Query 023546
Match_columns 281
No_of_seqs 133 out of 1124
Neff 7.5
Searched_HMMs 13730
Date Mon Mar 25 08:40:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023546.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023546hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1o17a2 c.27.1.1 (A:71-343) An 100.0 4.7E-80 3.4E-84 554.6 29.0 260 12-274 2-262 (273)
2 d2elca2 c.27.1.1 (A:66-329) An 100.0 6.3E-66 4.6E-70 459.5 30.9 257 12-274 6-264 (264)
3 d1khda2 c.27.1.1 (A:81-344) An 100.0 1.3E-65 9.2E-70 457.8 30.3 258 12-270 4-263 (264)
4 d1uoua2 c.27.1.1 (A:101-373) T 100.0 1.2E-58 8.6E-63 415.9 2.3 245 12-279 10-257 (273)
5 d1brwa2 c.27.1.1 (A:71-330) Py 100.0 2.8E-57 2E-61 404.3 9.4 245 11-279 5-253 (260)
6 d2tpta2 c.27.1.1 (A:71-335) Th 100.0 3.9E-55 2.8E-59 391.5 6.7 248 8-278 5-256 (265)
7 d1byia_ c.37.1.10 (A:) Dethiob 86.3 0.12 8.5E-06 40.6 1.6 36 17-54 6-47 (224)
8 d1j9ia_ a.6.1.5 (A:) Terminase 60.0 2.9 0.00021 27.2 2.6 39 28-66 12-50 (68)
9 d1ihua1 c.37.1.10 (A:1-296) Ar 58.2 2.7 0.0002 33.9 2.9 37 13-51 9-45 (296)
10 d1ihua2 c.37.1.10 (A:308-586) 56.1 2.2 0.00016 34.3 2.0 37 14-52 22-58 (279)
11 d1cp2a_ c.37.1.10 (A:) Nitroge 55.8 2.2 0.00016 34.4 1.8 31 16-48 5-35 (269)
12 d1ls1a2 c.37.1.10 (A:89-295) G 53.3 44 0.0032 25.6 10.3 132 12-159 10-159 (207)
13 d1b0na1 a.34.1.1 (A:74-108) Si 52.8 6.1 0.00045 21.7 2.8 25 248-272 5-29 (35)
14 d1j6ua1 c.5.1.1 (A:0-88) UDP-N 48.3 3.9 0.00028 27.8 1.9 47 15-71 4-50 (89)
15 d1o51a_ d.58.5.4 (A:) Hypothet 46.4 15 0.0011 25.3 4.9 29 135-163 18-47 (102)
16 d1vkma_ c.138.1.1 (A:) Hypothe 32.9 25 0.0018 29.0 4.9 113 20-158 97-222 (292)
17 d2afhe1 c.37.1.10 (E:1-289) Ni 32.8 7.9 0.00058 31.2 1.7 32 17-50 7-38 (289)
18 d2gdta1 d.346.1.1 (A:2-116) Ns 31.6 12 0.00085 25.2 2.1 23 238-260 16-38 (115)
19 d1gmxa_ c.46.1.3 (A:) Sulfurtr 30.9 68 0.005 21.2 7.1 83 72-159 7-91 (108)
20 d1hyqa_ c.37.1.10 (A:) Cell di 30.8 10 0.00075 28.9 2.0 30 19-50 9-38 (232)
21 d1uoua1 a.46.2.1 (A:33-100) Th 30.3 40 0.0029 20.9 4.7 52 204-260 17-68 (68)
22 d1vjra_ c.108.1.14 (A:) Hypoth 29.6 20 0.0015 27.8 3.8 58 14-71 11-68 (261)
23 d2tpta1 a.46.2.1 (A:1-70) Thym 28.0 63 0.0046 19.9 5.6 52 204-260 17-68 (70)
24 d1g3qa_ c.37.1.10 (A:) Cell di 24.5 13 0.00096 28.2 1.6 35 15-51 5-40 (237)
25 d1vkma_ c.138.1.1 (A:) Hypothe 24.2 28 0.0021 28.6 3.7 106 17-129 122-230 (292)
26 d3bula2 c.23.6.1 (A:741-896) M 23.7 49 0.0036 24.2 4.8 59 33-111 25-87 (156)
27 d1kaga_ c.37.1.2 (A:) Shikimat 23.7 24 0.0017 24.4 2.9 28 15-47 5-32 (169)
28 d1rkba_ c.37.1.1 (A:) Adenylat 22.2 20 0.0015 25.4 2.2 26 17-47 9-34 (173)
29 d1tq1a_ c.46.1.3 (A:) Thiosulf 21.9 43 0.0032 22.8 4.0 91 67-159 5-105 (119)
30 d1mv8a2 c.2.1.6 (A:1-202) GDP- 21.5 30 0.0022 26.1 3.2 26 15-47 3-28 (202)
31 d1p3da1 c.5.1.1 (A:11-106) UDP 21.2 35 0.0026 22.8 3.2 49 13-71 9-57 (96)
32 d1j8yf2 c.37.1.10 (F:87-297) G 20.9 1.6E+02 0.012 22.2 10.3 131 13-158 13-162 (211)
33 d2obba1 c.108.1.25 (A:1-122) H 20.7 36 0.0026 23.9 3.2 41 31-71 26-66 (122)
34 d1okkd2 c.37.1.10 (D:97-303) G 20.0 1.7E+02 0.012 22.0 12.5 133 12-158 6-160 (207)
No 1
>d1o17a2 c.27.1.1 (A:71-343) Anthranilate phosphoribosyltransferase (TrpD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=100.00 E-value=4.7e-80 Score=554.60 Aligned_cols=260 Identities=34% Similarity=0.557 Sum_probs=249.6
Q ss_pred CCcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHHHHHHcCeEEEeC
Q 023546 12 GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMS 91 (281)
Q Consensus 12 ~~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~~s~~~a~~~l~~~g~~fl~~ 91 (281)
++.+|+|||||||.+||||||++|+++|++| ||+|||||++|+++||+|+||+|||++++++++++++|++.||+|+|+
T Consensus 2 p~~~D~~GTGgDg~~t~NiSt~~a~v~a~~g-~VaKHGnr~~ssk~GSaDvLe~LGi~~~~~~~~~~~~l~~~g~~FlfA 80 (273)
T d1o17a2 2 PNAIDTAGTGGDGLGTVNVSTASAILLSLVN-PVAKHGNRAVSGKSGSADVLEALGYNIIVPPERAKELVNKTNFVFLFA 80 (273)
T ss_dssp TTCEECCC----CCCBCCHHHHHHHHHTTTS-CEEEEECCCSSSSCSHHHHHHHHTBCCCCCHHHHHHHHHHHSEEEEEH
T ss_pred CCccccCcCCCCCCCCcchhHHHHHHHhcCC-cEEEECCCCCCCCcCHHHHHHHcCCCCCCCHHHHHHHHHHcCceEeec
Confidence 4689999999999999999999999999988 999999999999999999999999999999999999999999999999
Q ss_pred CccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEec-CCccccCcCCc
Q 023546 92 TKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGP 170 (281)
Q Consensus 92 ~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~G-eG~dE~s~~~~ 170 (281)
|.|||+|+++.++|++||+||+||++|||+||+++++||+|||||+|.++|+++++.+|+++++|||| ||+||+|+.++
T Consensus 81 p~~hPamk~v~~vRk~Lg~rTiFN~lgPL~NPa~~~~qliGv~~~~~~~~~a~~l~~lg~~~a~vv~G~dG~DEis~~g~ 160 (273)
T d1o17a2 81 QYYHPAMKNVANVRKTLGIRTIFNILGPLTNPANAKYQLMGVFSKDHLDLLSKSAYELDFNKIILVYGEPGIDEVSPIGN 160 (273)
T ss_dssp HHHCGGGGGTHHHHHHHCSCCGGGGCGGGCCTTCCSEEEEECSSHHHHHHHHHHHTTSCCSEEEEEEETTTBSSCCSSSE
T ss_pred cccChHHHHHHHHHHHcCCCchhhhhhhccCCcCcceeeeccccHHHHHHHHHHHHhhcccceEEecCCccccchhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred eEEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHHccCCCCHHHHHH
Q 023546 171 GLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIADALILNAAAALLVSCKVNTLAEGVA 250 (281)
Q Consensus 171 t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~~~~~~~vl~G~~~~~~~~v~~naa~~L~~~G~~~~~~eg~~ 250 (281)
|.|+++++|++++++++|+|||++..+++++.++++++|++.++++|+|+.++++|+|++|||++||++|+++|++||++
T Consensus 161 t~v~~~~~g~i~~~~i~P~d~Gl~~~~~~~l~gg~~~ena~~i~~il~G~~~~~~d~V~lNAA~aL~~~g~~~sl~eg~~ 240 (273)
T d1o17a2 161 TFMKIVSKRGIEEVKLNVTDFGISPIPIEKLIVNSAEDSAIKIVRAFLGKDEHVAEFIKINTAVALFALDRVGDFREGYE 240 (273)
T ss_dssp EEEEEEETTEEEEEEEEGGGGTCCCCCGGGTBCSSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSSSSHHHHHH
T ss_pred ceeeecccccceeeeeehhhhcccccccccccccCchHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHcCCcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred HHHHHHHccHHHHHHHHHHHHhCC
Q 023546 251 LAREIQLSGKALNTLDLWIEVSKG 274 (281)
Q Consensus 251 ~A~~~l~sG~a~~~l~~~~~~~~~ 274 (281)
+|+++|+| +++||++|++.++.
