Query 023550
Match_columns 281
No_of_seqs 288 out of 1757
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 04:54:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023550.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023550hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03088 SGT1, suppressor of 100.0 1.2E-45 2.7E-50 334.3 30.6 248 1-265 1-248 (356)
2 cd06488 p23_melusin_like p23_l 99.9 1.4E-25 3.1E-30 162.5 10.3 87 174-260 1-87 (87)
3 KOG1309 Suppressor of G2 allel 99.9 1.6E-25 3.5E-30 175.8 8.8 98 172-269 2-99 (196)
4 cd06489 p23_CS_hSgt1_like p23_ 99.9 1.5E-23 3.3E-28 151.1 9.9 84 177-260 1-84 (84)
5 KOG0553 TPR repeat-containing 99.9 4.8E-21 1E-25 163.6 13.3 119 2-120 81-199 (304)
6 cd06466 p23_CS_SGT1_like p23_l 99.9 3.6E-21 7.8E-26 138.7 10.1 84 177-260 1-84 (84)
7 cd06490 p23_NCB5OR p23_like do 99.9 3.7E-21 8.1E-26 139.0 9.8 83 176-260 1-87 (87)
8 cd06468 p23_CacyBP p23_like do 99.9 4.8E-21 1E-25 140.5 10.4 86 175-260 3-92 (92)
9 cd06465 p23_hB-ind1_like p23_l 99.8 1.3E-20 2.8E-25 142.3 10.5 92 175-268 2-95 (108)
10 COG5091 SGT1 Suppressor of G2 99.8 2.6E-20 5.7E-25 155.8 11.2 248 9-267 2-271 (368)
11 cd00237 p23 p23 binds heat sho 99.8 7.2E-20 1.6E-24 136.6 10.6 90 175-266 3-93 (106)
12 cd06493 p23_NUDCD1_like p23_NU 99.8 9.8E-19 2.1E-23 126.1 9.4 81 176-259 1-84 (85)
13 PF04969 CS: CS domain; Inter 99.8 1.5E-18 3.2E-23 123.2 9.3 77 174-250 1-79 (79)
14 cd06469 p23_DYX1C1_like p23_li 99.8 2.5E-18 5.4E-23 122.0 9.1 78 178-260 1-78 (78)
15 cd06467 p23_NUDC_like p23_like 99.8 4.6E-18 1E-22 122.7 9.5 81 176-259 1-84 (85)
16 cd06463 p23_like Proteins cont 99.8 7.6E-18 1.6E-22 120.8 10.1 83 178-260 1-84 (84)
17 KOG0548 Molecular co-chaperone 99.7 2.9E-17 6.3E-22 149.4 14.4 116 2-117 358-473 (539)
18 cd06494 p23_NUDCD2_like p23-li 99.7 1.8E-17 3.9E-22 120.7 8.9 82 175-260 7-93 (93)
19 PRK15359 type III secretion sy 99.7 5.4E-16 1.2E-20 123.1 15.5 117 4-120 26-142 (144)
20 KOG1667 Zn2+-binding protein M 99.7 3E-16 6.5E-21 129.8 8.9 91 172-262 213-304 (320)
21 PRK15363 pathogenicity island 99.6 1.2E-14 2.7E-19 114.8 15.0 118 3-120 36-153 (157)
22 KOG0548 Molecular co-chaperone 99.6 2.1E-15 4.5E-20 137.5 11.5 114 1-114 1-114 (539)
23 KOG0543 FKBP-type peptidyl-pro 99.6 6.8E-15 1.5E-19 130.8 14.5 119 2-120 208-341 (397)
24 cd06492 p23_mNUDC_like p23-lik 99.6 2.4E-15 5.2E-20 108.5 9.5 81 176-259 1-86 (87)
25 cd06495 p23_NUDCD3_like p23-li 99.6 3.3E-15 7.1E-20 110.4 9.7 88 175-262 6-96 (102)
26 KOG3260 Calcyclin-binding prot 99.6 2E-15 4.4E-20 118.8 9.0 85 176-260 77-162 (224)
27 TIGR02552 LcrH_SycD type III s 99.6 4.4E-14 9.5E-19 110.3 15.2 116 3-118 18-133 (135)
28 KOG4648 Uncharacterized conser 99.6 1.9E-14 4.1E-19 125.2 10.1 118 3-120 98-215 (536)
29 KOG4234 TPR repeat-containing 99.6 7.9E-14 1.7E-18 113.1 13.0 119 2-120 95-218 (271)
30 PRK11189 lipoprotein NlpI; Pro 99.5 3.9E-13 8.5E-18 119.2 15.7 108 2-109 64-171 (296)
31 KOG0376 Serine-threonine phosp 99.5 7.1E-14 1.5E-18 126.5 8.9 121 1-121 3-123 (476)
32 PRK10370 formate-dependent nit 99.5 1.2E-12 2.6E-17 109.4 15.2 111 2-112 73-186 (198)
33 KOG0550 Molecular chaperone (D 99.5 6.2E-13 1.3E-17 118.1 11.6 116 4-120 251-370 (486)
34 KOG0547 Translocase of outer m 99.4 1.6E-12 3.4E-17 117.7 12.8 118 2-119 115-233 (606)
35 TIGR02795 tol_pal_ybgF tol-pal 99.4 6.2E-12 1.3E-16 95.3 13.6 107 2-108 2-114 (119)
36 KOG3158 HSP90 co-chaperone p23 99.4 5.2E-13 1.1E-17 105.0 7.0 91 175-267 9-101 (180)
37 PRK15331 chaperone protein Sic 99.4 9.1E-12 2E-16 99.0 13.4 117 3-120 38-154 (165)
38 TIGR00990 3a0801s09 mitochondr 99.4 6.7E-12 1.4E-16 122.1 15.2 115 4-118 333-447 (615)
39 TIGR00990 3a0801s09 mitochondr 99.4 8.5E-12 1.8E-16 121.4 15.5 118 3-120 366-483 (615)
40 cd00189 TPR Tetratricopeptide 99.4 1.9E-11 4.1E-16 86.8 12.8 99 4-102 2-100 (100)
41 KOG2265 Nuclear distribution p 99.4 1.6E-12 3.4E-17 102.6 6.7 86 174-262 19-108 (179)
42 KOG4642 Chaperone-dependent E3 99.3 4.7E-12 1E-16 105.3 8.8 99 1-99 9-107 (284)
43 KOG4626 O-linked N-acetylgluco 99.3 4.3E-12 9.3E-17 117.8 9.0 113 3-115 253-365 (966)
44 PF13414 TPR_11: TPR repeat; P 99.3 7.1E-12 1.5E-16 86.3 7.7 66 36-101 3-69 (69)
45 PF13414 TPR_11: TPR repeat; P 99.3 1.2E-11 2.6E-16 85.2 8.4 66 2-67 3-69 (69)
46 COG3063 PilF Tfp pilus assembl 99.3 4.6E-11 1E-15 99.2 12.5 119 2-120 35-155 (250)
47 PRK15179 Vi polysaccharide bio 99.3 4.6E-11 1E-15 116.4 14.7 119 2-120 86-204 (694)
48 KOG4626 O-linked N-acetylgluco 99.3 2.3E-11 5E-16 113.0 11.7 112 2-113 388-499 (966)
49 KOG1155 Anaphase-promoting com 99.3 3.3E-11 7.2E-16 108.6 12.4 112 9-120 337-448 (559)
50 PRK02603 photosystem I assembl 99.3 8.9E-11 1.9E-15 95.8 13.8 110 2-111 35-162 (172)
51 KOG1126 DNA-binding cell divis 99.3 7E-12 1.5E-16 117.1 8.0 118 3-120 422-539 (638)
52 PRK12370 invasion protein regu 99.3 6.7E-11 1.5E-15 113.7 14.6 112 5-116 341-453 (553)
53 PF12895 Apc3: Anaphase-promot 99.3 1.2E-11 2.5E-16 88.8 7.0 82 14-96 1-84 (84)
54 KOG0551 Hsp90 co-chaperone CNS 99.3 3.8E-11 8.3E-16 104.2 11.2 101 2-102 81-185 (390)
55 KOG1155 Anaphase-promoting com 99.3 1.2E-10 2.6E-15 105.1 14.4 118 3-120 365-482 (559)
56 TIGR02521 type_IV_pilW type IV 99.3 1.8E-10 3.9E-15 96.3 14.8 117 2-118 31-149 (234)
57 PRK15359 type III secretion sy 99.3 4.6E-11 1E-15 94.7 10.6 97 21-120 12-108 (144)
58 PRK09782 bacteriophage N4 rece 99.3 1.2E-10 2.6E-15 117.6 16.1 111 3-113 610-720 (987)
59 KOG1126 DNA-binding cell divis 99.3 3.8E-11 8.3E-16 112.2 11.4 118 3-120 490-607 (638)
60 cd00298 ACD_sHsps_p23-like Thi 99.3 1.8E-11 3.9E-16 86.0 7.2 73 178-250 1-80 (80)
61 KOG0547 Translocase of outer m 99.3 5.2E-11 1.1E-15 108.0 11.6 110 1-110 325-434 (606)
62 PRK10370 formate-dependent nit 99.3 1.1E-10 2.3E-15 97.6 12.6 106 15-120 52-160 (198)
63 PRK12370 invasion protein regu 99.2 1.4E-10 3E-15 111.5 14.9 94 16-109 318-411 (553)
64 TIGR03302 OM_YfiO outer membra 99.2 3E-10 6.6E-15 97.0 15.3 109 2-110 33-155 (235)
65 KOG0624 dsRNA-activated protei 99.2 6.8E-11 1.5E-15 103.2 10.8 103 3-105 39-141 (504)
66 KOG1125 TPR repeat-containing 99.2 4.2E-11 9.2E-16 110.4 9.5 116 4-119 432-557 (579)
67 TIGR02521 type_IV_pilW type IV 99.2 5.8E-10 1.3E-14 93.2 14.9 118 3-120 66-185 (234)
68 TIGR02552 LcrH_SycD type III s 99.2 2.6E-10 5.7E-15 88.8 11.4 98 23-120 4-101 (135)
69 COG5010 TadD Flp pilus assembl 99.2 5.2E-10 1.1E-14 94.6 13.4 115 6-120 104-218 (257)
70 PF13429 TPR_15: Tetratricopep 99.2 1.4E-10 3.1E-15 101.8 10.1 117 4-120 148-264 (280)
71 KOG0545 Aryl-hydrocarbon recep 99.2 7.6E-10 1.6E-14 92.7 13.4 117 4-120 180-315 (329)
72 PRK10803 tol-pal system protei 99.2 1.2E-09 2.6E-14 95.0 15.2 107 3-109 143-256 (263)
73 PRK09782 bacteriophage N4 rece 99.2 5.4E-10 1.2E-14 112.9 15.0 111 9-120 583-693 (987)
74 PF13432 TPR_16: Tetratricopep 99.2 1.9E-10 4.2E-15 78.1 7.8 62 8-69 3-64 (65)
75 CHL00033 ycf3 photosystem I as 99.2 1E-09 2.2E-14 89.1 13.5 103 2-104 35-154 (168)
76 PF13432 TPR_16: Tetratricopep 99.2 1.7E-10 3.8E-15 78.4 7.5 65 40-104 1-65 (65)
77 COG4235 Cytochrome c biogenesi 99.1 2.6E-09 5.6E-14 92.4 16.0 118 2-119 156-276 (287)
78 COG4783 Putative Zn-dependent 99.1 1.1E-09 2.4E-14 99.7 14.3 117 4-120 308-424 (484)
79 PLN02789 farnesyltranstransfer 99.1 1.6E-09 3.4E-14 96.9 14.7 115 3-117 72-189 (320)
80 PF13512 TPR_18: Tetratricopep 99.1 2.7E-09 5.8E-14 83.2 13.9 106 2-107 10-136 (142)
81 PRK15174 Vi polysaccharide exp 99.1 1E-09 2.2E-14 107.5 14.5 102 5-106 249-354 (656)
82 PRK15174 Vi polysaccharide exp 99.1 1E-09 2.2E-14 107.5 14.4 114 7-120 217-334 (656)
83 COG3063 PilF Tfp pilus assembl 99.1 1.2E-09 2.6E-14 90.8 12.2 117 3-119 70-188 (250)
84 KOG2076 RNA polymerase III tra 99.1 2.7E-09 5.8E-14 102.9 15.2 118 3-120 140-257 (895)
85 PRK15179 Vi polysaccharide bio 99.1 4.1E-09 8.8E-14 102.9 15.7 115 3-117 121-236 (694)
86 TIGR03302 OM_YfiO outer membra 99.1 3.1E-09 6.7E-14 90.7 13.0 118 3-120 71-219 (235)
87 KOG4555 TPR repeat-containing 99.0 5.2E-09 1.1E-13 79.7 12.0 99 4-102 45-147 (175)
88 PRK11189 lipoprotein NlpI; Pro 99.0 2.8E-09 6.1E-14 94.6 12.3 106 15-120 39-148 (296)
89 PRK10049 pgaA outer membrane p 99.0 5.6E-09 1.2E-13 104.1 15.7 112 3-115 50-161 (765)
90 TIGR02917 PEP_TPR_lipo putativ 99.0 4.5E-09 9.9E-14 104.7 15.0 116 3-118 126-241 (899)
91 PF13525 YfiO: Outer membrane 99.0 1.8E-08 3.8E-13 84.6 16.0 119 2-120 5-143 (203)
92 PF14559 TPR_19: Tetratricopep 99.0 2E-09 4.3E-14 73.6 7.4 67 12-78 1-67 (68)
93 PRK15363 pathogenicity island 99.0 6E-09 1.3E-13 82.6 10.7 92 29-120 27-119 (157)
94 PRK11447 cellulose synthase su 99.0 9.2E-09 2E-13 106.9 15.2 110 4-113 305-428 (1157)
95 PRK10866 outer membrane biogen 99.0 2.9E-08 6.4E-13 85.5 15.8 119 2-120 32-177 (243)
96 PLN02789 farnesyltranstransfer 99.0 8.4E-09 1.8E-13 92.2 12.7 109 12-120 47-158 (320)
97 TIGR02917 PEP_TPR_lipo putativ 99.0 1.1E-08 2.3E-13 102.1 14.6 114 5-119 773-886 (899)
98 PRK11447 cellulose synthase su 99.0 1E-08 2.3E-13 106.5 14.8 109 7-115 356-506 (1157)
99 PF13371 TPR_9: Tetratricopept 99.0 5.5E-09 1.2E-13 72.5 8.8 65 10-74 3-67 (73)
100 PF13371 TPR_9: Tetratricopept 99.0 3.7E-09 7.9E-14 73.4 7.7 70 43-112 2-71 (73)
101 PRK10049 pgaA outer membrane p 98.9 2E-08 4.2E-13 100.2 15.4 109 4-112 361-469 (765)
102 COG1729 Uncharacterized protei 98.9 3.1E-08 6.6E-13 84.8 14.2 109 3-111 142-256 (262)
103 PRK11788 tetratricopeptide rep 98.9 1.9E-08 4.1E-13 92.0 13.9 114 5-118 110-228 (389)
104 PRK11788 tetratricopeptide rep 98.9 2.4E-08 5.3E-13 91.3 14.5 98 7-104 185-283 (389)
105 KOG4162 Predicted calmodulin-b 98.9 1.1E-08 2.3E-13 97.4 11.9 102 3-104 685-788 (799)
106 KOG1125 TPR repeat-containing 98.9 1.8E-08 3.9E-13 93.3 11.8 108 6-113 289-473 (579)
107 KOG1173 Anaphase-promoting com 98.9 1.8E-08 4E-13 93.1 11.8 112 5-116 417-535 (611)
108 PF14559 TPR_19: Tetratricopep 98.9 7E-09 1.5E-13 70.9 6.8 67 46-112 1-67 (68)
109 PF09976 TPR_21: Tetratricopep 98.9 3.2E-08 6.9E-13 78.4 11.6 92 4-95 13-110 (145)
