BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023549
(281 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 124/275 (45%), Gaps = 21/275 (7%)
Query: 1 MEEVFSQSKRFFKMPLNEKMKVLRNEK-HRGYTPVLDELLDPDTQVRGDYKEGYYIGVEV 59
++ +K FF +P+ K + + RGY P E D KE ++ G ++
Sbjct: 48 IDAAVDSAKAFFALPVETKKQYAGVKGGARGYIPFGVETAKGADHY--DLKEFWHXGRDL 105
Query: 60 PEGDPESEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVARIIXXXXXXXXXFFD 119
P G + NVWPA +P ++ + V I FF
Sbjct: 106 PPG--HRFRAHXADNVWPAE--IPAFKHDVSWLYNSLDGXGGKVLEAIATYLKLERDFFK 161
Query: 120 KPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAK 179
G ++ LRLLHY I + G+ AGAH D ITLL E GL++ DRD +
Sbjct: 162 PTVQDGNSV--LRLLHYP-PIPKDATGVR-AGAHGDINTITLLLGAEEGGLEVL-DRDGQ 216
Query: 180 PQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLG-----TGRERYSIAFFVEPSH 234
W + P G ++N+GD LER +N + ST+HRV+ G RYS FF+ +
Sbjct: 217 ---WLPINPPPGCLVINIGDXLERLTNNVLPSTVHRVVNPPPERRGVPRYSTPFFLHFAS 273
Query: 235 DCLVECLPTCKSDKNPPKFP-PIKCETYLSQRYKD 268
D ++ L C + +NP ++P I + +L QR ++
Sbjct: 274 DYEIKTLQNCVTAENPDRYPESITADEFLQQRLRE 308
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 121 PEMLGQAIATL-RLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQICKDRDAK 179
PE + + TL R+LHY D G A AH D LIT+L T GLQ+ AK
Sbjct: 141 PEXIANSHKTLLRILHYPPXTGDEEXGAIRAAAHEDINLITVLPTANEPGLQV----KAK 196
Query: 180 PQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVL---GT--GRERYSIAFFVEPSH 234
W DV G I+N+GD L+ S+ F ST HRV+ GT + R S+ F+ P
Sbjct: 197 DGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLFLHPHP 256
Query: 235 DCLVECLPTCKS 246
++ T S
Sbjct: 257 SVVLSERYTADS 268
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 85/198 (42%), Gaps = 17/198 (8%)
Query: 65 ESEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVARIIXXXXXXXXXFFDKPEML 124
+++ P + NVWP PG+++ E++ + ++ A+ + FF +
Sbjct: 118 QAKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKP 177
Query: 125 GQAIATLRLLHY-------EGQISDPSKGM-YGAGAHSDYGLITLLATDEVAGLQICKDR 176
+A++ L+ Y E I + G H D LIT+L V LQ+
Sbjct: 178 DDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQV---- 233
Query: 177 DAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVEPSHDC 236
++D+ +++N G + +N +K+ +HRV ER S+ FFV +D
Sbjct: 234 -ETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAERQSLPFFVNLGYDS 292
Query: 237 LVECL----PTCKSDKNP 250
+++ P KSD+ P
Sbjct: 293 VIDPFDPREPNGKSDREP 310
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 85/198 (42%), Gaps = 17/198 (8%)
Query: 65 ESEKPFYGPNVWPAPDCLPGWRETMERFQREALEVAKAVARIIXXXXXXXXXFFDKPEML 124
+++ P + NVWP PG+++ E++ + ++ A+ + FF +
Sbjct: 118 QAKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKP 177
Query: 125 GQAIATLRLLHY-------EGQISDPSKGM-YGAGAHSDYGLITLLATDEVAGLQICKDR 176
+A++ L+ Y E I + G H D LIT+L V LQ+
Sbjct: 178 DDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQV---- 233
Query: 177 DAKPQLWEDVAPMKGAFIVNLGDMLERWSNCIFKSTLHRVLGTGRERYSIAFFVEPSHDC 236
++D+ +++N G + +N +K+ +HRV ER S+ FFV +D
Sbjct: 234 -ETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAERQSLPFFVNLGYDS 292
Query: 237 LVECL----PTCKSDKNP 250
+++ P KSD+ P
Sbjct: 293 VIDPFDPREPNGKSDREP 310
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 62/120 (51%), Gaps = 10/120 (8%)
Query: 147 MYGAGAHSDYG-LITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWS 205
+ G AH+D G +I L D+V+GLQ+ KD W DV P + + +VNLGD LE +
Sbjct: 171 IKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQ-----WIDVPPXRHSIVVNLGDQLEVIT 225
Query: 206 NCIFKSTLHRVLGTGR-ERYSIAFFVEPSHDCLVECLPTC---KSDKNPPKFPPIKCETY 261
N +KS HRV+ R S+A F P D ++ P ++++N +P + Y
Sbjct: 226 NGKYKSVXHRVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDY 285
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 16/134 (11%)
Query: 149 GAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCI 208
G AH+D +T + + V GLQ+ + W + + ++++GD LE SN