T Consensus 241 ~A~e~I~s--a~~kL~~li~~s~~ 262 (273)
T d1o17a2 241 YADHLIEK--SLDKLNEIISMNGD 262 (273)
T ss_dssp HHHHHHTT--HHHHHHHHHHHSBC
T ss_pred HHHHHHHH--HHHHHHHHHHHHHH
Confidence 99999986 67899999999875
No 2
>d2elca2 c.27.1.1 (A:66-329) Anthranilate phosphoribosyltransferase (TrpD) {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=6.3e-66 Score=459.53 Aligned_cols=257 Identities=45% Similarity=0.730 Sum_probs=239.0
Q ss_pred CCcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHHHHHHcCeEEEeC
Q 023546 12 GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMS 91 (281)
Q Consensus 12 ~~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~~s~~~a~~~l~~~g~~fl~~ 91 (281)
.++||+|||||||.+|||+||++|+++|++|+||+|||+|++++++|++|+||+||++++.+++++++++++.||+|+++
T Consensus 6 ~~~vD~~gTGGdg~~t~niSt~~a~vlAa~G~~V~khG~r~~~~~~Gs~D~le~lG~~~~~~~~~~~~~l~~~g~~f~~a 85 (264)
T d2elca2 6 RPLLDIVGTGGDGKGLMNLSTLAALVAAAGGVAVAKHGNRAASSRAGSADLLEALGVDLEAPPERVGEAIEELGFGFLFA 85 (264)
T ss_dssp SSEEEEEECCCCSSCCCCCHHHHHHHHHHTTCEEEEEECCCTTTTCSHHHHHHHTTCCTTCCHHHHHHHHHHHSEEEEEH
T ss_pred CCceeecCCCCCCCCCEeehHHHHHHHHhCCCeEEEECCCCCCcccCHHHHHhhccCCcccChHHHHHHHHhccceeeec
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEec-CCccccCcCCc
Q 023546 92 TKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGP 170 (281)
Q Consensus 92 ~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~G-eG~dE~s~~~~ 170 (281)
|.|||++++++++|+++|+||+||+++||+||+++.++++||||+++.+.++++++.++. +.++++| +|.|+.+ ..
T Consensus 86 ~~~~Pa~k~l~~lR~~lg~rt~~n~l~~l~nP~~~~~~~~gv~~~~~~~~~~~~~~~l~~-~~~vv~~~~g~~~~~--~~ 162 (264)
T d2elca2 86 RVFHPAMRHVAPVRAELGVRTVFNLLGPLTNPAGADAYVLGVFSPEWLAPMAEALERLGA-RGLVVHGEGADELVL--GE 162 (264)
T ss_dssp HHHCGGGGGTHHHHHHHCSCCHHHHHTTTCCTTCCCEEEEECSSGGGHHHHHHHHHHTTC-EEEEEEETTBSSCCS--SC
T ss_pred cccCcHHHHHHHHHHHcCcCCchHHHHhhcCcccchhhcccccchhhcchhhhhhhcccc-cceeeeccccccccc--cc
Confidence 999999999999999999999999999999999999999999999999999999999986 6778887 6666654 33
Q ss_pred eEEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCc-chHHHHHHHHHHHHHHHccCCCCHHHHH
Q 023546 171 GLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GAIADALILNAAAALLVSCKVNTLAEGV 249 (281)
Q Consensus 171 t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~~~~~~~vl~G~~-~~~~~~v~~naa~~L~~~G~~~~~~eg~ 249 (281)
+.++.+.. ..+.++|++||++..+++++.+.+++++++.+.++|.|+. ++++|.|++|||++||++|+++|++||+
T Consensus 163 ~~~~~~~~---~~~~i~P~~~g~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~d~v~lnAa~~L~~~G~~~~l~eg~ 239 (264)
T d2elca2 163 NRVVEVGK---GAYALTPEEVGLKRAPLEALKGGGPEENAALARRLLKGEEKGPLADAVALAAGAGFYAAGKTPSLKEGV 239 (264)
T ss_dssp EEEEETTT---EEEEECGGGGTCCCCCGGGGCCCSHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHTTSSSSHHHHH
T ss_pred ceEEEecc---ccccccHHHcCCCCCCHHHccCCChhhhhhhhhhhcccccccHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 44444333 4577899999999988899988899999999999999974 7999999999999999999999999999
Q ss_pred HHHHHHHHccHHHHHHHHHHHHhCC
Q 023546 250 ALAREIQLSGKALNTLDLWIEVSKG 274 (281)
Q Consensus 250 ~~A~~~l~sG~a~~~l~~~~~~~~~ 274 (281)
++|+++|+||+|+++|++|+++++.
T Consensus 240 ~~a~~~I~sG~A~~~l~~~i~~~~~ 264 (264)
T d2elca2 240 ALAREVLASGEAYLLLERYVAFLRA 264 (264)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999998763
No 3
>d1khda2 c.27.1.1 (A:81-344) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]}
Probab=100.00 E-value=1.3e-65 Score=457.85 Aligned_cols=258 Identities=40% Similarity=0.682 Sum_probs=241.6
Q ss_pred CCcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCccc-HHHHHHHcCCCCCCCHHHHHHHHHHcCeEEEe
Q 023546 12 GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACG-SADVLEALGVVIDLDPEGVRRCVDEAGIGFMM 90 (281)
Q Consensus 12 ~~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~g-s~dvLe~LGi~~~~s~~~a~~~l~~~g~~fl~ 90 (281)
.+.+|+|||||||.+|||+||++|+++|++|+||+|||+|++++++| +.|+++.+|++++++++++++++++.||+|++
T Consensus 4 ~~~~D~~gTGGdg~~t~niS~~~a~ilAa~G~~V~khG~r~~~s~~g~~~dl~~~~G~~~~~s~~~~~~~l~~~g~~f~~ 83 (264)
T d1khda2 4 YDFADIVGTGGDGTNSINISTASAFVAASCGAKVAKHGNRSVCQPLAGSCDLLQAFGIRLDMSAEDSRQALDDLNVCFLF 83 (264)
T ss_dssp SCCEEEEECCCCSSCBCCCHHHHHHHHHHHTCCEEEEECC---------CHHHHHTTCCTTCCHHHHHHHHHHHSEEEEE
T ss_pred CCcccccCCCCCCCCCEeehHHHHHHHHhCCCcEEeECCCCCCCCCcHHHHHHHccCCcccchHHHHHHHHHhcCceeeh
Confidence 47899999999999999999999999999999999999999999865 78999999999999999999999999999999
Q ss_pred CCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEecCCccccCcCCc
Q 023546 91 STKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGP 170 (281)
Q Consensus 91 ~~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~GeG~dE~s~~~~ 170 (281)
+|.|||+++.++++|+++|+||+||+++||+||.++.++++||+|+++...++++++.+|.++++|++|||+||+++.++
T Consensus 84 a~~~~pa~~~l~~~R~~lg~rt~~n~l~~l~np~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~~~vv~g~G~de~s~~~~ 163 (264)
T d1khda2 84 APQYHTGFRHAMPVRQQLKTRTIFNVLGPLINPARPPKALIGVYSPELVLPIAQALKVLGYKNAAVVHGGGMDEVAIHTP 163 (264)
T ss_dssp HHHHCGGGGGGHHHHHHHCSCCTHHHHGGGCCTTCCSEEEEECSSGGGHHHHHHHHHHTTCSEEEEEEETTBSSCCSSSC
T ss_pred hhhcchhhhhhhhhheeccccccccchhhhcCcccchhhhheecChhhhhhHHHHhhcccccccceeecccceeccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCc-chHHHHHHHHHHHHHHHccCCCCHHHHH
Q 023546 171 GLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GAIADALILNAAAALLVSCKVNTLAEGV 249 (281)
Q Consensus 171 t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~~~~~~~vl~G~~-~~~~~~v~~naa~~L~~~G~~~~~~eg~ 249 (281)
++++++.++.+..+.++|+++|++.....++.+.+++++++.+..+|+|+. .++.+.|++|||++||+.| ++|++||+
T Consensus 164 ~~v~~l~~~~~~~~~i~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~g~~~~~~~~~v~lnAa~~L~~~g-~~s~~eg~ 242 (264)
T d1khda2 164 TQVAELNNGEIESYQLSPQDFGLQSYSLNALQGGTPEENRDILARLLQGKGDAAHARQVAANVALLLKLFG-QDNLRHNA 242 (264)
T ss_dssp EEEEEEETTEEEEEEECGGGGTCCCBCGGGGBCCSHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTTT-CCCHHHHH
T ss_pred cEEEEEeccccceeEEecccccccccccccccCCCHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHcC-CCCHHHHH
Confidence 999999999999999999999999887778888899999999999999996 5678999999999999998 58999999
Q ss_pred HHHHHHHHccHHHHHHHHHHH
Q 023546 250 ALAREIQLSGKALNTLDLWIE 270 (281)
Q Consensus 250 ~~A~~~l~sG~a~~~l~~~~~ 270 (281)
++|+++|+||+|++||++|+.