110 PF12688 TPR_5: Tetratrico pep 98.9 7.9E-08 1.7E-12 73.5 13.0 97 2-98 1-103 (120)
111 KOG1308 Hsp70-interacting prot 98.9 1.3E-09 2.8E-14 95.2 3.2 113 1-114 113-225 (377)
112 PF06552 TOM20_plant: Plant sp 98.9 5.2E-08 1.1E-12 78.4 11.8 98 18-115 7-125 (186)
113 COG5010 TadD Flp pilus assembl 98.8 4.1E-08 8.9E-13 83.1 11.7 115 6-120 70-184 (257)
114 KOG3060 Uncharacterized conser 98.8 1.4E-07 3.1E-12 79.5 14.6 115 6-120 90-241 (289)
115 PF13429 TPR_15: Tetratricopep 98.8 2.2E-08 4.8E-13 87.9 10.4 115 6-120 114-230 (280)
116 PLN03088 SGT1, suppressor of 98.8 3.9E-08 8.5E-13 89.5 11.7 82 3-84 37-118 (356)
117 PLN03098 LPA1 LOW PSII ACCUMUL 98.8 2.4E-08 5.2E-13 91.2 9.3 63 3-65 76-141 (453)
118 KOG1156 N-terminal acetyltrans 98.8 7.3E-08 1.6E-12 90.4 12.0 117 4-120 9-125 (700)
119 COG4783 Putative Zn-dependent 98.8 1.6E-07 3.5E-12 85.8 13.8 109 7-115 345-453 (484)
120 CHL00033 ycf3 photosystem I as 98.8 7E-08 1.5E-12 78.3 10.3 111 8-118 5-120 (168)
121 PLN03098 LPA1 LOW PSII ACCUMUL 98.8 1.3E-07 2.8E-12 86.5 12.6 69 31-99 70-141 (453)
122 KOG2003 TPR repeat-containing 98.8 2.9E-08 6.2E-13 89.8 8.2 118 3-120 491-608 (840)
123 PRK10153 DNA-binding transcrip 98.7 2.7E-07 5.8E-12 87.7 14.7 100 4-104 341-487 (517)
124 KOG0624 dsRNA-activated protei 98.7 4.3E-07 9.3E-12 79.8 14.5 104 5-108 158-261 (504)
125 PRK14574 hmsH outer membrane p 98.7 1.9E-07 4E-12 93.1 13.9 112 2-113 34-145 (822)
126 cd00189 TPR Tetratricopeptide 98.7 3.2E-07 7E-12 64.5 11.1 83 38-120 2-84 (100)
127 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 3.1E-07 6.8E-12 84.0 13.0 89 8-96 206-294 (395)
128 KOG0550 Molecular chaperone (D 98.7 8.2E-08 1.8E-12 85.9 8.8 119 2-120 203-337 (486)
129 KOG0543 FKBP-type peptidyl-pro 98.7 3E-07 6.4E-12 82.5 12.3 95 5-99 260-355 (397)
130 KOG1128 Uncharacterized conser 98.7 6.9E-08 1.5E-12 91.7 8.7 106 2-107 485-590 (777)
131 COG4785 NlpI Lipoprotein NlpI, 98.7 1.1E-07 2.3E-12 78.8 8.4 114 2-115 65-178 (297)
132 KOG2002 TPR-containing nuclear 98.6 3.4E-07 7.4E-12 89.3 12.6 113 2-114 307-424 (1018)
133 TIGR00540 hemY_coli hemY prote 98.6 1.4E-06 3E-11 80.9 15.8 117 4-120 86-203 (409)
134 KOG0553 TPR repeat-containing 98.6 2.1E-07 4.5E-12 80.4 9.4 84 4-87 117-200 (304)
135 cd05804 StaR_like StaR_like; a 98.6 4.1E-07 8.8E-12 82.2 11.9 97 5-101 117-217 (355)
136 PRK14574 hmsH outer membrane p 98.6 6E-07 1.3E-11 89.5 14.0 113 5-118 105-217 (822)
137 PF09976 TPR_21: Tetratricopep 98.6 1.7E-06 3.6E-11 68.5 13.8 93 4-97 50-145 (145)
138 KOG3060 Uncharacterized conser 98.6 2.2E-06 4.8E-11 72.5 14.2 86 3-88 155-243 (289)
139 PRK11906 transcriptional regul 98.6 1.2E-06 2.6E-11 80.4 13.4 116 4-119 257-387 (458)
140 KOG1129 TPR repeat-containing 98.6 1.5E-07 3.2E-12 82.2 6.9 108 13-120 335-445 (478)
141 PRK02603 photosystem I assembl 98.6 4.3E-07 9.3E-12 74.0 9.4 87 33-119 32-121 (172)
142 PF13424 TPR_12: Tetratricopep 98.5 1.1E-07 2.4E-12 66.8 4.8 65 35-99 4-75 (78)
143 KOG1129 TPR repeat-containing 98.5 3.5E-07 7.6E-12 79.9 8.7 119 2-120 256-374 (478)
144 TIGR02795 tol_pal_ybgF tol-pal 98.5 1.1E-06 2.4E-11 66.1 10.2 84 36-119 2-91 (119)
145 COG4235 Cytochrome c biogenesi 98.5 1.8E-06 4E-11 74.8 12.5 105 16-120 136-243 (287)
146 KOG2002 TPR-containing nuclear 98.5 1.2E-06 2.7E-11 85.6 12.3 116 3-118 271-390 (1018)
147 PRK11906 transcriptional regul 98.5 2E-06 4.3E-11 79.0 12.9 91 15-105 317-407 (458)
148 KOG2076 RNA polymerase III tra 98.5 4.2E-06 9.2E-11 81.3 15.5 99 3-101 174-272 (895)
149 TIGR00540 hemY_coli hemY prote 98.5 1.7E-06 3.6E-11 80.3 12.6 116 4-120 265-386 (409)
150 PRK10747 putative protoheme IX 98.5 5.8E-06 1.3E-10 76.4 15.9 112 6-117 88-200 (398)
151 cd05804 StaR_like StaR_like; a 98.4 2.8E-06 6E-11 76.8 12.3 117 4-120 45-202 (355)
152 PRK14720 transcript cleavage f 98.4 2.7E-06 5.8E-11 84.6 12.9 113 3-117 32-163 (906)
153 COG2956 Predicted N-acetylgluc 98.4 4.2E-06 9E-11 73.1 12.4 116 5-120 144-265 (389)
154 COG4105 ComL DNA uptake lipopr 98.4 1.1E-05 2.4E-10 68.7 14.5 119 2-120 34-169 (254)
155 KOG1310 WD40 repeat protein [G 98.4 1.1E-06 2.3E-11 81.1 8.9 105 2-106 374-481 (758)
156 KOG4162 Predicted calmodulin-b 98.4 3.4E-06 7.5E-11 80.8 12.5 117 4-120 652-770 (799)
157 PF13424 TPR_12: Tetratricopep 98.4 6.1E-07 1.3E-11 63.0 5.7 65 2-66 5-76 (78)
158 KOG1173 Anaphase-promoting com 98.4 3.1E-06 6.8E-11 78.6 11.2 105 3-107 313-417 (611)
159 KOG1174 Anaphase-promoting com 98.4 3E-06 6.5E-11 76.2 10.2 109 2-110 300-408 (564)
160 PRK10747 putative protoheme IX 98.4 6.6E-06 1.4E-10 76.1 12.9 113 4-120 265-377 (398)
161 PF12895 Apc3: Anaphase-promot 98.4 8.6E-07 1.9E-11 63.3 5.4 58 4-62 27-84 (84)
162 PRK15331 chaperone protein Sic 98.3 3.9E-06 8.4E-11 67.0 9.3 89 32-120 33-121 (165)
163 KOG0495 HAT repeat protein [RN 98.3 1.1E-05 2.4E-10 76.3 13.0 107 13-120 629-735 (913)
164 COG2956 Predicted N-acetylgluc 98.3 1.5E-05 3.2E-10 69.8 12.6 103 3-105 181-284 (389)
165 KOG2003 TPR repeat-containing 98.3 8.2E-06 1.8E-10 74.2 11.1 117 3-119 525-675 (840)
166 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 1.5E-05 3.3E-10 73.0 13.1 105 13-120 180-284 (395)
167 PF12569 NARP1: NMDA receptor- 98.3 2.2E-05 4.8E-10 74.5 14.0 95 6-100 198-292 (517)
168 PF13525 YfiO: Outer membrane 98.2 5.4E-05 1.2E-09 63.4 14.8 116 3-118 43-192 (203)
169 KOG1127 TPR repeat-containing 98.2 1.7E-05 3.6E-10 78.1 13.0 104 1-104 1-108 (1238)
170 KOG1174 Anaphase-promoting com 98.2 1.3E-05 2.9E-10 72.1 11.4 100 18-118 420-519 (564)
171 KOG1128 Uncharacterized conser 98.2 3.8E-06 8.2E-11 80.1 8.4 78 43-120 492-569 (777)
172 KOG0495 HAT repeat protein [RN 98.2 1.6E-05 3.5E-10 75.2 12.3 117 4-120 653-769 (913)
173 COG4700 Uncharacterized protei 98.2 4E-05 8.7E-10 62.3 12.7 101 4-104 91-194 (251)
174 PRK14720 transcript cleavage f 98.2 2.7E-05 5.8E-10 77.7 13.9 111 4-115 118-268 (906)
175 KOG1840 Kinesin light chain [C 98.2 8.9E-06 1.9E-10 76.6 10.1 97 4-100 201-313 (508)
176 KOG1840 Kinesin light chain [C 98.2 1.1E-05 2.3E-10 76.1 10.4 97 3-99 242-354 (508)
177 KOG4234 TPR repeat-containing 98.2 1.3E-05 2.9E-10 65.7 9.3 68 5-72 137-204 (271)
178 PF12688 TPR_5: Tetratrico pep 98.2 1.6E-05 3.5E-10 60.8 9.4 84 37-120 2-91 (120)
179 PF04733 Coatomer_E: Coatomer 98.2 2.2E-05 4.9E-10 69.3 11.5 90 17-106 182-272 (290)
180 PF13428 TPR_14: Tetratricopep 98.2 4.2E-06 9.1E-11 52.1 5.0 42 37-78 2-43 (44)
181 cd06472 ACD_ScHsp26_like Alpha 98.2 1.1E-05 2.4E-10 58.7 7.8 76 175-250 1-92 (92)
182 PF14938 SNAP: Soluble NSF att 98.1 2.7E-05 5.8E-10 68.7 10.8 103 2-104 114-230 (282)
183 PRK10866 outer membrane biogen 98.1 0.00016 3.5E-09 62.3 15.4 110 4-113 71-218 (243)
184 PF12569 NARP1: NMDA receptor- 98.1 0.0001 2.2E-09 70.1 15.1 70 36-105 194-263 (517)
185 KOG1156 N-terminal acetyltrans 98.1 3.5E-05 7.6E-10 72.8 11.7 109 7-115 46-154 (700)
186 KOG1127 TPR repeat-containing 98.1 1E-05 2.2E-10 79.6 8.2 114 4-117 564-677 (1238)
187 PF03704 BTAD: Bacterial trans 98.1 0.00013 2.9E-09 57.5 13.2 95 4-98 8-124 (146)
188 PF04733 Coatomer_E: Coatomer 98.1 4.8E-05 1E-09 67.3 11.4 114 6-119 135-250 (290)
189 PF00515 TPR_1: Tetratricopept 98.1 6.5E-06 1.4E-10 48.0 3.9 32 71-102 2-33 (34)
190 COG0071 IbpA Molecular chapero 98.1 2.4E-05 5.3E-10 62.0 8.4 80 174-253 41-135 (146)
191 PRK10803 tol-pal system protei 98.0 4.6E-05 1E-09 66.3 10.7 84 36-119 142-232 (263)
192 KOG4648 Uncharacterized conser 98.0 8.2E-06 1.8E-10 71.9 5.7 82 39-120 100-181 (536)
193 PF07719 TPR_2: Tetratricopept 98.0 1.1E-05 2.5E-10 46.8 4.6 33 71-103 2-34 (34)
194 PF13431 TPR_17: Tetratricopep 98.0 5E-06 1.1E-10 48.7 2.8 32 59-90 2-33 (34)
195 COG3118 Thioredoxin domain-con 98.0 0.00029 6.3E-09 61.2 14.2 98 4-101 136-267 (304)
196 PF00515 TPR_1: Tetratricopept 98.0 1.6E-05 3.5E-10 46.3 4.6 33 37-69 2-34 (34)
197 PF13428 TPR_14: Tetratricopep 98.0 1.6E-05 3.5E-10 49.4 4.6 43 70-112 1-43 (44)
198 KOG4340 Uncharacterized conser 98.0 0.00018 4E-09 62.6 12.3 110 11-124 19-128 (459)
199 PF13431 TPR_17: Tetratricopep 98.0 8.8E-06 1.9E-10 47.7 3.1 34 24-57 1-34 (34)
200 PF12968 DUF3856: Domain of Un 97.9 0.00044 9.6E-09 52.0 12.2 94 5-98 12-128 (144)
201 KOG2376 Signal recognition par 97.9 0.00022 4.8E-09 66.9 12.9 100 4-106 14-146 (652)
202 cd06464 ACD_sHsps-like Alpha-c 97.9 6.3E-05 1.4E-09 53.7 7.4 74 177-250 1-88 (88)
203 KOG4379 Uncharacterized conser 97.9 2.2E-05 4.7E-10 71.0 5.7 84 175-262 291-377 (596)
204 PF00011 HSP20: Hsp20/alpha cr 97.9 9.1E-05 2E-09 54.8 8.0 77 177-253 1-90 (102)
205 KOG3785 Uncharacterized conser 97.9 0.00017 3.7E-09 64.1 10.7 87 10-96 30-117 (557)
206 PF14853 Fis1_TPR_C: Fis1 C-te 97.8 9.3E-05 2E-09 47.9 6.7 49 71-119 2-50 (53)
207 cd06471 ACD_LpsHSP_like Group 97.8 8.8E-05 1.9E-09 54.0 7.4 75 175-250 2-93 (93)
208 PF07719 TPR_2: Tetratricopept 97.8 5E-05 1.1E-09 44.0 4.8 32 37-68 2-33 (34)
209 KOG3785 Uncharacterized conser 97.8 0.00031 6.7E-09 62.5 11.7 112 8-119 63-200 (557)
210 PF13512 TPR_18: Tetratricopep 97.8 0.0002 4.2E-09 56.0 9.3 72 35-106 9-83 (142)
211 KOG2376 Signal recognition par 97.8 0.00053 1.1E-08 64.5 13.5 90 6-98 83-203 (652)
212 PF14938 SNAP: Soluble NSF att 97.8 0.00012 2.6E-09 64.5 9.1 96 6-101 78-186 (282)
213 COG1729 Uncharacterized protei 97.8 0.0002 4.4E-09 61.5 9.9 82 39-120 144-231 (262)
214 KOG1130 Predicted G-alpha GTPa 97.8 1.7E-05 3.8E-10 71.4 3.0 97 4-100 197-305 (639)
215 PRK10153 DNA-binding transcrip 97.7 0.00018 3.8E-09 68.7 9.8 67 4-71 422-488 (517)
216 PRK10941 hypothetical protein; 97.7 0.0004 8.8E-09 60.5 10.5 78 37-114 182-259 (269)
217 KOG2053 Mitochondrial inherita 97.6 0.0012 2.7E-08 64.7 14.0 109 8-117 15-123 (932)
218 KOG3364 Membrane protein invol 97.6 0.0015 3.3E-08 50.3 11.3 86 35-120 31-121 (149)
219 KOG2471 TPR repeat-containing 97.6 0.00015 3.3E-09 66.7 6.8 116 3-118 241-383 (696)
220 KOG4340 Uncharacterized conser 97.6 0.00023 4.9E-09 62.0 7.5 61 4-64 146-206 (459)
221 COG3071 HemY Uncharacterized e 97.6 0.0024 5.2E-08 57.5 14.2 117 4-120 86-203 (400)
