Query 023546
Match_columns 281
No_of_seqs 133 out of 1124
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 08:40:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023546.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023546hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1khd_A Anthranilate phosphorib 100.0 8.1E-75 2.8E-79 538.0 29.9 269 1-270 72-343 (345)
2 1vqu_A Anthranilate phosphorib 100.0 3.7E-74 1.3E-78 538.4 33.1 273 1-273 86-373 (374)
3 4hkm_A Anthranilate phosphorib 100.0 7.8E-75 2.7E-79 539.3 27.2 275 1-275 65-342 (346)
4 2elc_A Trp D, anthranilate pho 100.0 2.3E-74 7.7E-79 532.2 29.7 268 1-273 59-328 (329)
5 3r88_A Anthranilate phosphorib 100.0 5.5E-73 1.9E-77 531.0 30.5 274 1-275 85-369 (377)
6 1o17_A Anthranilate PRT, anthr 100.0 3.9E-73 1.3E-77 526.7 28.1 270 1-274 62-332 (345)
7 3h5q_A PYNP, pyrimidine-nucleo 100.0 7.8E-51 2.7E-55 384.9 22.3 239 1-278 65-325 (436)
8 2dsj_A Pyrimidine-nucleoside ( 100.0 5.8E-50 2E-54 377.7 20.2 239 1-280 62-317 (423)
9 1brw_A PYNP, protein (pyrimidi 100.0 3.1E-49 1.1E-53 374.7 23.4 237 1-280 62-324 (433)
10 1uou_A Thymidine phosphorylase 100.0 1.4E-48 4.8E-53 372.9 24.1 235 1-278 89-350 (474)
11 2tpt_A Thymidine phosphorylase 100.0 2.3E-49 8E-54 376.2 14.6 246 1-278 63-326 (440)
12 4ex8_A ALNA; alpha/beta/alpha- 70.5 3.6 0.00012 36.7 4.0 123 17-149 105-261 (316)
13 4gim_A Pseudouridine-5'-phosph 64.9 12 0.00042 33.6 6.2 108 18-132 126-268 (335)
14 3ovg_A Amidohydrolase; structu 51.7 9.7 0.00033 34.7 3.4 77 13-92 152-240 (363)
15 1vkm_A Conserved hypothetical 47.1 16 0.00054 32.4 3.8 116 17-158 98-226 (297)
16 2l48_A N-acetylmuramoyl-L-alan 41.4 54 0.0018 23.4 5.2 37 126-162 19-55 (85)
17 3lw7_A Adenylate kinase relate 40.9 68 0.0023 24.1 6.5 27 15-47 4-30 (179)
18 1vli_A Spore coat polysacchari 39.2 1E+02 0.0036 28.2 8.2 143 17-162 32-197 (385)
19 3end_A Light-independent proto 38.8 13 0.00044 32.2 2.0 34 13-48 42-75 (307)
20 3cio_A ETK, tyrosine-protein k 37.3 26 0.00088 30.6 3.7 37 13-51 105-142 (299)
21 2woo_A ATPase GET3; tail-ancho 37.0 14 0.00047 32.8 1.9 29 17-47 24-52 (329)
22 1j3m_A The conserved hypotheti 36.1 30 0.001 26.1 3.5 62 70-150 12-73 (129)
23 3fwy_A Light-independent proto 36.1 15 0.00051 32.6 2.0 37 13-51 49-85 (314)
24 3bfv_A CAPA1, CAPB2, membrane 35.1 24 0.00083 30.3 3.1 36 13-50 83-119 (271)
25 1o51_A Hypothetical protein TM 35.0 59 0.002 24.4 4.9 29 135-163 28-57 (114)
26 3zq6_A Putative arsenical pump 34.0 16 0.00054 32.3 1.8 33 17-51 19-51 (324)
27 1ihu_A Arsenical pump-driving 33.4 17 0.00057 34.9 2.0 35 13-49 9-43 (589)
28 3iqw_A Tail-anchored protein t 33.3 24 0.00083 31.5 2.9 46 14-64 18-63 (334)
29 3ug7_A Arsenical pump-driving 33.0 17 0.00059 32.5 1.9 33 17-51 31-63 (349)
30 1byi_A Dethiobiotin synthase; 32.7 18 0.00061 29.4 1.8 30 16-47 5-35 (224)
31 3qgm_A P-nitrophenyl phosphata 32.4 32 0.0011 28.6 3.4 58 14-71 12-69 (268)
32 3epr_A Hydrolase, haloacid deh 32.3 23 0.00079 29.6 2.5 58 14-71 9-66 (264)
33 3kjh_A CO dehydrogenase/acetyl 32.3 11 0.00037 31.0 0.4 31 17-49 5-35 (254)
34 1cp2_A CP2, nitrogenase iron p 30.8 20 0.00069 30.1 1.8 30 17-48 6-35 (269)
35 3fkq_A NTRC-like two-domain pr 29.3 34 0.0012 30.7 3.2 37 13-51 144-181 (373)
36 2gdt_A Leader protein; P65 hom 28.8 28 0.00094 26.0 2.0 22 239-260 18-39 (116)
37 2woj_A ATPase GET3; tail-ancho 28.8 22 0.00075 32.0 1.8 34 17-52 23-58 (354)
38 1q9u_A Uncharacterized protein 27.7 72 0.0025 23.9 4.4 60 72-150 17-76 (130)
39 2afh_E Nitrogenase iron protei 27.5 24 0.00081 30.2 1.7 30 17-48 7-36 (289)
40 4a7p_A UDP-glucose dehydrogena 26.9 3.7E+02 0.013 24.7 11.4 136 14-166 10-165 (446)
41 3io3_A DEHA2D07832P; chaperone 26.7 39 0.0013 30.3 3.1 46 14-64 20-67 (348)
42 2dcl_A Hypothetical UPF0166 pr 26.3 73 0.0025 24.4 4.2 29 135-163 24-53 (127)
43 3tc3_A UV damage endonuclease; 25.2 30 0.001 30.8 2.0 101 50-159 38-163 (310)
44 3kc2_A Uncharacterized protein 24.7 57 0.002 29.2 3.8 58 14-71 17-75 (352)
45 4dzz_A Plasmid partitioning pr 24.4 29 0.00098 27.5 1.6 31 19-51 9-39 (206)
46 3gtx_A Organophosphorus hydrol 23.6 1.8E+02 0.0062 25.7 6.9 66 17-83 159-236 (339)
47 2wqp_A Polysialic acid capsule 23.4 1.6E+02 0.0055 26.5 6.5 142 17-162 23-186 (349)
48 2ho4_A Haloacid dehalogenase-l 23.3 1E+02 0.0035 24.9 4.9 58 14-71 11-68 (259)
49 2px0_A Flagellar biosynthesis 22.6 3.6E+02 0.012 23.0 8.8 83 12-98 105-197 (296)
50 1zjj_A Hypothetical protein PH 22.2 54 0.0018 27.2 3.0 57 14-70 5-61 (263)
51 3oz2_A Digeranylgeranylglycero 22.0 92 0.0032 26.9 4.6 42 30-71 15-62 (397)
52 3pnz_A Phosphotriesterase fami 21.9 1.4E+02 0.0047 26.5 5.7 75 14-92 152-238 (330)
53 2ej7_A HCG3 gene; HCG3 protein 21.8 60 0.002 22.2 2.7 29 56-84 5-33 (82)
54 2ph1_A Nucleotide-binding prot 21.7 34 0.0012 28.8 1.6 35 13-49 19-54 (262)
55 3q9l_A Septum site-determining 21.6 34 0.0012 28.3 1.6 29 19-49 10-38 (260)
56 2oze_A ORF delta'; para, walke 20.8 45 0.0015 28.4 2.2 33 13-47 35-70 (298)
57 3ezl_A Acetoacetyl-COA reducta 20.7 2.4E+02 0.0082 22.9 6.8 64 17-84 16-85 (256)
58 1j8m_F SRP54, signal recogniti 20.2 3.5E+02 0.012 23.2 8.0 80 13-96 99-193 (297)
59 3pdw_A Uncharacterized hydrola 20.1 47 0.0016 27.5 2.2 58 14-71 10-67 (266)
No 1
>1khd_A Anthranilate phosphoribosyltransferase; type 3 PRT fold, nucleotide binding fold; 1.86A {Pectobacterium carotovorum} SCOP: a.46.2.1 c.27.1.1 PDB: 1kgz_A
Probab=100.00 E-value=8.1e-75 Score=537.99 Aligned_cols=269 Identities=39% Similarity=0.666 Sum_probs=251.3
Q ss_pred CccccccccCC-CCcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCC-cccHHHHHHHcCCCCCCCHHHHH
Q 023546 1 MIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSS-ACGSADVLEALGVVIDLDPEGVR 78 (281)
Q Consensus 1 ~~~~~~~~~~~-~~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~-~~gs~dvLe~LGi~~~~s~~~a~ 78 (281)
|++++.+++.+ .+.+|+|||||||.+||||||++|+++|++|+||+|||||++++ ++||+|+||+||+++++++++++
T Consensus 72 m~~~~~~~~~~~~~~vD~~gTGGdg~~tfNiSt~~A~v~Aa~Gv~VakHGnr~~ss~~~GsaDvLeaLGv~~~~~~~~~~ 151 (345)
T 1khd_A 72 LLADAQPFPRPDYDFADIVGTGGDGTNSINISTASAFVAASCGAKVAKHGNRSVCQPLAGSCDLLQAFGIRLDMSAEDSR 151 (345)
T ss_dssp HHHTSCCCCCCSSCCEEEEECCCCSSCBCCCHHHHHHHHHHHTCCEEEEECC---------CHHHHHTTCCTTCCHHHHH
T ss_pred HHHhCCcCCCCCCCeeeecCCCCCCCCccchHHHHHHHHHhCCCcEEEeCCCCCCCCcccHHHHHHhCCCCCCCCHHHHH
Confidence 46777777653 35899999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHcCeEEEeCCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEe
Q 023546 79 RCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH 158 (281)
Q Consensus 79 ~~l~~~g~~fl~~~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~ 158 (281)
++|++.||+|+++|.|||+|++++++|++||+||+||+++||+||++++++|+|||||+|.++|+++++.+|.++++||+
T Consensus 152 ~~l~~~gi~fl~a~~~hPa~k~l~~~R~~Lg~rTvfn~lgpL~nPa~~~~~v~GV~~~~~~~~~a~~l~~lG~~~a~vv~ 231 (345)
T 1khd_A 152 QALDDLNVCFLFAPQYHTGFRHAMPVRQQLKTRTIFNVLGPLINPARPPKALIGVYSPELVLPIAQALKVLGYKNAAVVH 231 (345)
T ss_dssp HHHHHHSEEEEEHHHHCGGGGGGHHHHHHHCSCCTHHHHGGGCCTTCCSEEEEECSSGGGHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHCCEEEEehhhhCHHHHHHHHHHHHhCCCCHHHHHHHhcCCcCCCeEEEeecCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccCcCCceEEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCcc-hHHHHHHHHHHHHHH
Q 023546 159 SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERG-AIADALILNAAAALL 237 (281)
Q Consensus 159 GeG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~~~~~~~vl~G~~~-~~~~~v~~naa~~L~ 237 (281)
|||+||+|+.++|+|+++++|++++++++|++||++.++.+++.++++++++++++++|+|+.+ +++|+|++|||.+||
T Consensus 232 GdG~dEis~~~~t~v~~~~~g~i~~~~i~p~~~G~~~~~~~~l~~g~~~e~a~~~~~vL~G~~~~~~~d~v~~naa~~L~ 311 (345)
T 1khd_A 232 GGGMDEVAIHTPTQVAELNNGEIESYQLSPQDFGLQSYSLNALQGGTPEENRDILARLLQGKGDAAHARQVAANVALLLK 311 (345)
T ss_dssp ETTBSSCCSSSCEEEEEEETTEEEEEEECGGGGTCCCBCGGGGBCCSHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred CCCcceecCCCceEEEEEeCCEEEEEEECHHHcCCCcCCccccCCCCHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888889889999999999999999865 899999999999999
Q ss_pred HccCCCCHHHHHHHHHHHHHccHHHHHHHHHHH
Q 023546 238 VSCKVNTLAEGVALAREIQLSGKALNTLDLWIE 270 (281)
Q Consensus 238 ~~G~~~~~~eg~~~A~~~l~sG~a~~~l~~~~~ 270 (281)
++|+ +|++||+++|+++|+||+|+++|++|++
T Consensus 312 ~~g~-~~~~eg~~~A~~~i~sG~A~~~l~~~~~ 343 (345)
T 1khd_A 312 LFGQ-DNLRHNAQLALETIRSGTAFERVTALAA 343 (345)
T ss_dssp TTTC-CCHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred HcCC-CCHHHHHHHHHHHHHCCHHHHHHHHHHh
Confidence 9999 9999999999999999999999999985
No 2
>1vqu_A Anthranilate phosphoribosyltransferase 2; 17130499, structur genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI; 1.85A {Nostoc SP}
Probab=100.00 E-value=3.7e-74 Score=538.42 Aligned_cols=273 Identities=38% Similarity=0.565 Sum_probs=254.9
Q ss_pred Cccccccc--------cCC---CCcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCC
Q 023546 1 MIKYATKV--------EGL---GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVV 69 (281)
Q Consensus 1 ~~~~~~~~--------~~~---~~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~ 69 (281)
|++++.++ +.+ .+++|+|||||||.+||||||++|+++|++|+||+|||||++++++||+|+||+||++
T Consensus 86 m~~~~~~~~~~~~~~~~~~~~~~~~vD~~gTGGdg~~tfNiSt~~A~v~Aa~Gv~VaKHGnR~~ss~~GsaDvLEaLGv~ 165 (374)
T 1vqu_A 86 LQSQSKMGTGENYSQLPITNSPFSIIDTCGTGGDGSSTFNISTAVAFVAAAYGVPVAKHGNRSASSLTGSADVLEALGVN 165 (374)
T ss_dssp HHTTCCC-----------CCSSSCCEEEEECC---CCBCCHHHHHHHHHHHTTCCEEEEEECC--CTTCHHHHHHHTTCC
T ss_pred HHHhCCccccccccccCccccCCCeeEEeCCCCCCCCccchHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHhCCCC
Confidence 45666666 332 3589999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHcCeEEEeCCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHc
Q 023546 70 IDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRF 149 (281)
Q Consensus 70 ~~~s~~~a~~~l~~~g~~fl~~~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~l 149 (281)
+++++++++++|++.||+|+++|.|||+|++++++|++||+||+||++|||+||+++++||+|||||+|.++|+++++.+
T Consensus 166 ~~~~~e~~~~~l~~~gi~fl~a~~~hPa~k~l~~~R~~lg~rTvfNilgpL~NPa~~~~qv~GV~~~~~~~~~a~~l~~l 245 (374)
T 1vqu_A 166 LGASPEKVQAALQEVGITFLFAPGWHPALKAVATLRRTLRIRTVFNLLGPLVNPLRPTGQVVGLFTPKLLTTVAQALDNL 245 (374)
T ss_dssp TTCCHHHHHHHHHHTSEEEEEETTSSGGGGGGHHHHHHHCSCCHHHHHGGGCCTTCCSEEEEECSCGGGHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHCCEEEEEhHHhCHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCCCceEEeecCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEec-CCccccCcCCceEEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCcchHHH-H
Q 023546 150 GLKRALVVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIAD-A 227 (281)
Q Consensus 150 g~~~~lvv~G-eG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~~~~~~~vl~G~~~~~~~-~ 227 (281)
|.++++||+| +|+||+++.++|.|+++++|+++++.++|++||++..+++++.++++++++++++++|+|+.++++| +
T Consensus 246 G~~~alVv~G~~G~dE~s~~~~t~v~~~~~g~~~~~~i~p~d~Gl~~~~~~~l~~g~~~e~a~~~~~vL~G~~~~~~d~~ 325 (374)
T 1vqu_A 246 GKQKAIVLHGRERLDEAGLGDLTDLAVLSDGELQLTTINPQEVGVTPAPIGALRGGDVQENAEILKAVLQGKGTQAQQDA 325 (374)
T ss_dssp TCSEEEEEEETTTBSSCCSSSCEEEEEEETTEEEEEEECGGGGTCCCCCGGGGBCCSHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred CCCeEEEEECCCCccccccCCceEEEEEeCCEEEEEEECHHHCCCccccccccCCCCHHHHHHHHHHHHCCCCCchHHHH