T Consensus 243 ~~A~~~i~sG~A~~kl~~lvA 263 (264)
T d1khda2 243 QLALETIRSGTAFERVTALAA 263 (264)
T ss_dssp HHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHhCcHHHHHHHHHhc
Confidence 999999999999999999974
No 4
>d1uoua2 c.27.1.1 (A:101-373) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=1.2e-58 Score=415.95 Aligned_cols=245 Identities=20% Similarity=0.225 Sum_probs=220.9
Q ss_pred CCcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHc-CCCCCCCHHHHHHHHHHcCeEEEe
Q 023546 12 GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDPEGVRRCVDEAGIGFMM 90 (281)
Q Consensus 12 ~~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~L-Gi~~~~s~~~a~~~l~~~g~~fl~ 90 (281)
+++||+|||||||. |+||++|+|+|++|+||+|||||++||++||+|+||+| ||+++++++++++++++.||+|++
T Consensus 10 ~~~iD~~GTGGdG~---ntST~~a~VaAa~Gv~VaKHGNRsiSS~sGSADvLEaL~Gv~i~~~~e~~~~~l~~~g~~F~f 86 (273)
T d1uoua2 10 QQLVDKHSTGGVGD---KVSLVLAPALAACGCKVPMISGRGLGHTGGTLDKLESIPGFNVIQSPEQMQVLLDQAGCCIVG 86 (273)
T ss_dssp GGBEEEEESCCTTC---CHHHHHHHHHHTTTCBEEEECCCCBTTBCCHHHHHTTSTTCCCCCCHHHHHHHHHHHSEEEEC
T ss_pred CCeEeecCCCCCCc---hHHHHHHHHHHhCCCccccccCCccCCCCchHHHHHhccCCccCCCHHHHHHHHHhcceeEee
Confidence 67999999999998 56999999999999999999999999999999999999 999999999999999999999999
Q ss_pred CCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEec-CCccccCcCC
Q 023546 91 STKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLG 169 (281)
Q Consensus 91 ~~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~G-eG~dE~s~~~ 169 (281)
+|.|||++. ||+||.++||+||..++.|++|||++++...+++++..+|..++++++| ||+||+++..
T Consensus 87 ap~~h~~~~-----------rtifn~lgpl~np~~~~~~~~gv~~~~~~~~~a~~l~~~~~~~~~vv~g~dgldeis~~~ 155 (273)
T d1uoua2 87 QSEQLVPAD-----------GILYAARDVTATVDSLPLITASILSKKLVEGLSALVVDVKFGGAAVFPNQEQARELAKTL 155 (273)
T ss_dssp CCSSSSHHH-----------HHHHHHHHHTTCSSCHHHHHHHHHHHHHHTTCSEEEEEEEEC--CCCCSHHHHHHHHHHH
T ss_pred cccccchHH-----------hHhhhhccccccccchhhHhhhccChhhhhhHHHHHHhcCCccEEEEecchhhHHHhCcc
Confidence 999999874 6899999999999999999999999999999999999999999999999 9999999999
Q ss_pred ceEEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCc-chHHHHHHHHHHHHHHHccCCCCHHHH
Q 023546 170 PGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GAIADALILNAAAALLVSCKVNTLAEG 248 (281)
Q Consensus 170 ~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~~~~~~~vl~G~~-~~~~~~v~~naa~~L~~~G~~~~~~eg 248 (281)
.+.++++.++.+..++..++.++. ......+.+.+..++.|+. ++.+|+|++|||.+||++|+++|++||
T Consensus 156 ~~~~~~~~~~~~~~~t~~~~~~~~---------~~~~~~e~~~~~~~l~g~~~~~~~d~vllNAAa~L~vag~a~sl~eG 226 (273)
T d1uoua2 156 VGVGASLGLRVAAALTAMDKPLGR---------CVGHALEVEEALLCMDGAGPPDLRDLVTTLGGALLWLSGHAGTQAQG 226 (273)
T ss_dssp HHHHHHTTCCEEEEEEECSSCSTT---------EESSHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTSCSSHHHH
T ss_pred ceeeeecCCceEEEecCchhhhcc---------ccCcHHHHhhHHHHHcCCCcchHHHHHHHHHHHHHHHhCcCCCHHHH
Confidence 999888888877666555544332 1223455667788999986 678899999999999999999999999
Q ss_pred HHHHHHHHHccHHHHHHHHHHHHhCCCCCCc
Q 023546 249 VALAREIQLSGKALNTLDLWIEVSKGAPAFA 279 (281)
Q Consensus 249 ~~~A~~~l~sG~a~~~l~~~~~~~~~~~~~~ 279 (281)
+++|+++|+||+|++||++|+++|++++.|.
T Consensus 227 v~lA~eaI~SGkAl~kLe~lI~Aqgg~~~~~ 257 (273)
T d1uoua2 227 AARVAAALDDGSALGRFERMLAAQGVDPGLA 257 (273)
T ss_dssp HHHHHHHHHSSHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999999999999998774
No 5
>d1brwa2 c.27.1.1 (A:71-330) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=100.00 E-value=2.8e-57 Score=404.30 Aligned_cols=245 Identities=17% Similarity=0.228 Sum_probs=218.3
Q ss_pred CCCcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHc-CCCCCCCHHHHHHHHHHcCeEEE
Q 023546 11 LGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDPEGVRRCVDEAGIGFM 89 (281)
Q Consensus 11 ~~~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~L-Gi~~~~s~~~a~~~l~~~g~~fl 89 (281)
++..+|+|||||||. |+||++|+|+|++|+||+|||||++||++||+|+||+| ||+++.++|++++++++.||+|+
T Consensus 5 ~g~~vD~cGTGGdG~---niST~~a~V~AaaGv~VaKHGNRsvSSksGSADvLEaL~Gv~i~~~~e~~~~~l~e~g~~Fl 81 (260)
T d1brwa2 5 RGVKVDKHSTGGVGD---TTTLVLGPLVASVGVPVAKMSGRGLGHTGGTIDKLESVPGFHVEISKDEFIRLVNENGIAII 81 (260)
T ss_dssp CSCCEEEEECCCSSC---CHHHHHHHHHHTTTCCEEEEECCCBTTBCCHHHHHTTSTTCCCCCCHHHHHHHHHHHSEEEE
T ss_pred CCCeeeeeCCCCCCc---hHHHHHHHHHHhCCCccccccCCccCCCCchHHHHHhccCCCCCCCHHHHHHHHHhcCceee
Confidence 356899999999998 57999999999999999999999999999999999999 99999999999999999999999
Q ss_pred -eCCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEec-CCccccCc
Q 023546 90 -MSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSP 167 (281)
Q Consensus 90 -~~~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~G-eG~dE~s~ 167 (281)
++|.|||+|+++.++|++++.||+||.++|++||.....++.+++.. ++..++++|+| ||.||++.
T Consensus 82 ~~a~~~hpa~~~~~~~rr~l~~~t~~~~l~p~~~p~~~~~~~~~v~~~------------~~~~~~~~v~~~~g~de~s~ 149 (260)
T d1brwa2 82 GQTGDLTPADKKLYALRDVTATVNSIPLIASSIMSKKIAAGADAIVLD------------VKTGAGAFMKKLDEARRLAR 149 (260)
T ss_dssp ECCTTSCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHCCSEEEEE------------EEESTTSSCCSHHHHHHHHH
T ss_pred ccCcccCcHHhhhhhhhhccCcccchhhhcccccCchhhhchhhhhhh------------cCccceEEEcChHHHHHHhh
Confidence 89999999999999999999999999999999998877888888753 34557778888 99999998
Q ss_pred CCceEEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCc-chHHHHHHHHHHHHHHHccCCCCHH
Q 023546 168 LGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GAIADALILNAAAALLVSCKVNTLA 246 (281)
Q Consensus 168 ~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~~~~~~~vl~G~~-~~~~~~v~~naa~~L~~~G~~~~~~ 246 (281)
...+.++++ ++...+.++|.++|+.... .+ ..+...+.++|.|+. ++++|+|++|||.+||++|+++|++
T Consensus 150 ~~~~~~~~~--~~~~~~~~t~~~~~l~~~~------~~-~~e~~~~~~iL~g~~~~~~~d~vllNAaaaL~vag~a~sl~ 220 (260)
T d1brwa2 150 VMVDIGKRV--GRRTMAVISDMSQPLGYAV------GN-ALEVKEAIETLKGNGPHDLTELCLTLGSHMVYLAEKAPSLD 220 (260)
T ss_dssp HHHHHHHHT--TCEEEEEEEECSSCSSSEE------SS-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHTTSSSSHH
T ss_pred hcchheeec--CCceEEEeccchhhhcccc------cc-hHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHcCcCCCHH
Confidence 888876554 3456778899999886532 22 334445678999875 6889999999999999999999999
Q ss_pred HHHHHHHHHHHccHHHHHHHHHHHHhCCCCCCc
Q 023546 247 EGVALAREIQLSGKALNTLDLWIEVSKGAPAFA 279 (281)
Q Consensus 247 eg~~~A~~~l~sG~a~~~l~~~~~~~~~~~~~~ 279 (281)
||+++|+++|+||+|++||++|+++|++|+-|.