222 COG0457 NrfG FOG: TPR repeat [ 97.6 0.0032 6.9E-08 50.7 14.0 98 5-102 98-199 (291)
223 KOG0546 HSP90 co-chaperone CPR 97.5 0.00013 2.8E-09 64.7 5.1 117 4-120 224-359 (372)
224 COG4785 NlpI Lipoprotein NlpI, 97.5 0.00067 1.5E-08 56.6 8.5 70 1-70 98-167 (297)
225 PF05843 Suf: Suppressor of fo 97.4 0.004 8.7E-08 54.8 13.2 101 4-104 3-104 (280)
226 PF06552 TOM20_plant: Plant sp 97.4 0.0015 3.3E-08 52.9 9.4 55 16-70 49-114 (186)
227 KOG4814 Uncharacterized conser 97.4 0.0018 3.8E-08 61.6 11.1 96 4-99 356-457 (872)
228 PF13181 TPR_8: Tetratricopept 97.4 0.00028 6E-09 40.8 3.7 31 71-101 2-32 (34)
229 PF04781 DUF627: Protein of un 97.4 0.0033 7.2E-08 46.8 10.0 93 8-100 2-108 (111)
230 COG2976 Uncharacterized protei 97.3 0.0054 1.2E-07 50.4 11.9 98 4-102 91-191 (207)
231 KOG3824 Huntingtin interacting 97.3 0.00079 1.7E-08 58.9 7.4 76 4-79 118-193 (472)
232 KOG2796 Uncharacterized conser 97.3 0.0018 3.9E-08 55.5 9.0 99 6-104 216-320 (366)
233 COG0457 NrfG FOG: TPR repeat [ 97.3 0.0076 1.6E-07 48.4 12.6 93 11-103 139-235 (291)
234 PF15015 NYD-SP12_N: Spermatog 97.3 0.0026 5.7E-08 57.8 10.1 91 6-96 180-288 (569)
235 KOG0545 Aryl-hydrocarbon recep 97.2 0.0047 1E-07 52.5 10.9 71 5-75 233-303 (329)
236 PRK10941 hypothetical protein; 97.2 0.0036 7.7E-08 54.7 10.6 76 6-81 185-260 (269)
237 KOG4642 Chaperone-dependent E3 97.2 0.00052 1.1E-08 57.9 5.0 78 40-117 14-91 (284)
238 cd06479 ACD_HspB7_like Alpha c 97.2 0.002 4.3E-08 45.6 7.3 72 179-250 4-81 (81)
239 COG3071 HemY Uncharacterized e 97.2 0.0036 7.8E-08 56.4 10.1 110 7-120 268-377 (400)
240 cd06526 metazoan_ACD Alpha-cry 97.2 0.0018 4E-08 46.0 6.8 68 183-250 7-83 (83)
241 PF13181 TPR_8: Tetratricopept 97.2 0.00076 1.6E-08 38.9 4.0 30 38-67 3-32 (34)
242 KOG4555 TPR repeat-containing 97.1 0.0022 4.7E-08 49.4 7.2 65 39-103 46-110 (175)
243 PF13174 TPR_6: Tetratricopept 97.1 0.00098 2.1E-08 38.0 4.2 31 72-102 2-32 (33)
244 cd06475 ACD_HspB1_like Alpha c 97.1 0.0026 5.6E-08 45.6 7.1 73 176-248 3-84 (86)
245 PF09613 HrpB1_HrpK: Bacterial 97.1 0.039 8.4E-07 44.1 14.3 109 3-113 11-119 (160)
246 cd06497 ACD_alphaA-crystallin_ 97.1 0.0027 5.9E-08 45.5 7.0 72 179-250 6-86 (86)
247 PF03704 BTAD: Bacterial trans 97.1 0.0045 9.7E-08 48.6 8.9 61 4-64 64-124 (146)
248 KOG3081 Vesicle coat complex C 97.1 0.016 3.5E-07 49.9 12.5 80 39-118 172-255 (299)
249 cd06498 ACD_alphaB-crystallin_ 97.1 0.0033 7.1E-08 44.9 7.2 72 180-251 4-84 (84)
250 PF10300 DUF3808: Protein of u 97.1 0.0065 1.4E-07 57.5 11.3 104 15-118 246-354 (468)
251 PF14853 Fis1_TPR_C: Fis1 C-te 97.1 0.0039 8.6E-08 40.2 6.8 43 37-79 2-44 (53)
252 KOG1130 Predicted G-alpha GTPa 97.0 0.0018 3.8E-08 58.8 6.9 96 4-99 237-344 (639)
253 PF10300 DUF3808: Protein of u 97.0 0.006 1.3E-07 57.7 10.8 97 5-101 270-378 (468)
254 PF05843 Suf: Suppressor of fo 97.0 0.019 4E-07 50.6 12.9 108 5-112 38-149 (280)
255 COG4105 ComL DNA uptake lipopr 97.0 0.049 1.1E-06 46.7 14.8 115 3-117 72-214 (254)
256 KOG3081 Vesicle coat complex C 97.0 0.023 4.9E-07 48.9 12.6 90 15-104 186-276 (299)
257 COG4700 Uncharacterized protei 97.0 0.024 5.3E-07 46.4 12.1 116 4-120 126-248 (251)
258 KOG0551 Hsp90 co-chaperone CNS 96.9 0.0097 2.1E-07 52.7 10.1 84 36-119 81-168 (390)
259 KOG1915 Cell cycle control pro 96.9 0.019 4.1E-07 53.2 12.2 101 4-104 75-175 (677)
260 smart00028 TPR Tetratricopepti 96.9 0.0022 4.7E-08 35.2 4.2 32 71-102 2-33 (34)
261 KOG4507 Uncharacterized conser 96.9 0.0061 1.3E-07 57.6 9.1 102 14-115 619-721 (886)
262 KOG2396 HAT (Half-A-TPR) repea 96.9 0.016 3.6E-07 53.8 11.6 91 19-109 88-179 (568)
263 cd06478 ACD_HspB4-5-6 Alpha-cr 96.8 0.0055 1.2E-07 43.6 6.8 71 180-250 4-83 (83)
264 PF13174 TPR_6: Tetratricopept 96.8 0.0027 5.8E-08 36.1 4.2 30 5-34 3-32 (33)
265 KOG2796 Uncharacterized conser 96.8 0.022 4.8E-07 49.0 11.0 116 5-120 180-302 (366)
266 KOG0376 Serine-threonine phosp 96.8 0.0022 4.7E-08 59.2 5.3 78 6-83 42-119 (476)
267 PLN03081 pentatricopeptide (PP 96.8 0.02 4.3E-07 56.9 12.6 91 7-99 467-557 (697)
268 KOG1941 Acetylcholine receptor 96.7 0.0057 1.2E-07 54.7 7.4 95 5-99 125-235 (518)
269 cd06470 ACD_IbpA-B_like Alpha- 96.7 0.013 2.7E-07 42.4 8.0 73 176-250 3-90 (90)
270 KOG1915 Cell cycle control pro 96.7 0.03 6.5E-07 51.9 12.0 106 14-120 378-487 (677)
271 KOG4151 Myosin assembly protei 96.7 0.011 2.4E-07 57.6 9.6 115 3-117 54-174 (748)
272 PF14561 TPR_20: Tetratricopep 96.7 0.021 4.6E-07 41.2 8.9 48 22-69 8-55 (90)
273 PRK10743 heat shock protein Ib 96.7 0.014 3.1E-07 45.6 8.4 75 175-251 36-124 (137)
274 KOG2053 Mitochondrial inherita 96.7 0.048 1E-06 54.0 13.6 101 5-106 46-146 (932)
275 PF09986 DUF2225: Uncharacteri 96.6 0.033 7.2E-07 47.0 10.9 91 14-104 89-199 (214)
276 PRK04841 transcriptional regul 96.6 0.024 5.3E-07 57.8 12.0 93 7-99 457-560 (903)
277 KOG1586 Protein required for f 96.6 0.089 1.9E-06 44.6 12.8 114 5-118 116-245 (288)
278 KOG3824 Huntingtin interacting 96.5 0.012 2.5E-07 51.8 7.9 74 39-112 119-192 (472)
279 smart00028 TPR Tetratricopepti 96.5 0.0045 9.8E-08 33.9 3.7 31 38-68 3-33 (34)
280 COG4976 Predicted methyltransf 96.5 0.0041 8.9E-08 52.3 4.8 59 11-69 4-62 (287)
281 cd06476 ACD_HspB2_like Alpha c 96.5 0.015 3.3E-07 41.3 7.1 70 181-250 5-83 (83)
282 PF10602 RPN7: 26S proteasome 96.5 0.056 1.2E-06 44.2 11.3 98 3-100 37-143 (177)
283 PLN03218 maturation of RBCL 1; 96.5 0.093 2E-06 54.5 15.2 88 9-98 691-782 (1060)
284 PF13176 TPR_7: Tetratricopept 96.5 0.0043 9.2E-08 36.5 3.4 24 73-96 2-25 (36)
285 PRK04841 transcriptional regul 96.4 0.033 7.2E-07 56.8 11.9 94 6-99 495-602 (903)
286 PF04184 ST7: ST7 protein; In 96.4 0.041 8.9E-07 51.3 11.1 100 6-105 263-381 (539)
287 PLN03218 maturation of RBCL 1; 96.4 0.1 2.3E-06 54.1 14.9 88 10-98 550-642 (1060)
288 PF13176 TPR_7: Tetratricopept 96.4 0.0074 1.6E-07 35.5 4.1 29 38-66 1-29 (36)
289 PLN03081 pentatricopeptide (PP 96.3 0.027 5.9E-07 55.9 10.2 26 72-97 393-418 (697)
290 COG2912 Uncharacterized conser 96.3 0.027 5.8E-07 48.8 8.7 76 38-113 183-258 (269)
291 PRK11597 heat shock chaperone 96.3 0.027 5.7E-07 44.3 8.0 74 176-251 35-122 (142)
292 COG4976 Predicted methyltransf 96.3 0.0074 1.6E-07 50.8 4.8 63 44-106 3-65 (287)
293 TIGR02561 HrpB1_HrpK type III 96.2 0.065 1.4E-06 42.2 9.7 84 4-87 12-95 (153)
294 cd06481 ACD_HspB9_like Alpha c 96.2 0.021 4.7E-07 40.9 6.6 68 181-248 5-85 (87)
295 PF08190 PIH1: pre-RNA process 96.2 0.041 8.9E-07 49.4 9.9 66 181-249 259-327 (328)
296 KOG1070 rRNA processing protei 96.2 0.06 1.3E-06 55.8 11.5 108 7-114 1535-1644(1710)
297 KOG1586 Protein required for f 96.2 0.11 2.4E-06 44.1 11.3 97 8-104 79-188 (288)
298 PLN03077 Protein ECB2; Provisi 96.1 0.045 9.7E-07 55.7 10.9 103 10-114 597-701 (857)
299 KOG1585 Protein required for f 96.1 0.15 3.2E-06 43.6 12.0 100 4-103 33-143 (308)
300 PF14561 TPR_20: Tetratricopep 96.1 0.066 1.4E-06 38.6 8.5 65 55-119 7-73 (90)
301 PF09613 HrpB1_HrpK: Bacterial 96.0 0.11 2.3E-06 41.6 10.1 85 36-120 10-94 (160)
302 PRK13184 pknD serine/threonine 96.0 0.097 2.1E-06 53.3 12.2 111 9-120 482-602 (932)
303 KOG2471 TPR repeat-containing 96.0 0.01 2.2E-07 55.1 4.6 78 6-83 287-382 (696)
304 KOG2610 Uncharacterized conser 95.9 0.057 1.2E-06 48.1 9.1 55 41-95 180-234 (491)
305 KOG1308 Hsp70-interacting prot 95.9 0.0019 4E-08 57.3 -0.1 75 46-120 124-198 (377)
306 PLN03077 Protein ECB2; Provisi 95.9 0.098 2.1E-06 53.3 12.0 107 4-113 556-667 (857)
307 KOG1585 Protein required for f 95.9 0.084 1.8E-06 45.1 9.3 94 6-99 114-219 (308)
308 PF13281 DUF4071: Domain of un 95.8 0.33 7.1E-06 44.3 13.8 99 6-104 183-339 (374)
309 PF10579 Rapsyn_N: Rapsyn N-te 95.8 0.09 2E-06 36.7 7.9 64 2-65 6-72 (80)
310 PF04910 Tcf25: Transcriptiona 95.8 0.18 3.8E-06 46.1 12.0 78 28-105 32-139 (360)
311 KOG0530 Protein farnesyltransf 95.7 0.31 6.7E-06 42.1 12.3 105 15-119 56-162 (318)
312 COG2912 Uncharacterized conser 95.7 0.052 1.1E-06 47.0 7.7 72 9-80 188-259 (269)
313 KOG2610 Uncharacterized conser 95.7 0.17 3.6E-06 45.2 10.9 100 7-106 108-211 (491)
314 PF02259 FAT: FAT domain; Int 95.6 0.32 7E-06 43.5 13.3 119 2-120 146-308 (352)
315 PF04184 ST7: ST7 protein; In 95.6 0.15 3.2E-06 47.8 10.7 35 10-44 176-210 (539)
316 COG5191 Uncharacterized conser 95.6 0.034 7.3E-07 49.0 6.2 87 24-110 95-182 (435)
317 KOG1941 Acetylcholine receptor 95.3 0.096 2.1E-06 47.2 8.0 94 6-99 166-275 (518)
318 PF07079 DUF1347: Protein of u 95.2 0.67 1.4E-05 43.1 13.4 91 5-96 382-521 (549)
319 PF13281 DUF4071: Domain of un 95.2 0.43 9.3E-06 43.6 12.2 94 9-102 148-258 (374)
320 cd06482 ACD_HspB10 Alpha cryst 95.1 0.12 2.6E-06 37.1 6.8 66 181-246 6-83 (87)
321 PF12862 Apc5: Anaphase-promot 95.1 0.16 3.6E-06 36.7 7.8 56 11-66 7-71 (94)
322 KOG3364 Membrane protein invol 95.1 0.3 6.5E-06 37.9 9.3 76 4-79 34-114 (149)
323 TIGR02561 HrpB1_HrpK type III 94.9 0.31 6.7E-06 38.5 9.2 84 37-120 11-94 (153)
324 KOG4814 Uncharacterized conser 94.9 0.2 4.3E-06 48.2 9.4 73 37-109 355-433 (872)
325 cd06477 ACD_HspB3_Like Alpha c 94.9 0.22 4.7E-06 35.3 7.6 68 180-247 4-80 (83)
326 PF13374 TPR_10: Tetratricopep 94.6 0.088 1.9E-06 31.3 4.4 28 38-65 4-31 (42)
327 PF08631 SPO22: Meiosis protei 94.5 1.9 4.1E-05 37.8 14.4 100 2-101 35-152 (278)
328 KOG1070 rRNA processing protei 94.5 0.59 1.3E-05 48.8 12.2 98 4-101 1566-1665(1710)
329 PF02259 FAT: FAT domain; Int 94.4 0.79 1.7E-05 41.0 12.1 99 4-102 186-341 (352)
330 COG3629 DnrI DNA-binding trans 94.3 0.66 1.4E-05 40.7 10.8 64 36-99 153-216 (280)
331 COG3898 Uncharacterized membra 94.3 0.61 1.3E-05 42.6 10.7 91 6-98 124-216 (531)
332 COG0790 FOG: TPR repeat, SEL1 94.2 1.8 4E-05 37.8 13.8 104 4-111 111-230 (292)
333 PF13374 TPR_10: Tetratricopep 94.0 0.11 2.4E-06 30.8 4.0 29 71-99 3-31 (42)
334 PF08424 NRDE-2: NRDE-2, neces 94.0 0.88 1.9E-05 40.8 11.3 83 24-106 7-101 (321)
335 PF12862 Apc5: Anaphase-promot 93.9 0.27 5.9E-06 35.6 6.6 58 44-101 6-72 (94)
336 COG3914 Spy Predicted O-linked 93.9 1 2.2E-05 43.1 11.7 101 9-109 74-181 (620)
