Query 023548
Match_columns 281
No_of_seqs 95 out of 113
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 08:43:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023548.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023548hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fnaa1 a.4.5.11 (A:284-356) H 19.2 17 0.0012 25.6 1.0 20 253-273 9-29 (73)
2 d2nn6a2 d.101.1.1 (A:185-302) 17.0 60 0.0044 23.5 3.9 32 201-232 57-88 (118)
3 d1hx8a1 a.7.8.2 (A:167-299) AP 15.9 41 0.003 25.6 2.7 61 17-89 71-133 (133)
4 d2nn6c2 d.101.1.1 (C:188-276) 15.2 74 0.0054 21.5 3.8 29 201-229 55-83 (89)
5 d2nn6e2 d.101.1.1 (E:192-285) 13.0 94 0.0068 21.3 3.8 30 201-230 55-84 (94)
6 d2je6a2 d.101.1.1 (A:192-275) 11.0 90 0.0066 20.6 3.1 29 201-229 54-82 (84)
7 d2eyqa6 d.315.1.1 (A:990-1147) 10.4 61 0.0045 24.1 2.2 19 10-28 35-53 (158)
8 d1cmza_ a.91.1.1 (A:) Galpha i 9.8 73 0.0053 22.5 2.3 71 11-90 40-110 (128)
9 d1r59o2 c.55.1.4 (O:257-491) G 9.4 59 0.0043 26.0 1.8 18 246-263 116-133 (235)
10 d1h9aa2 d.81.1.5 (A:182-412,A: 9.2 29 0.0021 29.6 -0.3 22 78-99 52-73 (290)
No 1
>d2fnaa1 a.4.5.11 (A:284-356) Hypothetical protein SSO1545, C-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=19.22 E-value=17 Score=25.64 Aligned_cols=20 Identities=10% Similarity=0.290 Sum_probs=14.6
Q ss_pred HHHHHHHhhhhhhh-hhhhccc
Q 023548 253 RLVLEAIAFGSFLW-DAEEYAD 273 (281)
Q Consensus 253 rLVLEAVAFGSFLw-DvEsyVD 273 (281)
..||+|||+|+- | ++=.||+
T Consensus 9 ~~ILkaia~G~r-Ws~IK~yle 29 (73)
T d2fnaa1 9 LNIMRTLSKCGK-WSDVKRALE 29 (73)
T ss_dssp HHHHHHHTTCBC-HHHHHHHHH
T ss_pred HHHHHHHHccCc-HHHHHHHHH
Confidence 579999999975 6 4555554
No 2
>d2nn6a2 d.101.1.1 (A:185-302) Exosome complex exonuclease RRP45 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.03 E-value=60 Score=23.46 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=28.7
Q ss_pred cCCHHHHHHHhhhhhHHHHHHHHHhhhhhccC
Q 023548 201 GFDPETLQRCAKLRSREAVNLVEKHSCALFGD 232 (281)
Q Consensus 201 ~fD~eTLqr~A~irSkEav~liEkht~ALFG~ 232 (281)
.|+++++.+|..+..+.+-.|.+..-.||=.+
T Consensus 57 ~l~~~~l~~~~~~A~~~~~el~~~i~~aLk~~ 88 (118)
T d2nn6a2 57 MLLKDQVLRCSKIAGVKVAEITELILKALEND 88 (118)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999998643
No 3
>d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=15.88 E-value=41 Score=25.57 Aligned_cols=61 Identities=15% Similarity=0.247 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccCCccc--ccCCccccCCccchhhhccCchHHHHHHHHHHHHh
Q 023548 17 AQLKEHECQTAVEDVMYMLILYKFSEIRVQLVPKLSRC--IYNGRLEIWPSKDWELESIHEFEVLEMIREHISTV 89 (281)
Q Consensus 17 AevKe~Err~alEdImY~lIv~KF~~~~V~mvP~ls~~--~~~Grl~~wp~~~~~Le~ihS~Ev~emI~~hl~~v 89 (281)
-||...+|.+|++ |.+||....-.+.-=++-| ..-+|.+ -| .++.+ +..-++-+++||+++
T Consensus 71 Fem~k~da~~al~------iyk~~~~q~e~L~~f~~~ck~~g~~r~e-~P----~l~~~-p~sll~~LEe~l~~l 133 (133)
T d1hx8a1 71 FDMNKKHARDALD------LYKKFLVRMDRVGEFLKVAENVGIDKGD-IP----DLTKA-PSSLLDALEQHLATL 133 (133)
T ss_dssp TTCCSHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHTTCCGGG-SC----CCCCC-CHHHHHHHHHHHHTC
T ss_pred HccCHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHcCccccC-CC----CCCCC-CHHHHHHHHHHHHhC
Confidence 3477789999998 5566665543333333323 1223322 33 13333 366778889998753
No 4
>d2nn6c2 d.101.1.1 (C:188-276) Exosome complex exonuclease RRP43 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.18 E-value=74 Score=21.50 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=26.3
Q ss_pred cCCHHHHHHHhhhhhHHHHHHHHHhhhhh
Q 023548 201 GFDPETLQRCAKLRSREAVNLVEKHSCAL 229 (281)
Q Consensus 201 ~fD~eTLqr~A~irSkEav~liEkht~AL 229 (281)
.|+++.++.|..+..+.+-.|.+..-+||
T Consensus 55 ~l~~~~l~~~~~~A~~~~~~l~~~l~~al 83 (89)