T Consensus 221 egv~~A~e~I~SG~A~~kL~~lI~aqgg~~~~~ 253 (260)
T d1brwa2 221 EARRLLEEAIRSGAAIAAFKTFLAAQGGDASVV 253 (260)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHTTCCGGGT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhCCChHHh
Confidence 999999999999999999999999999998774
No 6
>d2tpta2 c.27.1.1 (A:71-335) Thymidine phosphorylase {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=3.9e-55 Score=391.49 Aligned_cols=248 Identities=17% Similarity=0.173 Sum_probs=210.3
Q ss_pred ccCCCCcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHc-CCCCCCCHHHHHHHHHHcCe
Q 023546 8 VEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDPEGVRRCVDEAGI 86 (281)
Q Consensus 8 ~~~~~~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~L-Gi~~~~s~~~a~~~l~~~g~ 86 (281)
++...++||+|||||||. |+||++|+|+|++|+||+|||||++||++||+|+||+| |++++.+++++.+++++.||
T Consensus 5 ~~~~~p~vD~cGTGGDG~---ntST~~a~V~Aa~Gv~VaKHGNRsvSS~sGSADvLEaL~Gv~i~~~~e~~~~~l~~~g~ 81 (265)
T d2tpta2 5 LHLNGPIVDKHSTGGVGD---VTSLMLGPMVAACGGYIPMISGRGLGHTGGTLDKLESIPGFDIFPDDNRFREIIKDVGV 81 (265)
T ss_dssp TTCSSCBEEEEECCCSSC---CHHHHHHHHHHHTTCBEEEEECCCCTTSCCHHHHHTTSTTCCSCCCHHHHHHHHHHTSE
T ss_pred ccCCCCeeeeeCCCCCCh---hHHHHHHHHHHhCCCceecccCCCCCCCCchHHHHHhccCCCcCCCHHHHHHHHHhhhh
Confidence 445567999999999998 56999999999999999999999999999999999999 99999999999999999999
Q ss_pred EEE-eCCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEec-CCccc
Q 023546 87 GFM-MSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDE 164 (281)
Q Consensus 87 ~fl-~~~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~G-eG~dE 164 (281)
+|+ ++|.|||+|+++.++|+.++.||+||.+++++||.....++.++ +..++..++++++| +|+||
T Consensus 82 ~Fl~~a~~~hpa~~~v~~vr~~l~~~t~~n~~~~~v~~~~~~~~~~~~------------l~~~~~~~~~vv~~~d~~de 149 (265)
T d2tpta2 82 AIIGQTSSLAPADKRFYATRDITATVDSIPLITASILAKKLAEGLDAL------------VMDVKVGSGAFMPTYELSEA 149 (265)
T ss_dssp EEEECCTTBSHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCCSEE------------EEEEEESTTSSSSSHHHHHH
T ss_pred hhcccccccchHHHHHHHHhhccccccccccccccccChHHHhHHHHH------------HHhcCCcceEEEechhhhHH
Confidence 999 89999999999999999999999999999988885444444444 33466677888898 99999
Q ss_pred cCcCCceEEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCcc-hHHHHHHHHHHHHHHHccCCC
Q 023546 165 MSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERG-AIADALILNAAAALLVSCKVN 243 (281)
Q Consensus 165 ~s~~~~t~v~~~~~g~i~~~~~~p~~~gl~~~~~~~~~~~~~~~~~~~~~~vl~G~~~-~~~~~v~~naa~~L~~~G~~~ 243 (281)
++....+.++++..+.+..++..|.+++. ...+++++.+.++.+..++.+ +.+|+|++|||.+||+.|+++
T Consensus 150 ~s~~~~~~~~~~~~~~~~~~t~~~~~l~~--------~~~~~~e~~~~~~~L~~~~~~~~~~d~v~lnaa~~L~~~g~~~ 221 (265)
T d2tpta2 150 LAEAIVGVANGAGVRTTALLTDMNQVLAS--------SAGNAVEVREAVQFLTGEYRNPRLFDVTMALCVEMLISGKLAK 221 (265)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECSSCSSS--------CEESHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTSCS
T ss_pred HHHhcchhhhhcCCceEEEEeeChHHhcc--------ccCCHHHHHHHHHHHHcccCChHHHHHHHHHHHHHHHHcCCCC
Confidence 99999888877666655555544444332 124566666555444444444 467999999999999999999
Q ss_pred CHHHHHHHHHHHHHccHHHHHHHHHHHHhCCCCCC
Q 023546 244 TLAEGVALAREIQLSGKALNTLDLWIEVSKGAPAF 278 (281)
Q Consensus 244 ~~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~~~~~ 278 (281)
|++||+++|+++|+||+|++||++|+++|++++-|
T Consensus 222 ~~~eg~~~A~e~I~SG~A~~kl~~~I~aqgg~~~~ 256 (265)
T d2tpta2 222 DDAEARAKLQAVLDNGKAAEVFGRMVAAQKGPTDF 256 (265)
T ss_dssp SHHHHHHHHHHHHHTSHHHHHHHHHHHHTTCCTTH
T ss_pred CHHHHHHHHHHHHHCCHHHHHHHHHHHHhCCCcHH
Confidence 99999999999999999999999999999999976
No 7
>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}
Probab=86.28 E-value=0.12 Score=40.57 Aligned_cols=36 Identities=28% Similarity=0.326 Sum_probs=29.6
Q ss_pred EecCC-CCCCCCccchHHHHHHHHcCCCcEEe-----eCCCCCC
Q 023546 17 IVGTG-GDGANTVNISTGASILAAACGAKVAK-----QGSRSSS 54 (281)
Q Consensus 17 i~gtg-gdG~~t~nis~~aa~vlA~~G~~V~~-----HG~~~~~ 54 (281)
|+||| |.|++| +|...|..+|+.|++|+. .|+....
T Consensus 6 i~gt~~GVGKTt--vs~~La~aLa~~G~rVl~id~d~~g~~~~~ 47 (224)
T d1byia_ 6 VTGTDTEVGKTV--ASCALLQAAKAAGYRTAGYKPVASGSEKTP 47 (224)
T ss_dssp EEESSTTSCHHH--HHHHHHHHHHHTTCCEEEECSEEESCBCCT
T ss_pred EEECCCCccHHH--HHHHHHHHHHHCCCeEEEECccccCCCCCC
Confidence 78998 999997 688899999999999986 4655543
No 8
>d1j9ia_ a.6.1.5 (A:) Terminase gpNU1 subunit domain {Bacteriophage lambda [TaxId: 10710]}
Probab=59.97 E-value=2.9 Score=27.22 Aligned_cols=39 Identities=18% Similarity=0.121 Sum_probs=31.1
Q ss_pred ccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHc
Q 023546 28 VNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL 66 (281)
Q Consensus 28 ~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~L 66 (281)
|.+|+-..=--.+.|.||+..|+++......++++..=|
T Consensus 12 FGVS~~TI~~W~~~G~Pv~~~Gg~G~~~~fdt~~v~~Wl 50 (68)
T d1j9ia_ 12 FGASIRTIQNWQEQGMPVLRGGGKGNEVLYDSAAVIKWY 50 (68)
T ss_dssp TTCCHHHHHHHTTTTCCCSSCCCSSSCCEEEHHHHHHHH
T ss_pred hCCCHHHHHHHHHCCCCeecCCCCCcceeecHHHHHHHH
Confidence 455555544456789999999999999999999988776
No 9
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}
Probab=58.24 E-value=2.7 Score=33.88 Aligned_cols=37 Identities=27% Similarity=0.346 Sum_probs=30.3
Q ss_pred CcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCC
Q 023546 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSR 51 (281)
Q Consensus 13 ~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~ 51 (281)
..+=+.|=||.||+| ++...|..+|+.|.+|+.-..+
T Consensus 9 ~~i~~sGKGGVGKTT--vaa~lA~~lA~~G~rVLlvD~D 45 (296)
T d1ihua1 9 PYLFFTGKGGVGKTS--ISCATAIRLAEQGKRVLLVSTD 45 (296)
T ss_dssp SEEEEECSTTSSHHH--HHHHHHHHHHHTTCCEEEEECC
T ss_pred eEEEEECCCcChHHH--HHHHHHHHHHHCCCCEEEEeCC
Confidence 344478999999997 6888899999999999987655
No 10
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}
Probab=56.13 E-value=2.2 Score=34.33 Aligned_cols=37 Identities=24% Similarity=0.379 Sum_probs=29.5
Q ss_pred cceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCC
Q 023546 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRS 52 (281)
Q Consensus 14 ~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~ 52 (281)
++=++|=||.|++| ++..+|..+|+.|.+|+.--.+.
