesised by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 1VKM_C.
Probab=30.50 E-value=98 Score=28.52 Aligned_cols=116 Identities=24% Similarity=0.277 Sum_probs=58.4
Q ss_pred ecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcc-----c-HHHHHHHc---------CCCCCCCHHHHHHHHH
Q 023546 18 VGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSAC-----G-SADVLEAL---------GVVIDLDPEGVRRCVD 82 (281)
Q Consensus 18 ~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~-----g-s~dvLe~L---------Gi~~~~s~~~a~~~l~ 82 (281)
+..|.+|..| -.+.++++..+|++|+-.|+=+-=++. - |+|+-|-= |++.=++....-+.|+
T Consensus 89 ~a~~~~GaTT---VsaTm~lA~~aGI~VfaTGGiGGVHrga~~t~DiSaDL~eL~rtpv~VV~aG~KsILDi~~TLE~LE 165 (293)
T PF04227_consen 89 LAKGLSGATT---VSATMILAHLAGIKVFATGGIGGVHRGAEETFDISADLTELARTPVAVVCAGAKSILDIPKTLEYLE 165 (293)
T ss_dssp HHHT--EEE----HHHHHHHHHHTT--EEE-S-B--B-TT---SS-B-HHHHHHTTS-EEEEESBB-TTS-HHHHHHHHH
T ss_pred HhCCCccHhH---HHHHHHHHHHcCCCEEEeCCcccCCCCCcCcchhhhHHHHHhcCCceEEEccCcchhchHHHHHHhh
Confidence 3446666654 345667778889999998885522222 1 77876632 4555578889999999
Q ss_pred HcCeEEEe-CCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEe
Q 023546 83 EAGIGFMM-STKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH 158 (281)
Q Consensus 83 ~~g~~fl~-~~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~ 158 (281)
.+|+..+. ..+.+|+++. +.-|++.. + -+.+++-...+..+-..+|....++|-
T Consensus 166 T~GV~Vvgy~t~~fPaFy~-----~~Sg~~~~--------------~---~~d~~~e~A~~~~~~~~lgl~~g~lva 220 (293)
T PF04227_consen 166 TQGVPVVGYGTDEFPAFYT-----RSSGFKSP--------------Y---RVDSPEEAARIIRAHWQLGLPSGVLVA 220 (293)
T ss_dssp HTT--EEEES-SB--BTTB-----S--S-B--------------------EE-SHHHHHHHHHHHHHTT--SEEEEE
T ss_pred cCCeEEEEecCCCCCeeec-----cCCCCCCC--------------c---ccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 99998774 4678888753 12222221 1 345555566666666778887777655
No 84
>PRK04531 acetylglutamate kinase; Provisional
Probab=30.39 E-value=1.8e+02 Score=28.03 Aligned_cols=98 Identities=11% Similarity=0.180 Sum_probs=53.2
Q ss_pred HHcCCC-cEEeeCCCCCCCcccHHHHHHHcCCCCC------CCHHHHHHH----HHHcCeEEEeCCccChhhhchHH-HH
Q 023546 38 AAACGA-KVAKQGSRSSSSACGSADVLEALGVVID------LDPEGVRRC----VDEAGIGFMMSTKYHPAMKFVRP-VR 105 (281)
Q Consensus 38 lA~~G~-~V~~HG~~~~~~~~gs~dvLe~LGi~~~------~s~~~a~~~----l~~~g~~fl~~~~~~P~l~~l~~-lR 105 (281)
+.+.|+ +|+.||++. -....|+.+|++.. .+.+++.+. +.+.+. .|.. +|
T Consensus 62 L~~~G~~~VlVHGggp-----qI~~~l~~~gie~~~v~G~RVTd~~tl~vv~~~l~~vn~-------------~lv~~I~ 123 (398)
T PRK04531 62 LQEVGLTPIVVHGAGP-----QLDAELDAAGIEKETVNGLRVTSPEALAIVRKVFQRSNL-------------DLVEAVE 123 (398)
T ss_pred HHHCCCcEEEEECCCH-----HHHHHHHHcCCCcEEECCEecCCHHHHHHHHHHHHHHHH-------------HHHHHHH
Confidence 456676 788999854 24588888887542 122222222 222211 1111 44
Q ss_pred hhhCCCChhhhhhhccCCCC--CCceEEeeeChhhHHHHHHHHHHcCCCeEEEEec-CC
Q 023546 106 KKLKVKTVFNILGPMLNPAC--VPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EG 161 (281)
Q Consensus 106 ~~lg~Rt~~ntl~~LlNP~~--~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~G-eG 161 (281)
+.|.-.-+ |++.|.. +.-++ |.=.-.+...+++..++.++.+.+.. +|
T Consensus 124 ~~L~~g~I-----PVlsplg~~~~G~~---~NvnaD~vA~~LA~aL~a~KLIfltdv~G 174 (398)
T PRK04531 124 SSLRAGSI-----PVIASLGETPSGQI---LNINADVAANELVSALQPYKIIFLTGTGG 174 (398)
T ss_pred HHHHCCCE-----EEEeCcEECCCCcE---EEECHHHHHHHHHHHcCCCEEEEEECCCC
Confidence 44433222 7777764 22222 23344566777888898877877776 56
No 85
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=30.15 E-value=37 Score=30.30 Aligned_cols=32 Identities=34% Similarity=0.383 Sum_probs=24.7
Q ss_pred ceEecCCCCCCCCccchHHHHHHHHcCCCcEEee
Q 023546 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQ 48 (281)
Q Consensus 15 ~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~H 48 (281)
|=++|=||.|+.| .+.-.|..||+.|.+|+.-
T Consensus 4 iav~~KGGVGKTT--~~~nLA~~La~~G~rVLlI 35 (274)
T PRK13235 4 VAIYGKGGIGKST--TTQNTVAGLAEMGKKVMVV 35 (274)
T ss_pred EEEeCCCCccHHH--HHHHHHHHHHHCCCcEEEE
Confidence 4456789999985 3555777889999999875
No 86
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=30.12 E-value=61 Score=29.69 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=24.2
Q ss_pred CCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCC
Q 023546 21 GGDGANTVNISTGASILAAACGAKVAKQGSRSSS 54 (281)
Q Consensus 21 ggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~ 54 (281)
-|.|...+++-.+-.+ -+..++|.++||+.+.+
T Consensus 182 ~y~~~p~Ld~~~L~~i-~~~~~vPLVlHGgSG~~ 214 (284)
T PRK12857 182 PYKGEPKLDFDRLAKI-KELVNIPIVLHGSSGVP 214 (284)
T ss_pred ccCCCCcCCHHHHHHH-HHHhCCCEEEeCCCCCC
Confidence 6766557777776666 45568999999997654
No 87
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=30.12 E-value=47 Score=27.86 Aligned_cols=31 Identities=32% Similarity=0.361 Sum_probs=24.0
Q ss_pred ceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCC
Q 023546 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQGS 50 (281)
Q Consensus 15 ~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~ 50 (281)
|=|+||||.|+ ||++..++...|++-.--|.
T Consensus 10 ILvtGTPG~GK-----stl~~~lae~~~~~~i~isd 40 (176)
T KOG3347|consen 10 ILVTGTPGTGK-----STLAERLAEKTGLEYIEISD 40 (176)
T ss_pred EEEeCCCCCCc-----hhHHHHHHHHhCCceEehhh
Confidence 33899999999 67888888888888765443
No 88
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=29.86 E-value=64 Score=29.05 Aligned_cols=61 Identities=36% Similarity=0.441 Sum_probs=38.9
Q ss_pred ceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCC-CCC-c--cc------HHHHHHHcCCCCCCCHHHH
Q 023546 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRS-SSS-A--CG------SADVLEALGVVIDLDPEGV 77 (281)
Q Consensus 15 ~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~-~~~-~--~g------s~dvLe~LGi~~~~s~~~a 77 (281)
+-+.|-||=|++| +|.=.+-.+|..|.+|+.||=+. ..| + .| .-|.|...|--.+..++++
T Consensus 4 iAiYGKGGIGKST--ts~N~aAAla~~GkkVl~vGCDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~ledv 74 (278)
T COG1348 4 IAIYGKGGIGKST--TSQNLAAALAELGKKVLIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLELEDV 74 (278)
T ss_pred EEEecCCCcCcch--hHHHHHHHHHHcCCeEEEEcCCCCcchHHHHhCCcccchHHHHHHhcCccccCCHHHh
Confidence 5578999999985 23334455678899999999755 222 2 12 4677777664333444443
No 89
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=29.60 E-value=37 Score=30.09 Aligned_cols=30 Identities=33% Similarity=0.479 Sum_probs=22.6
Q ss_pred EecCCCCCCCCccchHHHHHHHHcCCCcEEee
Q 023546 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQ 48 (281)
Q Consensus 17 i~gtggdG~~t~nis~~aa~vlA~~G~~V~~H 48 (281)
+.|=||.|+.| ++.-.|..+|..|.+|+.-
T Consensus 5 ~~gKGGVGKTT--~~~nLA~~La~~g~rVLli 34 (268)
T TIGR01281 5 VYGKGGIGKST--TSSNLSVAFAKLGKRVLQI 34 (268)
T ss_pred EEcCCcCcHHH--HHHHHHHHHHhCCCeEEEE
Confidence 56889999986 3444666778999999853
No 90
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=29.56 E-value=35 Score=26.10 Aligned_cols=90 Identities=13% Similarity=0.120 Sum_probs=47.4
Q ss_pred CCCCCCCHHHHHHHHHHcCeEEEeCCccC--hhhhchHHHHhhhC--CCChhhhhhhccCCCCCCceEEeeeChhhHHHH
Q 023546 67 GVVIDLDPEGVRRCVDEAGIGFMMSTKYH--PAMKFVRPVRKKLK--VKTVFNILGPMLNPACVPFAVVGVYNENLVLKM 142 (281)
Q Consensus 67 Gi~~~~s~~~a~~~l~~~g~~fl~~~~~~--P~l~~l~~lR~~lg--~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~ 142 (281)
|.+-+.+-.+|.+.|+++|+.|-+....- |.-..|..+=+.+| ++.++|+=++...-.. ....-.....++.+.|
T Consensus 2 ~~~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l~~~~~~~~~lin~~~~~~k~l~-~~~~~~~s~~e~i~~l 80 (110)
T PF03960_consen 2 GNPNCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELLSKLGNGPDDLINTRSKTYKELG-KLKKDDLSDEELIELL 80 (110)
T ss_dssp E-TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHHHHHTSSGGGGB-TTSHHHHHTT-HHHCTTSBHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHHHHhcccHHHHhcCccchHhhhh-hhhhhhhhhHHHHHHH
Confidence 45666777899999999999888775443 77778888888888 5555555443322222 1111223444444444
Q ss_pred HHHHHHcCCCeEEEEec
Q 023546 143 ANALQRFGLKRALVVHS 159 (281)
Q Consensus 143 ~~~~~~lg~~~~lvv~G 159 (281)
.+=-..+. |=+|+.|
T Consensus 81 ~~~p~Lik--RPIi~~~ 95 (110)
T PF03960_consen 81 LENPKLIK--RPIIVDG 95 (110)
T ss_dssp HHSGGGB---SSEEEET
T ss_pred HhChhhee--CCEEEEC
Confidence 44333432 3355554
No 91
>PLN02540 methylenetetrahydrofolate reductase
Probab=29.49 E-value=1.1e+02 Score=31.04 Aligned_cols=71 Identities=10% Similarity=0.099 Sum_probs=46.6