Confidence 9999999999 9999999999999999999999999999999999888888888889999999999999999778899 9
Q ss_pred HHHHHHHHHHHccCCC--CHHHHHHHHHHHHHccHHHHHHHHHHHHhC
Q 023546 228 LILNAAAALLVSCKVN--TLAEGVALAREIQLSGKALNTLDLWIEVSK 273 (281)
Q Consensus 228 v~~naa~~L~~~G~~~--~~~eg~~~A~~~l~sG~a~~~l~~~~~~~~ 273 (281)
|++|||.+||++|+++ |++||+++|+++|+||+|+++|++|++.++
T Consensus 326 v~~naa~~L~~~g~~~~~~~~eg~~~A~~~i~sG~A~~~l~~~v~~~~ 373 (374)
T 1vqu_A 326 VALNAALALQVAGAVPLLDHAQGVSVAKEILQTGTAWAKLAQLVYFLG 373 (374)
T ss_dssp HHHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHhc
Confidence 9999999999999999 999999999999999999999999999875
No 3
>4hkm_A Anthranilate phosphoribosyltransferase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; HET: MSE CXS; 1.95A {Xanthomonas campestris PV}
Probab=100.00 E-value=7.8e-75 Score=539.33 Aligned_cols=275 Identities=43% Similarity=0.657 Sum_probs=242.2
Q ss_pred CccccccccCC--CCcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHH
Q 023546 1 MIKYATKVEGL--GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVR 78 (281)
Q Consensus 1 ~~~~~~~~~~~--~~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~~s~~~a~ 78 (281)
|++++.+++.+ .+.+|+|||||||.+||||||++|+++|++|+||+|||||++++++||+|+||+||+++++++++++
T Consensus 65 m~~~~~~v~~~~~~~~vD~~gTGGdg~~t~niSt~~a~v~Aa~G~~V~khG~r~~ss~~GsaD~LeaLG~~~~ls~~~~~ 144 (346)
T 4hkm_A 65 MREFSRRVEVTDRRHMVDIVGTGGDGSHTFNISTCAMFVAAAGGAKVAKHGNRSVSSKSGSADALEALGAVIELQPEQVA 144 (346)
T ss_dssp HHHHSCCCCCSCCTTEEEEECC------CCCHHHHHHHHHHHTTCEEEEEC---------CHHHHHTTTCCCCCCHHHHH
T ss_pred HHHhCCCCCCCCCccceeecCCCCCCccccCcHHHHHHHHHhcCCCeeecCCCCCCCCcCHHHHHHHcCCCcccCHHHHH
Confidence 46677777654 4579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCeEEEeCCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEe
Q 023546 79 RCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH 158 (281)
Q Consensus 79 ~~l~~~g~~fl~~~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~ 158 (281)
+++++.||+|+++|.|||+|++++++|++||+||+||+++||+||++++++|+|||||+|.++|+++++.+|.++++|||
T Consensus 145 ~~l~~~g~~fl~a~~~~Pa~k~l~~~R~~lg~rT~fn~lgpL~nPa~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~a~vv~ 224 (346)
T 4hkm_A 145 ASLAQTGIGFMYAPVHHPAMKVVAPVRREMGVRTIFNILGPLTNPAGSPNILMGVFHPDLVGIQARVLQELGAERALVVW 224 (346)
T ss_dssp HHHHHHSEEEECHHHHCGGGGGTHHHHHHHCSCCTHHHHGGGCCTTCCSEEEEECSSTHHHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHhcCcchhchhhhChhHHHHhhheeccCCCchhhhcccccCCCCCcceEeeccCHHHhHHHHHHHHHcCCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-CCccccCcCCceEEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCcchHHHHHHHHHHHHHH
Q 023546 159 S-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIADALILNAAAALL 237 (281)
Q Consensus 159 G-eG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~~~~~~~vl~G~~~~~~~~v~~naa~~L~ 237 (281)
| ||+||+++.++|.|+++++|++.++.++|+|||++..+.+++.+++++++++.++++|+|+.++++|+|++|||++||
T Consensus 225 g~~G~dEis~~~~t~v~~~~~g~i~~~~i~P~d~Gl~~~~~~~~~~g~~~e~a~~~~~vl~g~~~~~~d~v~lnaa~~L~ 304 (346)
T 4hkm_A 225 GRDGMDELSLGAGTLVGELRDGQVHEYEVHPEDFGIAMSASRNLKVADAAESRAMLLQVLDNVPGPALDIVALNAGAALY 304 (346)
T ss_dssp ETTTBSSCCSSSCEEEEEEETTEEEEEEECGGGGTCCCCC---------CCHHHHHHHHHTTCCSHHHHHHHHHHHHHHH
T ss_pred cCCCchhhhhccCceEEEEeCCceeEecCCHHHcCCccCcccccCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 9 999999999999999999999999999999999998888888888999999999999999999999999999999999
Q ss_pred HccCCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhCCC
Q 023546 238 VSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKGA 275 (281)
Q Consensus 238 ~~G~~~~~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~~ 275 (281)
++|+++|++||+++|+++|+||+|+++|++|++++++.
T Consensus 305 ~~g~a~sl~eg~~~A~~~l~sG~A~~~l~~~i~~s~~~ 342 (346)
T 4hkm_A 305 VAGVADSIADGIVRARQVLADGSARACLDAYVAFTQQA 342 (346)
T ss_dssp HTTSSSSHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HcCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998753
No 4
>2elc_A Trp D, anthranilate phosphoribosyltransferase; structural genomics, NPPSFA, national project O structural and functional analyses; 1.55A {Thermus thermophilus} SCOP: a.46.2.1 c.27.1.1 PDB: 1v8g_A
Probab=100.00 E-value=2.3e-74 Score=532.19 Aligned_cols=268 Identities=46% Similarity=0.735 Sum_probs=256.6
Q ss_pred CccccccccCC-CCcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHH
Q 023546 1 MIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR 79 (281)
Q Consensus 1 ~~~~~~~~~~~-~~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~~s~~~a~~ 79 (281)
|++++.+++.+ .+++|+|||||||.+||||||++|+++|++|+||+|||||++++++||+|+||+||++++++++++++
T Consensus 59 m~~~~~~~~~~~~~~vD~~gTGGdg~~tfNiSt~~a~v~Aa~Gv~V~kHGnr~~ss~~GsaDvLeaLG~~~~~~~~~~~~ 138 (329)
T 2elc_A 59 MREAARPLRVHRRPLLDIVGTGGDGKGLMNLSTLAALVAAAGGVAVAKHGNRAASSRAGSADLLEALGVDLEAPPERVGE 138 (329)
T ss_dssp HHHHSCCCCCCCSSEEEEEECCCCSSCCCCCHHHHHHHHHHTTCEEEEEECCCTTTTCSHHHHHHHTTCCTTCCHHHHHH
T ss_pred HHHhCCCCCCCCCCeeEEcCCCCCCCCccccHHHHHHHHHhCCCCEEEeCCCCCCCcccHHHHHHhCCCCCCCCHHHHHH
Confidence 46677777654 45899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCeEEEeCCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEec
Q 023546 80 CVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS 159 (281)
Q Consensus 80 ~l~~~g~~fl~~~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~G 159 (281)
++++.||+|+++|.|||+|++++++|++||+||+||++|||+||+++++||+|||||.|.++|+++++.+| ++++||||
T Consensus 139 ~l~~~g~~fl~a~~~hPa~k~~~~~R~~lg~rTvfn~lgpL~nPa~~~~~v~Gv~~~~~~~~~a~~l~~lG-~~alVv~G 217 (329)
T 2elc_A 139 AIEELGFGFLFARVFHPAMRHVAPVRAELGVRTVFNLLGPLTNPAGADAYVLGVFSPEWLAPMAEALERLG-ARGLVVHG 217 (329)
T ss_dssp HHHHHSEEEEEHHHHCGGGGGTHHHHHHHCSCCHHHHHTTTCCTTCCCEEEEECSSGGGHHHHHHHHHHTT-CEEEEEEE
T ss_pred HHHHCCEEEEEhHHhCHHHHHHHHHHHHhCCCCHHHHHHHhcCccCCceeEEeeeCHHHHHHHHHHHHHcC-CCEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCccccCcCCceEEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCc-chHHHHHHHHHHHHHHH
Q 023546 160 EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GAIADALILNAAAALLV 238 (281)
Q Consensus 160 eG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~~~~~~~vl~G~~-~~~~~~v~~naa~~L~~ 238 (281)
+|+||++ .++|+|+++++|+ +.++|++||++..++++++++++++++++++++|+|+. ++++|+|++|||.+||+
T Consensus 218 ~G~dE~~-~~~t~v~~~~~g~---~~i~p~~~G~~~~~~~~l~~g~~~e~a~~~~~vL~G~~~~~~~d~v~~naa~~L~~ 293 (329)
T 2elc_A 218 EGADELV-LGENRVVEVGKGA---YALTPEEVGLKRAPLEALKGGGPEENAALARRLLKGEEKGPLADAVALAAGAGFYA 293 (329)
T ss_dssp TTBSSCC-SSCEEEEETTTEE---EEECGGGGTCCCCCGGGGCCCSHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHH
T ss_pred CChhhhc-cCCeEEEEEECCE---EEECHHHcCCccCCcccCCCCCHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHH
Confidence 9999999 9999999988776 88999999999888888888999999999999999986 78899999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhC
Q 023546 239 SCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSK 273 (281)
Q Consensus 239 ~G~~~~~~eg~~~A~~~l~sG~a~~~l~~~~~~~~ 273 (281)
+|+++|++||+++|+++|+||+|+++|++|++.++
T Consensus 294 ~g~~~~~~~g~~~A~~~i~sG~A~~~l~~~~~~~~ 328 (329)
T 2elc_A 294 AGKTPSLKEGVALAREVLASGEAYLLLERYVAFLR 328 (329)
T ss_dssp TTSSSSHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999875
No 5
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=100.00 E-value=5.5e-73 Score=531.02 Aligned_cols=274 Identities=40% Similarity=0.655 Sum_probs=261.3
Q ss_pred CccccccccCC---CCcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHH
Q 023546 1 MIKYATKVEGL---GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGV 77 (281)
Q Consensus 1 ~~~~~~~~~~~---~~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~~s~~~a 77 (281)
|++++.+++.. .+.+|+|||||||.+||||||++|+++|++|+||+|||||++++++||+|+||+||++++++++++
T Consensus 85 m~~~~~~v~~~~~~~~~vD~~gTGGdg~~T~niSt~~A~v~Aa~Gv~VaKHGnR~~ss~~GsaDvLEaLGv~~~l~~e~~ 164 (377)
T 3r88_A 85 MLSHAHPLPADTVPDDAVDVVGTGGDGVNTVNLSTMAAIVVAAAGVPVVKHGNRAASSLSGGADTLEALGVRIDLGPDLV 164 (377)
T ss_dssp HHHHSCCCCTTCSCTTCEEEEECCCCSCCBCCHHHHHHHHHHHTTCCEEEEECCCSSSSCCHHHHHHHTTCCCCCCHHHH
T ss_pred HHHhCCcCCCccCCCCCeEEeCCCCCCcCccccHHHHHHHHHhcCCeEEeECCCCCCCcccHHHHHHHcCCCcccchHHH
Confidence 46677777653 468999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCeEEEeCCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEE
Q 023546 78 RRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVV 157 (281)
Q Consensus 78 ~~~l~~~g~~fl~~~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv 157 (281)
++++++.||+|+++|.|||+|++++++|++||+||+||+++||+||++++++|+|||||+|.++|+++++.+| ++++||
T Consensus 165 ~~~l~~~gi~fl~a~~~hPa~k~l~~vR~~Lg~rTifN~lgpL~NPa~~~~~liGv~~~~l~~~~a~~l~~~~-~~a~vv 243 (377)
T 3r88_A 165 ARSLAEVGIGFCFAPRFHPSYRHAAAVRREIGVPTVFNLLGPLTNPARPRAGLIGCAFADLAEVMAGVFAARR-SSVLVV 243 (377)
T ss_dssp HHHHHHHSEEEEEHHHHCGGGHHHHHHHHHHCSCCGGGGHHHHCCTTCCSEEEEECSCTTTHHHHHHHHHHTT-CEEEEE
T ss_pred HHHHHHhccccccchhhCHHHHHHHHHHHHhccCchhhhHHHhcCcccccccccCCCCHHHhHHHHHHHHhcC-CeeEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 599999
Q ss_pred ec-CCccccCcCCceEEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCcchHHHHHHHHHHHHH
Q 023546 158 HS-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIADALILNAAAAL 236 (281)
Q Consensus 158 ~G-eG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~~~~~~~vl~G~~~~~~~~v~~naa~~L 236 (281)
+| ||+||+++.++|+|+++++|+++++.++|+|||++..+++++.++++++|++++++||+|+.++++|+|++|+|.+|
T Consensus 244 ~G~dGlDEis~~~~t~v~~~~~g~i~~~~i~P~d~Gl~~~~~~~l~gg~~~ena~~~~~vL~G~~~~~~d~v~lNaa~~l 323 (377)
T 3r88_A 244 HGDDGLDELTTTTTSTIWRVAAGSVDKLTFDPAGFGFARAQLDQLAGGDAQANAAAVRAVLGGARGPVRDAVVLNAAGAI 323 (377)
T ss_dssp EETTSCSSCCSSSCEEEEEEETTEEEEEEECGGGGTCCCCCGGGGBCCSHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHH
T ss_pred cCCCCCceeecccccceEEEeeceeEEEeccccccCCCcCCHHhccCCCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHH
Confidence 99 99999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred HHccCC-------CCHHHHHHHHHHHHHccHHHHHHHHHHHHhCCC
Q 023546 237 LVSCKV-------NTLAEGVALAREIQLSGKALNTLDLWIEVSKGA 275 (281)
Q Consensus 237 ~~~G~~-------~~~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~~ 275 (281)
|+.|.. +|++||+++|+++|+||+|++||++|++++++-
T Consensus 324 ~~~g~~~~~~~~~~sl~eG~~~A~e~l~sG~A~~kl~~~i~~s~~~ 369 (377)
T 3r88_A 324 VAHAGLSSRAEWLPAWEEGLRRASAAIDTGAAEQLLARWVRFGRQI 369 (377)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHTC
T ss_pred HHhcCccccccccCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 987653 379999999999999999999999999999864
No 6
>1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD; nucleoside-phosphorylases; 2.05A {Sulfolobus solfataricus} SCOP: a.46.2.1 c.27.1.1 PDB: 1gxb_A 1zxy_A* 1zyk_A* 2gvq_A* 3gbr_A*
Probab=100.00 E-value=3.9e-73 Score=526.69 Aligned_cols=270 Identities=34% Similarity=0.552 Sum_probs=256.6
Q ss_pred CccccccccCCCCcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHHH
Q 023546 1 MIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRC 80 (281)
Q Consensus 1 ~~~~~~~~~~~~~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~~s~~~a~~~ 80 (281)