337 PRK15180 Vi polysaccharide bio 93.7 0.66 1.4E-05 43.5 9.9 95 10-104 297-391 (831)
338 COG2976 Uncharacterized protei 93.6 1.9 4E-05 35.7 11.4 59 38-96 91-152 (207)
339 PF14863 Alkyl_sulf_dimr: Alky 93.5 0.3 6.4E-06 38.4 6.4 52 36-87 70-121 (141)
340 KOG2047 mRNA splicing factor [ 93.4 1.6 3.5E-05 42.4 12.2 92 10-101 485-581 (835)
341 PF04910 Tcf25: Transcriptiona 93.4 0.96 2.1E-05 41.3 10.7 99 4-102 105-225 (360)
342 PF09986 DUF2225: Uncharacteri 93.1 1.3 2.9E-05 37.3 10.3 61 18-78 141-208 (214)
343 PF08631 SPO22: Meiosis protei 93.1 2.2 4.8E-05 37.4 12.1 96 12-107 3-124 (278)
344 PF07720 TPR_3: Tetratricopept 93.0 0.31 6.8E-06 28.6 4.5 32 71-102 2-35 (36)
345 PF10516 SHNi-TPR: SHNi-TPR; 92.9 0.18 3.9E-06 30.1 3.4 28 38-65 3-30 (38)
346 cd02682 MIT_AAA_Arch MIT: doma 92.9 0.47 1E-05 32.9 5.9 31 1-31 5-35 (75)
347 KOG4507 Uncharacterized conser 92.8 0.4 8.7E-06 45.9 7.2 72 5-76 645-716 (886)
348 cd06480 ACD_HspB8_like Alpha-c 92.8 0.84 1.8E-05 33.0 7.4 69 180-248 12-89 (91)
349 PF05455 GvpH: GvpH; InterPro 92.6 0.86 1.9E-05 36.9 8.0 75 176-253 94-170 (177)
350 KOG1550 Extracellular protein 92.4 2.5 5.5E-05 40.9 12.5 92 5-100 291-394 (552)
351 PF12968 DUF3856: Domain of Un 92.4 3.3 7.2E-05 31.6 10.2 80 38-117 9-107 (144)
352 PHA02537 M terminase endonucle 92.3 0.41 8.9E-06 40.7 6.1 108 12-120 93-227 (230)
353 KOG1550 Extracellular protein 92.3 2.4 5.1E-05 41.1 12.1 95 15-115 262-371 (552)
354 KOG2396 HAT (Half-A-TPR) repea 92.0 1.1 2.4E-05 42.2 8.9 66 10-75 113-179 (568)
355 COG3898 Uncharacterized membra 91.9 4.9 0.00011 37.0 12.6 93 11-104 197-297 (531)
356 KOG0530 Protein farnesyltransf 91.9 2.7 5.8E-05 36.5 10.5 90 16-105 92-182 (318)
357 PF10516 SHNi-TPR: SHNi-TPR; 91.7 0.29 6.4E-06 29.2 3.3 30 71-100 2-31 (38)
358 COG3629 DnrI DNA-binding trans 91.5 1.3 2.7E-05 38.9 8.4 62 4-65 155-216 (280)
359 KOG2047 mRNA splicing factor [ 91.4 7.6 0.00017 37.9 13.9 108 2-110 425-551 (835)
360 COG5191 Uncharacterized conser 91.3 0.44 9.5E-06 42.2 5.2 71 6-76 111-182 (435)
361 PF08424 NRDE-2: NRDE-2, neces 91.3 3.5 7.6E-05 37.0 11.4 81 18-98 47-130 (321)
362 PF07720 TPR_3: Tetratricopept 91.2 0.79 1.7E-05 26.9 4.8 20 5-24 4-23 (36)
363 PF10255 Paf67: RNA polymerase 91.2 1.2 2.6E-05 41.1 8.4 96 6-102 126-231 (404)
364 PF07721 TPR_4: Tetratricopept 91.1 0.29 6.3E-06 26.3 2.7 22 72-93 3-24 (26)
365 KOG0686 COP9 signalosome, subu 91.1 1.4 3.1E-05 40.3 8.5 95 4-98 152-257 (466)
366 PRK13184 pknD serine/threonine 90.9 2.9 6.2E-05 42.9 11.4 90 16-106 533-627 (932)
367 KOG2561 Adaptor protein NUB1, 90.9 0.94 2E-05 41.9 7.2 98 1-98 162-295 (568)
368 KOG0529 Protein geranylgeranyl 90.7 4.4 9.5E-05 37.3 11.3 104 14-117 87-196 (421)
369 PF04781 DUF627: Protein of un 90.5 2.6 5.7E-05 31.5 8.1 66 42-107 2-81 (111)
370 KOG3617 WD40 and TPR repeat-co 90.4 4.4 9.6E-05 40.7 11.6 95 4-98 860-995 (1416)
371 PF10373 EST1_DNA_bind: Est1 D 90.4 1.4 3E-05 38.2 7.8 45 55-99 1-45 (278)
372 KOG2300 Uncharacterized conser 90.3 7.7 0.00017 36.6 12.6 93 5-100 370-475 (629)
373 PF07721 TPR_4: Tetratricopept 90.2 0.4 8.6E-06 25.7 2.7 23 38-60 3-25 (26)
374 PF10373 EST1_DNA_bind: Est1 D 90.2 6.1 0.00013 34.0 11.7 62 21-82 1-62 (278)
375 PRK15180 Vi polysaccharide bio 90.0 0.97 2.1E-05 42.4 6.6 97 8-104 329-425 (831)
376 KOG0546 HSP90 co-chaperone CPR 89.9 0.31 6.7E-06 43.7 3.2 78 8-85 281-358 (372)
377 COG3118 Thioredoxin domain-con 89.8 2.7 5.8E-05 37.1 8.8 62 35-96 133-194 (304)
378 PF10579 Rapsyn_N: Rapsyn N-te 89.7 3.5 7.6E-05 28.9 7.6 58 39-96 9-69 (80)
379 cd02683 MIT_1 MIT: domain cont 89.5 2.9 6.4E-05 29.1 7.3 30 2-31 6-35 (77)
380 COG4455 ImpE Protein of avirul 89.4 2.3 5.1E-05 35.9 7.8 61 9-69 8-68 (273)
381 PF07079 DUF1347: Protein of u 89.2 8.2 0.00018 36.2 11.8 95 5-99 9-108 (549)
382 PF14863 Alkyl_sulf_dimr: Alky 89.2 2 4.3E-05 33.7 7.0 49 72-120 72-120 (141)
383 COG3947 Response regulator con 89.2 1.7 3.7E-05 38.3 7.0 58 39-96 282-339 (361)
384 PF09670 Cas_Cas02710: CRISPR- 89.1 8 0.00017 35.6 12.0 62 4-65 133-198 (379)
385 KOG2422 Uncharacterized conser 89.1 12 0.00026 36.1 13.0 92 15-106 251-379 (665)
386 PF10255 Paf67: RNA polymerase 88.8 1.1 2.3E-05 41.5 6.0 59 39-98 125-192 (404)
387 PF10602 RPN7: 26S proteasome 88.8 5.3 0.00012 32.5 9.6 66 36-101 36-104 (177)
388 KOG1258 mRNA processing protei 88.7 12 0.00025 36.1 12.8 102 5-106 300-402 (577)
389 PF11207 DUF2989: Protein of u 88.6 4.9 0.00011 33.5 9.1 72 19-91 123-199 (203)
390 cd02681 MIT_calpain7_1 MIT: do 88.3 0.75 1.6E-05 32.0 3.7 30 2-31 6-35 (76)
391 COG3914 Spy Predicted O-linked 88.0 8.2 0.00018 37.2 11.3 101 13-113 41-145 (620)
392 COG0790 FOG: TPR repeat, SEL1 87.4 7.5 0.00016 33.9 10.5 82 17-103 170-270 (292)
393 KOG0529 Protein geranylgeranyl 87.3 21 0.00044 33.1 13.0 109 11-119 37-160 (421)
394 KOG1310 WD40 repeat protein [G 87.3 2 4.3E-05 40.8 6.7 84 37-120 375-461 (758)
395 PF11817 Foie-gras_1: Foie gra 87.1 2.8 6.1E-05 36.0 7.4 62 36-97 178-245 (247)
396 PF04212 MIT: MIT (microtubule 86.7 1.5 3.2E-05 29.7 4.3 30 2-31 5-34 (69)
397 KOG2300 Uncharacterized conser 86.0 21 0.00046 33.8 12.6 115 3-120 8-136 (629)
398 KOG1839 Uncharacterized protei 86.0 1.6 3.4E-05 45.5 5.8 98 2-99 932-1044(1236)
399 COG4455 ImpE Protein of avirul 86.0 10 0.00022 32.3 9.5 72 44-115 9-83 (273)
400 PF10345 Cohesin_load: Cohesin 85.9 29 0.00062 34.1 14.5 110 3-113 60-184 (608)
401 PF11817 Foie-gras_1: Foie gra 85.7 7 0.00015 33.6 9.1 51 70-120 178-234 (247)
402 PF04053 Coatomer_WDAD: Coatom 85.6 12 0.00025 35.3 11.1 89 9-99 268-376 (443)
403 KOG2581 26S proteasome regulat 85.6 21 0.00046 33.0 12.1 85 40-124 213-303 (493)
404 COG4649 Uncharacterized protei 85.5 19 0.00041 29.6 12.6 94 5-98 97-195 (221)
405 PF15015 NYD-SP12_N: Spermatog 85.2 5.5 0.00012 36.9 8.3 80 41-120 181-278 (569)
406 KOG1914 mRNA cleavage and poly 85.2 5.9 0.00013 37.8 8.7 47 17-63 34-80 (656)
407 KOG2041 WD40 repeat protein [G 85.0 4.9 0.00011 39.6 8.2 48 2-57 796-843 (1189)
408 KOG1839 Uncharacterized protei 84.9 3.3 7.2E-05 43.2 7.5 99 2-100 973-1087(1236)
409 COG4941 Predicted RNA polymera 84.7 7.4 0.00016 35.0 8.7 94 15-109 309-404 (415)
410 PF07219 HemY_N: HemY protein 84.7 4.6 0.0001 30.0 6.6 42 42-83 65-106 (108)
411 cd02680 MIT_calpain7_2 MIT: do 84.7 1.6 3.5E-05 30.3 3.7 29 3-31 7-35 (75)
412 smart00386 HAT HAT (Half-A-TPR 84.6 2.6 5.6E-05 22.9 4.1 29 16-44 1-29 (33)
413 cd02678 MIT_VPS4 MIT: domain c 84.5 5.7 0.00012 27.3 6.5 30 2-31 6-35 (75)
414 PF09205 DUF1955: Domain of un 84.2 12 0.00027 29.2 8.6 31 67-97 117-147 (161)
415 KOG3617 WD40 and TPR repeat-co 83.7 6.5 0.00014 39.6 8.6 78 9-96 807-884 (1416)
416 smart00745 MIT Microtubule Int 83.7 3.6 7.9E-05 28.3 5.3 29 3-31 9-37 (77)
417 TIGR03504 FimV_Cterm FimV C-te 83.7 3.7 8.1E-05 25.2 4.7 24 74-97 3-26 (44)
418 cd02684 MIT_2 MIT: domain cont 83.5 3.6 7.7E-05 28.5 5.1 30 2-31 6-35 (75)
419 KOG3783 Uncharacterized conser 83.3 16 0.00034 34.9 10.7 82 38-119 451-540 (546)
420 COG2909 MalT ATP-dependent tra 82.9 33 0.00071 34.9 13.1 95 6-100 419-527 (894)
421 PF11846 DUF3366: Domain of un 82.4 7.3 0.00016 31.9 7.6 50 52-102 127-176 (193)
422 PF11207 DUF2989: Protein of u 82.4 6.4 0.00014 32.8 7.0 47 11-57 149-199 (203)
423 cd02656 MIT MIT: domain contai 82.4 4.2 9.1E-05 27.9 5.2 29 3-31 7-35 (75)
424 cd02677 MIT_SNX15 MIT: domain 82.2 8.1 0.00018 26.7 6.5 30 2-31 6-35 (75)
425 COG4856 Uncharacterized protei 82.1 4.3 9.3E-05 36.9 6.2 74 179-253 64-137 (403)
426 TIGR03504 FimV_Cterm FimV C-te 81.3 3.5 7.7E-05 25.3 3.9 26 40-65 3-28 (44)
427 PF06957 COPI_C: Coatomer (COP 80.8 10 0.00022 35.3 8.5 101 5-105 207-335 (422)
428 cd02682 MIT_AAA_Arch MIT: doma 80.8 9 0.0002 26.5 6.2 22 92-113 35-56 (75)
429 COG3947 Response regulator con 80.7 6.3 0.00014 34.8 6.6 57 5-61 282-338 (361)
430 KOG4563 Cell cycle-regulated h 79.8 4.2 9E-05 36.8 5.4 53 3-55 42-102 (400)
431 KOG3783 Uncharacterized conser 79.7 14 0.00031 35.2 9.0 93 19-111 250-344 (546)
432 PF04053 Coatomer_WDAD: Coatom 79.5 14 0.00031 34.8 9.1 79 8-91 324-410 (443)
433 KOG0985 Vesicle coat protein c 78.9 9.6 0.00021 39.3 8.0 102 5-114 1197-1323(1666)
434 PF10345 Cohesin_load: Cohesin 78.9 26 0.00057 34.4 11.2 90 5-94 304-428 (608)
435 TIGR02710 CRISPR-associated pr 76.9 48 0.001 30.5 11.5 56 5-60 133-195 (380)
436 KOG0889 Histone acetyltransfer 76.3 26 0.00056 40.8 11.0 114 5-119 2777-2902(3550)
437 KOG0292 Vesicle coat complex C 75.5 58 0.0013 33.3 12.1 104 4-107 993-1121(1202)
438 PF15469 Sec5: Exocyst complex 74.3 28 0.0006 28.3 8.6 27 85-111 154-180 (182)
439 smart00386 HAT HAT (Half-A-TPR 74.2 8.6 0.00019 20.7 4.0 25 52-76 3-27 (33)
440 PF13226 DUF4034: Domain of un 74.2 57 0.0012 28.7 10.8 113 8-120 6-149 (277)
441 KOG4459 Membrane-associated pr 73.8 12 0.00025 35.0 6.7 114 4-120 33-183 (471)
442 COG2909 MalT ATP-dependent tra 73.6 47 0.001 33.8 11.1 90 6-95 462-564 (894)
443 KOG1914 mRNA cleavage and poly 73.2 51 0.0011 31.8 10.7 92 10-101 409-503 (656)
444 KOG3807 Predicted membrane pro 73.0 74 0.0016 28.9 12.0 92 8-101 190-306 (556)
445 PF12739 TRAPPC-Trs85: ER-Golg 72.4 40 0.00086 31.4 10.1 96 4-99 210-329 (414)
446 PRK15490 Vi polysaccharide bio 71.9 73 0.0016 31.1 11.8 88 5-94 8-98 (578)
447 COG5107 RNA14 Pre-mRNA 3'-end 71.6 74 0.0016 30.2 11.2 101 10-110 440-542 (660)
448 PF11846 DUF3366: Domain of un 70.6 18 0.00038 29.6 6.7 49 18-67 127-175 (193)
449 PF07163 Pex26: Pex26 protein; 68.3 82 0.0018 27.8 10.2 111 6-117 39-164 (309)
450 KOG0890 Protein kinase of the 67.8 88 0.0019 35.5 12.3 102 2-105 1670-1790(2382)
451 cd02680 MIT_calpain7_2 MIT: do 67.0 13 0.00027 25.8 4.2 18 48-65 18-35 (75)
452 COG4649 Uncharacterized protei 67.0 55 0.0012 26.9 8.3 77 6-83 136-213 (221)
453 KOG1463 26S proteasome regulat 65.8 19 0.00041 32.6 6.0 93 7-99 133-238 (411)
454 PF10938 YfdX: YfdX protein; 65.8 62 0.0013 25.7 8.6 97 2-98 2-145 (155)
455 KOG2422 Uncharacterized conser 65.0 64 0.0014 31.4 9.6 98 5-102 345-451 (665)