T Consensus 22 iii~sGKGGVGKTT--~a~nLA~~lA~~G~rVllvD~Dp 58 (279)
T d1ihua2 22 LIMLMGKGGVGKTT--MAAAIAVRLADMGFDVHLTTSDP 58 (279)
T ss_dssp EEEEECSTTSSHHH--HHHHHHHHHHHTTCCEEEEESCC
T ss_pred EEEEECCCCCCHHH--HHHHHHHHHHHCCCcEEEEeCCC
Confidence 45467999999986 57778888899999999866663
No 11
>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}
Probab=55.78 E-value=2.2 Score=34.36 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=24.6
Q ss_pred eEecCCCCCCCCccchHHHHHHHHcCCCcEEee
Q 023546 16 DIVGTGGDGANTVNISTGASILAAACGAKVAKQ 48 (281)
Q Consensus 16 Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~H 48 (281)
=|+|-||.|++| ++.-.|..+|+.|.+|+.-
T Consensus 5 ai~gKGGvGKTT--~a~nLA~~LA~~G~rVllI 35 (269)
T d1cp2a_ 5 AIYGKGGIGKST--TTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEECTTSSHHH--HHHHHHHHHHTTTCCEEEE
T ss_pred EEECCCcCCHHH--HHHHHHHHHHhCCCcEEEE
Confidence 367999999986 4555677789999999864
No 12
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=53.34 E-value=44 Score=25.60 Aligned_cols=132 Identities=14% Similarity=0.219 Sum_probs=72.9
Q ss_pred CCcceEecCCCCCCCCccchHH-HHHHHHcCCCcEEeeCCCCCCCcccHHH----HHHHcCCCCC-----CCHHHHH---
Q 023546 12 GDAVDIVGTGGDGANTVNISTG-ASILAAACGAKVAKQGSRSSSSACGSAD----VLEALGVVID-----LDPEGVR--- 78 (281)
Q Consensus 12 ~~~~Di~gtggdG~~t~nis~~-aa~vlA~~G~~V~~HG~~~~~~~~gs~d----vLe~LGi~~~-----~s~~~a~--- 78 (281)
..++=.+|..|.|+.| +.+ .|..++..|.+|..-..+ +.|.|..+ .-+.+|+++. .+++++.
T Consensus 10 ~~vi~lvGp~GvGKTT---TiaKLA~~~~~~g~kV~lit~D--t~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~ 84 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTT---TAAKLALYYKGKGRRPLLVAAD--TQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRV 84 (207)
T ss_dssp SEEEEEECCTTTTHHH---HHHHHHHHHHHTTCCEEEEECC--SSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHH
T ss_pred CcEEEEECCCCCCHHH---HHHHHHHHHHHCCCcEEEEecc--cccchHHHHHHHHHHhcCCccccccccchhhHHHHHH
Confidence 4556679999999953 221 233344567777755443 35666544 4455688744 2344442
Q ss_pred ---HHHHHcCeEEEeCCccChhhhchH-HHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHH-HHcCCCe
Q 023546 79 ---RCVDEAGIGFMMSTKYHPAMKFVR-PVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANAL-QRFGLKR 153 (281)
Q Consensus 79 ---~~l~~~g~~fl~~~~~~P~l~~l~-~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~-~~lg~~~ 153 (281)
..+++..+.+++.+-.+|.-..++ .+++ +.+. .+|- -.+.|+.-..+.-....++.+ +.++.+.
T Consensus 85 ~~~~~~~~~d~vlIDTaGr~~~d~~~~~el~~------~~~~----~~~~-~~llv~~a~~~~~~~~~~~~f~~~~~~~~ 153 (207)
T d1ls1a2 85 EEKARLEARDLILVDTAGRLQIDEPLMGELAR------LKEV----LGPD-EVLLVLDAMTGQEALSVARAFDEKVGVTG 153 (207)
T ss_dssp HHHHHHHTCCEEEEECCCCSSCCHHHHHHHHH------HHHH----HCCS-EEEEEEEGGGTHHHHHHHHHHHHHTCCCE
T ss_pred HHHHhhccCcceeecccccchhhhhhHHHHHH------HHhh----cCCc-eEEEEeccccchhHHHHHHHHHhhCCCCe
Confidence 235667899999877666544332 2222 2222 2332 223444444444444444444 5689988
Q ss_pred EEEEec
Q 023546 154 ALVVHS 159 (281)
Q Consensus 154 ~lvv~G 159 (281)
.++-|=
T Consensus 154 ~I~TKl 159 (207)
T d1ls1a2 154 LVLTKL 159 (207)
T ss_dssp EEEECG
T ss_pred eEEeec
Confidence 777773
No 13
>d1b0na1 a.34.1.1 (A:74-108) SinR repressor dimerisation domain {Bacillus subtilis [TaxId: 1423]}
Probab=52.77 E-value=6.1 Score=21.66 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=21.9
Q ss_pred HHHHHHHHHHccHHHHHHHHHHHHh
Q 023546 248 GVALAREIQLSGKALNTLDLWIEVS 272 (281)
Q Consensus 248 g~~~A~~~l~sG~a~~~l~~~~~~~ 272 (281)
=..+.+++..||-..++|+++++++
T Consensus 5 W~~lVkeAM~SGvSK~QFrEflef~ 29 (35)
T d1b0na1 5 WEKLVRDAMTSGVSKKQFREFLDYQ 29 (35)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHH
Confidence 3467899999999999999999876
No 14
>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}
Probab=48.32 E-value=3.9 Score=27.80 Aligned_cols=47 Identities=28% Similarity=0.416 Sum_probs=32.6
Q ss_pred ceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCC
Q 023546 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID 71 (281)
Q Consensus 15 ~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~ 71 (281)
+-++|-||-|.. .+|.+|.+.|+.|. |++... .-..+-|+++|+++.
T Consensus 4 ihfiGIgG~GMs------~LA~~L~~~G~~Vs--GSD~~~--~~~t~~L~~~Gi~i~ 50 (89)
T d1j6ua1 4 IHFVGIGGIGMS------AVALHEFSNGNDVY--GSNIEE--TERTAYLRKLGIPIF 50 (89)
T ss_dssp EEEETTTSHHHH------HHHHHHHHTTCEEE--EECSSC--CHHHHHHHHTTCCEE
T ss_pred EEEEeECHHHHH------HHHHHHHhCCCeEE--EEeCCC--ChhHHHHHHCCCeEE
Confidence 446777776652 35999999999998 665432 224445999998874
No 15
>d1o51a_ d.58.5.4 (A:) Hypothetical protein TM0021 {Thermotoga maritima [TaxId: 2336]}
Probab=46.41 E-value=15 Score=25.31 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=25.6
Q ss_pred ChhhHHHHHHHHHHcCCCeEEEEec-CCcc
Q 023546 135 NENLVLKMANALQRFGLKRALVVHS-EGLD 163 (281)
Q Consensus 135 h~~~~~~~~~~~~~lg~~~~lvv~G-eG~d 163 (281)
++++.+.+.+.++..|...+.|++| +|+-
T Consensus 18 g~pl~~~iv~~ar~~giaGaTv~rgi~GfG 47 (102)
T d1o51a_ 18 GKPLFEYLVKRAYELGMKGVTVYRGIMGFG 47 (102)
T ss_dssp TEEHHHHHHHHHHHTTCSCCEEEECSCCCC
T ss_pred ceEHHHHHHHHHHHCCCCcEEEEeeeeeeC
Confidence 5678888999999999999999999 8864
No 16
>d1vkma_ c.138.1.1 (A:) Hypothetical protein TM1464 {Thermotoga maritima [TaxId: 2336]}
Probab=32.86 E-value=25 Score=28.97 Aligned_cols=113 Identities=24% Similarity=0.311 Sum_probs=72.8
Q ss_pred CCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCc-cc--HHHHHHHc---------CCCCCCCHHHHHHHHHHcCeE
Q 023546 20 TGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSA-CG--SADVLEAL---------GVVIDLDPEGVRRCVDEAGIG 87 (281)
Q Consensus 20 tggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~-~g--s~dvLe~L---------Gi~~~~s~~~a~~~l~~~g~~ 87 (281)
.|.+|..| -.+.++++..+|++|+-.|+=+--++ .. |+|+-+-= |+..=++....-+.||..|+.
