Query 023548
Match_columns 281
No_of_seqs 95 out of 113
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 04:53:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023548.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023548hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05542 DUF760: Protein of un 99.9 4.3E-27 9.3E-32 184.6 8.8 83 12-140 3-86 (86)
2 PF05542 DUF760: Protein of un 97.8 0.00012 2.5E-09 57.8 7.3 76 194-270 2-77 (86)
3 PF08763 Ca_chan_IQ: Voltage g 74.2 3.1 6.8E-05 28.5 2.4 25 109-133 3-27 (35)
4 PF12037 DUF3523: Domain of un 49.7 24 0.00052 34.0 4.3 27 199-225 26-60 (276)
5 PF14164 YqzH: YqzH-like prote 39.6 33 0.00072 26.4 2.9 33 4-36 26-62 (64)
6 KOG0742 AAA+-type ATPase [Post 32.2 95 0.0021 32.5 5.6 28 200-227 71-106 (630)
7 PF09454 Vps23_core: Vps23 cor 23.6 1.4E+02 0.003 22.6 3.9 27 5-35 5-31 (65)
8 COG3471 Predicted periplasmic/ 21.2 2.2E+02 0.0047 27.0 5.4 41 2-42 112-164 (235)
9 KOG4826 C-8,7 sterol isomerase 14.5 36 0.00078 32.0 -1.3 59 223-281 40-112 (229)
10 PF11226 DUF3022: Protein of u 13.9 89 0.0019 26.4 1.0 35 199-233 53-90 (111)
No 1
>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins.
Probab=99.94 E-value=4.3e-27 Score=184.59 Aligned_cols=83 Identities=29% Similarity=0.395 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccCCcccccCCccccCCccchhhhccCchHHHHHHHHHHHHhhc
Q 023548 12 NARRIAQLKEHECQTAVEDVMYMLILYKFSEIRVQLVPKLSRCIYNGRLEIWPSKDWELESIHEFEVLEMIREHISTVIG 91 (281)
Q Consensus 12 LyrRIAevKe~Err~alEdImY~lIv~KF~~~~V~mvP~ls~~~~~Grl~~wp~~~~~Le~ihS~Ev~emI~~hl~~vLG 91 (281)
||++|++++. |+..+++| +|||||+|+|++||.++||
T Consensus 3 L~~yi~~l~p-e~~~~l~~------------------------------------------~~s~ev~e~m~~~v~~llG 39 (86)
T PF05542_consen 3 LLQYIQSLKP-ERIQQLSE------------------------------------------PASPEVLEAMKQHVSGLLG 39 (86)
T ss_pred HHHHHHHCCH-HHHHHhhc------------------------------------------cCCHHHHHHHHHHHHHHHc
Confidence 8999999999 99999998 8999999999999999999
Q ss_pred cc-cCCCCCCCcceEeechhhhhhHHHHHhhhhHhhhhhhhHhHHHHHHh
Q 023548 92 LR-ANCSVTDSWATTEIQRLRLGRVYVASILYGYFLKSASLRYYLEECLA 140 (281)
Q Consensus 92 ~~-~~~~~~~~~~~~~isr~~Lg~vyAAsmM~GYFLr~~eqR~~LE~sl~ 140 (281)
++ |++.++ ++++++|++||+||+++||+|||||++|+|++||++|+
T Consensus 40 ~l~p~~~~~---~~i~~s~~~La~L~~~~mm~GYfLr~~E~R~~Le~sL~ 86 (86)
T PF05542_consen 40 NLSPSDQFN---VTIQTSRENLAQLLAWSMMTGYFLRNAEQRLELERSLK 86 (86)
T ss_pred CCCCcccCc---ceeEECHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcC
Confidence 99 877655 79999999999999999999999999999999999985
No 2
>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins.