Q ss_pred HHHHHHHcCeEEEeCCcc------ChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcC
Q 023546 77 VRRCVDEAGIGFMMSTKY------HPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFG 150 (281)
Q Consensus 77 a~~~l~~~g~~fl~~~~~------~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg 150 (281)
..+.|.+.+-.|+...-- .-.+.-...+++++|+.++.|+..+=.|. .-.+...+-+..+|
T Consensus 20 ~~~rl~~~~P~FisVT~gAgGst~~~Tl~la~~lq~~~Gie~i~HLTCrd~n~-------------~~L~~~L~~a~~~G 86 (565)
T PLN02540 20 RMDRMVAHGPLFCDITWGAGGSTADLTLDIANRMQNMICVETMMHLTCTNMPV-------------EKIDHALETIKSNG 86 (565)
T ss_pred HHHHHhccCCCEEEeCCCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCH-------------HHHHHHHHHHHHCC
Confidence 345556777778765322 23455556678889999998885543332 23444445557899
Q ss_pred CCeEEEEecC
Q 023546 151 LKRALVVHSE 160 (281)
Q Consensus 151 ~~~~lvv~Ge 160 (281)
.++.++++||
T Consensus 87 IrNILALrGD 96 (565)
T PLN02540 87 IQNILALRGD 96 (565)
T ss_pred CCEEEEECCC
Confidence 9999999994
No 92
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=29.46 E-value=2.9e+02 Score=24.97 Aligned_cols=67 Identities=27% Similarity=0.395 Sum_probs=37.0
Q ss_pred CcceEecCCCCCCCCccchHHHHHHHHcC-C-CcEEeeCCCCCCCcccHHHHH----HHcCCCC--CCCHHHHHHHHHH
Q 023546 13 DAVDIVGTGGDGANTVNISTGASILAAAC-G-AKVAKQGSRSSSSACGSADVL----EALGVVI--DLDPEGVRRCVDE 83 (281)
Q Consensus 13 ~~~Di~gtggdG~~t~nis~~aa~vlA~~-G-~~V~~HG~~~~~~~~gs~dvL----e~LGi~~--~~s~~~a~~~l~~ 83 (281)
..+=++|.+|.|+.|.-.. .|..++.. | .+|..--.+ +.+.+..+-| +.+|+++ ..++++..+.+++
T Consensus 195 ~vi~~vGptGvGKTTt~~k--La~~~~~~~g~~~V~li~~D--~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~ 269 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAK--LAARFVLEHGNKKVALITTD--TYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDR 269 (282)
T ss_pred eEEEEECCCCCCHHHHHHH--HHHHHHHHcCCCeEEEEECC--ccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHH
Confidence 3677999999999631111 11122222 4 777766544 2344543333 4467775 3556666666664
No 93
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=29.36 E-value=1.5e+02 Score=26.14 Aligned_cols=91 Identities=18% Similarity=0.272 Sum_probs=53.7
Q ss_pred cCCCCCCCHHHHHHHHHHcCeEEEeCC--ccChhhh-ch------HHHHhhhCCCChhhhhhhccCCCCCCceEEeeeCh
Q 023546 66 LGVVIDLDPEGVRRCVDEAGIGFMMST--KYHPAMK-FV------RPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNE 136 (281)
Q Consensus 66 LGi~~~~s~~~a~~~l~~~g~~fl~~~--~~~P~l~-~l------~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~ 136 (281)
+|+|-..++.+..+.+++.|.-++... .--|-++ .. ..++.-..++..+..+..+-+-...+..++++++|
T Consensus 8 ~G~P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~ 87 (242)
T cd04724 8 AGDPDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNP 87 (242)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCH
Confidence 466655566777788888888777663 3223222 11 12222223334566666655434455678888887
Q ss_pred hhH---HHHHHHHHHcCCCeEEEE
Q 023546 137 NLV---LKMANALQRFGLKRALVV 157 (281)
Q Consensus 137 ~~~---~~~~~~~~~lg~~~~lvv 157 (281)
-|. +.+.+.+...|.+ .+++
T Consensus 88 ~~~~G~~~fi~~~~~aG~~-giii 110 (242)
T cd04724 88 ILQYGLERFLRDAKEAGVD-GLII 110 (242)
T ss_pred HHHhCHHHHHHHHHHCCCc-EEEE
Confidence 444 6677778888884 5555
No 94
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=29.16 E-value=1.1e+02 Score=29.01 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=25.3
Q ss_pred EecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCc
Q 023546 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSA 56 (281)
Q Consensus 17 i~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~ 56 (281)
+.|||| -+|.+..+....+|+||+.|=.....++
T Consensus 95 vig~Gg------yvs~P~~~Aa~~~~iPv~ihEqn~~~G~ 128 (357)
T COG0707 95 VIGTGG------YVSGPVGIAAKLLGIPVIIHEQNAVPGL 128 (357)
T ss_pred EEecCC------ccccHHHHHHHhCCCCEEEEecCCCcch
Confidence 467665 2566777777788999999988776654
No 95
>PRK07261 topology modulation protein; Provisional
Probab=29.11 E-value=60 Score=26.91 Aligned_cols=30 Identities=30% Similarity=0.378 Sum_probs=23.4
Q ss_pred ceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeC
Q 023546 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQG 49 (281)
Q Consensus 15 ~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG 49 (281)
|=|+|++|.|+ ||++..+....|++++..+
T Consensus 3 i~i~G~~GsGK-----STla~~l~~~~~~~~i~~D 32 (171)
T PRK07261 3 IAIIGYSGSGK-----STLARKLSQHYNCPVLHLD 32 (171)
T ss_pred EEEEcCCCCCH-----HHHHHHHHHHhCCCeEecC
Confidence 34799999999 7788888778888876543
No 96
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=28.68 E-value=38 Score=25.95 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=39.2
Q ss_pred CCCCCCCHHHHHHHHHHcCeEEEeCC--ccChhhhchHHHHhhhCCCChhhhhhh
Q 023546 67 GVVIDLDPEGVRRCVDEAGIGFMMST--KYHPAMKFVRPVRKKLKVKTVFNILGP 119 (281)
Q Consensus 67 Gi~~~~s~~~a~~~l~~~g~~fl~~~--~~~P~l~~l~~lR~~lg~Rt~~ntl~~ 119 (281)
+.|-+.+-..|.+.|+++|+.|-... .-.|.-..|..+-+.+|++.++|+=++
T Consensus 5 ~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~~~g~~~li~~~~~ 59 (105)
T cd03035 5 GIKNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLAKVGWETLLNKRGT 59 (105)
T ss_pred eCCCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHHHhChHHHHccCch
Confidence 45666667789999999988777664 446777778888788887777776443
No 97
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=28.58 E-value=36 Score=30.28 Aligned_cols=42 Identities=31% Similarity=0.389 Sum_probs=30.4
Q ss_pred EecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHH
Q 023546 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVL 63 (281)
Q Consensus 17 i~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvL 63 (281)
+.|.||.|+.| ++...|..+|+.|.+|+.-..+. +....|+|
T Consensus 5 ~~gkgG~GKtt--~a~~la~~~a~~g~~vLlvd~D~---~~sl~~~~ 46 (254)
T cd00550 5 FGGKGGVGKTT--ISAATAVRLAEQGKKVLLVSTDP---AHSLSDSF 46 (254)
T ss_pred EECCCCchHHH--HHHHHHHHHHHCCCCceEEeCCC---cccHHHHh
Confidence 56889999986 47777888899999999765543 22445554
No 98
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=28.37 E-value=79 Score=32.73 Aligned_cols=71 Identities=10% Similarity=-0.024 Sum_probs=54.3
Q ss_pred CChHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhCCCCCC
Q 023546 204 GGPAYNAEVLRRVLSGERGAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKGAPAF 278 (281)
Q Consensus 204 ~~~~~~~~~~~~vl~G~~~~~~~~v~~naa~~L~~~G~~~~~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~~~~~ 278 (281)
+.-++..+.+++++.. . +-..-+.++-|.+|...|+.++-..+++.|-+....|. +|+.++...-+++++|
T Consensus 168 g~~~~A~~~y~~~~~~-~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~ 238 (694)
T PRK15179 168 GQSEQADACFERLSRQ-H-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA--RKLTRRLVDLNADLAA 238 (694)
T ss_pred cchHHHHHHHHHHHhc-C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch--HHHHHHHHHHHHHHHH
Confidence 3567777888888872 2 22235678899999999998888888889999888887 8888887777766654
No 99
>PRK08118 topology modulation protein; Reviewed
Probab=28.31 E-value=51 Score=27.31 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=21.2
Q ss_pred ceEecCCCCCCCCccchHHHHHHHHcCCCcEE
Q 023546 15 VDIVGTGGDGANTVNISTGASILAAACGAKVA 46 (281)
Q Consensus 15 ~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~ 46 (281)
|=|+|++|.|+ ||++-.+....|+++.
T Consensus 4 I~I~G~~GsGK-----STlak~L~~~l~~~~~ 30 (167)
T PRK08118 4 IILIGSGGSGK-----STLARQLGEKLNIPVH 30 (167)
T ss_pred EEEECCCCCCH-----HHHHHHHHHHhCCCce
Confidence 34789899888 6788888888888866
No 100
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=28.16 E-value=44 Score=27.10 Aligned_cols=30 Identities=30% Similarity=0.348 Sum_probs=23.0
Q ss_pred ecCCCCCCCCccchHHHHHHHHcCCCcEEeeC
Q 023546 18 VGTGGDGANTVNISTGASILAAACGAKVAKQG 49 (281)
Q Consensus 18 ~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG 49 (281)
.+.||.|+.| ++...|..+++.|.+|+.--
T Consensus 6 ~~kgG~GKtt--~a~~la~~l~~~g~~vllvD 35 (179)
T cd02036 6 SGKGGVGKTT--TTANLGTALAQLGYKVVLID 35 (179)
T ss_pred eCCCCCCHHH--HHHHHHHHHHhCCCeEEEEe
Confidence 3568999986 46667778889999998653
No 101
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=27.88 E-value=49 Score=28.42 Aligned_cols=32 Identities=19% Similarity=0.181 Sum_probs=25.0
Q ss_pred cceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCC
Q 023546 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGS 50 (281)
Q Consensus 14 ~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~ 50 (281)
.+=++|++|.|+ ||.+..++...|++++..|.