T Consensus 97 ~~~~gaTT---VsaTm~iA~~aGI~VFaTGGIGGVHr~s~DiSaDL~eL~~tpv~vVcaG~KsiLDi~~TlE~LET~gV~ 173 (292)
T d1vkma_ 97 EGKNAATT---VSATIFLSRRIGIEVVVTGGTGGVHPGRVDVSQDLTEMSSSRAVLVSSGIKSILDVEATFEMLETLEIP 173 (292)
T ss_dssp HTCCEEEC---HHHHHHHHHHHTCCEEECSCBCCBCTTSSCBCHHHHHHTTCCEEEEESBBCTTSCHHHHHHHHHHTTCC
T ss_pred cccccccc---HHHHHHHHHhCCCeEEEecCcccccCCCccccccHhhHhcCCeEEEecccHhhcccHHHHHHHHhcCee
Confidence 46666654 23455666777999998877553233 22 78876642 445457889999999999988
Q ss_pred EE-eCCccChhhhchHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEe
Q 023546 88 FM-MSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH 158 (281)
Q Consensus 88 fl-~~~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~ 158 (281)
.+ |....+|+++. +.=|++ .+ .+.++.-...+.++-+.+|....++|-
T Consensus 174 Vvgy~t~~fPaF~~-----~~Sg~~--------------~~----~v~~~~eiA~i~~~~~~lgl~~giLva 222 (292)
T d1vkma_ 174 LVGFRTNEFPLFFS-----RKSGRR--------------VP----RIENVEEVLKIYESMKEMELEKTLMVL 222 (292)
T ss_dssp EEEESCSBCCBTTB-----SCCSCB--------------CC----EECSHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EEeecCCcccceee-----cCCCCC--------------CC----CcCCHHHHHHHHHHHHHcCCCceEEEE
Confidence 77 44788888742 111211 11 356666666667777788877776655
No 17
>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}
Probab=32.80 E-value=7.9 Score=31.17 Aligned_cols=32 Identities=34% Similarity=0.430 Sum_probs=24.2
Q ss_pred EecCCCCCCCCccchHHHHHHHHcCCCcEEeeCC
Q 023546 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGS 50 (281)
Q Consensus 17 i~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~ 50 (281)
|.|=||.|+.| ++.-.|..||..|.+|+.---
T Consensus 7 isgKGGVGKTT--~a~NLA~~LA~~G~rVLlID~ 38 (289)
T d2afhe1 7 IYGKGGIGKST--TTQNLVAALAEMGKKVMIVGC 38 (289)
T ss_dssp EEECTTSSHHH--HHHHHHHHHHHTTCCEEEEEE
T ss_pred EECCCCCCHHH--HHHHHHHHHHHCCCCEEEEec
Confidence 46789999986 455567778899999996543
No 18
>d2gdta1 d.346.1.1 (A:2-116) Nsp1 {SARS coronavirus [TaxId: 227859]}
Probab=31.58 E-value=12 Score=25.16 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=19.5
Q ss_pred HccCCCCHHHHHHHHHHHHHccH
Q 023546 238 VSCKVNTLAEGVALAREIQLSGK 260 (281)
Q Consensus 238 ~~G~~~~~~eg~~~A~~~l~sG~ 260 (281)
+.|-.+|.+|++..|++.++.|.
T Consensus 16 vrgfgdsveealsearehlkngt 38 (115)
T d2gdta1 16 VRGFGDSVEEALSEAREHLKNGT 38 (115)
T ss_dssp CCCSCSSHHHHHHHHHHHHHHTC
T ss_pred hhccchhHHHHHHHHHHHhhCCc
Confidence 34667899999999999999874
No 19
>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]}
Probab=30.87 E-value=68 Score=21.22 Aligned_cols=83 Identities=12% Similarity=0.119 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHcCeEEEeCCccChhhhchHHHHhhhCCCChhhhhhhccCCC--CCCceEEeeeChhhHHHHHHHHHHc
Q 023546 72 LDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPA--CVPFAVVGVYNENLVLKMANALQRF 149 (281)
Q Consensus 72 ~s~~~a~~~l~~~g~~fl~~~~~~P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~--~~~~~v~Gv~h~~~~~~~~~~~~~l 149 (281)
.|++++.+.+++.+..+++...-. -..-..+..-+- -+...+...++.. +.+..+.. .+-.-....++.++..
T Consensus 7 Is~~e~~~~l~~~~~~liDvR~~~--e~~~ghI~gA~~--ip~~~l~~~~~~~~~~~~ivv~c-~~g~rs~~~a~~L~~~ 81 (108)
T d1gmxa_ 7 INVADAHQKLQEKEAVLVDIRDPQ--SFAMGHAVQAFH--LTNDTLGAFMRDNDFDTPVMVMC-YHGNSSKGAAQYLLQQ 81 (108)
T ss_dssp ECHHHHHHHHHTTCCEEEECSCHH--HHHHCEETTCEE--CCHHHHHHHHHHSCTTSCEEEEC-SSSSHHHHHHHHHHHH
T ss_pred eCHHHHHHHHHCCCeEEEECCCHH--HHHhcCCCCccc--ccchhHHHHhhhccccCcccccC-CCChHHHHHHHHHHHc
Confidence 578999999999888888875211 000000000000 0122222222222 33444444 3445577788889999
Q ss_pred CCCeEEEEec
Q 023546 150 GLKRALVVHS 159 (281)
Q Consensus 150 g~~~~lvv~G 159 (281)
|++++.+++|
T Consensus 82 G~~~v~~l~G 91 (108)
T d1gmxa_ 82 GYDVVYSIDG 91 (108)
T ss_dssp TCSSEEEETT
T ss_pred CCCCEEEEcC
Confidence 9988888876
No 20
>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=30.80 E-value=10 Score=28.93 Aligned_cols=30 Identities=30% Similarity=0.491 Sum_probs=24.2
Q ss_pred cCCCCCCCCccchHHHHHHHHcCCCcEEeeCC
Q 023546 19 GTGGDGANTVNISTGASILAAACGAKVAKQGS 50 (281)
Q Consensus 19 gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~ 50 (281)
+-||.|++| ++.-.|..+|..|.+|+.-.-
T Consensus 9 ~KGGvGKTt--ia~nlA~~la~~g~~VlliD~ 38 (232)
T d1hyqa_ 9 GKGGTGKTT--ITANLGVALAQLGHDVTIVDA 38 (232)
T ss_dssp SSSCSCHHH--HHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCChHHH--HHHHHHHHHHhCCCCEEEEeC
Confidence 669999987 566778888999999987543
No 21
>d1uoua1 a.46.2.1 (A:33-100) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.31 E-value=40 Score=20.90 Aligned_cols=52 Identities=19% Similarity=0.153 Sum_probs=35.1
Q ss_pred CChHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHccH
Q 023546 204 GGPAYNAEVLRRVLSGERGAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGK 260 (281)
Q Consensus 204 ~~~~~~~~~~~~vl~G~~~~~~~~v~~naa~~L~~~G~~~~~~eg~~~A~~~l~sG~ 260 (281)
.+.++....+..+++|+-++. + +..--.+++.-| .+.+|-...++...+||+
T Consensus 17 Ls~~E~~~~~~~i~~g~~s~~-q--i~afL~al~~kG--~t~~Ei~~~t~aM~~sGe 68 (68)
T d1uoua1 17 LSEADIRGFVAAVVNGSAQGA-Q--IGAMLMAIRLRG--MDLEETSVLTQALAQSGQ 68 (68)
T ss_dssp CCHHHHHHHHHHHHHTCSCHH-H--HHHHHHHHHHHC--CCHHHHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHHHHHcCCCCHH-H--HHHHHHHHHHcC--CCHHHHHHHHHHHHHhCc
Confidence 367777888999999987433 1 111112333344 488999999999999984
No 22
>d1vjra_ c.108.1.14 (A:) Hypothetical protein TM1742 {Thermotoga maritima [TaxId: 2336]}
Probab=29.60 E-value=20 Score=27.80 Aligned_cols=58 Identities=17% Similarity=-0.016 Sum_probs=44.2
Q ss_pred cceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCC
Q 023546 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID 71 (281)
Q Consensus 14 ~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~ 71 (281)
..|+-||=+|+.+.++-+.-+--.+...|.+++.=-|++..+.....+.++.+|+++.