|++++.+++.+ +.+|+|||||||.+||||||++|+++|++ +||+|||||++++++||+|+||+||+++++++++++++
T Consensus 62 m~~~~~~~~~~-~~vD~~gTGGdg~~tfNiSt~~A~v~Aa~-v~VaKHGnR~~ss~~GsaDvLEaLGv~~~~~~e~~~~~ 139 (345)
T 1o17_A 62 MRELAIKIDVP-NAIDTAGTGGDGLGTVNVSTASAILLSLV-NPVAKHGNRAVSGKSGSADVLEALGYNIIVPPERAKEL 139 (345)
T ss_dssp HHHHSCCCCCT-TCEECCC----CCCBCCHHHHHHHHHTTT-SCEEEEECCCSSSSCSHHHHHHHHTBCCCCCHHHHHHH
T ss_pred HHHhCCCCCCC-CceeeCCCCCCCCCccchHHHHHHHHHHc-CCEEEECCCCCCCcccHHHHHHhCCCCCCCCHHHHHHH
Confidence 46677776654 68999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHcCeEEEeCCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEec-
Q 023546 81 VDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS- 159 (281)
Q Consensus 81 l~~~g~~fl~~~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~G- 159 (281)
+++.||+|+++|.|||+|++++++|++||+||+||++|||+||+++++||+|||||.|.++++++++.+|.++++||+|
T Consensus 140 l~~~gi~fl~a~~~hPa~k~l~~~R~~lg~rTvfN~lgpL~nPa~~~~ql~Gv~~~~~~~~~A~~l~~lG~~~alVv~G~ 219 (345)
T 1o17_A 140 VNKTNFVFLFAQYYHPAMKNVANVRKTLGIRTIFNILGPLTNPANAKYQLMGVFSKDHLDLLSKSAYELDFNKIILVYGE 219 (345)
T ss_dssp HHHHSEEEEEHHHHCGGGGGTHHHHHHHCSCCGGGGCGGGCCTTCCSEEEEECSSHHHHHHHHHHHTTSCCSEEEEEEET
T ss_pred HHHcCEEEEehHHhChHHHHHHHHHHHhCCCCHHHHHHHhcCccCCCeEEEEeeCHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCcCCceEEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHHc
Q 023546 160 EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIADALILNAAAALLVS 239 (281)
Q Consensus 160 eG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~~~~~~~vl~G~~~~~~~~v~~naa~~L~~~ 239 (281)
+|+||+++.++|.|+++++|+++++.++|+|||++..+++++.++++++++++++++|+|+.++++|+|++|||.+||++
T Consensus 220 ~G~dE~s~~~~t~v~~~~~g~~~~~~i~p~d~Gl~~~~~~~l~~g~~~e~a~~~~~vL~G~~~~~~d~v~~naa~~L~~~ 299 (345)
T 1o17_A 220 PGIDEVSPIGNTFMKIVSKRGIEEVKLNVTDFGISPIPIEKLIVNSAEDSAIKIVRAFLGKDEHVAEFIKINTAVALFAL 299 (345)
T ss_dssp TTBSSCCSSSEEEEEEEETTEEEEEEEEGGGGTCCCCCGGGTBCSSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHhcccCCcEEEEEeCCeEEEEEEChhhcCCCCCChhccCCCCHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999888888888999999999999999987789999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhCC
Q 023546 240 CKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKG 274 (281)
Q Consensus 240 G~~~~~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~ 274 (281)
|+++|++||+++|+++|+ +|+++|++|++.+++
T Consensus 300 g~~~~~~eg~~~A~~~i~--~A~~~l~~~~~~~~~ 332 (345)
T 1o17_A 300 DRVGDFREGYEYADHLIE--KSLDKLNEIISMNGD 332 (345)
T ss_dssp TSSSSHHHHHHHHHHHHT--THHHHHHHHHHHSBC
T ss_pred CCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHhCC
Confidence 999999999999999999 999999999999875
No 7
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=100.00 E-value=7.8e-51 Score=384.94 Aligned_cols=239 Identities=26% Similarity=0.310 Sum_probs=219.7
Q ss_pred CccccccccCC---CCcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHc-CCCCCCCHHH
Q 023546 1 MIKYATKVEGL---GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDPEG 76 (281)
Q Consensus 1 ~~~~~~~~~~~---~~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~L-Gi~~~~s~~~ 76 (281)
|++++.+++.. .+.+|+|||||||.+| ||++|+++|++|+||+|||||++++++||+|+||+| |+++++++++
T Consensus 65 m~~~~~~~~~~~~~~~~vD~~gTGGdG~~t---St~~A~vvAa~Gv~VaKHGnRa~ss~~GsaDvLEaLpGi~~~ls~e~ 141 (436)
T 3h5q_A 65 MVNSGDMIDLSDIKGVKVDKHSTGGVGDTT---TLVLAPLVAAVDVPVAKMSGRGLGHTGGTIDKLEAIDGFHVEIDEAT 141 (436)
T ss_dssp HHTTSCCCCCTTSCSCCEEEEECCCTTCCH---HHHHHHHHHHTTCCEEEECCCCSSSSCCHHHHHTTSTTCCCCCCHHH
T ss_pred HHHhCCcCCccccCCCceeecCCCCCCCCh---HHHHHHHHHhCCCCEEeECCCCCCCcccHHHHHHhCcCCCCCCCHHH
Confidence 45666666553 3689999999999986 999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHcCeEEEe-CCccChhhhchHHHHhhhCCCChhhhhhhccC--------CCCCCceEEeee--------ChhhH
Q 023546 77 VRRCVDEAGIGFMM-STKYHPAMKFVRPVRKKLKVKTVFNILGPMLN--------PACVPFAVVGVY--------NENLV 139 (281)
Q Consensus 77 a~~~l~~~g~~fl~-~~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlN--------P~~~~~~v~Gv~--------h~~~~ 139 (281)
+.++|++.||+|++ ++.|||++++++++|++ +||+||+ ||+| |+++.++|+||| +++..
T Consensus 142 ~~~~l~~~g~~fl~~a~~~~Pa~~~l~~lR~~--~~Tvfni--PLinaSimSKKlpag~~~~vlgV~~G~gaf~~~~~~a 217 (436)
T 3h5q_A 142 FVKLVNENKVAVVGQSGNLTPADKKLYALRDV--TGTVNSI--PLIASSIMSKKIAAGADAIVLDVKTGSGAFMKTLEDA 217 (436)
T ss_dssp HHHHHHHHSEEEECCCSSSCHHHHHHHHHHHT--TTCSSCH--HHHHHHHHHHHHHTTCSEEEEEEEESTTSSBCSHHHH
T ss_pred HHHHHHHcCCEEEccccccCHHHHHHHHHHhc--cCCcCCh--hhhccchhccccccCCCeEEEeeecCccccCCCHHHH
Confidence 99999999999998 69999999999999999 7999999 9999 999999999999 99999
Q ss_pred HHHHHHHHHcCCCeEEEEecCCccccCcCCceEEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCC
Q 023546 140 LKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSG 219 (281)
Q Consensus 140 ~~~~~~~~~lg~~~~lvv~GeG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~~~~~~~vl~G 219 (281)
+.+++++..+|.+. ++|.+++++++. +| ||+. ++++.++++ ++++|+|
T Consensus 218 ~~lA~~l~~lG~~~---------------G~~~v~~lt~~~------~P--lG~~--------~G~~~E~ae-~~~vL~G 265 (436)
T 3h5q_A 218 EALAHAMVRIGNNV---------------GRNTMAIISDMN------QP--LGRA--------IGNALELQE-AIDTLKG 265 (436)
T ss_dssp HHHHHHHHHHHHHH---------------TCCEEEEEEECS------SC--SSSE--------EESHHHHHH-HHHHHTT
T ss_pred HHHHHHHHHhhhhc---------------CCeEEEEEcCCC------CC--CCCC--------CCCHHHHHH-HHHHHCC
Confidence 99999999998642 678888888776 45 7763 568899999 9999999
Q ss_pred Cc-chHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhCCCCCC
Q 023546 220 ER-GAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKGAPAF 278 (281)
Q Consensus 220 ~~-~~~~~~v~~naa~~L~~~G~~~~~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~~~~~ 278 (281)
+. .+++|.|++|||.+||++|++++++||+++|+++|+||+|+++|++|++.|++++.+
T Consensus 266 ~~~~~~~d~vl~nAa~~L~~ag~a~~~~eg~~~A~~~i~sG~A~~~l~~~v~~qGg~~~~ 325 (436)
T 3h5q_A 266 QGPKDLTELVLTLGSQMVVLANKAETLEEARALLIEAINSGAALEKFKTFIKNQGGDETV 325 (436)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTTSCSSHHHHHHHHHHHHHTSHHHHHHHHHHHHTTCCTHH
T ss_pred CCCccHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhCcHHHHHHHHHHHHhCCCchh
Confidence 84 689999999999999999999999999999999999999999999999999998753
No 8
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=100.00 E-value=5.8e-50 Score=377.72 Aligned_cols=239 Identities=22% Similarity=0.256 Sum_probs=213.3
Q ss_pred CccccccccCCC--CcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHc-CCCCCCCHHHH
Q 023546 1 MIKYATKVEGLG--DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDPEGV 77 (281)
Q Consensus 1 ~~~~~~~~~~~~--~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~L-Gi~~~~s~~~a 77 (281)
|++++.+++.+. ..+|+|||||||. ||||++|+++|++|+||+|||||++++++||+|+||+| |++++++++++
T Consensus 62 M~~~~~~l~~~~~~~~vD~~gTGGdG~---niSt~~a~vvAa~Gv~VaKhGnR~~ss~~GsaDvLEaL~Gv~i~l~~e~~ 138 (423)
T 2dsj_A 62 MARSGKVLDLSGLPHPVDKHSSGGVGD---KVSLVVGPILAASGCTFAKMSGRGLAHTGGTIDKLESVPGWRGEMTEAEF 138 (423)
T ss_dssp HHTSSBCCCCTTSSSBEEEEEESSSCC---STHHHHHHHHHTTTCBEEEECCCCBTTBCCHHHHHTTSTTCCCCCCHHHH
T ss_pred HHHhCCcCCccccCCceeEecCCCCCc---cHHHHHHHHHHhCCCcEEEECCCCCCCCccHHHHHHhCCCCCCCCCHHHH
Confidence 566777776532 2899999999998 79999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHcCeEEEeC-CccChhhhchHHHHhhhC-CCChhhhhhhccC---CCCCCceEE------eee--ChhhHHHHHH
Q 023546 78 RRCVDEAGIGFMMS-TKYHPAMKFVRPVRKKLK-VKTVFNILGPMLN---PACVPFAVV------GVY--NENLVLKMAN 144 (281)
Q Consensus 78 ~~~l~~~g~~fl~~-~~~~P~l~~l~~lR~~lg-~Rt~~ntl~~LlN---P~~~~~~v~------Gv~--h~~~~~~~~~ 144 (281)
.+++++.||+|+++ +.|||++++++++|+++| +||+||+++||+| |+++.++|+ |+| ++++.+.+++
T Consensus 139 ~~~l~~~Gi~f~~~~~~~~PA~k~l~~lR~~lgtv~Ti~nilgpl~nkK~pag~~~~vldV~~G~Gaf~~~~~~~~~lA~ 218 (423)
T 2dsj_A 139 LERARRVGLVIAAQSPDLAPLDGKLYALRDVTATVESVPLIASSIMSKKLAAGARSIVLDVKVGRGAFMKTLEEARLLAK 218 (423)
T ss_dssp HHHHHHTSEEEESCGGGBSHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTCSEEEEEEEESSSTTCBCHHHHHHHHH
T ss_pred HHHHHHcCEEEEecccccChHHHHHHHHHHHhcccCcHHHhHHHHhcCccCCCCCeEEEEeccCCCcccCCHHHHHHHHH
Confidence 99999999999888 899999999999999999 8999999999999 999999999 779 9999999999
Q ss_pred HHHHcCCCeEEEEecCCccccCcCCceEEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCc-ch
Q 023546 145 ALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GA 223 (281)
Q Consensus 145 ~~~~lg~~~~lvv~GeG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~~~~~~~vl~G~~-~~ 223 (281)
++..+|.+ .+.+.++++++++ +++|+ .+++++++++.++ +|+|+. .+
T Consensus 219 ~l~~lg~~---------------~G~~~v~~l~dg~--------~plg~--------~~G~a~E~ae~i~-vL~G~g~~~ 266 (423)
T 2dsj_A 219 TMVAIGQG---------------AGRRVRALLTSME--------APLGR--------AVGNAIEVREAIE-ALKGEGPGD 266 (423)
T ss_dssp HHHHHHHH---------------TTCEEEEEEEECS--------SCSSS--------EEESHHHHHHHHH-HHTTCSCHH
T ss_pred HHHHHHHH---------------cCCeEEEEEcCCC--------Ccccc--------cCCCHHHHHHHHH-HHCCCCchh
Confidence 99998852 2467777777665 23443 3478999999885 999984 46
Q ss_pred HHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhCCCCCCcC
Q 023546 224 IADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKGAPAFAC 280 (281)
Q Consensus 224 ~~~~v~~naa~~L~~~G~~~~~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~~~~~~~ 280 (281)
++|.|++|||.+||++|+ |+ ++|+++|+||+|+++|++|++.+++|+.|.+
T Consensus 267 ~~d~vl~nAa~~L~~ag~--~l----~~A~~~l~sG~A~~kl~~li~~~~g~~~~~~ 317 (423)
T 2dsj_A 267 LLEVALALAEEALRLEGL--DP----ALARKALEGGAALEKFRAFLEAQGGDPRAVE 317 (423)
T ss_dssp HHHHHHHHHHHHHHHTTC--CT----HHHHHHHHTSHHHHHHHHHHHHTTCCGGGGT
T ss_pred HHHHHHHHHHHHHHHcCC--CH----HHHHHHHhcCcHHHHHHHHHHHhCCChhhhc
Confidence 899999999999999998 55 8999999999999999999999999987743
No 9
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=100.00 E-value=3.1e-49 Score=374.73 Aligned_cols=237 Identities=23% Similarity=0.314 Sum_probs=212.2
Q ss_pred CccccccccCC---CCcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHc-CCCCCCCHHH
Q 023546 1 MIKYATKVEGL---GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDPEG 76 (281)
Q Consensus 1 ~~~~~~~~~~~---~~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~L-Gi~~~~s~~~ 76 (281)
|++++.+++.+ .+.+|+|||||||.+ |||++|+++|++|+||+|||||++++++||+|+||+| |+++++++++
T Consensus 62 M~~~~~~v~~~~~~~~~vD~~gTGGdG~~---iSt~~A~vvAa~Gv~VaKHGnRa~ss~~GsaDvLEaL~Gv~i~ls~e~ 138 (433)
T 1brw_A 62 MVQSGEMLDLSSIRGVKVDKHSTGGVGDT---TTLVLGPLVASVGVPVAKMSGRGLGHTGGTIDKLESVPGFHVEISKDE 138 (433)
T ss_dssp HHHTSCCCCCTTSCSCCEEEEECCCSSCC---HHHHHHHHHHTTTCCEEEEECCCBTTBCCHHHHHTTSTTCCCCCCHHH
T ss_pred HHHhCCcCCcccccCCceeeCCCCCCCcc---hHHHHHHHHHhCCCcEEEECCCCCCCCCCHHHHHHHCcCceecCCHHH
Confidence 46667776653 258999999999996 8999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHcCeEEEeC-CccChhhhchHHHHhhhCCCChhhhhhhccCC--------CCCCceEEee------e------C
Q 023546 77 VRRCVDEAGIGFMMS-TKYHPAMKFVRPVRKKLKVKTVFNILGPMLNP--------ACVPFAVVGV------Y------N 135 (281)
Q Consensus 77 a~~~l~~~g~~fl~~-~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP--------~~~~~~v~Gv------~------h 135 (281)
+.+++++.||+|+++ +.|||+|++++++|+++ ||+||+ ||+|| .+++++|+|| | |
T Consensus 139 ~~~~l~~~Gi~fl~a~~~~hPA~k~l~~lR~~l--rTvfNi--PLin~s~lskklA~G~~~~VlgVk~G~gaf~~~~de~ 214 (433)