456 KOG4563 Cell cycle-regulated h 63.9 16 0.00034 33.3 5.2 58 38-95 43-108 (400)
457 PF12854 PPR_1: PPR repeat 63.5 19 0.00041 20.4 3.9 26 36-61 7-32 (34)
458 TIGR02508 type_III_yscG type I 63.2 44 0.00096 24.7 6.5 65 49-119 18-83 (115)
459 KOG1258 mRNA processing protei 63.0 1.5E+02 0.0033 28.8 13.6 106 9-114 373-485 (577)
460 COG2015 Alkyl sulfatase and re 62.9 19 0.00041 34.1 5.7 53 36-88 452-504 (655)
461 PF03745 DUF309: Domain of unk 62.4 42 0.00092 22.1 7.4 52 6-57 3-60 (62)
462 KOG0687 26S proteasome regulat 61.8 1.3E+02 0.0027 27.4 10.6 97 3-99 105-210 (393)
463 COG4941 Predicted RNA polymera 61.3 53 0.0011 29.8 7.9 71 9-79 336-408 (415)
464 KOG0985 Vesicle coat protein c 61.2 1.3E+02 0.0029 31.6 11.5 55 4-63 1106-1160(1666)
465 PF10952 DUF2753: Protein of u 61.0 50 0.0011 25.4 6.7 59 4-62 3-76 (140)
466 cd02679 MIT_spastin MIT: domai 60.6 15 0.00033 25.7 3.7 16 17-32 4-19 (79)
467 cd02683 MIT_1 MIT: domain cont 60.2 51 0.0011 22.8 6.3 22 41-62 11-32 (77)
468 PF08238 Sel1: Sel1 repeat; I 59.8 25 0.00055 19.9 4.2 29 71-99 2-37 (39)
469 KOG0739 AAA+-type ATPase [Post 59.0 43 0.00093 30.0 6.9 28 4-31 12-39 (439)
470 KOG2041 WD40 repeat protein [G 58.0 53 0.0011 32.8 7.9 80 9-96 741-822 (1189)
471 PF09477 Type_III_YscG: Bacter 57.8 78 0.0017 23.7 9.1 77 37-118 7-83 (116)
472 PF01535 PPR: PPR repeat; Int 57.5 21 0.00045 18.9 3.4 21 42-62 6-26 (31)
473 PF13041 PPR_2: PPR repeat fam 57.4 32 0.00069 21.0 4.5 30 37-66 4-33 (50)
474 PF02064 MAS20: MAS20 protein 57.3 21 0.00045 27.2 4.2 28 7-34 68-95 (121)
475 PF10938 YfdX: YfdX protein; 56.9 45 0.00098 26.5 6.3 62 3-64 76-145 (155)
476 COG5107 RNA14 Pre-mRNA 3'-end 56.7 59 0.0013 30.8 7.7 77 24-100 30-106 (660)
477 PF07219 HemY_N: HemY protein 56.5 64 0.0014 23.7 6.8 28 72-99 61-88 (108)
478 PF04212 MIT: MIT (microtubule 55.6 31 0.00066 23.0 4.5 23 41-63 10-32 (69)
479 PF04190 DUF410: Protein of un 55.5 1.4E+02 0.003 25.9 11.2 91 5-95 13-115 (260)
480 COG5159 RPN6 26S proteasome re 54.9 49 0.0011 29.4 6.5 94 7-100 130-236 (421)
481 PF02064 MAS20: MAS20 protein 54.6 34 0.00074 26.0 5.0 38 73-110 66-103 (121)
482 COG5159 RPN6 26S proteasome re 54.6 1.4E+02 0.0031 26.6 9.3 115 6-120 7-181 (421)
483 PRK11619 lytic murein transgly 54.4 1.1E+02 0.0024 30.4 9.8 61 38-98 314-374 (644)
484 smart00745 MIT Microtubule Int 54.0 55 0.0012 22.2 5.7 16 48-63 20-35 (77)
485 PF09205 DUF1955: Domain of un 53.3 1.1E+02 0.0024 24.0 8.1 63 4-66 87-150 (161)
486 smart00299 CLH Clathrin heavy 53.1 98 0.0021 23.4 8.9 80 13-94 18-106 (140)
487 KOG0276 Vesicle coat complex C 53.0 34 0.00075 33.4 5.7 51 44-99 645-695 (794)
488 PF09797 NatB_MDM20: N-acetylt 52.0 1.3E+02 0.0029 27.2 9.5 46 50-95 197-242 (365)
489 TIGR00756 PPR pentatricopeptid 51.9 37 0.0008 18.2 4.1 22 42-63 6-27 (35)
490 KOG2758 Translation initiation 51.4 54 0.0012 29.6 6.3 63 2-64 129-195 (432)
491 cd02656 MIT MIT: domain contai 51.2 66 0.0014 21.8 5.7 14 50-63 20-33 (75)
492 COG3014 Uncharacterized protei 50.3 58 0.0013 29.6 6.4 81 21-101 40-156 (449)
493 cd02681 MIT_calpain7_1 MIT: do 50.1 32 0.00069 23.8 3.9 22 75-96 11-32 (76)
494 PF13226 DUF4034: Domain of un 49.9 1.1E+02 0.0023 27.0 8.0 68 20-87 61-150 (277)
495 PF08969 USP8_dimer: USP8 dime 49.6 31 0.00066 25.8 4.1 30 2-31 38-67 (115)
496 PRK15490 Vi polysaccharide bio 49.0 1.2E+02 0.0026 29.7 8.8 57 2-60 42-98 (578)
497 KOG1464 COP9 signalosome, subu 49.0 59 0.0013 28.7 6.1 50 15-64 40-93 (440)
498 PF04348 LppC: LppC putative l 48.9 5.7 0.00012 38.4 0.0 97 5-101 27-129 (536)
499 KOG0276 Vesicle coat complex C 48.8 99 0.0022 30.4 8.0 82 10-96 645-747 (794)
500 smart00671 SEL1 Sel1-like repe 48.4 38 0.00083 18.6 3.6 13 85-97 20-32 (36)
No 1
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=100.00 E-value=1.2e-45 Score=334.28 Aligned_cols=248 Identities=71% Similarity=1.111 Sum_probs=213.4
Q ss_pred ChhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 023550 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (281)
Q Consensus 1 ma~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 80 (281)
|+..+..+|+.++..|+|++|+.+|++++.++|+++.+|+++|.+|+++|++++|+.++++++.++|.++.+|+++|.+|
T Consensus 1 ~~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~ 80 (356)
T PLN03088 1 MAKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC 80 (356)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhhhCcCCCCCCCCCCCccccCCCCCCCCCCCCCccchhhhcc
Q 023550 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDV 160 (281)
Q Consensus 81 ~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (281)
+.+|+|++|+.+|+++++++|++..+..|+.+|..++.......+...+..+ +. +......+ .
T Consensus 81 ~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~~~~~~~~~~~~~-~~---~~~~~~~~-------------~ 143 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEEEKDLVQPVPSDL-PS---SVTAPPVE-------------E 143 (356)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhccccccccccc-cc---cccccccc-------------c
Confidence 9999999999999999999999999999999999999765333222111100 00 00000000 0
Q ss_pred ccccccCCCCCCCCCcccccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCcceEEEe
Q 023550 161 SNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVL 240 (281)
Q Consensus 161 ~~~~p~~~p~~~k~r~~w~Qt~~~v~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~ 240 (281)
....+..++..+++||+||||+++|+|+||+||+.++++.|+|++++|+|.|..++|..|.|.++||++|+|++|+++|.
T Consensus 144 ~~~~~~~~~~~~~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~ 223 (356)
T PLN03088 144 ADATPVVPPSKPKYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEVPGEDAYHLQPRLFGKIIPDKCKYEVL 223 (356)
T ss_pred cccCCCCCCCCCccccceeecCCEEEEEEEecCCChHHcEEEeecCEEEEEEecCCCcceeecccccccccccccEEEEe
Confidence 00112233455689999999999999999999999999999999999999999888889999999999999999999999
Q ss_pred CcEEEEEEeecCCCCCCccccCcCc
Q 023550 241 STKVEIRLAKAEPIQWSSLEFSKGA 265 (281)
Q Consensus 241 ~~kiei~L~K~~~~~W~~L~~~~~~ 265 (281)
++||||+|+|+++.+|++|+++...
T Consensus 224 ~~Kiei~l~K~~~~~W~~L~~~~~~ 248 (356)
T PLN03088 224 STKIEIRLAKAEPITWASLEYGKGP 248 (356)
T ss_pred cceEEEEEecCCCCCccccccCCcc
Confidence 9999999999999999999977643
No 2
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=99.93 E-value=1.4e-25 Score=162.47 Aligned_cols=87 Identities=36% Similarity=0.566 Sum_probs=83.1
Q ss_pred CCcccccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCcceEEEeCcEEEEEEeecCC
Q 023550 174 YRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP 253 (281)
Q Consensus 174 ~r~~w~Qt~~~v~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~ 253 (281)
+||+|||++++|+|+|++||+.++++.|+|++++|+|.+..++|+.|.++++||++|+|++|++++.++||||+|+|+++
T Consensus 1 ~R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~l~L~~~I~~~~s~~~v~~~kvei~L~K~~~ 80 (87)
T cd06488 1 CRHDWHQTGSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEGNKEFQLDIELWGVIDVEKSSVNMLPTKVEIKLRKAEP 80 (87)
T ss_pred CCccEeeCCCEEEEEEEECcCCccceEEEecCCEEEEEEECCCCceEEEEeeccceEChhHcEEEecCcEEEEEEEeCCC
Confidence 59999999999999999999999999999999999998877778889999999999999999999999999999999999
Q ss_pred CCCCccc
Q 023550 254 IQWSSLE 260 (281)
Q Consensus 254 ~~W~~L~ 260 (281)
..|++|+
T Consensus 81 ~~W~~Le 87 (87)
T cd06488 81 GSWAKLE 87 (87)
T ss_pred CcCccCC
Confidence 9999986
No 3
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=99.92 E-value=1.6e-25 Score=175.79 Aligned_cols=98 Identities=47% Similarity=0.794 Sum_probs=91.0
Q ss_pred CCCCcccccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCcceEEEeCcEEEEEEeec
Q 023550 172 PKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKA 251 (281)
Q Consensus 172 ~k~r~~w~Qt~~~v~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~ 251 (281)
+++||+||||.+.|+|+||.|||+.++|.|.|.++.|++.++.++|+.|.|.++|||+|+|+.|+|+++++||||+|.|.
T Consensus 2 ~k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~~l~~~~~~~~g~~~~l~~~L~~~I~pe~~s~k~~stKVEI~L~K~ 81 (196)
T KOG1309|consen 2 MKIRHDWYQTETSVVITIFAKNVPKEDVNVEISENTLSIVIQLPSGSEYNLQLKLYHEIIPEKSSFKVFSTKVEITLAKA 81 (196)
T ss_pred CcccceeecCCceEEEEEEecCCCccceeEEeecceEEEEEecCCchhhhhhHHhcccccccceeeEeeeeeEEEEeccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCccccCcCcCCCC
Q 023550 252 EPIQWSSLEFSKGAVVPQ 269 (281)
Q Consensus 252 ~~~~W~~L~~~~~~~~~~ 269 (281)
+.++|..|++-.+..++-
T Consensus 82 ~~irW~~Le~g~~~~~~~ 99 (196)
T KOG1309|consen 82 EIIRWESLEKGKGSAVAP 99 (196)
T ss_pred cchhhhhhhcccCccccc
Confidence 899999999644433333
No 4
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=99.90 E-value=1.5e-23 Score=151.10 Aligned_cols=84 Identities=37% Similarity=0.757 Sum_probs=80.7
Q ss_pred ccccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCcceEEEeCcEEEEEEeecCCCCC
Q 023550 177 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQW 256 (281)
Q Consensus 177 ~w~Qt~~~v~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~W 256 (281)
||||++++|+|+|+++|++++++.|+|++++|+|.+..++|..|.++++||++|+|++|+|++.++||||+|+|+++..|
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~W 80 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKRELSATVKLPSGNDYSLKLHLLHPIVPEQSSYKILSTKIEIKLKKTEAIRW 80 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECCCCCcEEEeeecCceecchhcEEEEeCcEEEEEEEcCCCCCC
Confidence 79999999999999999999999999999999999988777789999999999999999999999999999999998999
Q ss_pred Cccc
Q 023550 257 SSLE 260 (281)
Q Consensus 257 ~~L~ 260 (281)
++|+
T Consensus 81 ~~Le 84 (84)
T cd06489 81 SKLE 84 (84)
T ss_pred ccCC
Confidence 9996
No 5
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.86 E-value=4.8e-21 Score=163.59 Aligned_cols=119 Identities=31% Similarity=0.511 Sum_probs=115.7
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (281)
|+.++.+|+.+++.++|++|+..|++||.++|+|+.+|.+||.+|.++|.|+.|+++++.||.++|...++|.|+|.+|+
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 82 ~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
.+|+|++|++.|+++++++|++..++..+..++..+++.