T Consensus 11 lFDlDGTL~~~~~~i~~a~e~l~~l~~~g~~~~~~TN~~~~~~~~~~~~~~~~g~~~~ 68 (261)
T d1vjra_ 11 ILDMDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRNMGVDVP 68 (261)
T ss_dssp EECCBTTTEETTEECTTHHHHHHHHHHTTCEEEEEESCTTSCHHHHHHHHHHTTCCCC
T ss_pred EEeCCCeeEECCccCchHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhhccccc
Confidence 5788899888887666454444567888999998777776666667888999998765
No 23
>d2tpta1 a.46.2.1 (A:1-70) Thymidine phosphorylase {Escherichia coli [TaxId: 562]}
Probab=28.01 E-value=63 Score=19.91 Aligned_cols=52 Identities=13% Similarity=0.016 Sum_probs=36.4
Q ss_pred CChHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHccH
Q 023546 204 GGPAYNAEVLRRVLSGERGAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGK 260 (281)
Q Consensus 204 ~~~~~~~~~~~~vl~G~~~~~~~~v~~naa~~L~~~G~~~~~~eg~~~A~~~l~sG~ 260 (281)
.+.++....+..+++|+-++..- ..--.+++.-| .+.+|-...++...+||+
T Consensus 17 Ls~~E~~~~~~~i~~g~~~d~qi---~afL~al~~kG--et~~Ei~~~~~aMr~sG~ 68 (70)
T d2tpta1 17 LSDEEIRFFINGIRDNTISEGQI---AALAMTIFFHD--MTMPERVSLTMAMRDSGT 68 (70)
T ss_dssp CCHHHHHHHHHHHHHTCSCHHHH---HHHHHHHHHHC--CCHHHHHHHHHHHHHTSB
T ss_pred cCHHHHHHHHHHHHcCCchHHHH---HHHHHHHHHcC--CCHHHHHHHHHHHHHhCC
Confidence 36788888999999998754411 11112334444 488999999999999996
No 24
>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=24.48 E-value=13 Score=28.24 Aligned_cols=35 Identities=31% Similarity=0.526 Sum_probs=25.8
Q ss_pred ceEe-cCCCCCCCCccchHHHHHHHHcCCCcEEeeCCC
Q 023546 15 VDIV-GTGGDGANTVNISTGASILAAACGAKVAKQGSR 51 (281)
Q Consensus 15 ~Di~-gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~ 51 (281)
|=+. +-||.|++| ++.-.|..+|..|.+|+.--.+
T Consensus 5 Iav~~~kGGvGKTt--ia~nLA~~la~~g~~VlliD~D 40 (237)
T d1g3qa_ 5 ISIVSGKGGTGKTT--VTANLSVALGDRGRKVLAVDGD 40 (237)
T ss_dssp EEEECSSTTSSHHH--HHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEECCCCCCcHHH--HHHHHHHHHHhCCCCEEEEeCC
Confidence 3344 558999986 4666777788999999877543
No 25
>d1vkma_ c.138.1.1 (A:) Hypothetical protein TM1464 {Thermotoga maritima [TaxId: 2336]}
Probab=24.18 E-value=28 Score=28.62 Aligned_cols=106 Identities=16% Similarity=0.179 Sum_probs=63.1
Q ss_pred EecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCC-HHHHHHHH-HHcCeEEEeCCcc
Q 023546 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLD-PEGVRRCV-DEAGIGFMMSTKY 94 (281)
Q Consensus 17 i~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~~s-~~~a~~~l-~~~g~~fl~~~~~ 94 (281)
+.|-||.++++|-+|.=+. -|++..+-|+--|-+++=..--+.+.||.+||++--- -++....+ .+.|+- ++- .-
T Consensus 122 TGGIGGVHr~s~DiSaDL~-eL~~tpv~vVcaG~KsiLDi~~TlE~LET~gV~Vvgy~t~~fPaF~~~~Sg~~-~~~-v~ 198 (292)
T d1vkma_ 122 TGGTGGVHPGRVDVSQDLT-EMSSSRAVLVSSGIKSILDVEATFEMLETLEIPLVGFRTNEFPLFFSRKSGRR-VPR-IE 198 (292)
T ss_dssp CSCBCCBCTTSSCBCHHHH-HHTTCCEEEEESBBCTTSCHHHHHHHHHHTTCCEEEESCSBCCBTTBSCCSCB-CCE-EC
T ss_pred ecCcccccCCCccccccHh-hHhcCCeEEEecccHhhcccHHHHHHHHhcCeeEEeecCCcccceeecCCCCC-CCC-cC
Confidence 4566777777888887654 3588888888888887766667899999999987420 01110000 011111 000 00
Q ss_pred C-hhhhchHHHHhhhCCCChhhhhhhccCCCCCCce
Q 023546 95 H-PAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFA 129 (281)
Q Consensus 95 ~-P~l~~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~ 129 (281)
. -...+++..|+++|+.+-+ -+.||......
T Consensus 199 ~~~eiA~i~~~~~~lgl~~gi----LvanPIP~e~~ 230 (292)
T d1vkma_ 199 NVEEVLKIYESMKEMELEKTL----MVLNPVPEEYE 230 (292)
T ss_dssp SHHHHHHHHHHHHHTTCCSEE----EEECCCCGGGC
T ss_pred CHHHHHHHHHHHHHcCCCceE----EEECCCCchhh
Confidence 1 1223667778899986532 45788765554
No 26
>d3bula2 c.23.6.1 (A:741-896) Methionine synthase, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=23.71 E-value=49 Score=24.15 Aligned_cols=59 Identities=10% Similarity=0.057 Sum_probs=37.8
Q ss_pred HHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCCCCHHHHHHHHHHcCeEEEeCCc----cChhhhchHHHHhhh
Q 023546 33 GASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTK----YHPAMKFVRPVRKKL 108 (281)
Q Consensus 33 ~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~~s~~~a~~~l~~~g~~fl~~~~----~~P~l~~l~~lR~~l 108 (281)
.++.++-+.|+.|+--|. +.++++..+...+++.-++.... ..|.++.+...-++.
T Consensus 25 iv~~~l~~~G~~Vi~LG~--------------------~~p~e~~~~~~~~~~~d~i~lS~l~~~~~~~~~~~~~~l~~~ 84 (156)
T d3bula2 25 IVGVVLQCNNYEIVDLGV--------------------MVPAEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQ 84 (156)
T ss_dssp HHHHHHHTTTCEEEECCS--------------------SBCHHHHHHHHHHHTCSEEEEECCSTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCEEEECCC--------------------CCCHHHHHHHHHhhCCCEEEEecccccchHHHHHHHHHHHhc
Confidence 355556677777764443 45789999999998888777643 344555555555555
Q ss_pred CCC
Q 023546 109 KVK 111 (281)
Q Consensus 109 g~R 111 (281)
|++
T Consensus 85 g~~ 87 (156)
T d3bula2 85 GFT 87 (156)
T ss_dssp TCC
T ss_pred ccc
Confidence 543
No 27
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}
Probab=23.69 E-value=24 Score=24.38 Aligned_cols=28 Identities=29% Similarity=0.274 Sum_probs=21.6
Q ss_pred ceEecCCCCCCCCccchHHHHHHHHcCCCcEEe
Q 023546 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAK 47 (281)
Q Consensus 15 ~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~ 47 (281)
|=++|++|.|+ ||.+-.++-..|++++.
T Consensus 5 I~l~G~~GsGK-----STvak~La~~L~~~~id 32 (169)
T d1kaga_ 5 IFLVGPMGAGK-----STIGRQLAQQLNMEFYD 32 (169)
T ss_dssp EEEECCTTSCH-----HHHHHHHHHHTTCEEEE
T ss_pred EEEECCCCCCH-----HHHHHHHHHHhCCCeEe
Confidence 34679999999 67777777778998873
No 28
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}
Probab=22.20 E-value=20 Score=25.39 Aligned_cols=26 Identities=35% Similarity=0.417 Sum_probs=21.1
Q ss_pred EecCCCCCCCCccchHHHHHHHHcCCCcEEe
Q 023546 17 IVGTGGDGANTVNISTGASILAAACGAKVAK 47 (281)
Q Consensus 17 i~gtggdG~~t~nis~~aa~vlA~~G~~V~~ 47 (281)
++|++|.|+ ||.+..+.-..|++++-
T Consensus 9 i~G~pGsGK-----TTia~~La~~l~~~~i~ 34 (173)
T d1rkba_ 9 LTGTPGVGK-----TTLGKELASKSGLKYIN 34 (173)
T ss_dssp EECSTTSSH-----HHHHHHHHHHHCCEEEE
T ss_pred EECCCCCCH-----HHHHHHHHHHHCCcEEe
Confidence 789999998 67777777778888874
No 29
>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=21.91 E-value=43 Score=22.75 Aligned_cols=91 Identities=9% Similarity=-0.026 Sum_probs=45.5
Q ss_pred CCCCCCCHHHHHHHHHHcCeEEEeCCcc-------ChhhhchHHHHh--hhCCCChhhhhhhccCCCCCCceEEeeeChh
Q 023546 67 GVVIDLDPEGVRRCVDEAGIGFMMSTKY-------HPAMKFVRPVRK--KLKVKTVFNILGPMLNPACVPFAVVGVYNEN 137 (281)
Q Consensus 67 Gi~~~~s~~~a~~~l~~~g~~fl~~~~~-------~P~l~~l~~lR~--~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~ 137 (281)
.+|...+++++.++++. |..+++...- -|....+ ++.. ........+.+..+.........|+=+.+-.
T Consensus 5 ~~p~~i~~~~a~~l~~~-g~~liDvR~~~e~~~ghi~ga~~i-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~C~~G 82 (119)
T d1tq1a_ 5 RVPSSVSVTVAHDLLLA-GHRYLDVRTPEEFSQGHACGAINV-PYMNRGASGMSKNTDFLEQVSSHFGQSDNIIVGCQSG 82 (119)
T ss_dssp CCCEEEEHHHHHHHHHH-TCCEEEESCHHHHHHCCBTTBEEC-CSCCCSTTTCCCTTTHHHHHTTTCCTTSSEEEEESSC
T ss_pred cCCCccCHHHHHHHHHC-cCEEEECCCHHHHHcCCCCCccch-hhcccccccccccHHHHHHHHHhcCCCcEEEEEcCCc
Confidence 45666777777777765 6677776421 1111110 1100 0011122233344444443333343333333
Q ss_pred h-HHHHHHHHHHcCCCeEEEEec
Q 023546 138 L-VLKMANALQRFGLKRALVVHS 159 (281)
Q Consensus 138 ~-~~~~~~~~~~lg~~~~lvv~G 159 (281)
. ....++.++.+|++++..+.|
T Consensus 83 ~rs~~a~~~L~~~G~~nv~~l~G 105 (119)
T d1tq1a_ 83 GRSIKATTDLLHAGFTGVKDIVG 105 (119)
T ss_dssp SHHHHHHHHHHHHHCCSEEEEEC
T ss_pred CcHHHHHHHHHhcccCCeEEecC
Confidence 2 445677888889988888876
No 30
>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=21.47 E-value=30 Score=26.08 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=20.6
Q ss_pred ceEecCCCCCCCCccchHHHHHHHHcCCCcEEe
Q 023546 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAK 47 (281)
Q Consensus 15 ~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~ 47 (281)
|-|+|.||.| ++.|.++|..|+.|.-
T Consensus 3 I~ViGlG~vG-------l~~a~~la~~g~~V~g 28 (202)
T d1mv8a2 3 ISIFGLGYVG-------AVCAGCLSARGHEVIG 28 (202)
T ss_dssp EEEECCSTTH-------HHHHHHHHHTTCEEEE
T ss_pred EEEECCCHhH-------HHHHHHHHhCCCcEEE
Confidence 4578999955 5678888999999973
No 31
>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}
Probab=21.20 E-value=35 Score=22.76 Aligned_cols=49 Identities=22% Similarity=0.379 Sum_probs=34.1
Q ss_pred CcceEecCCCCCCCCccchHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCC
Q 023546 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID 71 (281)
Q Consensus 13 ~~~Di~gtggdG~~t~nis~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~ 71 (281)
+-+-+.|-||-|. .++|.+|.+.|+.|. |++.. ..-..+-|+.+|+++.