T 1brw_A 139 FIRLVNENGIAIIGQTGDLTPADKKLYALRDVT--ATVNSI--PLIASSIMSKKIAAGADAIVLDVKTGAGAFMKKLDEA 214 (433)
T ss_dssp HHHHHHHHSEEEEECCTTSCHHHHHHHHHHHHH--TCCCCH--HHHHHHHHHHHHHHCCSEEEEEEEESTTSSCCSHHHH
T ss_pred HHHHHHHcCeeEecCchhhCHHHHHHHHHHHhh--CCccCh--hhcCcHhhHHHHhcCCCEEEEEeecccccccCCHHHH
Confidence 999999999999999 59999999999999999 899999 99999 6788999999 8 8
Q ss_pred hhhHHHHHHHHHHcCCCeEEEEecCCccccCcCCceEEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 023546 136 ENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRR 215 (281)
Q Consensus 136 ~~~~~~~~~~~~~lg~~~~lvv~GeG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~~~~~~~ 215 (281)
+.+.+.|.++++.+|..+..++++ ++ +++|. .++++.++++. ++
T Consensus 215 ~~l~~~~v~~~~~~G~~~~~~i~~--~~-------------------------~plg~--------~~G~a~E~a~~-~~ 258 (433)
T 1brw_A 215 RRLARVMVDIGKRVGRRTMAVISD--MS-------------------------QPLGY--------AVGNALEVKEA-IE 258 (433)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEE--CS-------------------------SCSSS--------EESSHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHcCCEEEEEEcC--CC-------------------------Ccccc--------cCCCHHHHHHH-HH
Confidence 999999999999999877777773 11 22332 14678899865 99
Q ss_pred HHCCCc-chHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhCCCCCCcC
Q 023546 216 VLSGER-GAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKGAPAFAC 280 (281)
Q Consensus 216 vl~G~~-~~~~~~v~~naa~~L~~~G~~~~~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~~~~~~~ 280 (281)
+|+|+. .+++|.|++|||.+||+.|+++|++||+++|+++|+||+|+++|++|++.+++|+.+.+
T Consensus 259 vL~G~g~~~~~d~vl~nAa~~L~~~g~a~~~~eg~~~A~~~i~sG~A~~kl~~~i~~~~g~~~~~~ 324 (433)
T 1brw_A 259 TLKGNGPHDLTELCLTLGSHMVYLAEKAPSLDEARRLLEEAIRSGAAIAAFKTFLAAQGGDASVVD 324 (433)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHTTSSSSHHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCGGGTT
T ss_pred HHCCCCChhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcChHHHHHHHHHHHhCCChhHhh
Confidence 999985 45789999999999999999999999999999999999999999999999999987643
No 10
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=100.00 E-value=1.4e-48 Score=372.90 Aligned_cols=235 Identities=23% Similarity=0.287 Sum_probs=212.2
Q ss_pred CccccccccCCC----CcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHc-CCCCCCCHH
Q 023546 1 MIKYATKVEGLG----DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDPE 75 (281)
Q Consensus 1 ~~~~~~~~~~~~----~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~L-Gi~~~~s~~ 75 (281)
|++++.+++.+. +.+|+|||||||.+ |||++|+++|++|+||+|||||++++++||+|+||+| |++++++++
T Consensus 89 Mr~~~~~v~~~~~~~~~~vD~~gTGGdG~~---iSt~~A~vvAa~Gv~VaKHGnRa~ss~~GSaDvLEaLpGv~i~ls~e 165 (474)
T 1uou_A 89 LAQSGQQLEWPEAWRQQLVDKHSTGGVGDK---VSLVLAPALAACGCKVPMISGRGLGHTGGTLDKLESIPGFNVIQSPE 165 (474)
T ss_dssp HHTTSCCCCCCGGGGGGBEEEEESCCTTCC---HHHHHHHHHHTTTCBEEEECCCCBTTBCCHHHHHTTSTTCCCCCCHH
T ss_pred HHHhCCcCCcccccCCCeeEeCCCCCCCce---eHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHhCCCCCCCCCHH
Confidence 566777776532 58999999999997 8999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHcCeEEEeC-CccChhhhchHHHHhhhCCCChhhhhhhccCC--------CCCCceEEee------e------
Q 023546 76 GVRRCVDEAGIGFMMS-TKYHPAMKFVRPVRKKLKVKTVFNILGPMLNP--------ACVPFAVVGV------Y------ 134 (281)
Q Consensus 76 ~a~~~l~~~g~~fl~~-~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP--------~~~~~~v~Gv------~------ 134 (281)
++.+++++.||+|+++ +.|||+|++++++|++ +||+||+ ||+|| .+..++|+|| |
T Consensus 166 ~~~~~l~~~Gi~fl~a~~~~hPA~k~l~~lR~~--lrTvfNi--PLinpsi~skklA~g~~~~VlgVk~G~gafm~~lde 241 (474)
T 1uou_A 166 QMQVLLDQAGCCIVGQSEQLVPADGILYAARDV--TATVDSL--PLITASILSKKLVEGLSALVVDVKFGGAAVFPNQEQ 241 (474)
T ss_dssp HHHHHHHHHSEEEECCCSSSSHHHHHHHHHHHH--TTCSSCH--HHHHHHHHHHHHHTTCSEEEEEEEEC--CCCCSHHH
T ss_pred HHHHHHHHcCeEEecCchhhCHHHHHHHHHHhh--hCCccch--hhcCcHHHHHHHhhcCCeEEEEeccccccccCCHHH
Confidence 9999999999999999 6999999999999999 4999999 99999 7888999999 8
Q ss_pred ChhhHHHHHHHHHHcCCCeEEEEecCCccccCcCCceEEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHH
Q 023546 135 NENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLR 214 (281)
Q Consensus 135 h~~~~~~~~~~~~~lg~~~~lvv~GeG~dE~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~~~~~~ 214 (281)
|+.+.+.|.+.++.+|.++.++|++ ++ +++|. .++++.++++. .
T Consensus 242 ~~~la~~~v~~~~~~G~~~~~vitd--~~-------------------------~plg~--------~~G~a~E~ae~-~ 285 (474)
T 1uou_A 242 ARELAKTLVGVGASLGLRVAAALTA--MD-------------------------KPLGR--------CVGHALEVEEA-L 285 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEE--CS-------------------------SCSTT--------EESSHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEec--CC-------------------------Ccccc--------cCCCHHHHHHH-H
Confidence 8999999999999999998888884 22 12332 14688999975 4
Q ss_pred HHHCCCc-chHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhCCCCCC
Q 023546 215 RVLSGER-GAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKGAPAF 278 (281)
Q Consensus 215 ~vl~G~~-~~~~~~v~~naa~~L~~~G~~~~~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~~~~~ 278 (281)
++|+|+. .+++|+|++|||.+||++|+++|++||+++|+++|+||+|+++|++|++.+++|+.+
T Consensus 286 ~vL~G~g~~~~~d~vl~nAa~~L~~aG~a~~~~eg~~~A~e~i~sG~A~~kl~~li~~~~g~~~~ 350 (474)
T 1uou_A 286 LCMDGAGPPDLRDLVTTLGGALLWLSGHAGTQAQGAARVAAALDDGSALGRFERMLAAQGVDPGL 350 (474)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHSSHHHHHHHHHHHHTTCCHHH
T ss_pred HHHCCCCchhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcChHHHHHHHHHHHhCCCchh
Confidence 9999985 678999999999999999999999999999999999999999999999999998765
No 11
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=100.00 E-value=2.3e-49 Score=376.25 Aligned_cols=246 Identities=24% Similarity=0.270 Sum_probs=197.3
Q ss_pred CccccccccCCC-----CcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHc-CCCCCCCH
Q 023546 1 MIKYATKVEGLG-----DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDP 74 (281)
Q Consensus 1 ~~~~~~~~~~~~-----~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~L-Gi~~~~s~ 74 (281)
|++++.+++.+. +++|+|||||||.+ |||++|+++|++|+||+|||||++++++||+|+||+| |+++++++
T Consensus 63 m~~~~~~~~~~~~~~~~~~vD~~gTGGdG~~---iSt~~A~vvAa~Gv~VaKHGnR~~ss~~GsaDvLEaL~Gv~~~ls~ 139 (440)
T 2tpt_A 63 MRDSGTVLDWKSLHLNGPIVDKHSTGGVGDV---TSLMLGPMVAACGGYIPMISGRGLGHTGGTLDKLESIPGFDIFPDD 139 (440)
T ss_dssp HHHTSBCCCCTTTTCSSCBEEEEECCCSSCC---HHHHHHHHHHHTTCBEEEEECCCCTTSCCHHHHHTTSTTCCSCCCH
T ss_pred HHHhCCcCCCcccccCCCeeeeCCCCCCCcc---HHHHHHHHHHhCCCcEEEECCCCCCCcccHHHHHHhCcCCCCCCCH
Confidence 456666666533 58999999999997 8999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHcCeEEEeC-CccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCe
Q 023546 75 EGVRRCVDEAGIGFMMS-TKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKR 153 (281)
Q Consensus 75 ~~a~~~l~~~g~~fl~~-~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~ 153 (281)
+++.+++++.||+|+++ +.|||+|++++++|+++ ||+||+ ||+|| +.+.+++++ |.+
T Consensus 140 e~~~~~l~~~G~~fl~a~~~~hPA~k~l~~lR~~l--rTvfNi--PLin~------------s~lskk~A~-----G~~- 197 (440)
T 2tpt_A 140 NRFREIIKDVGVAIIGQTSSLAPADKRFYATRDIT--ATVDSI--PLITA------------SILAKKLAE-----GLD- 197 (440)
T ss_dssp HHHHHHHHHTSEEEEECCTTBSHHHHHHHHHHHHT--TCCCCH--HHHHH------------HHHHHHHTT-----CCS-
T ss_pred HHHHHHHHHcCEEEEcCchhhCHHHHHHHHHHHhh--CCccCh--hhcCC------------HHHHHHHhc-----CCC-
Confidence 99999999999999999 89999999999999999 899999 99997 233333332 554
Q ss_pred EEEE---ecC-----CccccCcCCceEEEEEeC-CeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCcc--
Q 023546 154 ALVV---HSE-----GLDEMSPLGPGLILDVTQ-EKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERG-- 222 (281)
Q Consensus 154 ~lvv---~Ge-----G~dE~s~~~~t~v~~~~~-g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~~~~~~~vl~G~~~-- 222 (281)
++|+ +|+ |+||+++.+++.+++.++ |......++..+ .++... ++++.++++. +++|+|+..
T Consensus 198 alVvdVk~G~gaf~~~~de~~~la~t~v~~~~~~G~~~~a~itd~~-----~plg~~-~G~a~E~ae~-~~vL~G~g~~~ 270 (440)
T 2tpt_A 198 ALVMDVKVGSGAFMPTYELSEALAEAIVGVANGAGVRTTALLTDMN-----QVLASS-AGNAVEVREA-VQFLTGEYRNP 270 (440)
T ss_dssp EEEEEEEESTTSSSSSHHHHHHHHHHHHHHHHHTTCEEEEEEEECS-----SCSSSC-EESHHHHHHH-HHHHHTSCCCH
T ss_pred eEEEEeccCCccccCCHHHHHHHHHHHHHHHHHcCCceEEEecCCC-----Cchhhc-CCCHHHHHHH-HHHHCCCCCch
Confidence 5555 552 455555544443322211 111111111100 122322 5689999987 999999843
Q ss_pred hHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhCCCCCC
Q 023546 223 AIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKGAPAF 278 (281)
Q Consensus 223 ~~~~~v~~naa~~L~~~G~~~~~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~~~~~ 278 (281)
+++|+|++|||.+||++|+++|++||+++|+++|+||+|+++|++|++.+++|+.+
T Consensus 271 ~~~d~vl~nAa~~L~~ag~a~~~~eg~~~A~~~i~sG~A~~kl~~~v~~~~g~~~~ 326 (440)
T 2tpt_A 271 RLFDVTMALCVEMLISGKLAKDDAEARAKLQAVLDNGKAAEVFGRMVAAQKGPTDF 326 (440)
T ss_dssp HHHHHHHHHHHHHHHHTTSCSSHHHHHHHHHHHHHTSHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcChHHHHHHHHHHHhCCChhh
Confidence 47899999999999999999999999999999999999999999999999999875
No 12
>4ex8_A ALNA; alpha/beta/alpha-domain, C-glycosynthase, divalent metal ION ligase; 2.10A {Streptomyces SP} PDB: 4ex9_A*
Probab=70.50 E-value=3.6 Score=36.72 Aligned_cols=123 Identities=21% Similarity=0.195 Sum_probs=79.2
Q ss_pred EecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCccc------HHHHHHH---------cCCCCCCCHHHHHHHH
Q 023546 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACG------SADVLEA---------LGVVIDLDPEGVRRCV 81 (281)
Q Consensus 17 i~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~g------s~dvLe~---------LGi~~~~s~~~a~~~l 81 (281)
++..|.+|..| -.+.++++..+|++|+-.|+=+-=++.+ |+|+-|- -|++.=++....-+.|
T Consensus 105 ~~a~g~~GaTT---VaaTm~lA~~AGI~VFaTGGiGGVHRgae~t~DISaDL~eLarTpV~VVcaG~KsILDi~~TLE~L 181 (316)
T 4ex8_A 105 ALAGGGLGATT---VAGTIVIAERAGIQVFTTAGIGGVHRRGEDTLDISPDLLQFRKTKMTVVSGGAKSILDHRLTAEYL 181 (316)
T ss_dssp HHHHCSCBEEC---HHHHHHHHHHHTCCEEECSCBCCBBTTHHHHCCBCTHHHHTTTCCEEEEESBBCTTBCHHHHHHHH
T ss_pred HHhCCCCcccc---HHHHHHHHHHCCCcEEEeCCccccCCCCCCCcchhhhHHHhcCCCeEEEecccchhhcchHHHHHH
Confidence 45668888865 3445566677799999988866222322 6776662 2566668889999999
Q ss_pred HHcCeEEEe-CCccChhh------------------hchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHH
Q 023546 82 DEAGIGFMM-STKYHPAM------------------KFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKM 142 (281)
Q Consensus 82 ~~~g~~fl~-~~~~~P~l------------------~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~ 142 (281)
+.+|+..+. ....+|++ .+++..++.||+.+-+ -+.||....+.+-+-. ....+
T Consensus 182 ET~GV~Vvgy~td~fPaFy~r~Sg~~~pr~d~~~e~A~~~~a~~~lgl~~g~----lvanPiP~e~~~~~~~---i~~~I 254 (316)
T 4ex8_A 182 ETAGVPVYGYRTDKLAAFVVREADVPVTRMDDLHTAARAAEAHWQVNGPGTV----LLTSPIDEQDAVDEAI---VEAAI 254 (316)
T ss_dssp HHTTCCEEEETCSBCCBTTBSCCSCBCEEESSHHHHHHHHHHHHHHHCSCEE----EEECCCCGGGCCCHHH---HHHHH
T ss_pred HhCCceEEEecCCCCceeeeCCCCCcCCCCCCHHHHHHHHHHHHHhCCCCeE----EEEcCCChhhcCCHHH---HHHHH
Confidence 999987773 45666644 4566778888876642 4678876666544332 33344
Q ss_pred HHHHHHc
Q 023546 143 ANALQRF 149 (281)
Q Consensus 143 ~~~~~~l 149 (281)
.++++..