T Consensus 5 ~i~i~G~~G~GK-----st~a~~l~~~~~~~~~~~~D 36 (197)
T PRK12339 5 IHFIGGIPGVGK-----TSISGYIARHRAIDIVLSGD 36 (197)
T ss_pred EEEEECCCCCCH-----HHHHHHHHHhcCCeEEehhH
Confidence 455889999999 77888888888887765554
No 102
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=27.43 E-value=61 Score=27.45 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=18.9
Q ss_pred ceEecCCCCCCCCccchHHHHHHHHcCCCcEE
Q 023546 15 VDIVGTGGDGANTVNISTGASILAAACGAKVA 46 (281)
Q Consensus 15 ~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~ 46 (281)
|.++|.||-| ...|.++|..|++|.
T Consensus 3 I~ViGlGyvG-------l~~A~~lA~~G~~V~ 27 (185)
T PF03721_consen 3 IAVIGLGYVG-------LPLAAALAEKGHQVI 27 (185)
T ss_dssp EEEE--STTH-------HHHHHHHHHTTSEEE
T ss_pred EEEECCCcch-------HHHHHHHHhCCCEEE
Confidence 5688999955 467888999999998
No 103
>PLN02645 phosphoglycolate phosphatase
Probab=27.41 E-value=97 Score=28.36 Aligned_cols=72 Identities=14% Similarity=0.105 Sum_probs=48.2
Q ss_pred cceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCC-----CHHHHHHHHHHcC
Q 023546 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDL-----DPEGVRRCVDEAG 85 (281)
Q Consensus 14 ~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~~-----s~~~a~~~l~~~g 85 (281)
.+|+-||=++|...++=..-+--.+-..|++++.=-|++..+..-..+-|+.+|+++.. +...+...|++.+
T Consensus 32 ~~D~DGtl~~~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~~I~ts~~~~~~~l~~~~ 108 (311)
T PLN02645 32 IFDCDGVIWKGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEEEIFSSSFAAAAYLKSIN 108 (311)
T ss_pred EEeCcCCeEeCCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCChhhEeehHHHHHHHHHhhc
Confidence 57999998888775543433344567789999988887755555556777999987542 2244555666543
No 104
>PTZ00413 lipoate synthase; Provisional
Probab=27.40 E-value=3.7e+02 Score=25.96 Aligned_cols=113 Identities=12% Similarity=0.040 Sum_probs=73.2
Q ss_pred HHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHHHHH---Hc---Ce----EEE-eC-CccChhhhc
Q 023546 33 GASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVD---EA---GI----GFM-MS-TKYHPAMKF 100 (281)
Q Consensus 33 ~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~~s~~~a~~~l~---~~---g~----~fl-~~-~~~~P~l~~ 100 (281)
-+.-.+..+|+-|.-|.-..+.. ++...- +...++++..+.|+ +. |+ ++| .+ +..---+.-
T Consensus 243 e~l~~L~eAG~dvynHNLETv~r------Lyp~VR-t~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET~eEvie~ 315 (398)
T PTZ00413 243 KSVEKLANSPLSVYAHNIECVER------ITPYVR-DRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGETEEEVRQT 315 (398)
T ss_pred HHHHHHHhcCCCEEecccccCHh------HHHHHc-cCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCCCHHHHHHH
Confidence 46777888999999998655321 111111 00123333333332 11 32 233 22 666666666
Q ss_pred hHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEE
Q 023546 101 VRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRAL 155 (281)
Q Consensus 101 l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~l 155 (281)
+..|| ++|+ -+-+++-.|.|....+-|.=++||+-.+.+.+.+..+|+..+.
T Consensus 316 m~dLr-elGV--DivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~v~ 367 (398)
T PTZ00413 316 LRDLR-TAGV--SAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYCA 367 (398)
T ss_pred HHHHH-HcCC--cEEeeccccCCCcccCCceeccCHHHHHHHHHHHHHcCCceEE
Confidence 66675 5777 4457888899999899999999999999999999999997543
No 105
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=26.93 E-value=53 Score=30.67 Aligned_cols=45 Identities=29% Similarity=0.404 Sum_probs=31.3
Q ss_pred eEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHH
Q 023546 16 DIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEA 65 (281)
Q Consensus 16 Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~ 65 (281)
=++|=||.|+.| ++-+.|..+|+.|.+|+.-..+ +..+..|++..
T Consensus 6 ~f~GKGGVGKTT--~aaA~A~~lA~~g~kvLlvStD---PAhsL~d~f~~ 50 (322)
T COG0003 6 FFTGKGGVGKTT--IAAATAVKLAESGKKVLLVSTD---PAHSLGDVFDL 50 (322)
T ss_pred EEecCCcccHHH--HHHHHHHHHHHcCCcEEEEEeC---CCCchHhhhcc
Confidence 368999999986 5666778999999877654432 34445555554
No 106
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=26.76 E-value=2.8e+02 Score=20.84 Aligned_cols=75 Identities=19% Similarity=0.212 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHcCeEEEeCCc-cChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHH-cC
Q 023546 73 DPEGVRRCVDEAGIGFMMSTK-YHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQR-FG 150 (281)
Q Consensus 73 s~~~a~~~l~~~g~~fl~~~~-~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~-lg 150 (281)
+.++..+.+.+.+.-.+.... +.+.+.....+-+.+ +-.+| ....++|=.|+...+ .++++. .|
T Consensus 39 ~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~----------k~~~p--~~~iv~GG~~~t~~~--~~~l~~~~~ 104 (121)
T PF02310_consen 39 PPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAI----------KERNP--NIPIVVGGPHATADP--EEILREYPG 104 (121)
T ss_dssp -HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHH----------HTTCT--TSEEEEEESSSGHHH--HHHHHHHHT
T ss_pred CHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHH----------HhcCC--CCEEEEECCchhcCh--HHHhccCcC
Confidence 347787878777666666655 677666666665542 22233 235566666765544 334444 66
Q ss_pred CCeEEEEecCCcc
Q 023546 151 LKRALVVHSEGLD 163 (281)
Q Consensus 151 ~~~~lvv~GeG~d 163 (281)
.+ .++.|||.+
T Consensus 105 ~D--~vv~GegE~ 115 (121)
T PF02310_consen 105 ID--YVVRGEGEE 115 (121)
T ss_dssp SE--EEEEETTSS
T ss_pred cc--eecCCChHH
Confidence 53 667788843
No 107
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=26.07 E-value=3.4e+02 Score=25.38 Aligned_cols=89 Identities=24% Similarity=0.341 Sum_probs=62.1
Q ss_pred cEEeeCCCCCCC--ccc--HHHHHHHc---CCCCCCCHHHHHHHHHHcCeEEEeCCccChhhhchHHHHhhhCCCChhhh
Q 023546 44 KVAKQGSRSSSS--ACG--SADVLEAL---GVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNI 116 (281)
Q Consensus 44 ~V~~HG~~~~~~--~~g--s~dvLe~L---Gi~~~~s~~~a~~~l~~~g~~fl~~~~~~P~l~~l~~lR~~lg~Rt~~nt 116 (281)
+.-.||....++ |.| ++|+.++| |=-++.+.++.++.|.+. .+..+|++.|-=|+..+
T Consensus 186 ~an~HgT~Dppp~~rvgfs~~Dld~aL~~~~E~lDIdrddLe~llr~~---------------elqa~~R~~~~LtcadI 250 (382)
T COG3448 186 PANLHGTADPPPSQRVGFSSEDLDAALQRLGETLDIDRDDLERLLRET---------------ELQALRRRMGELTCADI 250 (382)
T ss_pred cccccCCCCCCchhccCCCHHHHHHHHHhcCceecCCHHHHHHHHHHH---------------HHHHHHHHhccccHHHh
Confidence 345799888765 455 67776655 767888999999999875 45677888877666655
Q ss_pred hhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEE
Q 023546 117 LGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALV 156 (281)
Q Consensus 117 l~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lv 156 (281)
+. .-|+++.-....+.-.+.++.-+.+..=|
T Consensus 251 MS---------rdVvtv~~~ts~dhA~~ll~~H~ikaLPV 281 (382)
T COG3448 251 MS---------RDVVTVSTDTSIDHARKLLQEHRIKALPV 281 (382)
T ss_pred cC---------ccceecCCcCChHHHHHHHHHcCcccccc
Confidence 32 35777777777777777777777743334
No 108
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=25.99 E-value=75 Score=29.10 Aligned_cols=33 Identities=9% Similarity=0.067 Sum_probs=23.8
Q ss_pred CCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCC
Q 023546 21 GGDGANTVNISTGASILAAACGAKVAKQGSRSSS 54 (281)
Q Consensus 21 ggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~ 54 (281)
-|.+...+++-.+..+ -...++|.++||+.+.+
T Consensus 182 ~y~~~p~Ld~~~L~~I-~~~~~vPLVLHGgSG~~ 214 (284)
T PRK09195 182 MYKGEPKLDFDRLENI-RQWVNIPLVLHGASGLP 214 (284)
T ss_pred ccCCCCcCCHHHHHHH-HHHhCCCeEEecCCCCC
Confidence 5666556777776665 45569999999997654
No 109
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=25.94 E-value=47 Score=25.87 Aligned_cols=53 Identities=17% Similarity=0.100 Sum_probs=39.4
Q ss_pred CCCCCCCHHHHHHHHHHcCeEEEeCC--ccChhhhchHHHHhhhCCCChhhhhhh
Q 023546 67 GVVIDLDPEGVRRCVDEAGIGFMMST--KYHPAMKFVRPVRKKLKVKTVFNILGP 119 (281)
Q Consensus 67 Gi~~~~s~~~a~~~l~~~g~~fl~~~--~~~P~l~~l~~lR~~lg~Rt~~ntl~~ 119 (281)
|.|-+.+-..|.+.|+++|+.|-... .--|....|..+-+.+|++.++|+-+.