T Consensus 9 ~~ihfiGigG~GM------s~LA~~L~~~G~~Vs--GSD~~--~~~~~~~L~~~Gi~v~ 57 (96)
T d1p3da1 9 QQIHFIGIGGAGM------SGIAEILLNEGYQIS--GSDIA--DGVVTQRLAQAGAKIY 57 (96)
T ss_dssp CEEEEETTTSTTH------HHHHHHHHHHTCEEE--EEESC--CSHHHHHHHHTTCEEE
T ss_pred CEEEEEEECHHHH------HHHHHHHHhCCCEEE--EEeCC--CChhhhHHHHCCCeEE
Confidence 4577888888876 345999999999998 66432 2233455566788765
No 32
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}
Probab=20.88 E-value=1.6e+02 Score=22.18 Aligned_cols=131 Identities=15% Similarity=0.218 Sum_probs=68.5
Q ss_pred CcceEecCCCCCCCCccchHH-HHHHHHcCCCcEEeeCCCCCCCcccHHH----HHHHcCCCCC--CC---HHHH-HH--
Q 023546 13 DAVDIVGTGGDGANTVNISTG-ASILAAACGAKVAKQGSRSSSSACGSAD----VLEALGVVID--LD---PEGV-RR-- 79 (281)
Q Consensus 13 ~~~Di~gtggdG~~t~nis~~-aa~vlA~~G~~V~~HG~~~~~~~~gs~d----vLe~LGi~~~--~s---~~~a-~~-- 79 (281)
.++=.+|+.|.|+.| +.+ .|-.+...|.+|..-..+. .|.|..+ .-+.+|+++. .+ +.++ .+
T Consensus 13 ~vi~lvGptGvGKTT---TiAKLA~~~~~~g~kV~lit~Dt--~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a~ 87 (211)
T d1j8yf2 13 YVIMLVGVQGTGKAT---TAGKLAYFYKKKGFKVGLVGADV--YRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGV 87 (211)
T ss_dssp EEEEEECSCCC-------HHHHHHHHHHHTTCCEEEEECCC--SSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHH---HHHHHHHHHHHCCCceEEEEeec--cccchhHHHHHhccccCcceeecccchhhhHHHHHHH
Confidence 345568999999974 221 2223345678887665543 5666444 4455688752 22 2221 11
Q ss_pred ---HHHHcCeEEEeCCccChhhh---chHHHHhhhCCCChhhhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCe
Q 023546 80 ---CVDEAGIGFMMSTKYHPAMK---FVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKR 153 (281)
Q Consensus 80 ---~l~~~g~~fl~~~~~~P~l~---~l~~lR~~lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~ 153 (281)
..++..+.+++.+-.+|--. .+..+++ +.+. .+|...-..+-.-.+.+-.+......+..+.+.
T Consensus 88 ~~~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~------~~~~----~~~~~~~LVl~a~~~~~~~~~~~~~~~~~~~~~ 157 (211)
T d1j8yf2 88 EKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKN------IYEA----IKPDEVTLVIDASIGQKAYDLASKFNQASKIGT 157 (211)
T ss_dssp HHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHH------HHHH----HCCSEEEEEEEGGGGGGHHHHHHHHHHHCTTEE
T ss_pred HHhhccCCceEEEecCCcCccchhhHHHHHHHH------HHhh----cCCceEEEEEecccCcchHHHHhhhhcccCcce
Confidence 23456889999988776542 2223322 2222 234322222333445566677777888889865
Q ss_pred EEEEe
Q 023546 154 ALVVH 158 (281)
Q Consensus 154 ~lvv~ 158 (281)
.++-|
T Consensus 158 lI~TK 162 (211)
T d1j8yf2 158 IIITK 162 (211)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 55545
No 33
>d2obba1 c.108.1.25 (A:1-122) Hypothetical protein BT0820 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=20.69 E-value=36 Score=23.90 Aligned_cols=41 Identities=10% Similarity=-0.039 Sum_probs=28.5
Q ss_pred hHHHHHHHHcCCCcEEeeCCCCCCCcccHHHHHHHcCCCCC
Q 023546 31 STGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID 71 (281)
Q Consensus 31 s~~aa~vlA~~G~~V~~HG~~~~~~~~gs~dvLe~LGi~~~ 71 (281)
..-..--+.+.|..|+.+-+|+...+-.+.+-|+.-|++..
T Consensus 26 ~Ie~l~~L~~~G~~IIi~TaR~~~~~~~t~~wL~~~~i~yd 66 (122)
T d2obba1 26 AVETLKLLQQEKHRLILWSVREGELLDEAIEWCRARGLEFY 66 (122)
T ss_dssp HHHHHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTTCCCS
T ss_pred HHHHHHHHHHCCCeEEEEecCCCcchHHHHHHHHHcCCCce
Confidence 34455667789999999999976555556666666666553
No 34
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}
Probab=20.04 E-value=1.7e+02 Score=22.00 Aligned_cols=133 Identities=17% Similarity=0.172 Sum_probs=77.3
Q ss_pred CCcceEecCCCCCCCCccchHHHHH---HHHcCCCcEEeeCCCCCCCcccHHHHH----HHcCCCCC-----CCHHHHH-
Q 023546 12 GDAVDIVGTGGDGANTVNISTGASI---LAAACGAKVAKQGSRSSSSACGSADVL----EALGVVID-----LDPEGVR- 78 (281)
Q Consensus 12 ~~~~Di~gtggdG~~t~nis~~aa~---vlA~~G~~V~~HG~~~~~~~~gs~dvL----e~LGi~~~-----~s~~~a~- 78 (281)
+.++=.+|+.|.|+. |.+|. .+...|.+|..-..+ +.|.|..+-| +.+|+++- .++.++.
T Consensus 6 ~~vi~lvGptGvGKT-----TTiaKLA~~~~~~g~kV~lit~D--t~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~ 78 (207)
T d1okkd2 6 GRVVLVVGVNGVGKT-----TTIAKLGRYYQNLGKKVMFCAGD--TFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAY 78 (207)
T ss_dssp SSEEEEECSTTSSHH-----HHHHHHHHHHHTTTCCEEEECCC--CSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHH
T ss_pred CEEEEEECCCCCCHH-----HHHHHHHHHHHHCCCcEEEEEec--cccccchhhHhhcccccCceEEeccCCccHHHHHH
Confidence 456667999999995 33333 334567777765443 3577754444 55688753 2343332
Q ss_pred -----HHHHHcCeEEEeCCccChhhhchHH-HHhhhCCCChhhhhhhccCCCCC---CceEEeeeChhhHHHHHHHHHHc
Q 023546 79 -----RCVDEAGIGFMMSTKYHPAMKFVRP-VRKKLKVKTVFNILGPMLNPACV---PFAVVGVYNENLVLKMANALQRF 149 (281)
Q Consensus 79 -----~~l~~~g~~fl~~~~~~P~l~~l~~-lR~~lg~Rt~~ntl~~LlNP~~~---~~~v~Gv~h~~~~~~~~~~~~~l 149 (281)
...++..+.+++.+-.+|.-..++. +++ +.+.+ +..+|..+ -..+-+-..+.-.....+..+.+
T Consensus 79 ~~~~~~~~~~~d~ilIDTaGr~~~d~~l~~el~~------~~~~~-~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~ 151 (207)
T d1okkd2 79 DAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKK------VKRAI-AKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV 151 (207)
T ss_dssp HHHHHHHHHTCSEEEECCCCCCTTCHHHHHHHHH------HHHHH-HHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEcCccccchhhHHHHHHHHH------HHHHh-hhcccCCCceEEEEeecccCchHHHHHHHhhhcc
Confidence 2234678899999877776554433 222 12222 23333322 22333556666677777788889
Q ss_pred CCCeEEEEe
Q 023546 150 GLKRALVVH 158 (281)
Q Consensus 150 g~~~~lvv~ 158 (281)
+.+..++-|
T Consensus 152 ~~~~lI~TK 160 (207)
T d1okkd2 152 GLTGVIVTK 160 (207)
T ss_dssp CCSEEEEEC
T ss_pred CCceEEEec
Confidence 997777766
Done!