T Consensus 255 ~~Al~eA 261 (316)
T 4ex8_A 255 AEALAQC 261 (316)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 13
>4gim_A Pseudouridine-5'-phosphate glycosidase; alpha-beta-alpha sandwich fold, hydrolase; HET: PSU; 1.80A {Escherichia coli} PDB: 4gij_A 4gik_A* 4gil_A*
Probab=64.88 E-value=12 Score=33.61 Aligned_cols=108 Identities=27% Similarity=0.290 Sum_probs=72.0
Q ss_pred ecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCccc------HHHHHHH---------cCCCCCCCHHHHHHHHH
Q 023546 18 VGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACG------SADVLEA---------LGVVIDLDPEGVRRCVD 82 (281)
Q Consensus 18 ~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~g------s~dvLe~---------LGi~~~~s~~~a~~~l~ 82 (281)
+..|.+|..| -.+.++++..+|++|+-.|+=+-=+|.+ |+|+-|- -|++.=++....-+.||
T Consensus 126 ~a~~~~GaTT---VaaTm~lA~~AGI~VFaTGGIGGVHRgae~t~DISADL~eLarTpV~VVcAG~KSILDi~~TLE~LE 202 (335)
T 4gim_A 126 VAAGKNGATT---VASTMIIAALAGIKVFATGGIGGVHRGAEHTFDISADLQELANTNVTVVCAGAASILDLGLTTEYLE 202 (335)
T ss_dssp HHTTCCEEEC---HHHHHHHHHHTTCCEEECSCCCCBBTTHHHHCCBCHHHHHHHHSCCEEEECBCCTTBCHHHHHHHHH
T ss_pred hhcCCCcccc---HHHHHHHHHHCCCcEEeeCCcCccCCCCCCCccccchHHHhccCCeEEEeecchhhccchhHHHHHH
Confidence 4567777765 3445667777899999988855333322 6777663 25565678889999999
Q ss_pred HcCeEEE-eCCccChhh-------------------hchHHHHhhhCCCChhhhhhhccCCCCCCceEEe
Q 023546 83 EAGIGFM-MSTKYHPAM-------------------KFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVG 132 (281)
Q Consensus 83 ~~g~~fl-~~~~~~P~l-------------------~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~G 132 (281)
.+|+..+ |.....|++ .+++..|++||+.+-+ -+.||....+.+-.
T Consensus 203 T~GVpVvgy~td~fPaFy~r~Sg~~~~~rvd~~~e~A~i~~~~~~lgl~~g~----lvanPIP~e~~i~~ 268 (335)
T 4gim_A 203 TFGVPLIGYQTKALPAFFCRTSPFDVSIRLDSASEIARAMVVKWQSGLNGGL----VVANPIPEQFAMPE 268 (335)
T ss_dssp HTTCCEEEETCSBCCBTTBSCCSSBCSEEECCHHHHHHHHHHHHHTTCCSCE----EEECCCCGGGCCCH
T ss_pred hcCceEEEecCCCCceeeccCCCCcCcceeCCHHHHHHHHHHHHHcCCCCce----EEeCCCCchhcCCH
Confidence 9998766 335555554 2356677888876532 45788776665543
No 14
>3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma synoviae} PDB: 3msr_A*
Probab=51.71 E-value=9.7 Score=34.70 Aligned_cols=77 Identities=14% Similarity=0.142 Sum_probs=46.3
Q ss_pred CcceEecCCCCCCC--CccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCC----------CCCHHHHHHH
Q 023546 13 DAVDIVGTGGDGAN--TVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVI----------DLDPEGVRRC 80 (281)
Q Consensus 13 ~~~Di~gtggdG~~--t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~----------~~s~~~a~~~ 80 (281)
.+| .+|+++++.+ +.-+.-..+.++...|.||..|-.++-... -..++|+.-|++. ..+++++.+.
T Consensus 152 G~i-kig~s~~~~t~~Q~~~f~aq~~~A~e~glPViiH~r~gr~a~-d~l~iL~e~g~~~~~vvi~H~~~~~~~~~a~~~ 229 (363)
T 3ovg_A 152 GII-KAGTGYGAIDRLELKALEVAARTSILTGCPILVHTQLGTMAL-EVAKHLIGFGANPDKIQISHLNKNPDKYYYEKV 229 (363)
T ss_dssp CEE-EEEEEETBEEHHHHHHHHHHHHHHHHHCCCEEEEEETTCSHH-HHHHHHHHHTCCGGGEEEECGGGSCCHHHHHHH
T ss_pred CEE-EEEeCCCCCCHHHHHHHHHHHHHHHHhCCEEEEeCCCCCCHH-HHHHHHHhcCCCCCcEEEEcCCCCCCHHHHHHH
Confidence 345 4666665433 334566677777788999999976432111 3456777767652 2356777777
Q ss_pred HHHcCeEEEeCC
Q 023546 81 VDEAGIGFMMST 92 (281)
Q Consensus 81 l~~~g~~fl~~~ 92 (281)
+++.|+ |+...
T Consensus 230 l~~~G~-yI~f~ 240 (363)
T 3ovg_A 230 IKETGV-TLCFD 240 (363)
T ss_dssp HHHHCC-EEEEC
T ss_pred HHHCCc-EEEEC
Confidence 745563 55443
No 15
>1vkm_A Conserved hypothetical protein TM1464; indigoidine synthase A-like fold, structural genomics, joint for structural genomics, JCSG; HET: MSE UNL; 1.90A {Thermotoga maritima} SCOP: c.138.1.1
Probab=47.13 E-value=16 Score=32.35 Aligned_cols=116 Identities=24% Similarity=0.315 Sum_probs=73.6
Q ss_pred EecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCccc---HHHHHHH---------cCCCCCCCHHHHHHHHHHc
Q 023546 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACG---SADVLEA---------LGVVIDLDPEGVRRCVDEA 84 (281)
Q Consensus 17 i~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~g---s~dvLe~---------LGi~~~~s~~~a~~~l~~~ 84 (281)
++..|.+|..| -...++++..+|++|+-.|+=+-=++.. |+|+-|- -|++.=++....-+.||.+
T Consensus 98 ~~a~g~~GaTT---VaaTm~lA~~AGI~VFaTGGiGGVHRgt~DISaDL~eL~rTpV~VVcaG~KsILDi~~TLE~LET~ 174 (297)
T 1vkm_A 98 VVAEGKNAATT---VSATIFLSRRIGIEVVVTGGTGGVHPGRVDVSQDLTEMSSSRAVLVSSGIKSILDVEATFEMLETL 174 (297)
T ss_dssp HHHHTCCEEEC---HHHHHHHHHHHTCCEEECSCBCCBCTTSSCBCHHHHHHTTCCEEEEESBBCTTSCHHHHHHHHHHT
T ss_pred HHhCCCCchhh---HHHHHHHHHHcCCcEEEecccccccCCCcccchhHHHhcCCCeEEEecccchhhcchhHHHHHHhC
Confidence 45667878765 3345566667799999988755222322 6777663 3555557888888899999
Q ss_pred CeEEEe-CCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEe
Q 023546 85 GIGFMM-STKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH 158 (281)
Q Consensus 85 g~~fl~-~~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~ 158 (281)
|+..+. ....+|+++. +.=|++ .+ -+-+|+-...+..+-..+|.+..++|-
T Consensus 175 GV~Vvgy~t~~fPaF~t-----r~Sg~~--------------~p----~~d~~~e~A~~~~~~~~lgl~~g~lva 226 (297)
T 1vkm_A 175 EIPLVGFRTNEFPLFFS-----RKSGRR--------------VP----RIENVEEVLKIYESMKEMELEKTLMVL 226 (297)
T ss_dssp TCCEEEESCSBCCBTTB-----SCCSCB--------------CC----EECSHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CceEEEecCCCCCceec-----CCCCCc--------------CC----CCCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 987663 4667777642 111221 11 355666666666677788887777754
No 16
>2l48_A N-acetylmuramoyl-L-alanine amidase; bacillus anthracis gamma- phage endolysin, PLYG, cell WALL B domain, homodimer, ACT-type domain; NMR {Bacillus phage gamma}
Probab=41.45 E-value=54 Score=23.43 Aligned_cols=37 Identities=16% Similarity=0.321 Sum_probs=33.0
Q ss_pred CCceEEeeeChhhHHHHHHHHHHcCCCeEEEEecCCc
Q 023546 126 VPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGL 162 (281)
Q Consensus 126 ~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~GeG~ 162 (281)
-.+...|-|.+...+-+..++..+|++.-++++++|+
T Consensus 19 ~n~V~TGgfg~~~v~ev~~am~~~g~~gkii~~~dGl 55 (85)
T 2l48_A 19 QNIIQSGAFSPYETPDVMGALTSLKMTADFILQSDGL 55 (85)
T ss_dssp CCCEEECCBCTTTHHHHHHHHHHTTCCEEEEECTTSC
T ss_pred ceEEEecccCHHHHHHHHHHHHHcCceEEEEECCCce
Confidence 4678999999999999999999999988888877775
No 17
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=40.87 E-value=68 Score=24.07 Aligned_cols=27 Identities=41% Similarity=0.464 Sum_probs=18.4
Q ss_pred ceEecCCCCCCCCccchHHHHHHHHcCCCcEEe
Q 023546 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAK 47 (281)
Q Consensus 15 ~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~ 47 (281)
|=++|.+|.|+ ||.+-.+ ...|++++.
T Consensus 4 I~l~G~~GsGK-----sT~a~~L-~~~g~~~i~ 30 (179)
T 3lw7_A 4 ILITGMPGSGK-----SEFAKLL-KERGAKVIV 30 (179)
T ss_dssp EEEECCTTSCH-----HHHHHHH-HHTTCEEEE
T ss_pred EEEECCCCCCH-----HHHHHHH-HHCCCcEEE
Confidence 34678888887 5565555 777877664
No 18
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=39.23 E-value=1e+02 Score=28.17 Aligned_cols=143 Identities=10% Similarity=0.054 Sum_probs=96.2
Q ss_pred EecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCC----CCcc-----------cHHHHHHHcCCCCCCCHHHHHHHH
Q 023546 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSS----SSAC-----------GSADVLEALGVVIDLDPEGVRRCV 81 (281)
Q Consensus 17 i~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~----~~~~-----------gs~dvLe~LGi~~~~s~~~a~~~l 81 (281)
|...|.+....+....-.+-.++.+|.-++|.+..-. ++.+ ..-|+++.++.+.+ ...+..+.-
T Consensus 32 IAEiG~NH~Gsle~A~~li~~Ak~aGAdavKfQ~~k~~tl~s~~~~~fq~~~~~~~~~ye~~~~~~l~~e-~~~~L~~~~ 110 (385)
T 1vli_A 32 IAEAGINHDGKLDQAFALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAE-WILPLLDYC 110 (385)
T ss_dssp EEEEETTTTTCHHHHHHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSCGG-GHHHHHHHH
T ss_pred EEeecCcccccHHHHHHHHHHHHHhCCCEEeeeeeccCcccCcchhhhccCCCCCccHHHHHHhcCCCHH-HHHHHHHHH
Confidence 5555555555777777788889999999999998653 2222 12378888888754 377888888
Q ss_pred HHcCeEEEeCCccChhhhchHHHH---hhhCCCChhhhhhhccCCC---C-CCceEEeeeChhhHHHHHHHHHHcCCCeE
Q 023546 82 DEAGIGFMMSTKYHPAMKFVRPVR---KKLKVKTVFNILGPMLNPA---C-VPFAVVGVYNENLVLKMANALQRFGLKRA 154 (281)
Q Consensus 82 ~~~g~~fl~~~~~~P~l~~l~~lR---~~lg~Rt~~ntl~~LlNP~---~-~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~ 154 (281)
++.|+-|+..+-=...+..|..+. =++|=|.+-|+ |||--+ + |-..=+|....+=...-.+.++..|.++.
T Consensus 111 ~~~Gi~~~stpfD~~svd~l~~~~vd~~KIgS~~~~N~--pLL~~va~~gKPViLStGmaTl~Ei~~Ave~i~~~Gn~~i 188 (385)
T 1vli_A 111 REKQVIFLSTVCDEGSADLLQSTSPSAFKIASYEINHL--PLLKYVARLNRPMIFSTAGAEISDVHEAWRTIRAEGNNQI 188 (385)
T ss_dssp HHTTCEEECBCCSHHHHHHHHTTCCSCEEECGGGTTCH--HHHHHHHTTCSCEEEECTTCCHHHHHHHHHHHHTTTCCCE
T ss_pred HHcCCcEEEccCCHHHHHHHHhcCCCEEEECcccccCH--HHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHCCCCcE
Confidence 999999998887767766664441 24555666666 555433 2 22344577655555555667777787788
Q ss_pred EEEec-CCc
Q 023546 155 LVVHS-EGL 162 (281)
Q Consensus 155 lvv~G-eG~ 162 (281)
++.++ .++
T Consensus 189 iLlhc~s~Y 197 (385)
T 1vli_A 189 AIMHCVAKY 197 (385)
T ss_dssp EEEEECSSS
T ss_pred EEEeccCCC
Confidence 88887 664
No 19
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=38.78 E-value=13 Score=32.22 Aligned_cols=34 Identities=26% Similarity=0.372 Sum_probs=27.0
Q ss_pred CcceEecCCCCCCCCccchHHHHHHHHcCCCcEEee
Q 023546 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQ 48 (281)
Q Consensus 13 ~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~H 48 (281)
..|=++|-||.|++| ++...|..+|+.|.+|+.-
T Consensus 42 ~vI~v~~KGGvGKTT--~a~nLA~~La~~G~~Vlli 75 (307)
T 3end_A 42 KVFAVYGKGGIGKST--TSSNLSAAFSILGKRVLQI 75 (307)
T ss_dssp EEEEEECSTTSSHHH--HHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCccHHH--HHHHHHHHHHHCCCeEEEE
Confidence 356677999999986 5666777888999999864
No 20
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=37.25 E-value=26 Score=30.58 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=28.0
Q ss_pred CcceEecC-CCCCCCCccchHHHHHHHHcCCCcEEeeCCC
Q 023546 13 DAVDIVGT-GGDGANTVNISTGASILAAACGAKVAKQGSR 51 (281)
Q Consensus 13 ~~~Di~gt-ggdG~~t~nis~~aa~vlA~~G~~V~~HG~~ 51 (281)
.+|=++++ ||.|+.| ++...|..+|+.|.+|+.--.+
T Consensus 105 kvI~vts~kgG~GKTt--va~nLA~~lA~~G~rVLLID~D 142 (299)
T 3cio_A 105 NILMITGATPDSGKTF--VSSTLAAVIAQSDQKVLFIDAD 142 (299)
T ss_dssp CEEEEEESSSSSCHHH--HHHHHHHHHHHTTCCEEEEECC
T ss_pred eEEEEECCCCCCChHH--HHHHHHHHHHhCCCcEEEEECC
Confidence 45667775 7889886 5667788888999999985443
No 21
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=37.03 E-value=14 Score=32.80 Aligned_cols=29 Identities=28% Similarity=0.347 Sum_probs=24.3
Q ss_pred EecCCCCCCCCccchHHHHHHHHcCCCcEEe
Q 023546 17 IVGTGGDGANTVNISTGASILAAACGAKVAK 47 (281)
Q Consensus 17 i~gtggdG~~t~nis~~aa~vlA~~G~~V~~ 47 (281)
+.|-||.|++| ++...|..+|+.|.+|+.