Probab=97.75 E-value=0.00012 Score=57.80 Aligned_cols=76 Identities=26% Similarity=0.369 Sum_probs=69.0
Q ss_pred hhhhhhhcCCHHHHHHHhhhhhHHHHHHHHHhhhhhccCCCCCCCCCCceEEechhhhHHHHHHHHhhhhhhhhhhh
Q 023548 194 NLKCYVMGFDPETLQRCAKLRSREAVNLVEKHSCALFGDGQTGLLDTDEVILTSFSSLKRLVLEAIAFGSFLWDAEE 270 (281)
Q Consensus 194 ~Lr~YVm~fD~eTLqr~A~irSkEav~liEkht~ALFG~~~~g~~~~dE~i~isfs~LkrLVLEAVAFGSFLwDvEs 270 (281)
.|=.||.+.+|+++++-++..|.|+++.|++|+..+-|.-. -....+-.|.++-..|-+|..=++.+|=|||.+|-
T Consensus 2 ~L~~yi~~l~pe~~~~l~~~~s~ev~e~m~~~v~~llG~l~-p~~~~~~~i~~s~~~La~L~~~~mm~GYfLr~~E~ 77 (86)
T PF05542_consen 2 DLLQYIQSLKPERIQQLSEPASPEVLEAMKQHVSGLLGNLS-PSDQFNVTIQTSRENLAQLLAWSMMTGYFLRNAEQ 77 (86)
T ss_pred hHHHHHHHCCHHHHHHhhccCCHHHHHHHHHHHHHHHcCCC-CcccCcceeEECHHHHHHHHHHHHHHhHHHHHHHH
Confidence 57789999999999999999999999999999999999875 23456678999999999999999999999999884
No 3
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=74.24 E-value=3.1 Score=28.54 Aligned_cols=25 Identities=16% Similarity=0.433 Sum_probs=20.3
Q ss_pred hhhhhhHHHHHhhhhHhhhhhhhHh
Q 023548 109 RLRLGRVYVASILYGYFLKSASLRY 133 (281)
Q Consensus 109 r~~Lg~vyAAsmM~GYFLr~~eqR~ 133 (281)
..++|++|||=|++-||-+.-..|.
T Consensus 3 ~~TVGK~YAt~lI~dyfr~~K~rk~ 27 (35)
T PF08763_consen 3 EVTVGKFYATLLIQDYFRQFKKRKE 27 (35)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999987766554
No 4
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=49.70 E-value=24 Score=33.95 Aligned_cols=27 Identities=44% Similarity=0.759 Sum_probs=20.2
Q ss_pred hhcCCHHHHHHHhhhh--------hHHHHHHHHHh
Q 023548 199 VMGFDPETLQRCAKLR--------SREAVNLVEKH 225 (281)
Q Consensus 199 Vm~fD~eTLqr~A~ir--------SkEav~liEkh 225 (281)
--+|||+.|.|.|+-- .|+|.+|+-+|
T Consensus 26 ~~~FDP~aLERaAkAlrel~~S~~Ak~afel~k~Q 60 (276)
T PF12037_consen 26 ASGFDPEALERAAKALRELNSSPHAKKAFELMKKQ 60 (276)
T ss_pred cCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHHH
Confidence 3489999999999853 46677776555
No 5
>PF14164 YqzH: YqzH-like protein
Probab=39.55 E-value=33 Score=26.44 Aligned_cols=33 Identities=27% Similarity=0.293 Sum_probs=25.6
Q ss_pred eccchhHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 023548 4 VTNHFCFLNARRIAQLKEHECQ----TAVEDVMYMLI 36 (281)
Q Consensus 4 ~~~~~~~vLyrRIAevKe~Err----~alEdImY~lI 36 (281)
+++.|--.|.++|++.|.+|-- .+||||.|--|
T Consensus 26 ls~~E~~~L~~~i~~~~~~~~~~Dl~eiVeDvVY~yi 62 (64)
T PF14164_consen 26 LSDEEWEELCKHIQERKNEEPDEDLHEIVEDVVYDYI 62 (64)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Confidence 5666777899999999988765 56788877654
No 6
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=32.21 E-value=95 Score=32.52 Aligned_cols=28 Identities=36% Similarity=0.618 Sum_probs=22.6
Q ss_pred hcCCHHHHHHHhhh--------hhHHHHHHHHHhhh
Q 023548 200 MGFDPETLQRCAKL--------RSREAVNLVEKHSC 227 (281)
Q Consensus 200 m~fD~eTLqr~A~i--------rSkEav~liEkht~ 227 (281)
-+|||+.|.|.|+- -+|++.+++.+|-+
T Consensus 71 ~gFDpeaLERaAKAlrein~s~~aK~vfel~r~qE~ 106 (630)
T KOG0742|consen 71 SGFDPEALERAAKALREINHSPYAKDVFELARMQEQ 106 (630)