T Consensus 6 ~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l~~~g~~~l~n~~~~ 60 (113)
T cd03033 6 EKPGCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFFGDLPVAEWFNPAAP 60 (113)
T ss_pred ECCCCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHHHHcCHHHHHhcccH
Confidence 45666777889999999998887664 445777778888778887777776443
No 110
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=25.84 E-value=1.6e+02 Score=22.46 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=39.6
Q ss_pred hHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCC-------C---HHHHHHHHHHcCeEEEeC
Q 023546 31 STGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDL-------D---PEGVRRCVDEAGIGFMMS 91 (281)
Q Consensus 31 s~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~~-------s---~~~a~~~l~~~g~~fl~~ 91 (281)
....+-.+...|+++. +..|+++.|+..|+++.. + ...+.+++.+..+.|+-.
T Consensus 15 ~~~~a~~l~~~G~~i~--------aT~gTa~~L~~~gi~~~~v~~~~~~~~~~~~~i~~~i~~~~idlVIn 77 (116)
T cd01423 15 LLPTAQKLSKLGYKLY--------ATEGTADFLLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKIDLVIN 77 (116)
T ss_pred HHHHHHHHHHCCCEEE--------EccHHHHHHHHcCCCceEeeeccCCCCCCchhHHHHHHcCCceEEEE
Confidence 4567777888999997 445799999999986532 1 156888888888888754
No 111
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=24.83 E-value=37 Score=25.54 Aligned_cols=51 Identities=24% Similarity=0.207 Sum_probs=35.8
Q ss_pred cCCCcEEeeCCCCCCCccc--HHHHHHHcCCCCC----CCHHHHHHHHHHcCeEEEe
Q 023546 40 ACGAKVAKQGSRSSSSACG--SADVLEALGVVID----LDPEGVRRCVDEAGIGFMM 90 (281)
Q Consensus 40 ~~G~~V~~HG~~~~~~~~g--s~dvLe~LGi~~~----~s~~~a~~~l~~~g~~fl~ 90 (281)
+.|+.+.+|-+++...... ....|.++|+|+- .+-+...+.+.+.|+.+++
T Consensus 23 rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P~Y~hv~~~N~~~~r~~~~lg~~~~p 79 (89)
T PF08444_consen 23 RMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFPFYGHVDEDNEASQRLSKSLGFIFMP 79 (89)
T ss_pred cccccCHhHhcCCHHHHHHHHHHHHHHHCCCCeEeehHhccHHHHHHHHHCCCeecC
Confidence 4567777777777655433 5888999998854 3345777778888887765
No 112
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=24.67 E-value=50 Score=28.44 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=27.3
Q ss_pred EecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCC
Q 023546 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRS 52 (281)
Q Consensus 17 i~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~ 52 (281)
+.|.||.|+.+ ++...|..+|+.|.+|..-..+-
T Consensus 4 ~~g~~g~Gkt~--~~~~la~~~a~~g~~~~l~~~d~ 37 (217)
T cd02035 4 FTGKGGVGKTT--IAAATAVRLAEEGKKVLLVSTDP 37 (217)
T ss_pred EeCCCCchHHH--HHHHHHHHHHHCCCcEEEEECCC
Confidence 57889999986 47778888999999999866543
No 113
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=24.38 E-value=6.6e+02 Score=24.37 Aligned_cols=130 Identities=17% Similarity=0.217 Sum_probs=69.6
Q ss_pred CCcceEecCCCCCCCCccchHHHHHHHHcC----C-CcEEeeCCCCCCCcccHHH----HHHHcCCCCC--CCHHHHHHH
Q 023546 12 GDAVDIVGTGGDGANTVNISTGASILAAAC----G-AKVAKQGSRSSSSACGSAD----VLEALGVVID--LDPEGVRRC 80 (281)
Q Consensus 12 ~~~~Di~gtggdG~~t~nis~~aa~vlA~~----G-~~V~~HG~~~~~~~~gs~d----vLe~LGi~~~--~s~~~a~~~ 80 (281)
+..+-++|..|.|+ ||+.+.+++.+ | .+|...- ..+.+.|..+ .-+.+|+++. .++.+....
T Consensus 191 g~vi~lvGpnG~GK-----TTtlakLA~~~~~~~~~~~v~~i~--~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~a 263 (420)
T PRK14721 191 GGVYALIGPTGVGK-----TTTTAKLAARAVIRHGADKVALLT--TDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLM 263 (420)
T ss_pred CcEEEEECCCCCCH-----HHHHHHHHHHHHHhcCCCeEEEEe--cCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHH
Confidence 45788999999999 55666665542 2 3332211 1234555433 3356688764 455555444
Q ss_pred HH---HcCeEEEeCCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeee-ChhhHHHHHHHHHHcCCCeEEE
Q 023546 81 VD---EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVY-NENLVLKMANALQRFGLKRALV 156 (281)
Q Consensus 81 l~---~~g~~fl~~~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~-h~~~~~~~~~~~~~lg~~~~lv 156 (281)
+. +....++...-+.+....+..--+.|. ....|. -.+.|+... +..-+......++.++.+..++
T Consensus 264 l~~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~---------~~~~~~-~~~LVl~at~~~~~~~~~~~~f~~~~~~~~I~ 333 (420)
T PRK14721 264 LHELRGKHMVLIDTVGMSQRDQMLAEQIAMLS---------QCGTQV-KHLLLLNATSSGDTLDEVISAYQGHGIHGCII 333 (420)
T ss_pred HHHhcCCCEEEecCCCCCcchHHHHHHHHHHh---------ccCCCc-eEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEE
Confidence 44 456777777655554333222111111 111232 223444443 5555666667777788876666
Q ss_pred Ee
Q 023546 157 VH 158 (281)
Q Consensus 157 v~ 158 (281)
=|
T Consensus 334 TK 335 (420)
T PRK14721 334 TK 335 (420)
T ss_pred Ee
Confidence 66
No 114
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=24.02 E-value=1.6e+02 Score=25.59 Aligned_cols=56 Identities=20% Similarity=0.122 Sum_probs=39.7
Q ss_pred cceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCC
Q 023546 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVI 70 (281)
Q Consensus 14 ~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~ 70 (281)
.+|+-||-+++.+.++=..-+---|.+.|+++..=-|... +..-..+.|+.+|++.
T Consensus 12 ~~D~dG~l~~~~~~~pga~e~L~~L~~~G~~~~ivTN~~~-~~~~~~~~L~~~gl~~ 67 (242)
T TIGR01459 12 LLDLWGVIIDGNHTYPGAVQNLNKIIAQGKPVYFVSNSPR-NIFSLHKTLKSLGINA 67 (242)
T ss_pred EEecccccccCCccCccHHHHHHHHHHCCCEEEEEeCCCC-ChHHHHHHHHHCCCCc
Confidence 6899999999888655455455556778999988777432 1222347899999976
No 115
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=23.94 E-value=90 Score=28.63 Aligned_cols=33 Identities=12% Similarity=0.165 Sum_probs=22.5
Q ss_pred CCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCC
Q 023546 21 GGDGANTVNISTGASILAAACGAKVAKQGSRSSS 54 (281)
Q Consensus 21 ggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~ 54 (281)
-|.|...+++-.+..+ -+..++|.++||+.+.+
T Consensus 183 ~Y~~~p~Ld~~~L~~I-~~~~~vPLVLHGgSG~~ 215 (286)
T PRK08610 183 PYKGEPKLGFKEMEEI-GLSTGLPLVLHGGTGIP 215 (286)
T ss_pred ccCCCCCCCHHHHHHH-HHHHCCCEEEeCCCCCC
Confidence 5655445666655554 46679999999996543
No 116
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=23.75 E-value=55 Score=29.11 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=21.4
Q ss_pred ecCCCCCCCCccchHHHHHHHHcCCCcEEee
Q 023546 18 VGTGGDGANTVNISTGASILAAACGAKVAKQ 48 (281)
Q Consensus 18 ~gtggdG~~t~nis~~aa~vlA~~G~~V~~H 48 (281)
.+.||.|+.| ++.-.|..+|+.|.+|++-
T Consensus 110 s~~~g~Gktt--~a~nLA~~la~~g~~VllI 138 (274)
T TIGR03029 110 SAKSGEGCSY--IAANLAIVFSQLGEKTLLI 138 (274)
T ss_pred CCCCCCCHHH--HHHHHHHHHHhcCCeEEEE
Confidence 3458888876 4555667788999999864
No 117
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=23.69 E-value=88 Score=24.33 Aligned_cols=30 Identities=37% Similarity=0.499 Sum_probs=24.7
Q ss_pred ceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeC
Q 023546 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQG 49 (281)
Q Consensus 15 ~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG 49 (281)
|=++|++|.|+ ||++..++...|++++..+
T Consensus 2 I~i~G~~GsGK-----st~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGK-----STVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCH-----HHHHHHHHHHhCCceeccc
Confidence 44789999998 6778888888899998777
No 118
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=23.64 E-value=57 Score=24.65 Aligned_cols=64 Identities=14% Similarity=0.132 Sum_probs=38.7
Q ss_pred EeeCCCCCCCcccHHHHHHHcCCCC-------CCCHHHHHHHHHHcCeEEEeCCccChhhhchHHHHhhhC
Q 023546 46 AKQGSRSSSSACGSADVLEALGVVI-------DLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLK 109 (281)
Q Consensus 46 ~~HG~~~~~~~~gs~dvLe~LGi~~-------~~s~~~a~~~l~~~g~~fl~~~~~~P~l~~l~~lR~~lg 109 (281)
+.+|+...++-.-..+.|+..|.++ ..++++..+.|.+.||-+=.-..+.|......-+++..+
T Consensus 9 l~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts~~~~~~~l~~~~~ 79 (101)
T PF13344_consen 9 LYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIITSGMAAAEYLKEHKG 79 (101)
T ss_dssp SEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEEHHHHHHHHHHHHTT
T ss_pred eEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEChHHHHHHHHHhcCC
Confidence 3455554443333444445558743 466789999999999986666777887776666766433
No 119
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=23.58 E-value=3.9e+02 Score=21.40 Aligned_cols=88 Identities=14% Similarity=0.081 Sum_probs=53.3
Q ss_pred HHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHHHHHHcCeEEEeCC----ccChhhhchHHHHhhh
Q 023546 33 GASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMST----KYHPAMKFVRPVRKKL 108 (281)
Q Consensus 33 ~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~~s~~~a~~~l~~~g~~fl~~~----~~~P~l~~l~~lR~~l 108 (281)
+.+.++-.+|+.|+--|. +.++|+..+...+++.-++..+ ...+.++++...-++-
T Consensus 18 iv~~~L~~~GfeVidLG~--------------------~v~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~ 77 (128)
T cd02072 18 ILDHAFTEAGFNVVNLGV--------------------LSPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEA 77 (128)
T ss_pred HHHHHHHHCCCEEEECCC--------------------CCCHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHC
Confidence 455566777888775443 4578888888887776666553 4445666666666666
Q ss_pred CCCChhhhhhhccCCCCCCceEEeee--ChhhHHHHHHHHHHcCCCe
Q 023546 109 KVKTVFNILGPMLNPACVPFAVVGVY--NENLVLKMANALQRFGLKR 153 (281)
Q Consensus 109 g~Rt~~ntl~~LlNP~~~~~~v~Gv~--h~~~~~~~~~~~~~lg~~~ 153 (281)
|+|.+ +..+=|.. .++-.+...+.++.+|+++
T Consensus 78 gl~~v-------------~vivGG~~~i~~~d~~~~~~~L~~~Gv~~ 111 (128)
T cd02072 78 GLKDI-------------LLYVGGNLVVGKQDFEDVEKRFKEMGFDR 111 (128)
T ss_pred CCCCC-------------eEEEECCCCCChhhhHHHHHHHHHcCCCE
Confidence 76543 23333442 3333344456677888853
No 120
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=23.52 E-value=2.4e+02 Score=26.06 Aligned_cols=110 Identities=11% Similarity=0.063 Sum_probs=67.6
Q ss_pred HHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHHHHH---Hc--CeE----EE--eCCccChhhhchHH
Q 023546 35 SILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVD---EA--GIG----FM--MSTKYHPAMKFVRP 103 (281)
Q Consensus 35 a~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~~s~~~a~~~l~---~~--g~~----fl--~~~~~~P~l~~l~~ 103 (281)
.-.+.++|..++.|+-. ++..+++.+. -..+.++..+.++ +. |+. +| +-+..---...+..