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEP 199 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999998887775
No 6
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=99.86 E-value=3.6e-21 Score=138.67 Aligned_cols=84 Identities=49% Similarity=0.782 Sum_probs=79.4
Q ss_pred ccccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCcceEEEeCcEEEEEEeecCCCCC
Q 023550 177 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQW 256 (281)
Q Consensus 177 ~w~Qt~~~v~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~W 256 (281)
+|||++++|+|+|+++|+.++++.|.|++++|+|.+...++..|.++++||++|+|++|+|++.+++|+|+|+|+++..|
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K~~~~~W 80 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILPGGSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKAEPGSW 80 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECCCCCeEEEecccccccCchhcEEEEeCeEEEEEEEcCCCCCC
Confidence 79999999999999999999999999999999999876655689999999999999999999999999999999999999
Q ss_pred Cccc
Q 023550 257 SSLE 260 (281)
Q Consensus 257 ~~L~ 260 (281)
++|+
T Consensus 81 ~~L~ 84 (84)
T cd06466 81 PSLE 84 (84)
T ss_pred ccCC
Confidence 9986
No 7
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=99.85 E-value=3.7e-21 Score=139.02 Aligned_cols=83 Identities=29% Similarity=0.444 Sum_probs=74.0
Q ss_pred cccccCCCeEEEEEEecC--CCCcceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCcceEEEeC--cEEEEEEeec
Q 023550 176 HEFYQKPEEVVVTVFAKG--IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLS--TKVEIRLAKA 251 (281)
Q Consensus 176 ~~w~Qt~~~v~i~v~~k~--~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~--~kiei~L~K~ 251 (281)
||||||+++|+|+||.|+ ....++.+++..++|+++++.+ ++.|.++++||++|+|+. ++++.. +||||+|+|+
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~-~~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI~L~K~ 78 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILG-DKSYLLHLDLSNEVQWPC-EVRISTETGKIELVLKKK 78 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECC-CceEEEeeeccccCCCCc-EEEEcccCceEEEEEEcC
Confidence 799999999999999884 6667778888999999999877 778999999999998775 888885 5999999999
Q ss_pred CCCCCCccc
Q 023550 252 EPIQWSSLE 260 (281)
Q Consensus 252 ~~~~W~~L~ 260 (281)
++..|++|+
T Consensus 79 e~~~W~~Lg 87 (87)
T cd06490 79 EPEKWTSLG 87 (87)
T ss_pred CCCccccCc
Confidence 999999985
No 8
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=99.85 E-value=4.8e-21 Score=140.47 Aligned_cols=86 Identities=27% Similarity=0.466 Sum_probs=80.2
Q ss_pred CcccccCCCeEEEEEEecCCCC---cceEEEEeeeEEEEEEEcCCCCeeeeccc-cccccccCcceEEEeCcEEEEEEee
Q 023550 175 RHEFYQKPEEVVVTVFAKGIPA---KNVTVDFGEQILSVSIDVPGEEAYHFQPR-LFGKIIPAKCRYEVLSTKVEIRLAK 250 (281)
Q Consensus 175 r~~w~Qt~~~v~i~v~~k~~~~---~~~~v~~~~~~l~~~~~~~~~~~~~~~~~-L~~~I~p~~s~~~v~~~kiei~L~K 250 (281)
+|+|+|+++.|+|+|+++++.. +++.|+|++++|+|.+...+|.+|.+.+. ||++|+|++|+|++.+++|+|+|.|
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i~L~K 82 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNGKNYRFTINRLLKKIDPEKSSFKVKTDRIVITLAK 82 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCCCcEEEEEehHhhCccCccccEEEEeCCEEEEEEEe
Confidence 6999999999999999999876 99999999999999997667788988885 9999999999999999999999999
Q ss_pred cCCCCCCccc
Q 023550 251 AEPIQWSSLE 260 (281)
Q Consensus 251 ~~~~~W~~L~ 260 (281)
+++..|++|.
T Consensus 83 ~~~~~W~~L~ 92 (92)
T cd06468 83 KKEKKWESLT 92 (92)
T ss_pred CCCCccCccC
Confidence 9989999984
No 9
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=99.84 E-value=1.3e-20 Score=142.26 Aligned_cols=92 Identities=23% Similarity=0.344 Sum_probs=83.9
Q ss_pred CcccccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcC-CCCeeeeccccccccccCcceEEEeCcEEEEEEeecC-
Q 023550 175 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP-GEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAE- 252 (281)
Q Consensus 175 r~~w~Qt~~~v~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~-~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~- 252 (281)
-|+||||.+.|+|+|+++|+ +++.|+|++++|+|.+... ++..|.++++||++|+|++|+|++.+++|+|+|+|++
T Consensus 2 ~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~~~~~~~y~~~~~L~~~I~pe~s~~~v~~~kveI~L~K~~~ 79 (108)
T cd06465 2 PVLWAQRSDVVYLTIELPDA--KDPKIKLEPTSLSFKAKGGGGGKKYEFDLEFYKEIDPEESKYKVTGRQIEFVLRKKEA 79 (108)
T ss_pred ceeeeECCCEEEEEEEeCCC--CCcEEEEECCEEEEEEEcCCCCeeEEEEeEhhhhccccccEEEecCCeEEEEEEECCC
Confidence 58999999999999999997 8899999999999998654 5777999999999999999999999999999999999
Q ss_pred CCCCCccccCcCcCCC
Q 023550 253 PIQWSSLEFSKGAVVP 268 (281)
Q Consensus 253 ~~~W~~L~~~~~~~~~ 268 (281)
+..|++|++...+...
T Consensus 80 ~~~W~~L~~~~~k~~~ 95 (108)
T cd06465 80 GEYWPRLTKEKGKLPW 95 (108)
T ss_pred CCCCcccccCCCCCCc
Confidence 7999999987766543
No 10
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=99.83 E-value=2.6e-20 Score=155.78 Aligned_cols=248 Identities=15% Similarity=0.194 Sum_probs=182.2
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHHcCC------CcHHH
Q 023550 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL----------QNFTEAVADANRAIELEP------SMSKA 72 (281)
Q Consensus 9 g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l----------~~~~~A~~~~~~al~l~p------~~~~a 72 (281)
+.+++..++.-.|+..|...+.-.|.|..++...+.|+.++ -..+.|++.++.||-+.. ..+-+
T Consensus 2 ~~~L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~Fs~~~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~ 81 (368)
T COG5091 2 YKALYDEKEPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDWHSDATMENAKELLDKALMTAEGRGDRSKIGLV 81 (368)
T ss_pred ccchhcccchHHHhhhhhhhhccCCcceeEEeehhhhHHHHHhhhhhhhcccChhhHHHHHHHHHHhhhccCCcceeeee
Confidence 34567778888999999999999999977766666666654 357789999999986643 34678
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhhhCcCCCCCCCCCCCc--cccCCCCCCCCCCCC
Q 023550 73 YWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPTN--VVSTNNVQPATNISS 150 (281)
Q Consensus 73 ~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~--~~~~~~~~~~~~~~~ 150 (281)
.++++.+||.+++|+.|..||..|..+.- +..+..|-.++...|....+.....+.+...+. ++.........
T Consensus 82 ~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~-~d~L~~We~rLet~L~~~~kkQ~~~Tnk~~I~~vEs~e~~GD~~~~---- 156 (368)
T COG5091 82 NFRYFVHFFNIKDYELAQSYFKKAKNLYV-DDTLPLWEDRLETKLNKKNKKQKDSTNKHTIKPVESIENRGDNNSS---- 156 (368)
T ss_pred hhhhHHHhhhHHHHHHHHHHHHHHHHHhh-cccchHHHHHHHHHHhHhhHhhccccCCCCCCchhhhhccCccccc----
Confidence 99999999999999999999999999954 456888888888888776333222222111111 11111111110
Q ss_pred Cccchhhhcccccc---ccCCCCCCCCCcccccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcCCCCe-eeecccc
Q 023550 151 TEDVETVMDVSNEA---AMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEA-YHFQPRL 226 (281)
Q Consensus 151 ~~~~~~~~~~~~~~---p~~~p~~~k~r~~w~Qt~~~v~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~-~~~~~~L 226 (281)
+.+.+|.. .+.-.+.-+|+|+|.||..++.|.|+.+-+..++|.+-++.+.|+|+++.+.++- +.+...|
T Consensus 157 ------~S~~sP~~~~~~~qE~~~~~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~NTL~I~~q~~~~~~~~~~~~~L 230 (368)
T COG5091 157 ------HSPISPLKIETAPQESPKMEIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEGNTLSISYQPRRLRLWNDITISL 230 (368)
T ss_pred ------cCCCCccccccCcccCccceeeeeccccceeEEEEEecCCCCccccceeecCCcceeeeeccccchHHHhhhhh
Confidence 11122222 1122334567788888888888888888888999999999999999998876544 4456689
Q ss_pred ccccccCcceEEEeCcEEEEEEeecCCCCCCccccCcCcCC
Q 023550 227 FGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVV 267 (281)
Q Consensus 227 ~~~I~p~~s~~~v~~~kiei~L~K~~~~~W~~L~~~~~~~~ 267 (281)
|++|+|+.+++++.+.++|++|+|.+.++|+.|++......
T Consensus 231 y~ev~P~~~s~k~fsK~~e~~l~KV~~v~W~~l~~~pa~~S 271 (368)
T COG5091 231 YKEVYPDIRSIKSFSKRVEVHLRKVEMVRWGGLNGRPADES 271 (368)
T ss_pred hhhcCcchhhhhhcchhheehhhhhhhhhhcccccCccccc
Confidence 99999999999999999999999999999999998765533
No 11
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=99.82 E-value=7.2e-20 Score=136.65 Aligned_cols=90 Identities=18% Similarity=0.290 Sum_probs=82.2
Q ss_pred CcccccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCcceEEEeCcEEEEEEeecCC-
Q 023550 175 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP- 253 (281)
Q Consensus 175 r~~w~Qt~~~v~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~- 253 (281)
.+.|+|+.+.|+|||++++ .++++|+|++++|+|+....+|..|.++++||++|+|++|++++++++|||+|+|++.
T Consensus 3 ~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~~~l~f~~~~~~g~~y~~~l~l~~~I~pe~Sk~~v~~r~ve~~L~K~~~~ 80 (106)
T cd00237 3 KTLWYDRRDYVFIEFCVED--SKDVKVDFEKSKLTFSCLNGDNVKIYNEIELYDRVDPNDSKHKRTDRSILCCLRKGKEG 80 (106)
T ss_pred cceeeECCCEEEEEEEeCC--CCCcEEEEecCEEEEEEECCCCcEEEEEEEeecccCcccCeEEeCCceEEEEEEeCCCC
Confidence 5899999999999999998 5899999999999999865577789999999999999999999999999999999975
Q ss_pred CCCCccccCcCcC
Q 023550 254 IQWSSLEFSKGAV 266 (281)
Q Consensus 254 ~~W~~L~~~~~~~ 266 (281)
..|++|++++.++
T Consensus 81 ~~WprL~k~~~k~ 93 (106)
T cd00237 81 VAWPRLTKEKAKP 93 (106)
T ss_pred CCCchhhcCCCCC
Confidence 5899999987654
No 12
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=99.78 E-value=9.8e-19 Score=126.11 Aligned_cols=81 Identities=16% Similarity=0.352 Sum_probs=72.5
Q ss_pred cccccCCCeEEEEEEe-cCCCCcceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCcceEEEeCc-EEEEEEeecCC
Q 023550 176 HEFYQKPEEVVVTVFA-KGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST-KVEIRLAKAEP 253 (281)
Q Consensus 176 ~~w~Qt~~~v~i~v~~-k~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~-kiei~L~K~~~ 253 (281)
|+|+||.+.|+|+|++ +|+++++++|+|++++|.|.+. +....++++||+.|+|++|+|++.++ +|+|+|.|+++
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~---~~~~~~~g~L~~~I~~d~Stw~i~~~~~l~i~L~K~~~ 77 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALK---DQAPLLEGKLYSSIDHESSTWIIKENKSLEVSLIKKDE 77 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeC---CCCeEEeCcccCcccccCcEEEEeCCCEEEEEEEECCC
Confidence 8999999999999998 6999999999999999999874 22345789999999999999999766 69999999986
Q ss_pred -CCCCcc
Q 023550 254 -IQWSSL 259 (281)
Q Consensus 254 -~~W~~L 259 (281)
..|++|
T Consensus 78 ~~~W~~L 84 (85)
T cd06493 78 GPTWPEL 84 (85)
T ss_pred Ccccccc
Confidence 699987
No 13
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=99.78 E-value=1.5e-18 Score=123.23 Aligned_cols=77 Identities=38% Similarity=0.581 Sum_probs=70.3
Q ss_pred CCcccccCCCeEEEEEEecCCC--CcceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCcceEEEeCcEEEEEEee
Q 023550 174 YRHEFYQKPEEVVVTVFAKGIP--AKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAK 250 (281)
Q Consensus 174 ~r~~w~Qt~~~v~i~v~~k~~~--~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K 250 (281)
.||+|+||.+.|+|+|++++.. ++++.|+|++++|+|.+...++..|.++++||++|+|++|+|++.+++|+|+|+|
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~i~i~L~K 79 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDGKEYLLEGELFGEIDPDESTWKVKDNKIEITLKK 79 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTSCEEEEEEEBSS-BECCCEEEEEETTEEEEEEEB
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCCceEEEEEEEeeeEcchhcEEEEECCEEEEEEEC
Confidence 3899999999999999997765 8999999999999999987766899999999999999999999999999999998
No 14
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.77 E-value=2.5e-18 Score=122.04 Aligned_cols=78 Identities=26% Similarity=0.346 Sum_probs=73.5
Q ss_pred cccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCcceEEEeCcEEEEEEeecCCCCCC
Q 023550 178 FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWS 257 (281)
Q Consensus 178 w~Qt~~~v~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~W~ 257 (281)
|+|+++.|+|+|.++|+.++++.|+++++.|+|.. ..|.++++||++|+|++|++++.+++|+|+|.|+++..|+
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~-----~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~~~~~W~ 75 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNF-----PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKEPGIWE 75 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEecCEEEEcC-----CCEEEEEeCcccccccccEEEEeCCEEEEEEEeCCCCccc
Confidence 99999999999999999999999999999888765 3699999999999999999999999999999999989999
Q ss_pred ccc
Q 023550 258 SLE 260 (281)
Q Consensus 258 ~L~ 260 (281)
+|+
T Consensus 76 ~L~ 78 (78)
T cd06469 76 ALC 78 (78)
T ss_pred ccC
Confidence 986
No 15
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=99.76 E-value=4.6e-18 Score=122.68 Aligned_cols=81 Identities=25% Similarity=0.363 Sum_probs=74.6
Q ss_pred cccccCCCeEEEEEEe-cCCCCcceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCcceEEEeC-cEEEEEEeecCC
Q 023550 176 HEFYQKPEEVVVTVFA-KGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLS-TKVEIRLAKAEP 253 (281)
Q Consensus 176 ~~w~Qt~~~v~i~v~~-k~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~-~kiei~L~K~~~ 253 (281)
|.|+|+.+.|+|+|.+ +++.+++++|+|++++|+|.+. +..+.+++.||++|+|++|+|++.+ ++|+|+|+|+++
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~---~~~~~l~~~L~~~I~~~~s~w~~~~~~~v~i~L~K~~~ 77 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVK---GGEPLLDGELYAKVKVDESTWTLEDGKLLEITLEKRNE 77 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEEC---CCCceEcCcccCceeEcCCEEEEeCCCEEEEEEEECCC
Confidence 7899999999999987 5788999999999999999985 2457789999999999999999999 999999999998
Q ss_pred -CCCCcc
Q 023550 254 -IQWSSL 259 (281)
Q Consensus 254 -~~W~~L 259 (281)
..|++|
T Consensus 78 ~~~W~~L 84 (85)
T cd06467 78 GEWWPSL 84 (85)
T ss_pred Ccccccc
Confidence 799987
No 16
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.75 E-value=7.6e-18 Score=120.80 Aligned_cols=83 Identities=37% Similarity=0.636 Sum_probs=78.2
Q ss_pred cccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCcceEEEeCcEEEEEEeecCC-CCC
Q 023550 178 FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP-IQW 256 (281)
Q Consensus 178 w~Qt~~~v~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~-~~W 256 (281)
|+|++++|+|+|+++|+.++++.|+|++++|+|.+...++..|.++++|+++|+|++|+|++.+++|+|+|.|+++ ..|
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~~~~W 80 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKEPGEWW 80 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEecCEEEEEeeCCCCCceEEeeEccCccchhhcEEEEeCCEEEEEEEECCCCCCC
Confidence 9999999999999999999999999999999999876556789999999999999999999999999999999998 999
Q ss_pred Cccc
Q 023550 257 SSLE 260 (281)
Q Consensus 257 ~~L~ 260 (281)
++|+
T Consensus 81 ~~l~ 84 (84)
T cd06463 81 PRLE 84 (84)
T ss_pred cccC
Confidence 9984
No 17
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2.9e-17 Score=149.42 Aligned_cols=116 Identities=33% Similarity=0.537 Sum_probs=112.6
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (281)
+...+.+|+.+|..|+|..|+.+|+++|+.+|+++.+|.|||.||.+++++..|+.|++.+++++|++.++|+|.|.+++
T Consensus 358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~ 437 (539)
T KOG0548|consen 358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALR 437 (539)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 023550 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (281)
Q Consensus 82 ~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (281)
.+.+|++|+.+|+++++++|++..+..++.+|...+
T Consensus 438 ~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 438 AMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998876
No 18
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.73 E-value=1.8e-17 Score=120.65 Aligned_cols=82 Identities=26% Similarity=0.503 Sum_probs=74.1
Q ss_pred CcccccCCCeEEEEE-EecCCCCcceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCcceEEEeCcE-EEEEEeecC
Q 023550 175 RHEFYQKPEEVVVTV-FAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTK-VEIRLAKAE 252 (281)
Q Consensus 175 r~~w~Qt~~~v~i~v-~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~k-iei~L~K~~ 252 (281)
+|.|+||.+.|+|+| +.+|++++++.|+|++++|+|.+. |.. .++++||+.|+|++|+|++.++| |+|+|.|.+
T Consensus 7 ~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~---g~~-~l~G~L~~~I~~destWtled~k~l~I~L~K~~ 82 (93)
T cd06494 7 WGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVK---GQE-VLKGKLFDSVVADECTWTLEDRKLIRIVLTKSN 82 (93)
T ss_pred CcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEEC---CEE-EEcCcccCccCcccCEEEEECCcEEEEEEEeCC
Confidence 799999999999999 458899999999999999999984 555 68899999999999999999999 699999986
Q ss_pred C---CCCCccc
Q 023550 253 P---IQWSSLE 260 (281)
Q Consensus 253 ~---~~W~~L~ 260 (281)
. ..|++|.