T ss_pred cCCChHHHHHHHHHHHhhccCccHHHHHHHHHHHHH
Confidence 48999999999984 36888888876644
No 7
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=23.62 E-value=1.4e+02 Score=22.64 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=21.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023548 5 TNHFCFLNARRIAQLKEHECQTAVEDVMYML 35 (281)
Q Consensus 5 ~~~~~~vLyrRIAevKe~Err~alEdImY~l 35 (281)
.+.+ .|++.|=|+-++++ |+||.||.|
T Consensus 5 ~~~~--~l~~Ql~el~Aed~--AieDtiy~L 31 (65)
T PF09454_consen 5 VAED--PLSNQLYELVAEDH--AIEDTIYYL 31 (65)
T ss_dssp E-SS--HHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred ccCC--HHHHHHHHHHHHHH--HHHHHHHHH
Confidence 4455 48999999988874 999999985
No 8
>COG3471 Predicted periplasmic/secreted protein [Function unknown]
Probab=21.21 E-value=2.2e+02 Score=26.98 Aligned_cols=41 Identities=22% Similarity=0.269 Sum_probs=36.1
Q ss_pred ceeccchhHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHh
Q 023548 2 FTVTNHFCFLNARRIAQLKEH------------ECQTAVEDVMYMLILYKFSE 42 (281)
Q Consensus 2 ~~~~~~~~~vLyrRIAevKe~------------Err~alEdImY~lIv~KF~~ 42 (281)
|.+++.|.-.|=|=||++-++ |+|+++||=|--..++||-+
T Consensus 112 ~rles~Dfaalskl~adL~~~~k~ggmdftvSre~r~~ve~ql~k~av~~Fk~ 164 (235)
T COG3471 112 FRLESRDFAALSKLIADLQADAKLGGMDFTVSRERRNEVEDQLSKDAVLRFKA 164 (235)
T ss_pred EEEecCchHHHHHHHHHHHHhhhccCceeEecHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888899999999874 99999999999999999964
No 9
>KOG4826 consensus C-8,7 sterol isomerase [Lipid transport and metabolism]
Probab=14.46 E-value=36 Score=31.98 Aligned_cols=59 Identities=27% Similarity=0.307 Sum_probs=48.3
Q ss_pred HHhhhhhccCCCCCCCCCCceEEechhhhHHHHHHH--------------HhhhhhhhhhhhccccccccccC
Q 023548 223 EKHSCALFGDGQTGLLDTDEVILTSFSSLKRLVLEA--------------IAFGSFLWDAEEYADAVYKLKEN 281 (281)
Q Consensus 223 Ekht~ALFG~~~~g~~~~dE~i~isfs~LkrLVLEA--------------VAFGSFLwDvEsyVDs~Y~~~~~ 281 (281)
---+.-|+|+++.+.+.+.-.+=..++|+-++|+|+ -+|=+-+|.-=+-+|+||-.-||
T Consensus 40 v~~~~lls~~~~~~~L~~w~l~Wl~vsGlih~v~egyfv~~p~~~~~~~~s~~L~~~WKeYsk~D~RYv~~d~ 112 (229)
T KOG4826|consen 40 VVTTWLLSGRAAVVVLDKWVLCWLAVSGLIHLVLEGYFVFRPETNLPANSSALLAQLWKEYSKGDSRYVLTDD 112 (229)
T ss_pred HHHHHHHhCCCCCCCCcchhhHHHHhhCeeeeEEEeeEEeeecccCCccHHHHHHHHHHHhcccceeEeccCC
Confidence 344678999998877777777778899999999985 46777899999999999987664
No 10
>PF11226 DUF3022: Protein of unknown function (DUF3022); InterPro: IPR021389 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=13.91 E-value=89 Score=26.41 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=23.8
Q ss_pred hhcCCHHHHHHHhhhhhHHH---HHHHHHhhhhhccCC
Q 023548 199 VMGFDPETLQRCAKLRSREA---VNLVEKHSCALFGDG 233 (281)
Q Consensus 199 Vm~fD~eTLqr~A~irSkEa---v~liEkht~ALFG~~ 233 (281)
+-.|||.+|+|||-|-...= -..+--++++-||.-
T Consensus 53 ~lrf~~~~l~RYaald~~~R~Rv~a~L~a~v~~~l~~l 90 (111)
T PF11226_consen 53 DLRFDPDVLARYAALDTAARARVHARLRAYVRATLDSL 90 (111)
T ss_pred EEEECHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 35799999999986544332 234556777888773
Done!