T Consensus 24 ~sgkGGvGKTT--va~~LA~~lA~~G~rVll 52 (329)
T 2woo_A 24 VGGKGGVGKTT--TSCSLAIQMSKVRSSVLL 52 (329)
T ss_dssp EECSSSSSHHH--HHHHHHHHHHTSSSCEEE
T ss_pred EeCCCCCcHHH--HHHHHHHHHHHCCCeEEE
Confidence 45778999986 677788889999999997
No 22
>1j3m_A The conserved hypothetical protein TT1751; X-RAY crystallography, structural genomics, riken structural genomics/proteomics initiative; 2.00A {Thermus thermophilus} SCOP: d.129.7.1
Probab=36.09 E-value=30 Score=26.13 Aligned_cols=62 Identities=23% Similarity=0.432 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHHHcCeEEEeCCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHc
Q 023546 70 IDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRF 149 (281)
Q Consensus 70 ~~~s~~~a~~~l~~~g~~fl~~~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~l 149 (281)
++...+..++.+++.||..+..-++.. .+++++|+. .+++.|+++.+|++...+-+.-...
T Consensus 12 ~~e~~~~l~~al~~~Gf~v~~~id~~~------~l~~k~g~~-------------~~~~~il~~cnP~~a~~~l~~~p~~ 72 (129)
T 1j3m_A 12 LAEARAQVEAALKEEGFGILTEIDVAA------TLKAKLGLE-------------KPPYLILGACNPNLAARALEALPEI 72 (129)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEHHH------HHHHHHCCC-------------CCCEEEEEEECHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCHHH------HHHHhcCCC-------------CCCeEEEEECCHHHHHHHHHhCHHH
Confidence 334456778888899999877533332 345666651 2478999999999987766654444
Q ss_pred C
Q 023546 150 G 150 (281)
Q Consensus 150 g 150 (281)
|
T Consensus 73 g 73 (129)
T 1j3m_A 73 G 73 (129)
T ss_dssp G
T ss_pred H
Confidence 4
No 23
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=36.09 E-value=15 Score=32.55 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=29.2
Q ss_pred CcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCC
Q 023546 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSR 51 (281)
Q Consensus 13 ~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~ 51 (281)
++|=|.|=||.|++| ++.=+|..||+.|.+|+.-..+
T Consensus 49 KVIAIaGKGGVGKTT--tavNLA~aLA~~GkkVllID~D 85 (314)
T 3fwy_A 49 KVFAVYGKGGIGKST--TSSNLSAAFSILGKRVLQIGCD 85 (314)
T ss_dssp EEEEEECSTTSSHHH--HHHHHHHHHHHTTCCEEEEEES
T ss_pred eEEEEECCCccCHHH--HHHHHHHHHHHCCCeEEEEecC
Confidence 467788999999985 3444677789999999987765
No 24
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=35.06 E-value=24 Score=30.27 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=26.8
Q ss_pred CcceEecC-CCCCCCCccchHHHHHHHHcCCCcEEeeCC
Q 023546 13 DAVDIVGT-GGDGANTVNISTGASILAAACGAKVAKQGS 50 (281)
Q Consensus 13 ~~~Di~gt-ggdG~~t~nis~~aa~vlA~~G~~V~~HG~ 50 (281)
+.|=+.++ ||.|+.| ++...|..+|+.|.+|++--.
T Consensus 83 kvI~vts~kgG~GKTt--~a~nLA~~lA~~G~rVLLID~ 119 (271)
T 3bfv_A 83 QSIVITSEAPGAGKST--IAANLAVAYAQAGYKTLIVDG 119 (271)
T ss_dssp CEEEEECSSTTSSHHH--HHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEECCCCCCcHHH--HHHHHHHHHHhCCCeEEEEeC
Confidence 45656665 8888876 566678888899999997544
No 25
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=34.96 E-value=59 Score=24.35 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=25.2
Q ss_pred ChhhHHHHHHHHHHcCCCeEEEEec-CCcc
Q 023546 135 NENLVLKMANALQRFGLKRALVVHS-EGLD 163 (281)
Q Consensus 135 h~~~~~~~~~~~~~lg~~~~lvv~G-eG~d 163 (281)
++++.+.+.+.++..|..-+.|++| +|.-
T Consensus 28 g~pL~~~Iv~~~~~~GiaGaTV~rgi~GfG 57 (114)
T 1o51_A 28 GKPLFEYLVKRAYELGMKGVTVYRGIMGFG 57 (114)
T ss_dssp TEEHHHHHHHHHHHTTCSCCEEEECSCCCC
T ss_pred CeEHHHHHHHHHHHCCCCeEEEEcCcEEEC
Confidence 5678888899999999999999999 8854
No 26
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=33.99 E-value=16 Score=32.30 Aligned_cols=33 Identities=33% Similarity=0.460 Sum_probs=26.0
Q ss_pred EecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCC
Q 023546 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSR 51 (281)
Q Consensus 17 i~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~ 51 (281)
+.|.||.|++| ++...|..+|+.|.+|+.--.+
T Consensus 19 ~sgKGGvGKTT--vA~~LA~~lA~~G~rVLlvD~D 51 (324)
T 3zq6_A 19 IGGKGGVGKTT--ISAATALWMARSGKKTLVISTD 51 (324)
T ss_dssp EEESTTSSHHH--HHHHHHHHHHHTTCCEEEEECC
T ss_pred EeCCCCchHHH--HHHHHHHHHHHCCCcEEEEeCC
Confidence 55779999986 5677788889999999875544
No 27
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=33.44 E-value=17 Score=34.92 Aligned_cols=35 Identities=29% Similarity=0.354 Sum_probs=27.6
Q ss_pred CcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeC
Q 023546 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQG 49 (281)
Q Consensus 13 ~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG 49 (281)
..+=+.|.||.|+.| ++...|..+|+.|.+|+.-.
T Consensus 9 ~i~~~sgkGGvGKTT--~a~~lA~~lA~~G~rVLlvd 43 (589)
T 1ihu_A 9 PYLFFTGKGGVGKTS--ISCATAIRLAEQGKRVLLVS 43 (589)
T ss_dssp SEEEEECSTTSSHHH--HHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEeCCCcCHHHH--HHHHHHHHHHHCCCcEEEEE
Confidence 334467999999986 57778888899999999833
No 28
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=33.27 E-value=24 Score=31.49 Aligned_cols=46 Identities=24% Similarity=0.234 Sum_probs=33.7
Q ss_pred cceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHH
Q 023546 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLE 64 (281)
Q Consensus 14 ~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe 64 (281)
.+=+.|-||.|++| ++...|..+|+.|.+|+.-..+ +..+..++|.
T Consensus 18 i~~~sgkGGvGKTt--~a~~lA~~la~~g~~vllid~D---~~~~l~~~l~ 63 (334)
T 3iqw_A 18 WIFVGGKGGVGKTT--TSCSLAIQLAKVRRSVLLLSTD---PAHNLSDAFS 63 (334)
T ss_dssp EEEEECSTTSSHHH--HHHHHHHHHTTSSSCEEEEECC---SSCHHHHHHT
T ss_pred EEEEeCCCCccHHH--HHHHHHHHHHhCCCcEEEEECC---CCCChhHHhc
Confidence 33356789999986 5777888889999999987776 3445556653
No 29
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=33.03 E-value=17 Score=32.50 Aligned_cols=33 Identities=30% Similarity=0.428 Sum_probs=26.0
Q ss_pred EecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCC
Q 023546 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSR 51 (281)
Q Consensus 17 i~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~ 51 (281)
+.|-||.|+.| ++...|..+|+.|.+|+.--.+
T Consensus 31 ~sgKGGvGKTT--vA~~LA~~lA~~G~rVLlvD~D 63 (349)
T 3ug7_A 31 FGGKGGVGKTT--MSAATGVYLAEKGLKVVIVSTD 63 (349)
T ss_dssp EECSSSTTHHH--HHHHHHHHHHHSSCCEEEEECC
T ss_pred EeCCCCccHHH--HHHHHHHHHHHCCCeEEEEeCC
Confidence 56779999986 5677788889999999875543
No 30
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=32.69 E-value=18 Score=29.41 Aligned_cols=30 Identities=27% Similarity=0.201 Sum_probs=23.0
Q ss_pred eEecC-CCCCCCCccchHHHHHHHHcCCCcEEe
Q 023546 16 DIVGT-GGDGANTVNISTGASILAAACGAKVAK 47 (281)
Q Consensus 16 Di~gt-ggdG~~t~nis~~aa~vlA~~G~~V~~ 47 (281)
=++++ ||.|++| ++.-.|..+|+.|.+|+.
T Consensus 5 ~v~s~kgGvGKTt--~a~nLa~~la~~G~rVll 35 (224)
T 1byi_A 5 FVTGTDTEVGKTV--ASCALLQAAKAAGYRTAG 35 (224)
T ss_dssp EEEESSTTSCHHH--HHHHHHHHHHHTTCCEEE
T ss_pred EEEECCCCCCHHH--HHHHHHHHHHHCCCCEEE
Confidence 35565 7889875 566677888999999986
No 31
>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0
Probab=32.42 E-value=32 Score=28.57 Aligned_cols=58 Identities=17% Similarity=0.181 Sum_probs=40.8
Q ss_pred cceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCC
Q 023546 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID 71 (281)
Q Consensus 14 ~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~ 71 (281)
.+|+-||=.|+.+.++-+.-+---+.+.|++|+.=-|++.-+..+..+.|+.+|+++.
T Consensus 12 ~~DlDGTLl~~~~~~~~~~~ai~~l~~~Gi~v~l~Tgr~~r~~~~~~~~l~~lg~~~~ 69 (268)
T 3qgm_A 12 IIDIDGVIGKSVTPIPEGVEGVKKLKELGKKIIFVSNNSTRSRRILLERLRSFGLEVG 69 (268)
T ss_dssp EEECBTTTEETTEECHHHHHHHHHHHHTTCEEEEEECCSSSCHHHHHHHHHHTTCCCC
T ss_pred EEcCcCcEECCCEeCcCHHHHHHHHHHcCCeEEEEeCcCCCCHHHHHHHHHHCCCCCC
Confidence 5788888777766433222333445677999998877766666678889999999743
No 32
>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A
Probab=32.33 E-value=23 Score=29.60 Aligned_cols=58 Identities=12% Similarity=0.086 Sum_probs=41.9
Q ss_pred cceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCC
Q 023546 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID 71 (281)
Q Consensus 14 ~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~ 71 (281)
.+|+-||=.|+.+.++-+.-+---+.+.|++|+.=.|++.-+..+....|+.+|+++.
T Consensus 9 ~~DlDGTLl~~~~~i~~~~eal~~l~~~G~~vvl~Tn~~gr~~~~~~~~l~~lg~~~~ 66 (264)
T 3epr_A 9 LIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVETP 66 (264)
T ss_dssp EECCBTTTEETTEECHHHHHHHHHHHHHTCCEEEEECCCSSCHHHHHHHHHTTTCCCC
T ss_pred EEeCCCceEeCCEECcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHCCCCCC
Confidence 5788888777777664333333445567999998887775566678899999999754
No 33
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=32.32 E-value=11 Score=31.03 Aligned_cols=31 Identities=26% Similarity=0.389 Sum_probs=24.3
Q ss_pred EecCCCCCCCCccchHHHHHHHHcCCCcEEeeC
Q 023546 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQG 49 (281)
Q Consensus 17 i~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG 49 (281)
+.|-||.|++| ++...|..+|+.|.+|+.-=
T Consensus 5 vs~kGGvGKTt--~a~~LA~~la~~g~~VlliD 35 (254)
T 3kjh_A 5 VAGKGGVGKTT--VAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp EECSSSHHHHH--HHHHHHHHHTTTCSCEEEEE
T ss_pred EecCCCCCHHH--HHHHHHHHHHHCCCeEEEEe
Confidence 35789999986 56667888899999998643
No 34
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=30.80 E-value=20 Score=30.09 Aligned_cols=30 Identities=27% Similarity=0.324 Sum_probs=23.8
Q ss_pred EecCCCCCCCCccchHHHHHHHHcCCCcEEee
Q 023546 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQ 48 (281)
Q Consensus 17 i~gtggdG~~t~nis~~aa~vlA~~G~~V~~H 48 (281)
+.+-||.|++| ++...|..+|..|.+|+.-
T Consensus 6 vs~KGGvGKTT--~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 6 IYGKGGIGKST--TTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEECTTSSHHH--HHHHHHHHHHTTTCCEEEE
T ss_pred EecCCCCcHHH--HHHHHHHHHHHCCCcEEEE
Confidence 45789999986 4666777788999999974
No 35
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=29.27 E-value=34 Score=30.68 Aligned_cols=37 Identities=27% Similarity=0.343 Sum_probs=27.2
Q ss_pred CcceEec-CCCCCCCCccchHHHHHHHHcCCCcEEeeCCC
Q 023546 13 DAVDIVG-TGGDGANTVNISTGASILAAACGAKVAKQGSR 51 (281)
Q Consensus 13 ~~~Di~g-tggdG~~t~nis~~aa~vlA~~G~~V~~HG~~ 51 (281)
..|=+++ -||.|++| ++...|..+|..|.+|+.--..