T Consensus 83 ~~~~~~W~sl~ 93 (93)
T cd06494 83 RDAGNCWKSLL 93 (93)
T ss_pred CCCCccccccC
Confidence 5 4999873
No 19
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.71 E-value=5.4e-16 Score=123.08 Aligned_cols=117 Identities=13% Similarity=0.143 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
.++..|..++..|+|++|+..|.+++..+|.+..++.++|.++..+|++++|+..|++++.++|.++.+++++|.++..+
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 84 g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
|++++|+.+|++++.++|++...+..++.++..++..
T Consensus 106 g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~~ 142 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDTL 142 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998888887776543
No 20
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=99.66 E-value=3e-16 Score=129.75 Aligned_cols=91 Identities=33% Similarity=0.500 Sum_probs=84.5
Q ss_pred CCCCcccccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcC-CCCeeeeccccccccccCcceEEEeCcEEEEEEee
Q 023550 172 PKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP-GEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAK 250 (281)
Q Consensus 172 ~k~r~~w~Qt~~~v~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~-~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K 250 (281)
.+.||||.||+..|+|+||.|+.-++...|+.....|+|++..+ ++..|.++++|++.|++++|+..+..+||||+|+|
T Consensus 213 ~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~~l~V~ivf~~gna~fd~d~kLwgvvnve~s~v~m~~tkVEIsl~k 292 (320)
T KOG1667|consen 213 VKCRHDWHQTNGFVTINVYAKGALPETSNIEANGTTLHVSIVFGFGNASFDLDYKLWGVVNVEESSVVMGETKVEISLKK 292 (320)
T ss_pred ccchhhhhhcCCeEEEEEEeccCCcccceeeeCCeEEEEEEEecCCCceeeccceeeeeechhhceEEeecceEEEEEec
Confidence 47899999999999999999998889999999999999998774 55678889999999999999999999999999999
Q ss_pred cCCCCCCccccC
Q 023550 251 AEPIQWSSLEFS 262 (281)
Q Consensus 251 ~~~~~W~~L~~~ 262 (281)
+++..|.+|+..
T Consensus 293 ~ep~sWa~Le~p 304 (320)
T KOG1667|consen 293 AEPGSWARLEFP 304 (320)
T ss_pred cCCCCcccccCC
Confidence 999999999977
No 21
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.63 E-value=1.2e-14 Score=114.78 Aligned_cols=118 Identities=16% Similarity=0.124 Sum_probs=108.5
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
+.++..|..++..|+|++|...|+-+...+|.++.+|+++|.|+..+|+|++|+..|.+|+.++|+++.+++..|.|++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
+|+.+.|..+|+.++.....++.......+++..|...
T Consensus 116 lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~~l 153 (157)
T PRK15363 116 CDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQQL 153 (157)
T ss_pred cCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHh
Confidence 99999999999999999876666666666666666544
No 22
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.1e-15 Score=137.47 Aligned_cols=114 Identities=30% Similarity=0.496 Sum_probs=111.7
Q ss_pred ChhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 023550 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (281)
Q Consensus 1 ma~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 80 (281)
|+..+..+|+.+|..|||+.|+.+|+.+|.++|.|..+|.+|+.||..+|+|++|+.+..++++++|+.+++|.++|.++
T Consensus 1 ~a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~ 80 (539)
T KOG0548|consen 1 KAVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAAL 80 (539)
T ss_pred ChhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHH
Q 023550 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECE 114 (281)
Q Consensus 81 ~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (281)
+.+|+|++|+..|.++++.+|+|..+...+..+.
T Consensus 81 ~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 81 FGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 9999999999999999999999999999998887
No 23
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=6.8e-15 Score=130.77 Aligned_cols=119 Identities=24% Similarity=0.406 Sum_probs=109.7
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---------------AELFADRAQASIKLQNFTEAVADANRAIELE 66 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~---------------~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 66 (281)
|......|+.+|+.|+|..|+..|.+++..-... ..++.|+|.||+++++|.+|+..++++|.++
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 4567789999999999999999999998873321 3568999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 67 PSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 67 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
|.|.+++||+|.+|..+|+|+.|+..|+++++++|+|..+...+.+|..+++..
T Consensus 288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~ 341 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY 341 (397)
T ss_pred CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888776
No 24
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=99.63 E-value=2.4e-15 Score=108.50 Aligned_cols=81 Identities=22% Similarity=0.306 Sum_probs=72.6
Q ss_pred cccccCCCeEEEEEEec-C--CCCcceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCcceEEEeCc-EEEEEEeec
Q 023550 176 HEFYQKPEEVVVTVFAK-G--IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST-KVEIRLAKA 251 (281)
Q Consensus 176 ~~w~Qt~~~v~i~v~~k-~--~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~-kiei~L~K~ 251 (281)
|.|.||.+.|+|+|.++ + +++.+++|+|+.++|+|.++ |..+.++++||++|++++|+|.+.++ .|+|+|.|.
T Consensus 1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~---g~~~~i~G~L~~~V~~des~Wtled~~~l~i~L~K~ 77 (87)
T cd06492 1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLK---GQPPIIDGELYNEVKVEESSWLIEDGKVVTVNLEKI 77 (87)
T ss_pred CccEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEEC---CCceEEeCcccCcccccccEEEEeCCCEEEEEEEEC
Confidence 78999999999999873 3 78899999999999999985 55677999999999999999999885 699999999
Q ss_pred CC-CCCCcc
Q 023550 252 EP-IQWSSL 259 (281)
Q Consensus 252 ~~-~~W~~L 259 (281)
+. ..|++|
T Consensus 78 ~~~~wW~~l 86 (87)
T cd06492 78 NKMEWWSRL 86 (87)
T ss_pred CCCcccccc
Confidence 76 799987
No 25
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.62 E-value=3.3e-15 Score=110.43 Aligned_cols=88 Identities=20% Similarity=0.273 Sum_probs=76.1
Q ss_pred CcccccCCCeEEEEEEec-C-CCCcceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCcceEEEeCcE-EEEEEeec
Q 023550 175 RHEFYQKPEEVVVTVFAK-G-IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTK-VEIRLAKA 251 (281)
Q Consensus 175 r~~w~Qt~~~v~i~v~~k-~-~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~k-iei~L~K~ 251 (281)
+|.|.||.+.|+|+|.++ | ++.+++.|+|+.++|.|.++..++..-.++++||+.|++++|+|.+.+++ |+|+|.|.
T Consensus 6 ~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~~~~i~G~L~~~V~~des~Wtled~~~l~I~L~K~ 85 (102)
T cd06495 6 NYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGEKVLMEGEFTHKINTENSLWSLEPGKCVLLSLSKC 85 (102)
T ss_pred ceEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCCCceEEeCcccCcccCccceEEEeCCCEEEEEEEEC
Confidence 799999999999999875 5 46899999999999999997443433458999999999999999999965 89999999
Q ss_pred CCCCCCccccC
Q 023550 252 EPIQWSSLEFS 262 (281)
Q Consensus 252 ~~~~W~~L~~~ 262 (281)
....|++|-..
T Consensus 86 ~~~wW~~v~~g 96 (102)
T cd06495 86 SEVWWNAVLKG 96 (102)
T ss_pred CCcccchhhCC
Confidence 87889999654
No 26
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=99.62 E-value=2e-15 Score=118.77 Aligned_cols=85 Identities=22% Similarity=0.275 Sum_probs=82.4
Q ss_pred cccccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcCCCCeeeecc-ccccccccCcceEEEeCcEEEEEEeecCCC
Q 023550 176 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQP-RLFGKIIPAKCRYEVLSTKVEIRLAKAEPI 254 (281)
Q Consensus 176 ~~w~Qt~~~v~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~-~L~~~I~p~~s~~~v~~~kiei~L~K~~~~ 254 (281)
|.|.|++.+|.+.|.+.||+.++|+|+|++.+|.+.+....|.+|.+.+ .|.++|.|+.|+.+|.+..|.|.|+|.+..
T Consensus 77 ygWDQs~kfVK~yItL~GV~eenVqv~ftp~Sldl~v~dlqGK~y~~~vnnLlk~I~vEks~~kvKtd~v~I~~kkVe~~ 156 (224)
T KOG3260|consen 77 YGWDQSNKFVKMYITLEGVDEENVQVEFTPMSLDLKVHDLQGKNYRMIVNNLLKPISVEKSSKKVKTDTVLILCKKVENT 156 (224)
T ss_pred cCccccCCeeEEEEEeecccccceeEEecccceeeeeeecCCcceeeehhhhccccChhhcccccccceEEEeehhhhcc
Confidence 9999999999999999999999999999999999999988999999999 799999999999999999999999999999
Q ss_pred CCCccc
Q 023550 255 QWSSLE 260 (281)
Q Consensus 255 ~W~~L~ 260 (281)
.|.-|.
T Consensus 157 rwd~Lt 162 (224)
T KOG3260|consen 157 RWDYLT 162 (224)
T ss_pred cchHHH
Confidence 999996
No 27
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.60 E-value=4.4e-14 Score=110.27 Aligned_cols=116 Identities=18% Similarity=0.301 Sum_probs=109.7
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
...+..|..++..|+|++|+..|.+++..+|.+..++..+|.++..+|++.+|+..+++++.++|.+...++.+|.++..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHH
Q 023550 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (281)
.|++++|+..|+++++++|++..+..+..++...+.
T Consensus 98 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 133 (135)
T TIGR02552 98 LGEPESALKALDLAIEICGENPEYSELKERAEAMLE 133 (135)
T ss_pred cCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh
Confidence 999999999999999999999998888888776553
No 28
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.56 E-value=1.9e-14 Score=125.18 Aligned_cols=118 Identities=25% Similarity=0.340 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
..+..+|+.||++|.|++||.+|++++..+|.|+.++.+||.+|+++++|..|..+|..|+.++....++|-++|.+-+.
T Consensus 98 SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 98 SEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES 177 (536)
T ss_pred HHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
+|...+|...++.++++.|++.++....+.+...+...
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~ 215 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERK 215 (536)
T ss_pred HhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhh
Confidence 99999999999999999999988887777776644443
No 29
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.56 E-value=7.9e-14 Score=113.09 Aligned_cols=119 Identities=34% Similarity=0.479 Sum_probs=108.4
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS-----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK 76 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~-----~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~ 76 (281)
++.+...|+.+|..|+|++|...|..||..-|.. ..+|.+||.|+++++.++.|+.++.++|+++|.+-+++.|+
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 4567889999999999999999999999998875 46788999999999999999999999999999999999999
Q ss_pred HHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 77 ATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 77 g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
|.+|.++..|++|+..|.+.++.+|....+...+.++...+...
T Consensus 175 Aeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~er 218 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINER 218 (271)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHH
Confidence 99999999999999999999999999988877777766555444
No 30
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.52 E-value=3.9e-13 Score=119.21 Aligned_cols=108 Identities=21% Similarity=0.149 Sum_probs=102.2
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (281)
+..++.+|..+...|++++|+..|++++..+|+++.+|.++|.++..+|++++|+..|+++++++|++..+++++|.+++
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhhcCCCChhHHHH
Q 023550 82 KLEEYETAKVALEKGASLAPGDSRFTNL 109 (281)
Q Consensus 82 ~~g~~~~A~~~~~~a~~l~p~~~~~~~~ 109 (281)
..|++++|+..|+++++++|++.....|
T Consensus 144 ~~g~~~eA~~~~~~al~~~P~~~~~~~~ 171 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQDDPNDPYRALW 171 (296)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999999999999998743333
No 31
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.50 E-value=7.1e-14 Score=126.53 Aligned_cols=121 Identities=46% Similarity=0.685 Sum_probs=117.4
Q ss_pred ChhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 023550 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (281)
Q Consensus 1 ma~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 80 (281)
||..+..+|+.++..++|+.|+..|.+||+++|+.+.++.+|+.++++.++|..|+.|+.+|++++|...++|+++|.++
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV 82 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence 57788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhhh
Q 023550 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEET 121 (281)
Q Consensus 81 ~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~ 121 (281)
..++++.+|+..|+....+.|+++.+.+.+..|+.....+.
T Consensus 83 m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~ 123 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEK 123 (476)
T ss_pred HhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999888863
No 32
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.49 E-value=1.2e-12 Score=109.36 Aligned_cols=111 Identities=17% Similarity=0.173 Sum_probs=100.4
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHccC--HHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQAS-IKLQN--FTEAVADANRAIELEPSMSKAYWRKAT 78 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~-~~l~~--~~~A~~~~~~al~l~p~~~~a~~~~g~ 78 (281)
++.|+..|..+...|+|++|+..|.+++.++|+++.++..+|.++ ...|+ +++|.+.++++++++|++..+++.+|.