T Consensus 159 l~~l~~aG~dv~~hnlE------t~~~l~~~vr--r~~t~e~~Le~l~~ak~~~pgi~~~TgiIVGlGETeee~~etl~~ 230 (302)
T TIGR00510 159 LDILLDAPPDVYNHNLE------TVERLTPFVR--PGATYRWSLKLLERAKEYLPNLPTKSGIMVGLGETNEEIKQTLKD 230 (302)
T ss_pred HHHHHHcCchhhccccc------chHHHHHHhC--CCCCHHHHHHHHHHHHHhCCCCeecceEEEECCCCHHHHHHHHHH
Confidence 34445566666666543 2234556554 1344554333333 32 221 11 12444444444455
Q ss_pred HHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEE
Q 023546 104 VRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRAL 155 (281)
Q Consensus 104 lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~l 155 (281)
|| ++|+ -.=++++-+.|.....-|.-+.+|+-.+.+.+.+..+|++.+.
T Consensus 231 Lr-elg~--d~v~igqYl~p~~~~~~v~~~~~p~~f~~~~~~a~~~gf~~v~ 279 (302)
T TIGR00510 231 LR-DHGV--TMVTLGQYLRPSRRHLPVKRYVSPEEFDYYRSVALEMGFLHAA 279 (302)
T ss_pred HH-hcCC--CEEEeecccCCCCCCCccccCCCHHHHHHHHHHHHHcCChheE
Confidence 54 4555 4457789999998899999999999999999999999997543
No 121
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=23.48 E-value=91 Score=29.03 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=34.0
Q ss_pred CCcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCccc
Q 023546 12 GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACG 58 (281)
Q Consensus 12 ~~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~g 58 (281)
...+-|.|+||.|++| ..-.+..-+...|.+|..---+..+++.|
T Consensus 51 a~viGITG~PGaGKST--li~~L~~~l~~~G~rVaVlAVDPSSp~TG 95 (323)
T COG1703 51 AHVIGITGVPGAGKST--LIEALGRELRERGHRVAVLAVDPSSPFTG 95 (323)
T ss_pred CcEEEecCCCCCchHH--HHHHHHHHHHHCCcEEEEEEECCCCCCCC
Confidence 3579999999999975 23345566788899999888877776644
No 122
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=23.46 E-value=1.6e+02 Score=25.60 Aligned_cols=70 Identities=23% Similarity=0.122 Sum_probs=45.3
Q ss_pred cceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHH-cCCCCC-----CCHHHHHHHHHH
Q 023546 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEA-LGVVID-----LDPEGVRRCVDE 83 (281)
Q Consensus 14 ~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~-LGi~~~-----~s~~~a~~~l~~ 83 (281)
.+|+-||=++|.+.++-..-+-.-+-+.|+++....|...-+.....+.|.. +|+++. .+..-+.+.|.+
T Consensus 2 lfD~DGvL~~~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~iits~~~~~~~l~~ 77 (236)
T TIGR01460 2 LFDIDGVLWLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQIITSGSVTKDLLRQ 77 (236)
T ss_pred EEeCcCccCcCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHHHeeeHHHHHHHHHHH
Confidence 4688888888877555333333344566999999998876565556666777 788643 223445566665
No 123
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=23.44 E-value=59 Score=24.11 Aligned_cols=49 Identities=16% Similarity=0.280 Sum_probs=32.7
Q ss_pred HHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCC----CC--CCHH------HHHHHHHHcCeEEEe
Q 023546 34 ASILAAACGAKVAKQGSRSSSSACGSADVLEALGVV----ID--LDPE------GVRRCVDEAGIGFMM 90 (281)
Q Consensus 34 aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~----~~--~s~~------~a~~~l~~~g~~fl~ 90 (281)
.|.-++..|+.+. +..|+++.|+.-|++ +. ..++ ++.+.+++..|.++-
T Consensus 5 ~a~~l~~lG~~i~--------AT~gTa~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVI 65 (95)
T PF02142_consen 5 LAKRLAELGFEIY--------ATEGTAKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVI 65 (95)
T ss_dssp HHHHHHHTTSEEE--------EEHHHHHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHCCCEEE--------EChHHHHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEE
Confidence 4556778888877 456789999999988 22 2221 288888988888663
No 124
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=23.22 E-value=1.3e+02 Score=30.45 Aligned_cols=52 Identities=23% Similarity=0.248 Sum_probs=44.8
Q ss_pred ChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEecCCcc
Q 023546 112 TVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLD 163 (281)
Q Consensus 112 t~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~GeG~d 163 (281)
.+-|.++||+.=+...+-|+=-.+|.+..-+++.+....++..++|.|||+-
T Consensus 198 ~F~~~v~Pll~~A~i~~evv~T~~~~HArei~rt~dl~kyDgIv~vsGDGl~ 249 (579)
T KOG1116|consen 198 LFKNHVEPLLSEAGISFEVVLTTRPNHAREIVRTLDLGKYDGIVCVSGDGLL 249 (579)
T ss_pred HHHhhhhhhhhhcCceEEEEEecCccHHHHHHHhhhccccceEEEecCCcCH
Confidence 5678888999988888888888999999999998877788888888999965
No 125
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=22.94 E-value=1e+02 Score=28.27 Aligned_cols=33 Identities=9% Similarity=0.067 Sum_probs=23.3
Q ss_pred CCCCCCC-ccchHHHHHHHHcCCCcEEeeCCCCCC
Q 023546 21 GGDGANT-VNISTGASILAAACGAKVAKQGSRSSS 54 (281)
Q Consensus 21 ggdG~~t-~nis~~aa~vlA~~G~~V~~HG~~~~~ 54 (281)
-|.+... +++-.+..+ -...++|.++||+.+.+
T Consensus 185 ~y~~~p~~Ld~~~L~~I-~~~v~vPLVlHGgSG~~ 218 (288)
T TIGR00167 185 VYKGEPKGLDFERLEEI-QKYVNLPLVLHGGSGIP 218 (288)
T ss_pred ccCCCCCccCHHHHHHH-HHHhCCCEEEeCCCCCC
Confidence 5655444 788777666 45569999999997644
No 126
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=22.75 E-value=2.9e+02 Score=19.63 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHcCCCeEEEEec
Q 023546 138 LVLKMANALQRFGLKRALVVHS 159 (281)
Q Consensus 138 ~~~~~~~~~~~lg~~~~lvv~G 159 (281)
.....+..++..|++++.++.|
T Consensus 68 ~s~~a~~~l~~~G~~~v~~l~g 89 (96)
T cd01444 68 SSAQLAQALREAGFTDVRSLAG 89 (96)
T ss_pred hHHHHHHHHHHcCCceEEEcCC
Confidence 3456677778888877776664
No 127
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=22.56 E-value=60 Score=29.18 Aligned_cols=31 Identities=32% Similarity=0.410 Sum_probs=22.1
Q ss_pred ceEecCCCCCCCCccchHH-HHHHHHcCCCcEEe
Q 023546 15 VDIVGTGGDGANTVNISTG-ASILAAACGAKVAK 47 (281)
Q Consensus 15 ~Di~gtggdG~~t~nis~~-aa~vlA~~G~~V~~ 47 (281)
|=|||-||.|++| ++.+ +.-+++..|+.|+-
T Consensus 3 IaI~GKGG~GKTt--iaalll~~l~~~~~~~VLv 34 (255)
T COG3640 3 IAITGKGGVGKTT--IAALLLKRLLSKGGYNVLV 34 (255)
T ss_pred EEEecCCCccHHH--HHHHHHHHHHhcCCceEEE
Confidence 4589999999976 4444 44555666788884
No 128
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=22.48 E-value=1.3e+02 Score=26.89 Aligned_cols=70 Identities=17% Similarity=-0.029 Sum_probs=46.3
Q ss_pred cceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCC-----CHHHHHHHHHH
Q 023546 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDL-----DPEGVRRCVDE 83 (281)
Q Consensus 14 ~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~~-----s~~~a~~~l~~ 83 (281)
.+|+-||=++|.+.++=..-+---+-+.|+++..=-|++..++....+.|+.+|++... +..-+.+.|.+
T Consensus 6 ~~D~DGtl~~~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~~~i~ts~~~~~~~l~~ 80 (279)
T TIGR01452 6 IFDCDGVLWLGERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLAEQLFSSALCAARLLRQ 80 (279)
T ss_pred EEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEecHHHHHHHHHHh
Confidence 46888888887775554333444556789999877777655555566788999997552 12344456666
No 129
>PRK10037 cell division protein; Provisional
Probab=22.19 E-value=50 Score=29.03 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=20.2
Q ss_pred CCCCCCCccchHHHHHHHHcCCCcEEee
Q 023546 21 GGDGANTVNISTGASILAAACGAKVAKQ 48 (281)
Q Consensus 21 ggdG~~t~nis~~aa~vlA~~G~~V~~H 48 (281)
||.|+.| ++.-.|..||..|.+|+.-
T Consensus 11 GGvGKTT--~a~nLA~~La~~G~rVLlI 36 (250)
T PRK10037 11 GGVGTTS--ITAALAWSLQMLGENVLVI 36 (250)
T ss_pred CCccHHH--HHHHHHHHHHhcCCcEEEE
Confidence 8999986 3555666788999999964
No 130
>PRK08356 hypothetical protein; Provisional
Probab=22.10 E-value=93 Score=26.20 Aligned_cols=33 Identities=21% Similarity=0.168 Sum_probs=25.3
Q ss_pred cceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCC
Q 023546 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRS 52 (281)
Q Consensus 14 ~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~ 52 (281)
.+=++|++|.|+ +|.+-.+ +..|++++.+|++-
T Consensus 7 ~i~~~G~~gsGK-----~t~a~~l-~~~g~~~is~~~~~ 39 (195)
T PRK08356 7 IVGVVGKIAAGK-----TTVAKFF-EEKGFCRVSCSDPL 39 (195)
T ss_pred EEEEECCCCCCH-----HHHHHHH-HHCCCcEEeCCCcc
Confidence 355799999999 4555555 57899999999854
No 131
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=22.08 E-value=67 Score=31.45 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=28.7