T Consensus 144 kvIav~s~KGGvGKTT--~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 144 SVVIFTSPCGGVGTST--VAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp EEEEEECSSTTSSHHH--HHHHHHHHHHHHTCCEEEEECC
T ss_pred eEEEEECCCCCChHHH--HHHHHHHHHHhCCCCEEEEECC
Confidence 3455665 78999886 4666777778889999986655
No 36
>2gdt_A Leader protein; P65 homolog; NSP1 (EC 3.4.22.-); beta-barrel, alpha-beta, replicase, structural genomics, PSI-2, protein structure initiative; NMR {Sars coronavirus} SCOP: d.346.1.1 PDB: 2hsx_A
Probab=28.82 E-value=28 Score=25.96 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=18.8
Q ss_pred ccCCCCHHHHHHHHHHHHHccH
Q 023546 239 SCKVNTLAEGVALAREIQLSGK 260 (281)
Q Consensus 239 ~G~~~~~~eg~~~A~~~l~sG~ 260 (281)
.|...+++||++.|++.|..|+
T Consensus 18 ~gw~~~~EeALe~ar~~L~~g~ 39 (116)
T 2gdt_A 18 RGFGDSVEEALSEAREHLKNGT 39 (116)
T ss_dssp CCSCSSHHHHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHhhcCC
Confidence 4666789999999999998885
No 37
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=28.77 E-value=22 Score=31.97 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=26.8
Q ss_pred EecCCCCCCCCccchHHHHHHHH--cCCCcEEeeCCCC
Q 023546 17 IVGTGGDGANTVNISTGASILAA--ACGAKVAKQGSRS 52 (281)
Q Consensus 17 i~gtggdG~~t~nis~~aa~vlA--~~G~~V~~HG~~~ 52 (281)
+.|-||.|++| ++...|..+| +.|.+|+.--..-
T Consensus 23 ~sgKGGvGKTT--vaanLA~~lA~~~~G~rVLLvD~D~ 58 (354)
T 2woj_A 23 VGGKGGVGKTT--SSCSIAIQMALSQPNKQFLLISTDP 58 (354)
T ss_dssp EEESTTSSHHH--HHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred EeCCCCCcHHH--HHHHHHHHHHHhcCCCeEEEEECCC
Confidence 45779999986 6777888899 9999999865543
No 38
>1q9u_A Uncharacterized protein APC35924; structural genomics, Zn-binding proteins, PSI, protein structure initiative; HET: CSW CME; 1.80A {Geobacillus stearothermophilus} SCOP: d.129.7.1
Probab=27.71 E-value=72 Score=23.89 Aligned_cols=60 Identities=15% Similarity=0.256 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHcCeEEEeCCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcC
Q 023546 72 LDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFG 150 (281)
Q Consensus 72 ~s~~~a~~~l~~~g~~fl~~~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg 150 (281)
.+.+..++.+++.||..+..-++... +++. |+. ..+++.++++.+|++...+.+.-...|
T Consensus 17 e~~~~l~~al~~~Gf~v~~~~d~~~~------~~~~-G~~------------~~~~~~il~~cnp~~a~~~l~~~p~~g 76 (130)
T 1q9u_A 17 ETIERLEESLKQEGFGVLWQFSVTEK------LQEK-GLD------------FSTPMVILEVCNPQEAARVLNENLLVG 76 (130)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEHHHH------HHHT-TCC------------CCSCEEEEEEECHHHHHHHHHHCGGGG
T ss_pred HHHHHHHHHHHHCCCEEEEEECHHHH------HHhc-CCC------------CCCCCEEEEEeCHHHHHHHHHhCHHHH
Confidence 34566788888999998776444333 3333 541 225789999999999887776544444
No 39
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=27.52 E-value=24 Score=30.18 Aligned_cols=30 Identities=33% Similarity=0.385 Sum_probs=23.6
Q ss_pred EecCCCCCCCCccchHHHHHHHHcCCCcEEee
Q 023546 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQ 48 (281)
Q Consensus 17 i~gtggdG~~t~nis~~aa~vlA~~G~~V~~H 48 (281)
+.+-||.|++| ++...|..+|+.|.+|+.-
T Consensus 7 vs~KGGvGKTT--~a~nLA~~La~~G~rVlli 36 (289)
T 2afh_E 7 IYGKGGIGKST--TTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp EEECTTSSHHH--HHHHHHHHHHHTTCCEEEE
T ss_pred EeCCCcCcHHH--HHHHHHHHHHHCCCeEEEE
Confidence 45789999986 4666777788899999963
No 40
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=26.93 E-value=3.7e+02 Score=24.69 Aligned_cols=136 Identities=13% Similarity=0.050 Sum_probs=77.9
Q ss_pred cceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCC---------CCc--ccHHHHHHHc----CCCCCCCHHHHH
Q 023546 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSS---------SSA--CGSADVLEAL----GVVIDLDPEGVR 78 (281)
Q Consensus 14 ~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~---------~~~--~gs~dvLe~L----Gi~~~~s~~~a~ 78 (281)
.+-++|+|| |-+..|..+|..|++|....-... .+. -|..++++.. ++....+++++
T Consensus 10 ~~~vIGlG~-------vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea- 81 (446)
T 4a7p_A 10 RIAMIGTGY-------VGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEG- 81 (446)
T ss_dssp EEEEECCSH-------HHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHH-
T ss_pred EEEEEcCCH-------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHH-
Confidence 366789998 556788899999999997654321 111 2455555441 24455555544
Q ss_pred HHHHHcCeEEEeCCccC---hhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCC-CeE
Q 023546 79 RCVDEAGIGFMMSTKYH---PAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGL-KRA 154 (281)
Q Consensus 79 ~~l~~~g~~fl~~~~~~---P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~-~~~ 154 (281)
+++..+.|+..|.=. -.--.+..+|.. ...+.+.++|- .-....+-..|...+.+.+.+...+. ...
T Consensus 82 --~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v------~~~i~~~l~~g-~iVV~~STv~pgtt~~l~~~l~e~~~~~d~ 152 (446)
T 4a7p_A 82 --VKDADAVFIAVGTPSRRGDGHADLSYVFAA------AREIAENLTKP-SVIVTKSTVPVGTGDEVERIIAEVAPNSGA 152 (446)
T ss_dssp --HTTCSEEEECCCCCBCTTTCCBCTHHHHHH------HHHHHHSCCSC-CEEEECSCCCTTHHHHHHHHHHHHSTTSCC
T ss_pred --HhcCCEEEEEcCCCCccccCCccHHHHHHH------HHHHHHhcCCC-CEEEEeCCCCchHHHHHHHHHHHhCCCCCc
Confidence 567788888764321 011123334432 34556666652 11222233467778888887776543 245
Q ss_pred EEEec-CCccccC
Q 023546 155 LVVHS-EGLDEMS 166 (281)
Q Consensus 155 lvv~G-eG~dE~s 166 (281)
-|+.| |...|-+
T Consensus 153 ~v~~~Pe~a~eG~ 165 (446)
T 4a7p_A 153 KVVSNPEFLREGA 165 (446)
T ss_dssp EEEECCCCCCTTS
T ss_pred eEEeCcccccccc
Confidence 67777 7666654
No 41
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=26.71 E-value=39 Score=30.32 Aligned_cols=46 Identities=20% Similarity=0.206 Sum_probs=33.1
Q ss_pred cceEecCCCCCCCCccchHHHHHHHH--cCCCcEEeeCCCCCCCcccHHHHHH
Q 023546 14 AVDIVGTGGDGANTVNISTGASILAA--ACGAKVAKQGSRSSSSACGSADVLE 64 (281)
Q Consensus 14 ~~Di~gtggdG~~t~nis~~aa~vlA--~~G~~V~~HG~~~~~~~~gs~dvLe 64 (281)
.+=+.|-||.|++| ++...|..+| ..|.+|+.-..+ +..+..+.|.
T Consensus 20 i~~~~gkGGvGKTt--~a~~lA~~la~~~~g~~vllid~D---~~~~l~~~~~ 67 (348)
T 3io3_A 20 WIFVGGKGGVGKTT--TSSSVAVQLALAQPNEQFLLISTD---PAHNLSDAFC 67 (348)
T ss_dssp EEEEECSTTSSHHH--HHHHHHHHHHHHCTTSCEEEEECC---SSCHHHHHHT
T ss_pred EEEEeCCCCCcHHH--HHHHHHHHHHHhcCCCeEEEEECC---CCCChHHHhc
Confidence 44466889999986 5667777888 899999988776 3344555543
No 42
>2dcl_A Hypothetical UPF0166 protein PH1503; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; HET: AMP; 2.28A {Pyrococcus horikoshii}
Probab=26.33 E-value=73 Score=24.36 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=25.1
Q ss_pred ChhhHHHHHHHHHHcCCCeEEEEec-CCcc
Q 023546 135 NENLVLKMANALQRFGLKRALVVHS-EGLD 163 (281)
Q Consensus 135 h~~~~~~~~~~~~~lg~~~~lvv~G-eG~d 163 (281)
|+++.+.+.+.++..|...+.|++| +|.-
T Consensus 24 g~pL~~~Iv~~a~~~GiaGaTV~rgi~GfG 53 (127)
T 2dcl_A 24 GRPLYKVIVEKLREMGIAGATVYRGIYGFG 53 (127)
T ss_dssp TEEHHHHHHHHHHHTTCSCEEEEECSEEEC
T ss_pred CcCHHHHHHHHHHHCCCCeEEEEcCcEEEC
Confidence 6778888999999999999999998 7743
No 43
>3tc3_A UV damage endonuclease; TIM-barrel, hydrolase; 1.50A {Sulfolobus acidocaldarius}
Probab=25.18 E-value=30 Score=30.83 Aligned_cols=101 Identities=12% Similarity=0.091 Sum_probs=59.8
Q ss_pred CCCCCCcccHHHHHHHcCCCCCCCHHHHHHHHHHcCeEEEeC-CccCh-----------------hhhchHHHHhhhCCC
Q 023546 50 SRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMS-TKYHP-----------------AMKFVRPVRKKLKVK 111 (281)
Q Consensus 50 ~~~~~~~~gs~dvLe~LGi~~~~s~~~a~~~l~~~g~~fl~~-~~~~P-----------------~l~~l~~lR~~lg~R 111 (281)
+|.++-+.-+.+-|+.++..=..+..++.+.-.++||-|+=. +.+.| .++.+-.+=++.|+|
T Consensus 38 ~rt~~~~~~~~~~l~~l~~~Nl~~l~~il~~n~~~~I~~yRiSS~l~P~~thp~~~~~~~~~~~~~l~~iG~~a~~~~iR 117 (310)
T 3tc3_A 38 DKTIKLSSLSEERVLKVSSSNLLCLKNILEWNLKHEILFFRISSNTIPLASHPKFHVNWKDKLSHILGDIGDFIKENSIR 117 (310)
T ss_dssp CCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEECCTTSSTTTTSTTCCCCHHHHTHHHHHHHHHHHHHTTCE
T ss_pred CccEEHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCEEEEeCcccCCCccccccccchHHHHHHHHHHHHHHHHHcCcE
Confidence 455554455678888875421233445555666899988743 22222 233333344566666
Q ss_pred ChhhhhhhccCCCCCCceEEeeeCh-------hhHHHHHHHHHHcCCCeEEEEec
Q 023546 112 TVFNILGPMLNPACVPFAVVGVYNE-------NLVLKMANALQRFGLKRALVVHS 159 (281)
Q Consensus 112 t~~ntl~~LlNP~~~~~~v~Gv~h~-------~~~~~~~~~~~~lg~~~~lvv~G 159 (281)
-.||- ..+.+++-..| .-++.+++++..+|.+..++++.
T Consensus 118 LS~HP---------gqF~vL~S~~~~Vv~~SI~dL~yHa~~ld~mG~~~~i~IH~ 163 (310)
T 3tc3_A 118 ISMHP---------GQYVVLNSVREEVVRSSIMELKYHADLLDSMGIEGKIQIHV 163 (310)
T ss_dssp EEECC---------CTTCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEC
T ss_pred EEecC---------CCCccCCCCCHHHHHHHHHHHHHHHHHHHhcCCCcCceeec
Confidence 55443 23444444444 34578999999999988899994
No 44
>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*
Probab=24.69 E-value=57 Score=29.24 Aligned_cols=58 Identities=17% Similarity=0.086 Sum_probs=40.2
Q ss_pred cceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHH-HcCCCCC
Q 023546 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLE-ALGVVID 71 (281)
Q Consensus 14 ~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe-~LGi~~~ 71 (281)
.+|+-||=++|...++=..-+--.|.+.|++++.--|.+..+.....+.|+ .||+++.
T Consensus 17 l~D~DGvl~~g~~~~p~a~~~l~~l~~~g~~~~~vTNn~~~~~~~~~~~l~~~lgi~~~ 75 (352)
T 3kc2_A 17 AFDIDGVLFRGKKPIAGASDALKLLNRNKIPYILLTNGGGFSERARTEFISSKLDVDVS 75 (352)
T ss_dssp EECCBTTTEETTEECTTHHHHHHHHHHTTCCEEEECSCCSSCHHHHHHHHHHHHTSCCC
T ss_pred EEECCCeeEcCCeeCcCHHHHHHHHHHCCCEEEEEeCCCCCCchHHHHHHHHhcCCCCC
Confidence 688889989888755544334445678899999877765444444556665 7999754
No 45
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=24.36 E-value=29 Score=27.54 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=23.3
Q ss_pred cCCCCCCCCccchHHHHHHHHcCCCcEEeeCCC
Q 023546 19 GTGGDGANTVNISTGASILAAACGAKVAKQGSR 51 (281)
Q Consensus 19 gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~ 51 (281)
+.||.|+.| ++...|..+|..|.+|+.--..
T Consensus 9 ~kgG~GKTt--~a~~la~~la~~g~~vlliD~D 39 (206)
T 4dzz_A 9 PKGGSGKTT--AVINIATALSRSGYNIAVVDTD 39 (206)
T ss_dssp SSTTSSHHH--HHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCCccHHH--HHHHHHHHHHHCCCeEEEEECC
Confidence 458888876 5666777888999999975443
No 46
>3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB: 2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A* 3fdk_A* 3htw_A*
Probab=23.57 E-value=1.8e+02 Score=25.73 Aligned_cols=66 Identities=15% Similarity=0.215 Sum_probs=41.6
Q ss_pred EecCCCCCCC--CccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCC----------CCCHHHHHHHHHH
Q 023546 17 IVGTGGDGAN--TVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVI----------DLDPEGVRRCVDE 83 (281)
Q Consensus 17 i~gtggdG~~--t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~----------~~s~~~a~~~l~~ 83 (281)
-+|..|...+ ...+.-..+-++...|.||..|-.++-... -..++|+..|++. ..+++++.+.++.
T Consensus 159 Eigld~~~~~~~q~~~f~aq~~lA~~~glPViiH~~~gr~a~-~~~~iL~~~~~~~~~~vi~H~~~~~~~e~a~~~l~~ 236 (339)
T 3gtx_A 159 KLASSRDAITPYEQLFFRAAARVQRETGVPIITHTQEGQQGP-QQAELLTSLGADPARIMIGHMDGNTDPAYHRETLRH 236 (339)
T ss_dssp EEECCSSCCCHHHHHHHHHHHHHHHHHCCCEEEECSTTCCHH-HHHHHHHHTTCCGGGEEECCGGGCCCHHHHHHHHTT
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHHHCCeEEEeCCCCcCHH-HHHHHHHHcCCCcccEEEEccCCCCCHHHHHHHHHc
Confidence 5677765333 444566667777778999999987642221 2577787766652 2456667666654
No 47
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=23.43 E-value=1.6e+02 Score=26.50 Aligned_cols=142 Identities=14% Similarity=0.148 Sum_probs=92.8
Q ss_pred EecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCC----CCcc--------c--HHHHHHHcCCCCCCCHHHHHHHHH
Q 023546 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSS----SSAC--------G--SADVLEALGVVIDLDPEGVRRCVD 82 (281)
Q Consensus 17 i~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~----~~~~--------g--s~dvLe~LGi~~~~s~~~a~~~l~ 82 (281)
|.+.|.+....+....-.+-.++.+|..++|.+..-. ++.+ | .-++++.+|.+.+. ..+..+.-+
T Consensus 23 IAe~g~NH~gs~e~a~~li~~ak~aGadavKfq~~k~~tl~s~~~~~fq~~~~~~~~y~~~~~~~l~~e~-~~~L~~~~~ 101 (349)
T 2wqp_A 23 ICEIGINHEGSLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEED-EIKLKEYVE 101 (349)
T ss_dssp EEEEETTTTTCHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHH-HHHHHHHHH
T ss_pred EEecCCcccCCHHHHHHHHHHHHHhCCCEEeeeecccccccCcchhccccCCCCccHHHHHHHhCCCHHH-HHHHHHHHH
Confidence 5555554444667777788889999999999995432 1111 1 23899999886442 567777778
Q ss_pred HcCeEEEeCCccChhhhchHHHH---hhhCCCChhhhhhhccCCC---C-CCceEEeeeChhhHHHHHHHHHHcCCCeEE
Q 023546 83 EAGIGFMMSTKYHPAMKFVRPVR---KKLKVKTVFNILGPMLNPA---C-VPFAVVGVYNENLVLKMANALQRFGLKRAL 155 (281)
Q Consensus 83 ~~g~~fl~~~~~~P~l~~l~~lR---~~lg~Rt~~ntl~~LlNP~---~-~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~l 155 (281)
+.|+.|+..+-=...+..+..+- =++|=|.+-|+ |||--+ + |-..=+|....+=...-.+.++..|. +.+
T Consensus 102 ~~Gi~~~st~~d~~svd~l~~~~v~~~KI~S~~~~n~--~LL~~va~~gkPviLstGmat~~Ei~~Ave~i~~~G~-~ii 178 (349)
T 2wqp_A 102 SKGMIFISTLFSRAAALRLQRMDIPAYKIGSGECNNY--PLIKLVASFGKPIILSTGMNSIESIKKSVEIIREAGV-PYA 178 (349)
T ss_dssp HTTCEEEEEECSHHHHHHHHHHTCSCEEECGGGTTCH--HHHHHHHTTCSCEEEECTTCCHHHHHHHHHHHHHHTC-CEE
T ss_pred HhCCeEEEeeCCHHHHHHHHhcCCCEEEECcccccCH--HHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHcCC-CEE
Confidence 99999998877777776665542 24566666666 555443 2 22334576654555555666777776 777
Q ss_pred EEec-CCc
Q 023546 156 VVHS-EGL 162 (281)
Q Consensus 156 vv~G-eG~ 162 (281)
+.++ .++
T Consensus 179 Llhc~s~Y 186 (349)
T 2wqp_A 179 LLHCTNIY 186 (349)
T ss_dssp EEECCCCS
T ss_pred EEeccCCC
Confidence 7787 664
No 48
>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A
Probab=23.26 E-value=1e+02 Score=24.87 Aligned_cols=58 Identities=19% Similarity=0.035 Sum_probs=36.6
Q ss_pred cceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCC
Q 023546 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID 71 (281)
Q Consensus 14 ~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~ 71 (281)
+.|+-||=.|+.+.++-..-+--.+.+.|+++....++...+.....+.|+.+|++..