T d2nn6c2 55 GLTGAKLQDCMSRAVTRHKEVKKLMDEVI 83 (89)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999888876
No 5
>d2nn6e2 d.101.1.1 (E:192-285) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.96 E-value=94 Score=21.26 Aligned_cols=30 Identities=17% Similarity=0.218 Sum_probs=27.5
Q ss_pred cCCHHHHHHHhhhhhHHHHHHHHHhhhhhc
Q 023548 201 GFDPETLQRCAKLRSREAVNLVEKHSCALF 230 (281)
Q Consensus 201 ~fD~eTLqr~A~irSkEav~liEkht~ALF 230 (281)
.|+++++..|..+..+-+..|.+..-+||=
T Consensus 55 ~l~~~~i~~~i~~A~~~~~el~~~l~~~L~ 84 (94)
T d2nn6e2 55 SLDPESIFEMMETGKRVGKVLHASLQSVVH 84 (94)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999888873
No 6
>d2je6a2 d.101.1.1 (A:192-275) Exosome complex exonuclease 2, ECX2 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=10.97 E-value=90 Score=20.63 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=26.1
Q ss_pred cCCHHHHHHHhhhhhHHHHHHHHHhhhhh
Q 023548 201 GFDPETLQRCAKLRSREAVNLVEKHSCAL 229 (281)
Q Consensus 201 ~fD~eTLqr~A~irSkEav~liEkht~AL 229 (281)
.|+++.+.+|-.+..+.+..|++..-+||
T Consensus 54 ~~~~~~i~~~i~~A~~~~~~l~~~l~~~l 82 (84)
T d2je6a2 54 SMSLQDIDQAENTARSTAVKLLEELKKHL 82 (84)
T ss_dssp CEEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999887775
No 7
>d2eyqa6 d.315.1.1 (A:990-1147) Transcription-repair coupling factor, TRCF, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=10.38 E-value=61 Score=24.14 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023548 10 FLNARRIAQLKEHECQTAV 28 (281)
Q Consensus 10 ~vLyrRIAevKe~Err~al 28 (281)
+-+|||||..+..+--..+
T Consensus 35 l~~Ykrla~~~~~~el~~i 53 (158)
T d2eyqa6 35 LSFYKRIASAKTENELEEI 53 (158)
T ss_dssp HHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHHccccHHHHHHH
Confidence 4689999999877655444
No 8
>d1cmza_ a.91.1.1 (A:) Galpha interacting protein, GaIP {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.81 E-value=73 Score=22.51 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccCCcccccCCccccCCccchhhhccCchHHHHHHHHHHHHhh
Q 023548 11 LNARRIAQLKEHECQTAVEDVMYMLILYKFSEIRVQLVPKLSRCIYNGRLEIWPSKDWELESIHEFEVLEMIREHISTVI 90 (281)
Q Consensus 11 vLyrRIAevKe~Err~alEdImY~lIv~KF~~~~V~mvP~ls~~~~~Grl~~wp~~~~~Le~ihS~Ev~emI~~hl~~vL 90 (281)
-.+.=+.+.|...-+..+.+. -.-|.+||...+-+.-+.+++.+.+. ....+..++ +++++-++++|..+|
T Consensus 40 ~Fw~~ve~fk~~~~~~~~~~~-a~~Iy~~yi~~~s~~~~~i~~~~r~~-------i~~~~~~~~-~~~F~~aq~~V~~~l 110 (128)
T d1cmza_ 40 LFWLACEELKAEANQHVVDEK-ARLIYEDYVSILSPKEVSLDSRVREG-------INKKMQEPS-AHTFDDAQLQIYTLM 110 (128)
T ss_dssp HHHHHHHHGGGTCCSHHHHHH-HHHHHHHTTTCSSSCCCSCCSHHHHH-------HHHHSSSCC-TTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHH-HHHHHHHHhccCCCccCCcCHHHHHH-------HHHHhcCCC-HHHHHHHHHHHHHHH
Confidence 345556666654333333332 35688999988877777766532110 012233333 566777777776666
No 9
>d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]}
Probab=9.44 E-value=59 Score=25.97 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=14.6
Q ss_pred echhhhHHHHHHHHhhhh
Q 023548 246 TSFSSLKRLVLEAIAFGS 263 (281)
Q Consensus 246 isfs~LkrLVLEAVAFGS 263 (281)
.+-..|=|.|||+|||+.
T Consensus 116 ~~~~~l~rAvlEgiaf~~ 133 (235)
T d1r59o2 116 TTKEDFVRATLQAVAYQS 133 (235)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 345568899999999984
No 10
>d1h9aa2 d.81.1.5 (A:182-412,A:427-485) Glucose 6-phosphate dehydrogenase {Leuconostoc mesenteroides [TaxId: 1245]}
Probab=9.22 E-value=29 Score=29.57 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhhccccCCCCC
Q 023548 78 VLEMIREHISTVIGLRANCSVT 99 (281)
Q Consensus 78 v~emI~~hl~~vLG~~~~~~~~ 99 (281)
+.+||+|||..||...+-+.+.
T Consensus 52 iRDmvQNHLlQll~lvaMe~P~ 73 (290)
T d1h9aa2 52 LLDMIQNHTMQIVGWLAMEKPE 73 (290)
T ss_dssp HHHTTTTHHHHHHHHHHCCCCS
T ss_pred HHHHHHHHHHHHHHHHHhCccc
Confidence 4799999999999988766443
Done!