Q ss_pred EecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCC
Q 023546 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSS 54 (281)
Q Consensus 17 i~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~ 54 (281)
|+-||-+|++| .+++.+-++-++|.++.+=||=+.+
T Consensus 113 vaITGTNGKTT--TTsli~~~l~~~G~~~~lgGNIG~p 148 (448)
T COG0771 113 VAITGTNGKTT--TTSLIAHLLKAAGLDALLGGNIGTP 148 (448)
T ss_pred EEEECCCchHH--HHHHHHHHHHhcCCCceeccccCcc
Confidence 45678888885 4777888999999999999996543
No 132
>PF03814 KdpA: Potassium-transporting ATPase A subunit; InterPro: IPR004623 Kdp is a high affinity ATP-driven K+ transport system in Escherichia coli. It is composed of three membrane-bound subunits, KdpA, KdpB and KdpC and one small peptide, KdpF. KdpA is the K+-transporting subunit of this complex. During assembly of the complex, KdpA and KdpC bind to each other. This interaction is thought to stabilise the complex. Data indicates that KdpC might connect the KdpA, the K+-transporting subunit, to KdpB, the ATP-hydrolysing (energy providing) subunit [].; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0005886 plasma membrane
Probab=21.92 E-value=32 Score=34.35 Aligned_cols=66 Identities=17% Similarity=0.284 Sum_probs=51.5
Q ss_pred CccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHHHHHHcCeEEEeCCccCh
Q 023546 27 TVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHP 96 (281)
Q Consensus 27 t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~~s~~~a~~~l~~~g~~fl~~~~~~P 96 (281)
-+|+|...|+++.++|+|--.++...++.-.|..+.+. +| |++ ..++.++|-.+|=+|..+..-||
T Consensus 174 LLPlS~v~AliLv~qGVpQtf~~~~~v~tleg~~Q~i~-~G-PvA--s~eaIK~LGTNGGGff~aNSAhP 239 (552)
T PF03814_consen 174 LLPLSFVFALILVSQGVPQTFSGYVTVTTLEGATQTIP-LG-PVA--SQEAIKQLGTNGGGFFGANSAHP 239 (552)
T ss_pred HHHHHHHHHHHHHhcCccccccCCceeeeeccceeeec-cC-ccH--HHHHHHHhccCCCcccCCCCCCC
Confidence 46789999999999999999999988766555444322 22 333 47889999999999999987777
No 133
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=21.69 E-value=1e+02 Score=28.14 Aligned_cols=33 Identities=9% Similarity=0.061 Sum_probs=23.9
Q ss_pred CCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCC
Q 023546 21 GGDGANTVNISTGASILAAACGAKVAKQGSRSSS 54 (281)
Q Consensus 21 ggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~ 54 (281)
-|.+...+++-.+..+ -+..++|.++||+.+.+
T Consensus 180 ~yk~~p~Ldf~~L~~I-~~~~~iPLVlHGgSG~~ 212 (282)
T TIGR01858 180 LYKKTPKLDFDRLAEI-REVVDVPLVLHGASDVP 212 (282)
T ss_pred CcCCCCccCHHHHHHH-HHHhCCCeEEecCCCCC
Confidence 5655446777766666 45669999999997764
No 134
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=21.60 E-value=51 Score=33.49 Aligned_cols=25 Identities=44% Similarity=0.512 Sum_probs=18.6
Q ss_pred ceEecCCCCCCCCccc-------hHHHHHHHH
Q 023546 15 VDIVGTGGDGANTVNI-------STGASILAA 39 (281)
Q Consensus 15 ~Di~gtggdG~~t~ni-------s~~aa~vlA 39 (281)
=|.+|||||...+|++ |=++|+.+|
T Consensus 480 pDtvgtGGDSHTRfpiGisFpAgSGlVAfAaa 511 (852)
T COG1049 480 PDTVGTGGDSHTRFPIGISFPAGSGLVAFAAA 511 (852)
T ss_pred CcceecCCcccccccccceecCCCchhhhhHh
Confidence 4789999999988886 445566544
No 135
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=21.58 E-value=76 Score=29.06 Aligned_cols=36 Identities=14% Similarity=0.096 Sum_probs=23.1
Q ss_pred ecCCCCC--CCCccchHHHHHHHHcCCCcEEeeCCCCCC
Q 023546 18 VGTGGDG--ANTVNISTGASILAAACGAKVAKQGSRSSS 54 (281)
Q Consensus 18 ~gtggdG--~~t~nis~~aa~vlA~~G~~V~~HG~~~~~ 54 (281)
+| .|.+ .-.+++-.+..+--+..++|.++||+.+.+
T Consensus 180 HG-~y~~~~~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~~ 217 (287)
T PF01116_consen 180 HG-MYKGGKKPKLDFDRLKEIREAVPDIPLVLHGGSGLP 217 (287)
T ss_dssp SS-SBSSSSSTC--HHHHHHHHHHHHTSEEEESSCTTS-
T ss_pred cc-ccCCCCCcccCHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 44 6666 446777777666544448999999997644
No 136
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=21.57 E-value=1.2e+02 Score=28.45 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=28.9
Q ss_pred chHHHHHHHHcCCCcEEeeCCC--C--CCCc-----ccHHHHHHHcCC
Q 023546 30 ISTGASILAAACGAKVAKQGSR--S--SSSA-----CGSADVLEALGV 68 (281)
Q Consensus 30 is~~aa~vlA~~G~~V~~HG~~--~--~~~~-----~gs~dvLe~LGi 68 (281)
.-+++|+.|++.|++|...--. . ..++ .++.++|+.||+
T Consensus 13 aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~ 60 (387)
T COG0654 13 AGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGL 60 (387)
T ss_pred HHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCC
Confidence 4678999999999999975554 1 1112 238999999998
No 137
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=21.56 E-value=1.1e+02 Score=28.52 Aligned_cols=31 Identities=6% Similarity=0.158 Sum_probs=23.2
Q ss_pred CCCCccchHHHHHHHHcCCCcEEeeCCCCCCC
Q 023546 24 GANTVNISTGASILAAACGAKVAKQGSRSSSS 55 (281)
Q Consensus 24 G~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~ 55 (281)
|...+|+-.+..+ -...++|.++||+.+++.
T Consensus 187 ~~p~L~f~~L~~I-~~~~~iPLVLHGgSGip~ 217 (307)
T PRK05835 187 GEPKLDFERLQEV-KRLTNIPLVLHGASAIPD 217 (307)
T ss_pred CCCccCHHHHHHH-HHHhCCCEEEeCCCCCch
Confidence 4346777777665 556699999999988765
No 138
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=21.51 E-value=1.2e+02 Score=27.78 Aligned_cols=33 Identities=9% Similarity=0.147 Sum_probs=23.2
Q ss_pred CCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCC
Q 023546 21 GGDGANTVNISTGASILAAACGAKVAKQGSRSSS 54 (281)
Q Consensus 21 ggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~ 54 (281)
-|.|...+++-.+..+ -...++|.++||+.+.+
T Consensus 183 ~Y~~~p~L~~~~L~~I-~~~~~iPLVLHGgSG~~ 215 (285)
T PRK07709 183 PYKGEPNLGFAEMEQV-RDFTGVPLVLHGGTGIP 215 (285)
T ss_pred CcCCCCccCHHHHHHH-HHHHCCCEEEeCCCCCC
Confidence 4666556777666554 56679999999996544
No 139
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=21.46 E-value=7.7e+02 Score=24.17 Aligned_cols=133 Identities=17% Similarity=0.201 Sum_probs=82.8
Q ss_pred CcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCc---cc-------------HHHHHHHcCCCCCCC---
Q 023546 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSA---CG-------------SADVLEALGVVIDLD--- 73 (281)
Q Consensus 13 ~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~---~g-------------s~dvLe~LGi~~~~s--- 73 (281)
..|=++|.|-+| ..+|.-|+..|+.|..+++...... .| -.+.|+..|+.+...
T Consensus 124 ~~VaviGaGPAG-------l~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~v 196 (457)
T COG0493 124 KKVAVIGAGPAG-------LAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRV 196 (457)
T ss_pred CEEEEECCCchH-------hhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceE
Confidence 446666755544 4679999999999999999775431 22 356788888654311
Q ss_pred --HHHHHHHHHHcCeEEEe---------------CCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeCh
Q 023546 74 --PEGVRRCVDEAGIGFMM---------------STKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNE 136 (281)
Q Consensus 74 --~~~a~~~l~~~g~~fl~---------------~~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~ 136 (281)
.-++++.+++.-.+|+. ++..+.++..|..++++... .... .+...+.+.+..|+|.-.-
T Consensus 197 G~~it~~~L~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~-~~~~--~~~~~~~gk~vvVIGgG~T 273 (457)
T COG0493 197 GRDITLEELLKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLG-DFAE--DRTPPAKGKRVVVIGGGDT 273 (457)
T ss_pred CCcCCHHHHHHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhc-cccc--ccCCCCCCCeEEEECCCCC
Confidence 22344444555555553 34667778888887654432 1111 1223334577889999886
Q ss_pred hhHHHHHHHHHHcCCCeEEEE
Q 023546 137 NLVLKMANALQRFGLKRALVV 157 (281)
Q Consensus 137 ~~~~~~~~~~~~lg~~~~lvv 157 (281)
+..-. .....+|.+.+.++
T Consensus 274 a~D~~--~t~~r~Ga~~v~~~ 292 (457)
T COG0493 274 AMDCA--GTALRLGAKSVTCF 292 (457)
T ss_pred HHHHH--HHHhhcCCeEEEEe
Confidence 65433 66778898888777
No 140
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=21.43 E-value=1.4e+02 Score=20.54 Aligned_cols=37 Identities=22% Similarity=0.203 Sum_probs=27.9
Q ss_pred ccHHHHHHHcCCCCC--CCHHHHHHHHHHcCeEEEeCCc
Q 023546 57 CGSADVLEALGVVID--LDPEGVRRCVDEAGIGFMMSTK 93 (281)
Q Consensus 57 ~gs~dvLe~LGi~~~--~s~~~a~~~l~~~g~~fl~~~~ 93 (281)
.+.+++++.|+.+.. ++.+++++.+++.|---+..+.