Sbjct: 227 GVEAHTDVSALTFILHNMVPGLQLFYEGK-----WVTAKCVPDSIVMHIGDTLEILSNGK 281
Query: 209 FKSTLHR-VLGTGRERYSIAFFVEPSHDCLV-ECLPTCKSDKNPPKFPPIKCETYLSQRY 266
+KS LHR ++ + R S A F EP D +V + LP S ++P KFPP R
Sbjct: 282 YKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPP---------RT 332
Query: 267 KDTHADLNMYNKQQ 280
H + ++ K+Q
Sbjct: 333 FAQHIEHKLFGKEQ 346
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 16/134 (11%)
Query: 149 GAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCI 208
G AH+D +T + + V GLQ+ + W + + ++++GD LE SN
Sbjct: 228 GVEAHTDVSALTFILHNMVPGLQLFYEGK-----WVTAKCVPDSIVMHIGDTLEILSNGK 282
Query: 209 FKSTLHR-VLGTGRERYSIAFFVEPSHDCLV-ECLPTCKSDKNPPKFPPIKCETYLSQRY 266
+KS LHR ++ + R S A F EP D +V + LP S ++P KFPP R
Sbjct: 283 YKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPP---------RT 333
Query: 267 KDTHADLNMYNKQQ 280
H + ++ K+Q
Sbjct: 334 FAQHIEHKLFGKEQ 347
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 16/134 (11%)
Query: 149 GAGAHSDYGLITLLATDEVAGLQICKDRDAKPQLWEDVAPMKGAFIVNLGDMLERWSNCI 208
G AH+D +T + + V GLQ+ + W + + + ++GD LE SN
Sbjct: 228 GVEAHTDVSALTFILHNXVPGLQLFYEGK-----WVTAKCVPDSIVXHIGDTLEILSNGK 282
Query: 209 FKSTLHR-VLGTGRERYSIAFFVEPSHDCLV-ECLPTCKSDKNPPKFPPIKCETYLSQRY 266
+KS LHR ++ + R S A F EP D +V + LP S ++P KFPP R
Sbjct: 283 YKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEXVSVESPAKFPP---------RT 333
Query: 267 KDTHADLNMYNKQQ 280
H + ++ K+Q
Sbjct: 334 FAQHIEHKLFGKEQ 347
>pdb|4AXV|A Chain A, Biochemical And Structural Characterization Of The Mpaa
Amidase As Part Of A Conserved Scavenging Pathway For
Peptidoglycan Derived Peptides In Gamma-Proteobacteria
Length = 243
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 117 FFDKPEMLGQAIATLRLLHYEGQISDPSKGMYGAGAHSDYGLITLLATDEVAGLQ 171
F P G+++ LL++ Q+ S+G+ AG H D T +AGL
Sbjct: 19 FLITPTSYGKSVLGAPLLYFPAQVESNSRGLILAGTHGD-------ETASIAGLS 66
>pdb|1WY7|A Chain A, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|B Chain B, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|C Chain C, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|D Chain D, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
Length = 207
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 125 GQAIATLRLLHYE-GQISDPSKGMYGAGAHS-DYGLITLLATDEVAGLQICKDRDAKPQL 182
G A + L L Y G I GAG YG + LL EV +++ D++A L
Sbjct: 32 GNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGAL-LLGAKEVICVEV--DKEAVDVL 88
Query: 183 WEDVAPMKGAFIVNLGDMLE 202
E++ KG F V +GD+ E
Sbjct: 89 IENLGEFKGKFKVFIGDVSE 108
>pdb|1XFD|A Chain A, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|B Chain B, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|C Chain C, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|D Chain D, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
Length = 723
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 52 GYYIGVEVPEGDPESEKPFYGPNVWPAPDCLPGW 85
GYY+ ++P GDP+S P P V A GW
Sbjct: 91 GYYVLSKIPHGDPQSLDP---PEVSNAKLQYAGW 121
>pdb|3UA4|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5
pdb|3UA4|B Chain B, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5
Length = 745
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 25 NEKHRGYTPVLDELLDPDTQVRGDYKEGYYIGVEVPEGDPESEKPFYG 72
N + PV+D PD Q+R D E Y +G P D +S P +
Sbjct: 100 NGSAENHPPVIDL---PDVQLRNDLWESYVVGKISPWIDCDSSDPAFA 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,113,988
Number of Sequences: 62578
Number of extensions: 392565
Number of successful extensions: 832
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 810
Number of HSP's gapped (non-prelim): 31
length of query: 281
length of database: 14,973,337
effective HSP length: 98
effective length of query: 183
effective length of database: 8,840,693
effective search space: 1617846819
effective search space used: 1617846819
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)