T Consensus 11 ~fDlDGTLld~~~~~~~~~~ai~~l~~~G~~~~~~t~~~~~~~~~~~~~l~~~g~~~~ 68 (259)
T 2ho4_A 11 LVDLNGTLHIEDAAVPGAQEALKRLRATSVMVRFVTNTTKETKKDLLERLKKLEFEIS 68 (259)
T ss_dssp EEESSSSSCC---CCTTHHHHHHHHHTSSCEEEEEECCSSCCHHHHHHHHHHTTCCCC
T ss_pred EEeCcCcEEeCCEeCcCHHHHHHHHHHCCCeEEEEeCCCCcCHHHHHHHHHHcCCCcc
Confidence 5777788777766544333334556788999987666554444456788888898754
No 49
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=22.61 E-value=3.6e+02 Score=23.04 Aligned_cols=83 Identities=13% Similarity=0.120 Sum_probs=49.2
Q ss_pred CCcceEecCCCCCCCCccchHHHHHHHH-cCCCcEEeeCCCCCCCcccHHHHHHH----cCCCC--CCCHHHHHHHH---
Q 023546 12 GDAVDIVGTGGDGANTVNISTGASILAA-ACGAKVAKQGSRSSSSACGSADVLEA----LGVVI--DLDPEGVRRCV--- 81 (281)
Q Consensus 12 ~~~~Di~gtggdG~~t~nis~~aa~vlA-~~G~~V~~HG~~~~~~~~gs~dvLe~----LGi~~--~~s~~~a~~~l--- 81 (281)
+..+=++|.+|.|++| ..-..|..++ ..|.+|..-+.+. .+.+..+-|+. +|+++ ..++.+....+
T Consensus 105 g~vi~lvG~~GsGKTT--l~~~LA~~l~~~~G~~V~lv~~D~--~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~ 180 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTT--TLAKLAAISMLEKHKKIAFITTDT--YRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF 180 (296)
T ss_dssp SSEEEEEESTTSSHHH--HHHHHHHHHHHTTCCCEEEEECCC--SSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG
T ss_pred CcEEEEECCCCCCHHH--HHHHHHHHHHHhcCCEEEEEecCc--ccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh
Confidence 3467789999999964 1222333444 4799998877654 24444444443 56664 23455444433
Q ss_pred HHcCeEEEeCCccChhh
Q 023546 82 DEAGIGFMMSTKYHPAM 98 (281)
Q Consensus 82 ~~~g~~fl~~~~~~P~l 98 (281)
.+..+.+++.+-..+..
T Consensus 181 ~~~dlvIiDT~G~~~~~ 197 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFKD 197 (296)
T ss_dssp GGSSEEEEECCCCCTTS
T ss_pred cCCCEEEEeCCCCChhh
Confidence 45678888876555543
No 50
>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii}
Probab=22.18 E-value=54 Score=27.24 Aligned_cols=57 Identities=14% Similarity=0.066 Sum_probs=37.0
Q ss_pred cceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCC
Q 023546 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVI 70 (281)
Q Consensus 14 ~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~ 70 (281)
.+|+-||=+++...++-+.-+---+.+.|++|+.--|+...+.....+-|+.+|++.
T Consensus 5 ~~D~DGtL~~~~~~~~~~~~~l~~l~~~g~~~~~~T~r~~~~~~~~~~~l~~lg~~~ 61 (263)
T 1zjj_A 5 IFDMDGVLYRGNRAIPGVRELIEFLKERGIPFAFLTNNSTKTPEMYREKLLKMGIDV 61 (263)
T ss_dssp EEECBTTTEETTEECTTHHHHHHHHHHHTCCEEEEESCCSSCHHHHHHHHHTTTCCC
T ss_pred EEeCcCceEeCCEeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHCCCCC
Confidence 467778877776544333323334556799999877777555555666777789874
No 51
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=21.99 E-value=92 Score=26.87 Aligned_cols=42 Identities=29% Similarity=0.343 Sum_probs=27.8
Q ss_pred chHHHHHHHHcCCCcEEeeCCC---CCCCccc---HHHHHHHcCCCCC
Q 023546 30 ISTGASILAAACGAKVAKQGSR---SSSSACG---SADVLEALGVVID 71 (281)
Q Consensus 30 is~~aa~vlA~~G~~V~~HG~~---~~~~~~g---s~dvLe~LGi~~~ 71 (281)
.-+.+|..||+.|++|+.-=-+ +.+..+| +..+|+.+|++..
T Consensus 15 aGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~ 62 (397)
T 3oz2_A 15 GGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKAD 62 (397)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCC
T ss_pred HHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHHHHHcCCCch
Confidence 3567899999999999864211 1111233 5678999988654
No 52
>3pnz_A Phosphotriesterase family protein; amidohydrolase fold; HET: KCX; 1.60A {Listeria monocytogenes serotype 4b strorganism_taxid} SCOP: c.1.9.0
Probab=21.86 E-value=1.4e+02 Score=26.46 Aligned_cols=75 Identities=17% Similarity=0.213 Sum_probs=46.5
Q ss_pred cceEecCCCCCCC--CccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCC----------CCCHHHHHHHH
Q 023546 14 AVDIVGTGGDGAN--TVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVI----------DLDPEGVRRCV 81 (281)
Q Consensus 14 ~~Di~gtggdG~~--t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~----------~~s~~~a~~~l 81 (281)
+| -+|++|+..+ +..+.-..+.++...|.||..|-.++- ...-..++|+..|++. ..+++++.+.+
T Consensus 152 vI-EiGld~~~~~~~q~~~f~aq~~~A~~~glPViiH~r~g~-~a~~~l~iL~e~~~~~~~vvi~H~~~s~~~e~a~~~l 229 (330)
T 3pnz_A 152 QV-KFGTGYNMITPLEEKTIRAVARAHHETKAPIHSHTEAGT-MALEQIEILKQENIPLEYLSIGHMDRNLDPYYHKQVA 229 (330)
T ss_dssp EE-EEECBTTBCCHHHHHHHHHHHHHHHHHCCCEEEECGGGC-CHHHHHHHHHHTTCCGGGEEETTGGGSCCHHHHHHHH
T ss_pred eE-EEEcCCCCCCHHHHHHHHHHHHHHHHHCCeEEEeCCCCc-ChHHHHHHHHHcCCCCCeEEEecCCCCCCHHHHHHHH
Confidence 35 5677776544 445667777778888999999976531 1122467787777652 24566666666
Q ss_pred HHcCeEEEeCC
Q 023546 82 DEAGIGFMMST 92 (281)
Q Consensus 82 ~~~g~~fl~~~ 92 (281)
+. | +|+...
T Consensus 230 ~~-G-~~i~~~ 238 (330)
T 3pnz_A 230 KT-G-AFMSFD 238 (330)
T ss_dssp TT-T-CEEEEC
T ss_pred Hc-C-cEEEEc
Confidence 54 5 355443
No 53
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.80 E-value=60 Score=22.19 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=24.7
Q ss_pred cccHHHHHHHcCCCCCCCHHHHHHHHHHc
Q 023546 56 ACGSADVLEALGVVIDLDPEGVRRCVDEA 84 (281)
Q Consensus 56 ~~gs~dvLe~LGi~~~~s~~~a~~~l~~~ 84 (281)
..+..|.++-||++...+.+++++...+.
T Consensus 5 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l 33 (82)
T 2ej7_A 5 SSGMVDYYEVLDVPRQASSEAIKKAYRKL 33 (82)
T ss_dssp CSSSCCHHHHTTCCTTCCHHHHHHHHHHH
T ss_pred CCCCcCHHHHcCCCCCCCHHHHHHHHHHH
Confidence 44567899999999999999999988875
No 54
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=21.70 E-value=34 Score=28.75 Aligned_cols=35 Identities=26% Similarity=0.409 Sum_probs=24.4
Q ss_pred CcceEe-cCCCCCCCCccchHHHHHHHHcCCCcEEeeC
Q 023546 13 DAVDIV-GTGGDGANTVNISTGASILAAACGAKVAKQG 49 (281)
Q Consensus 13 ~~~Di~-gtggdG~~t~nis~~aa~vlA~~G~~V~~HG 49 (281)
..|=++ +-||.|++| ++..+|..+|+.|.+|+.--
T Consensus 19 ~vI~v~s~kGGvGKTT--~a~nLA~~la~~G~~VlliD 54 (262)
T 2ph1_A 19 SRIAVMSGKGGVGKST--VTALLAVHYARQGKKVGILD 54 (262)
T ss_dssp CEEEEECSSSCTTHHH--HHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEcCCCCCCHHH--HHHHHHHHHHHCCCeEEEEe
Confidence 344444 447888876 46667778888999998743
No 55
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=21.61 E-value=34 Score=28.25 Aligned_cols=29 Identities=31% Similarity=0.314 Sum_probs=21.8
Q ss_pred cCCCCCCCCccchHHHHHHHHcCCCcEEeeC
Q 023546 19 GTGGDGANTVNISTGASILAAACGAKVAKQG 49 (281)
Q Consensus 19 gtggdG~~t~nis~~aa~vlA~~G~~V~~HG 49 (281)
+.||.|++| ++...|..+|..|.+|+.--
T Consensus 10 ~kgGvGKTt--~a~~LA~~la~~g~~VlliD 38 (260)
T 3q9l_A 10 GKGGVGKTT--SSAAIATGLAQKGKKTVVID 38 (260)
T ss_dssp SSTTSSHHH--HHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCcHHH--HHHHHHHHHHhCCCcEEEEE
Confidence 348888876 46667778889999999743
No 56
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=20.85 E-value=45 Score=28.43 Aligned_cols=33 Identities=30% Similarity=0.373 Sum_probs=24.7
Q ss_pred CcceEec---CCCCCCCCccchHHHHHHHHcCCCcEEe
Q 023546 13 DAVDIVG---TGGDGANTVNISTGASILAAACGAKVAK 47 (281)
Q Consensus 13 ~~~Di~g---tggdG~~t~nis~~aa~vlA~~G~~V~~ 47 (281)
+.+=+++ -||.|+.| ++...|..+|..|.+|+.
T Consensus 35 ~~i~v~~~s~KGGvGKTT--~a~nLA~~la~~G~rVll 70 (298)
T 2oze_A 35 EAIVILNNYFKGGVGKSK--LSTMFAYLTDKLNLKVLM 70 (298)
T ss_dssp SCEEEEECCSSSSSSHHH--HHHHHHHHHHHTTCCEEE
T ss_pred cEEEEEeccCCCCchHHH--HHHHHHHHHHhCCCeEEE
Confidence 4555665 68999986 455567778889999987
No 57
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=20.71 E-value=2.4e+02 Score=22.89 Aligned_cols=64 Identities=22% Similarity=0.167 Sum_probs=40.1
Q ss_pred EecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCC-----CC-CCHHHHHHHHHHc
Q 023546 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVV-----ID-LDPEGVRRCVDEA 84 (281)
Q Consensus 17 i~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~-----~~-~s~~~a~~~l~~~ 84 (281)
++-||+.|. |-...|.-+++.|.+|+..+.+.........+-++..|.. .+ .+.+++.+.+++.
T Consensus 16 vlITGas~g----iG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 85 (256)
T 3ezl_A 16 AYVTGGMGG----IGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKV 85 (256)
T ss_dssp EEETTTTSH----HHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHH
T ss_pred EEEECCCCh----HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHH
Confidence 345666543 6778889999999999998866544433344455555533 22 3466666666643
No 58
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=20.18 E-value=3.5e+02 Score=23.22 Aligned_cols=80 Identities=19% Similarity=0.203 Sum_probs=46.6
Q ss_pred CcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHH----HHHHHcCCCCC-----CCHHHH----HH
Q 023546 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSA----DVLEALGVVID-----LDPEGV----RR 79 (281)
Q Consensus 13 ~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~----dvLe~LGi~~~-----~s~~~a----~~ 79 (281)
..+=++|.+|.|++| .....|..++..|.+|..-+.... +.++. ...+..|+++- .++.+. .+
T Consensus 99 ~vi~i~G~~G~GKTT--~~~~la~~~~~~g~~v~l~~~D~~--r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTT--TAGKLAYFYKKKGFKVGLVGADVY--RPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp EEEEEECSSCSSTTH--HHHHHHHHHHHTTCCEEEEECCCS--SSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHH--HHHHHHHHHHHCCCeEEEEecCCC--CHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 356678999999975 233345556777999998776542 22332 23455677642 244433 33
Q ss_pred HH--HHcCeEEEeCCccCh
Q 023546 80 CV--DEAGIGFMMSTKYHP 96 (281)
Q Consensus 80 ~l--~~~g~~fl~~~~~~P 96 (281)
.+ +...+.+++.|-...
T Consensus 175 ~~~~~~~D~ViIDTpg~~~ 193 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTAGRHG 193 (297)
T ss_dssp HHHHTTCSEEEEECCCSCC
T ss_pred HHHhCCCCEEEEeCCCCcc
Confidence 33 234677888754443
No 59
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0
Probab=20.07 E-value=47 Score=27.46 Aligned_cols=58 Identities=17% Similarity=0.117 Sum_probs=38.6
Q ss_pred cceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCC
Q 023546 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID 71 (281)
Q Consensus 14 ~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~ 71 (281)
.+|+-||=.|+.+.++-+.-+-.-+.+.|++|+.=-|++.-+..+..+.|+.+|+++.
T Consensus 10 ~~DlDGTLl~~~~~~~~~~~ai~~l~~~Gi~v~laTgrs~r~~~~~~~~l~~lg~~~~ 67 (266)
T 3pdw_A 10 LIDLDGTMYNGTEKIEEACEFVRTLKDRGVPYLFVTNNSSRTPKQVADKLVSFDIPAT 67 (266)
T ss_dssp EEECSSSTTCHHHHHHHHHHHHHHHHHTTCCEEEEESCCSSCHHHHHHHHHHTTCCCC
T ss_pred EEeCcCceEeCCEeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCC
Confidence 5788888666644323222233345677999998777665555678899999998754
Done!