T Consensus 4 ~~~~~v~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~ 42 (69)
T PF00690_consen 4 LSVEEVLKRLNTSSSQGLSSEEVEERRKKYGPNELPEPK 42 (69)
T ss_dssp SSHHHHHHHHTTBTSSBBTHHHHHHHHHHHSSSSTTTTT
T ss_pred CCHHHHHHHHCcCCCCCCCHHHHHHHHHhcccccccccc
Confidence 457899999985433 8899999999999875554433
No 141
>TIGR00680 kdpA K+-transporting ATPase, KdpA. Kdp is a high affinity ATP-driven K+ transport system in Escherichia coli. It is composed of three membrane-bound subunits, KdpA, KdpB and KdpC and one small peptide, KdpF. KdpA is the K+-transporting subunit of this complex. During assembly of the complex, KdpA and KdpC bind to each other. This interaction is thought to stabilize the complex [PubMed:9858692]. Data indicates that KdpC might connect the KdpA, the K+-transporting subunit, to KdpB, the ATP-hydrolyzing (energy providing) subunit PubMed:9858692].
Probab=21.41 E-value=37 Score=33.95 Aligned_cols=66 Identities=20% Similarity=0.289 Sum_probs=48.9
Q ss_pred CccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHHHHHHcCeEEEeCCccCh
Q 023546 27 TVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHP 96 (281)
Q Consensus 27 t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~~s~~~a~~~l~~~g~~fl~~~~~~P 96 (281)
-+|+|...|+++.++|+|--.++...+..-.|..+.+ .+| |++ ..++.++|-.+|=+|..+..-||
T Consensus 182 LLPlS~i~Al~lv~qGvpQt~~~~~~v~tleg~~Q~I-~~G-PvA--SqeAIK~LGTNGGGff~aNSAHP 247 (563)
T TIGR00680 182 LLPISLVGAILLLVQGVPQNLAGPAQVNTLEGATQLI-PRG-PVA--SQEAIKELGTNGGGFFNINSAHP 247 (563)
T ss_pred HHHHHHHHHHHHHhCCCCcccCCCceeEeccCceeee-cCC-chH--hHHHHHHhccCCCcCCCCCCCCC
Confidence 4678999999999999999999887765444422211 122 332 37889999999999999977777
No 142
>PHA02518 ParA-like protein; Provisional
Probab=21.17 E-value=60 Score=27.20 Aligned_cols=29 Identities=31% Similarity=0.341 Sum_probs=20.7
Q ss_pred CCCCCCCCccchHHHHHHHHcCCCcEEeeCC
Q 023546 20 TGGDGANTVNISTGASILAAACGAKVAKQGS 50 (281)
Q Consensus 20 tggdG~~t~nis~~aa~vlA~~G~~V~~HG~ 50 (281)
-||.|+.| ++...|-.+|+.|.+|+.-=.
T Consensus 9 KGGvGKTT--~a~~la~~la~~g~~vlliD~ 37 (211)
T PHA02518 9 KGGAGKTT--VATNLASWLHADGHKVLLVDL 37 (211)
T ss_pred CCCCCHHH--HHHHHHHHHHhCCCeEEEEeC
Confidence 38899976 344455668889999996544
No 143
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=21.03 E-value=1.3e+02 Score=26.53 Aligned_cols=96 Identities=25% Similarity=0.362 Sum_probs=53.0
Q ss_pred eeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHHHHHHcCeEEEeCCccChhhhchHH---------HHhhhCCCChhhhh
Q 023546 47 KQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRP---------VRKKLKVKTVFNIL 117 (281)
Q Consensus 47 ~HG~~~~~~~~gs~dvLe~LGi~~~~s~~~a~~~l~~~g~~fl~~~~~~P~l~~l~~---------lR~~lg~Rt~~ntl 117 (281)
+.|+- .|+|+...++|+++|+++ .+.+.+++..-+.|- |.|-+-...+-. =|+.||.| +||-
T Consensus 6 LTGgi-atGKStVs~~f~~~G~~v-IDaD~vaR~vv~PG~-----p~~~~ive~FG~eiLl~~G~inR~~LG~~-vF~~- 76 (225)
T KOG3220|consen 6 LTGGI-ATGKSTVSQVFKALGIPV-IDADVVAREVVEPGT-----PAYRRIVEAFGTEILLEDGEINRKVLGKR-VFSD- 76 (225)
T ss_pred eeccc-ccChHHHHHHHHHcCCcE-ecHHHHHHHHhcCCC-----hHHHHHHHHhCceeeccCCcccHHHHhHH-HhCC-
Confidence 44443 367888999999999997 456777766655542 222221111111 14555543 2222
Q ss_pred hhccCCCCCCceEEeeeChhhHHHH-HHHHHHc--CCCeEEEEe
Q 023546 118 GPMLNPACVPFAVVGVYNENLVLKM-ANALQRF--GLKRALVVH 158 (281)
Q Consensus 118 ~~LlNP~~~~~~v~Gv~h~~~~~~~-~~~~~~l--g~~~~lvv~ 158 (281)
| .-...+.++.||.....| -|.++.+ |+ +.+|+.
T Consensus 77 -----~-~~r~~Ln~IthP~Ir~em~ke~~~~~l~G~-r~ivlD 113 (225)
T KOG3220|consen 77 -----P-KKRQALNKITHPAIRKEMFKEILKLLLRGY-RVIVLD 113 (225)
T ss_pred -----H-HHHHHHHhcccHHHHHHHHHHHHHHHhcCC-eEEEEe
Confidence 2 112335578898876544 4555543 76 677754
No 144
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=21.03 E-value=2.7e+02 Score=20.16 Aligned_cols=48 Identities=17% Similarity=0.262 Sum_probs=27.9
Q ss_pred HHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCC-C--C----HHHHHHHHHHcCeEEE
Q 023546 34 ASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID-L--D----PEGVRRCVDEAGIGFM 89 (281)
Q Consensus 34 aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~-~--s----~~~a~~~l~~~g~~fl 89 (281)
.+--+++.|+++. +..|+++.|+.-|+++. . . ...+.+.+.+..+.++
T Consensus 5 ~~~~l~~lG~~i~--------AT~gTa~~L~~~Gi~~~~~~~ki~~~~~~i~~~i~~g~id~V 59 (90)
T smart00851 5 LAKRLAELGFELV--------ATGGTAKFLREAGLPVKTLHPKVHGGILAILDLIKNGEIDLV 59 (90)
T ss_pred HHHHHHHCCCEEE--------EccHHHHHHHHCCCcceeccCCCCCCCHHHHHHhcCCCeEEE
Confidence 3444666777776 33456777777777653 1 0 1235566666666655
No 145
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=20.91 E-value=57 Score=28.20 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=23.2
Q ss_pred cCCCCCCCCccchHHHHHHHHcCCCcEEeeCCC
Q 023546 19 GTGGDGANTVNISTGASILAAACGAKVAKQGSR 51 (281)
Q Consensus 19 gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~ 51 (281)
+-||.|+.| ++...|..+|..|.+|+.-=.+
T Consensus 9 ~KGGvGKTt--~a~nla~~la~~g~~VlliD~D 39 (246)
T TIGR03371 9 VKGGVGKTT--LTANLASALKLLGEPVLAIDLD 39 (246)
T ss_pred CCCCccHHH--HHHHHHHHHHhCCCcEEEEeCC
Confidence 368999986 4555777788899999975444
No 146
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=20.87 E-value=3.3e+02 Score=25.46 Aligned_cols=105 Identities=20% Similarity=0.198 Sum_probs=56.9
Q ss_pred hHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHc---CCCCC-----CCHH---HHHHHHHHcC-----eEEEeCCcc
Q 023546 31 STGASILAAACGAKVAKQGSRSSSSACGSADVLEAL---GVVID-----LDPE---GVRRCVDEAG-----IGFMMSTKY 94 (281)
Q Consensus 31 s~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~L---Gi~~~-----~s~~---~a~~~l~~~g-----~~fl~~~~~ 94 (281)
..-++=.+.+.|+++.|-|++.++. .++|+.+ |-|+- .+.+ .+.+.+.+.| ++.|.-..-
T Consensus 98 d~~svd~l~~~~v~~~KIaS~~~~n----~pLL~~~A~~gkPvilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~ 173 (329)
T TIGR03569 98 DLESADFLEDLGVPRFKIPSGEITN----APLLKKIARFGKPVILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHCTTE 173 (329)
T ss_pred CHHHHHHHHhcCCCEEEECcccccC----HHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCC
Confidence 4456667788999999999988765 3444444 44432 2344 4445555544 777665555
Q ss_pred ChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCC
Q 023546 95 HPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLK 152 (281)
Q Consensus 95 ~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~ 152 (281)
.|.-..-..||..=-+|..|+. | +|+.+......+.-++-.+|..
T Consensus 174 YP~~~~~~nL~~I~~Lk~~f~~------p-------VG~SdHt~G~~~~~aAvalGA~ 218 (329)
T TIGR03569 174 YPAPFEDVNLNAMDTLKEAFDL------P-------VGYSDHTLGIEAPIAAVALGAT 218 (329)
T ss_pred CCCCcccCCHHHHHHHHHHhCC------C-------EEECCCCccHHHHHHHHHcCCC
Confidence 5554444444432222222211 2 3544444444556666667763
No 147
>PRK01184 hypothetical protein; Provisional
Probab=20.87 E-value=3.3e+02 Score=22.25 Aligned_cols=15 Identities=33% Similarity=0.189 Sum_probs=10.2
Q ss_pred CCHHHHHHHHHHHHH
Q 023546 243 NTLAEGVALAREIQL 257 (281)
Q Consensus 243 ~~~~eg~~~A~~~l~ 257 (281)
.++++-.++++++|+
T Consensus 163 ~~~~~l~~~v~~~~~ 177 (184)
T PRK01184 163 STLEEFRARVRKLLE 177 (184)
T ss_pred CCHHHHHHHHHHHHH
Confidence 467777777776663
No 148
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=20.70 E-value=67 Score=20.34 Aligned_cols=27 Identities=7% Similarity=0.215 Sum_probs=18.3
Q ss_pred eeChhhHHHHHHHHHHcCCCeEEEEec
Q 023546 133 VYNENLVLKMANALQRFGLKRALVVHS 159 (281)
Q Consensus 133 v~h~~~~~~~~~~~~~lg~~~~lvv~G 159 (281)
+..-.-.+-+.+.++.+..++.++|+|
T Consensus 14 fSgHad~~~L~~~i~~~~p~~vilVHG 40 (43)
T PF07521_consen 14 FSGHADREELLEFIEQLNPRKVILVHG 40 (43)
T ss_dssp CSSS-BHHHHHHHHHHHCSSEEEEESS
T ss_pred ecCCCCHHHHHHHHHhcCCCEEEEecC
Confidence 333344555677777777788999998
No 149
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=20.63 E-value=73 Score=28.51 Aligned_cols=31 Identities=29% Similarity=0.431 Sum_probs=23.6
Q ss_pred ceEecC-CCCCCCCccchHHHHHHHHcCCCcEEe
Q 023546 15 VDIVGT-GGDGANTVNISTGASILAAACGAKVAK 47 (281)
Q Consensus 15 ~Di~gt-ggdG~~t~nis~~aa~vlA~~G~~V~~ 47 (281)
|=++|+ ||.|+.| ++-.+|-.|++.|.+|+-
T Consensus 4 iai~s~kGGvG~TT--ltAnLA~aL~~~G~~Vla 35 (243)
T PF06564_consen 4 IAIVSPKGGVGKTT--LTANLAWALARLGESVLA 35 (243)
T ss_pred EEEecCCCCCCHHH--HHHHHHHHHHHCCCcEEE
Confidence 445665 8888876 556678889999999985
No 150
>PF00538 Linker_histone: linker histone H1 and H5 family; InterPro: IPR005818 Histone proteins have central roles in both chromatin organisation (as structural units of the nucleosome) and gene regulation (as dynamic components that have a direct impact on DNA transcription and replication). Eukaryotic DNA wraps around a histone octamer to form a nucleosome, the first order of compaction of eukaryotic chromatin. The core histone octamer is composed of a central H3-H4 tetramer and two flanking H2A-H2B dimers. Each of the core histone contains a common structural motif, called the histone fold, which facilitates the interactions between the individual core histones. In addition to the core histones, there is a "linker histone" called H1 (or H5 in avian species). The linker histones present in all multicellular eukaryotes are the most divergent group of histones, with numerous cell type- and stage-specific variant. Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures. Histone H5 performs the same function as histone H1, and replaces H1 in certain cells. The structure of GH5, the globular domain of the linker histone H5 is known [, ]. The fold is similar to the DNA-binding domain of the catabolite gene activator protein, CAP, thus providing a possible model for the binding of GH5 to DNA. The linker histones, which do not contain the histone fold motif, are critical to the higher-order compaction of chromatin, because they bind to internucleosomal DNA and facilitate interactions between individual nucleosomes. In addition, H1 variants have been shown to be involved in the regulation of developmental genes. A common feature of this protein family is a tripartite structure in which a globular (H15) domain of about 80 amino acids is flanked by two less structured N- and C-terminal tails. The H15 domain is also characterised by high sequence homology among the family of linker histones. The highly conserved H15 domain is essential for the binding of H1 or H5 to the nucleosome. It consists of a three helix bundle (I-III), with a beta-hairpin at the C terminus. There is also a short three-residue stretch between helices I and II that is in the beta-strand conformation. Together with the C-terminal beta-hairpin, this strand forms the third strand of an antiparallel beta-sheet [, , , ]. Proteins known to contain a H15 domain are: - Eukaryotic histone H1. The histones H1 constitute a family with many variants, differing in their affinity for chromatin. Several variants are simultaneously present in a single cell. For example, the nucleated erythrocytes of birds contain both H1 and H5, the latter being an extreme variant of H1. - Eukaryotic MHYST family of histone acetyltransferase. Histone acetyltransferases transfer an acetyl group from acetyl-CoA to the epsylon- amino group of lysine within the basic NH2-termini of histones, which bind the acidic phosphates of DNA []. This entry represents the H15 domain.; GO: 0003677 DNA binding, 0006334 nucleosome assembly, 0000786 nucleosome, 0005634 nucleus; PDB: 2LSO_A 2RQP_A 1UHM_A 1UST_A 1GHC_A 1HST_A 1YQA_A 1USS_A.
Probab=20.53 E-value=85 Score=22.43 Aligned_cols=19 Identities=5% Similarity=0.013 Sum_probs=16.3
Q ss_pred eChhhHHHHHHHHHHcCCC
Q 023546 134 YNENLVLKMANALQRFGLK 152 (281)
Q Consensus 134 ~h~~~~~~~~~~~~~lg~~ 152 (281)
.||+|.+++.+++..++.+
T Consensus 1 shP~y~~mI~eAI~~l~er 19 (77)
T PF00538_consen 1 SHPPYSDMILEAIKALKER 19 (77)
T ss_dssp -SSCHHHHHHHHHHHCCSS
T ss_pred CCCCHHHHHHHHHHHcCCC
Confidence 4999999999999999754
No 151
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=20.32 E-value=82 Score=24.28 Aligned_cols=56 Identities=9% Similarity=0.031 Sum_probs=38.7
Q ss_pred CCCCCCCHHHHHHHHHHcCeEEEeCC--ccChhhhchHHHHhhh--CCCChhhhhhhccC
Q 023546 67 GVVIDLDPEGVRRCVDEAGIGFMMST--KYHPAMKFVRPVRKKL--KVKTVFNILGPMLN 122 (281)
Q Consensus 67 Gi~~~~s~~~a~~~l~~~g~~fl~~~--~~~P~l~~l~~lR~~l--g~Rt~~ntl~~LlN 122 (281)
|.+-+.+-..|.+.|+++|+.|-... .-.|....|..+=+.+ |.+.+||+=++...
T Consensus 6 ~~~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~n~~~~~~k 65 (115)
T cd03032 6 TSPSCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEILSLTENGVEDIISTRSKAFK 65 (115)
T ss_pred eCCCCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHHHHhcCCHHHHHhcCcHHHH
Confidence 55666677889999999988776653 4566677777777766 55666666554433
No 152
>COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=20.27 E-value=54 Score=22.87 Aligned_cols=13 Identities=15% Similarity=0.307 Sum_probs=10.2
Q ss_pred CCCceEEeeeChh
Q 023546 125 CVPFAVVGVYNEN 137 (281)
Q Consensus 125 ~~~~~v~Gv~h~~ 137 (281)
++.-|++|+|+|+
T Consensus 54 ~~neQ~igiF~Pe 66 (66)
T COG3529 54 RKNEQVIGIFPPE 66 (66)
T ss_pred CccceeeeccCCC
Confidence 3466999999984
No 153
>PRK11670 antiporter inner membrane protein; Provisional
Probab=20.16 E-value=64 Score=30.59 Aligned_cols=31 Identities=32% Similarity=0.444 Sum_probs=23.6
Q ss_pred ecCCCCCCCCccchHHHHHHHHcCCCcEEeeCC
Q 023546 18 VGTGGDGANTVNISTGASILAAACGAKVAKQGS 50 (281)
Q Consensus 18 ~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~ 50 (281)
-|-||.|++| ++.-.|..+|+.|.+|+.-=.
T Consensus 114 S~KGGVGKTT--~avNLA~aLA~~G~rVlLID~ 144 (369)
T PRK11670 114 SGKGGVGKSS--TAVNLALALAAEGAKVGILDA 144 (369)
T ss_pred CCCCCCCHHH--HHHHHHHHHHHCCCcEEEEeC
Confidence 4568999986 466677888999999986533
No 154
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=20.10 E-value=1.1e+02 Score=25.09 Aligned_cols=28 Identities=21% Similarity=0.394 Sum_probs=22.5
Q ss_pred EecCCCCCCCCccchHHHHHHHHcCCCcEEeeC
Q 023546 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQG 49 (281)
Q Consensus 17 i~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG 49 (281)
++|.+|.|+ ||.+..++...|++++-.|
T Consensus 4 i~G~pGsGK-----st~a~~la~~~~~~~is~~ 31 (183)
T TIGR01359 4 VLGGPGSGK-----GTQCAKIVENFGFTHLSAG 31 (183)
T ss_pred EECCCCCCH-----HHHHHHHHHHcCCeEEECC
Confidence 689999999 7788888888888777544
No 155
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=20.03 E-value=3.4e+02 Score=26.45 Aligned_cols=81 Identities=19% Similarity=0.169 Sum_probs=46.6
Q ss_pred CcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHH----HHHHcCCCCCC-----CHH----HHHH
Q 023546 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSAD----VLEALGVVIDL-----DPE----GVRR 79 (281)
Q Consensus 13 ~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~d----vLe~LGi~~~~-----s~~----~a~~ 79 (281)
..+=++|.+|.|+.|. ..-.|..+...|.+|..-..+.. +.+..+ +-+.+|+|+.. ++. ++.+
T Consensus 96 ~vI~lvG~~GsGKTTt--aakLA~~L~~~g~kV~lV~~D~~--R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 96 QTIMLVGLQGSGKTTT--AAKLARYFKKKGLKVGLVAADTY--RPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred eEEEEECCCCCcHHHH--HHHHHHHHHHcCCeEEEecCCCC--CHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 3556899999999741 22234445677998887554432 334444 34556876542 222 2223
Q ss_pred HHHHcCeEEEeCCccChh
Q 023546 80 CVDEAGIGFMMSTKYHPA 97 (281)
Q Consensus 80 ~l~~~g~~fl~~~~~~P~ 97 (281)
.+.+..+.+++.+--++.
T Consensus 172 ~~~~~DvVIIDTAGr~~~ 189 (437)
T PRK00771 172 KFKKADVIIVDTAGRHAL 189 (437)
T ss_pred HhhcCCEEEEECCCcccc
Confidence 334567888888654443
Done!