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~ 152 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLAS 152 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 356889999999999999999999999999999999999999985 67787 599999999999999999999999999
Q ss_pred HHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHH
Q 023550 79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112 (281)
Q Consensus 79 ~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 112 (281)
+++.+|+|++|+.+|+++++++|.+..-...+..
T Consensus 153 ~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~~ 186 (198)
T PRK10370 153 DAFMQADYAQAIELWQKVLDLNSPRVNRTQLVES 186 (198)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence 9999999999999999999998877654444443
No 33
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=6.2e-13 Score=118.13 Aligned_cols=116 Identities=28% Similarity=0.512 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA 79 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~----~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~ 79 (281)
.+...|+.+|+.|+|..|.++|+.+|.++|++ +.+|.+||.+..++|+..+|+.+++.|+.+++...+++.++|.|
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 46788999999999999999999999999987 57799999999999999999999999999999999999999999
Q ss_pred HHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 80 ~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
+..+++|++|.++|+++.++..+ ....+.+.+++..|+..
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkS 370 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKS 370 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHh
Confidence 99999999999999999999887 77888888888888765
No 34
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=1.6e-12 Score=117.70 Aligned_cols=118 Identities=24% Similarity=0.400 Sum_probs=99.9
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (281)
|..+..+|+.+|+.|+|++||.+|+.||.+.|+.+.+|.||+.||..+|+|++.++++.++++++|+..++++||+.++.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhhc-CCCChhHHHHHHHHHHHHHh
Q 023550 82 KLEEYETAKVALEKGASL-APGDSRFTNLIKECEERIAE 119 (281)
Q Consensus 82 ~~g~~~~A~~~~~~a~~l-~p~~~~~~~~l~~~~~~l~~ 119 (281)
.+|++.+|+....-.--+ +=.+......+.+....++.
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~ 233 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAM 233 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHH
Confidence 999999999877643222 22344444444444444433
No 35
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.42 E-value=6.2e-12 Score=95.29 Aligned_cols=107 Identities=15% Similarity=0.109 Sum_probs=98.6
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---HHHHHH
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR 75 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~---~~a~~~ 75 (281)
++.++..|..++..|+|++|+..|.+++..+|++ ..+++.+|.++.+.|++++|+..++.++..+|++ ..+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4678999999999999999999999999998876 5789999999999999999999999999998875 678999
Q ss_pred HHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHH
Q 023550 76 KATACMKLEEYETAKVALEKGASLAPGDSRFTN 108 (281)
Q Consensus 76 ~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~ 108 (281)
+|.++..+|++++|..++.+++...|++.....
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 999999999999999999999999999875443
No 36
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=5.2e-13 Score=105.04 Aligned_cols=91 Identities=24% Similarity=0.303 Sum_probs=81.0
Q ss_pred CcccccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEc-CCCCeeeeccccccccccCcceEEEeCcEEEEEEeecCC
Q 023550 175 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDV-PGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP 253 (281)
Q Consensus 175 r~~w~Qt~~~v~i~v~~k~~~~~~~~v~~~~~~l~~~~~~-~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~ 253 (281)
-..|+|..+.|+++|.+.. ..+++|.+++..|.|+..+ .++..|.++|+||++|+|++|+.++.++.|.++|+|++.
T Consensus 9 ~v~Waqr~~~vyltv~Ved--~~d~~v~~e~~~l~fs~k~~~d~~~~~~~ief~~eIdpe~sk~k~~~r~if~i~~K~e~ 86 (180)
T KOG3158|consen 9 EVKWAQRRDLVYLTVCVED--AKDVHVNLEPSKLTFSCKSGADNHKYENEIEFFDEIDPEKSKHKRTSRSIFCILRKKEL 86 (180)
T ss_pred cchhhhhcCeEEEEEEecc--CccceeeccccEEEEEeccCCCceeeEEeeehhhhcCHhhccccccceEEEEEEEcccc
Confidence 3679999999999999984 5789999999999999876 577778888999999999999999999999999999988
Q ss_pred -CCCCccccCcCcCC
Q 023550 254 -IQWSSLEFSKGAVV 267 (281)
Q Consensus 254 -~~W~~L~~~~~~~~ 267 (281)
..|++|++++.+..
T Consensus 87 ~~~WprLtkeK~K~h 101 (180)
T KOG3158|consen 87 GEYWPRLTKEKAKLH 101 (180)
T ss_pred ccccchhhhcccccc
Confidence 99999998876543
No 37
>PRK15331 chaperone protein SicA; Provisional
Probab=99.40 E-value=9.1e-12 Score=98.99 Aligned_cols=117 Identities=11% Similarity=0.024 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
+..+..|..+|..|+|++|...|+-+...++.++++++.+|.|+..+++|++|+..|..|..++++++...|..|.||+.
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~ 117 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
+|+.+.|+.+|..++. .|.+..++.+.......++..
T Consensus 118 l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~~~ 154 (165)
T PRK15331 118 MRKAAKARQCFELVNE-RTEDESLRAKALVYLEALKTA 154 (165)
T ss_pred hCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHcc
Confidence 9999999999999998 466665555555444444443
No 38
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.39 E-value=6.7e-12 Score=122.09 Aligned_cols=115 Identities=17% Similarity=0.207 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
.+...|..++..|++++|+..|.+++..+|++...|+.+|.++..+|++++|+..+++++.++|+++.+++.+|.+++.+
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~ 412 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIK 412 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 45566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHH
Q 023550 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (281)
Q Consensus 84 g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (281)
|++++|+.+|++++.++|++...+..++.+...++
T Consensus 413 g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g 447 (615)
T TIGR00990 413 GEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEG 447 (615)
T ss_pred CCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCC
Confidence 77777777777777777776666555555544433
No 39
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.39 E-value=8.5e-12 Score=121.36 Aligned_cols=118 Identities=14% Similarity=0.142 Sum_probs=111.1
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
..++..|..++..|+|++|+..|.+++..+|+++.+++.+|.++..+|++++|+.+|++++.++|++..+++.+|.+++.
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
+|++++|+..|++++...|++..+...++.+...+++.
T Consensus 446 ~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~ 483 (615)
T TIGR00990 446 EGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKF 483 (615)
T ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCH
Confidence 99999999999999999999999888888887766654
No 40
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.37 E-value=1.9e-11 Score=86.81 Aligned_cols=99 Identities=32% Similarity=0.493 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
.++..|..++..|++++|+..|.+++...|.+..++..+|.++...+++++|+..+++++.+.|.+..+++.+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHhhhcCCC
Q 023550 84 EEYETAKVALEKGASLAPG 102 (281)
Q Consensus 84 g~~~~A~~~~~~a~~l~p~ 102 (281)
|+++.|...+.++++.+|.
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999988763
No 41
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=99.35 E-value=1.6e-12 Score=102.61 Aligned_cols=86 Identities=17% Similarity=0.219 Sum_probs=73.1
Q ss_pred CCcccccCCCeEEEEEEe-cCC-CCcceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCcceEEEeCcEEEEE-Eee
Q 023550 174 YRHEFYQKPEEVVVTVFA-KGI-PAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIR-LAK 250 (281)
Q Consensus 174 ~r~~w~Qt~~~v~i~v~~-k~~-~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~-L~K 250 (281)
-.|.|+||-+.|.|.|.+ +|+ +..++.|.|..++|+|.++ |++..++++|+++|++++|.|+|.++++.++ |+|
T Consensus 19 ~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~k---g~~~ildG~L~~~vk~des~WtiEd~k~i~i~l~K 95 (179)
T KOG2265|consen 19 EKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLK---GQPPILDGELSHSVKVDESTWTIEDGKMIVILLKK 95 (179)
T ss_pred cceeeeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecC---CCCceecCccccccccccceEEecCCEEEEEEeec
Confidence 469999999999999864 776 8899999999999999987 6667799999999999999999999975555 555
Q ss_pred cCC-CCCCccccC
Q 023550 251 AEP-IQWSSLEFS 262 (281)
Q Consensus 251 ~~~-~~W~~L~~~ 262 (281)
.+. ..|.+|-..
T Consensus 96 ~~~~eWW~~ll~g 108 (179)
T KOG2265|consen 96 SNKMEWWDSLLEG 108 (179)
T ss_pred cchHHHHHHHHcC
Confidence 553 899998643
No 42
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=4.7e-12 Score=105.29 Aligned_cols=99 Identities=29% Similarity=0.485 Sum_probs=95.5
Q ss_pred ChhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 023550 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (281)
Q Consensus 1 ma~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 80 (281)
|++.+..+|+.+|..+.|..|+.+|.++|..+|..+.+|.+||.||+++++++.+.+++++|++++|+..+++|.+|.++
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~ 88 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL 88 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcHHHHHHHHHHhhhc
Q 023550 81 MKLEEYETAKVALEKGASL 99 (281)
Q Consensus 81 ~~~g~~~~A~~~~~~a~~l 99 (281)
.....|.+|+..++++..+
T Consensus 89 l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 89 LQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HhhccccHHHHHHHHHHHH
Confidence 9999999999999999665
No 43
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.33 E-value=4.3e-12 Score=117.77 Aligned_cols=113 Identities=20% Similarity=0.184 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
+++++.|+.+-..+.|++|+.+|.+|+.+.|+++.++-++|.+|+..|..+.|+..|++||.++|.++.++.++|.++-.
T Consensus 253 dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd 332 (966)
T KOG4626|consen 253 DAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKD 332 (966)
T ss_pred HHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHh
Confidence 34555666655555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHH
Q 023550 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEE 115 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 115 (281)
.|+..+|..+|.++++++|+.++....++.+..
T Consensus 333 ~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 333 KGSVTEAVDCYNKALRLCPNHADAMNNLGNIYR 365 (966)
T ss_pred ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 555555555555555555555544444444433
No 44
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.32 E-value=7.1e-12 Score=86.29 Aligned_cols=66 Identities=35% Similarity=0.519 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhh-cHHHHHHHHHHhhhcCC
Q 023550 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE-EYETAKVALEKGASLAP 101 (281)
Q Consensus 36 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g-~~~~A~~~~~~a~~l~p 101 (281)
+..|..+|.+++..|+|++|+..|.+++.++|+++.+++++|.++..+| ++++|+.+|+++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4455555555555555555555555555555555555555555555555 45555555555555544
No 45
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.31 E-value=1.2e-11 Score=85.17 Aligned_cols=66 Identities=30% Similarity=0.502 Sum_probs=64.0
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHcCC
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEP 67 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~-~~~~A~~~~~~al~l~p 67 (281)
|..++..|..++..|+|++|+..|+++++.+|+++.+++++|.+|..+| ++.+|+.+++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 5788999999999999999999999999999999999999999999999 79999999999999987
No 46
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.30 E-value=4.6e-11 Score=99.15 Aligned_cols=119 Identities=16% Similarity=0.034 Sum_probs=105.5
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (281)
+......|..|+..||+..|...++++|+.+|++..+|..||..|.++|+.+.|.+.|++|+.++|++++++-+.|.-++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhhc--CCCChhHHHHHHHHHHHHHhh
Q 023550 82 KLEEYETAKVALEKGASL--APGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 82 ~~g~~~~A~~~~~~a~~l--~p~~~~~~~~l~~~~~~l~~~ 120 (281)
.+|+|++|...|++|+.. .+.....+..+..|..+.++.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~ 155 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQF 155 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCc
Confidence 999999999999998864 455556677777776654443
No 47
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.30 E-value=4.6e-11 Score=116.41 Aligned_cols=119 Identities=12% Similarity=-0.013 Sum_probs=98.3
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (281)
++.++..|......|.|++|+.++..++.+.|++..++.++|.++.+++++++|+..+++++..+|+++.+++.+|.++.
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~ 165 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWD 165 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 35677788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 82 ~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
++|+|++|..+|++++..+|++..++..++.+...+++.
T Consensus 166 ~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~ 204 (694)
T PRK15179 166 EIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGAL 204 (694)
T ss_pred HhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Confidence 888888888888888888887777777766666655443
No 48
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.30 E-value=2.3e-11 Score=113.01 Aligned_cols=112 Identities=17% Similarity=0.183 Sum_probs=100.4
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (281)
|...-+.|..+.++|++++|+.+|.++|+..|..+++|.++|..|-.+|+...|+++|.+||.++|..++++-++|.+|.
T Consensus 388 aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k 467 (966)
T KOG4626|consen 388 AAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYK 467 (966)
T ss_pred hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh
Confidence 34566788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhhcCCCChhHHHHHHHH
Q 023550 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (281)
Q Consensus 82 ~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (281)
..|+..+|+..|+.++++.|+-+++.-.+..|
T Consensus 468 DsGni~~AI~sY~~aLklkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 468 DSGNIPEAIQSYRTALKLKPDFPDAYCNLLHC 499 (966)
T ss_pred ccCCcHHHHHHHHHHHccCCCCchhhhHHHHH
Confidence 99999999999999999999887754444433
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=3.3e-11 Score=108.59 Aligned_cols=112 Identities=20% Similarity=0.277 Sum_probs=69.9
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHH
Q 023550 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET 88 (281)
Q Consensus 9 g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~ 88 (281)
||-|--.++.++|+.+|++|++++|....+|..+|.-|+.+++...|++.|++|+.++|.+..+||.+|++|.-++-..=
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~Y 416 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFY 416 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHH
Confidence 44444555566666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 89 AKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 89 A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
|+-+|++|+.+.|+|+..|..++.|..++++.
T Consensus 417 aLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~ 448 (559)
T KOG1155|consen 417 ALYYFQKALELKPNDSRLWVALGECYEKLNRL 448 (559)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHhccH
Confidence 66666666666666666666666666555554
No 50
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.29 E-value=8.9e-11 Score=95.82 Aligned_cols=110 Identities=19% Similarity=0.217 Sum_probs=96.6
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~ 78 (281)
+..++..|..+...|+|++|+.+|.+++...|+. ..++.++|.++.++|++++|+..+.+++.+.|.+..++..+|.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4567889999999999999999999999887653 4689999999999999999999999999999999999999999
Q ss_pred HHHHhhc--------------HHHHHHHHHHhhhcCCCCh-hHHHHHH
Q 023550 79 ACMKLEE--------------YETAKVALEKGASLAPGDS-RFTNLIK 111 (281)
Q Consensus 79 ~~~~~g~--------------~~~A~~~~~~a~~l~p~~~-~~~~~l~ 111 (281)
++..+|+ +.+|..++++++.++|++. .+..|+.
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 162 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLK 162 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHH
Confidence 9999887 6888999999999999874 2344433
No 51
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.29 E-value=7e-12 Score=117.10 Aligned_cols=118 Identities=18% Similarity=0.278 Sum_probs=112.4
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
+.|...|+.+--+++++.||++|.+|+.++|+..-+|..+|.-+.....|+.|..+|+.||..+|.+..|||.+|.+|.+
T Consensus 422 esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K 501 (638)
T KOG1126|consen 422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK 501 (638)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
+++++.|.-.|++|++++|.+..+.-.++..+.+++..
T Consensus 502 qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~ 539 (638)
T KOG1126|consen 502 QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRK 539 (638)
T ss_pred cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhh
Confidence 99999999999999999999999999999998888876
No 52
>PRK12370 invasion protein regulator; Provisional
Probab=99.28 E-value=6.7e-11 Score=113.65 Aligned_cols=112 Identities=16% Similarity=0.040 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhh
Q 023550 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (281)
Q Consensus 5 ~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g 84 (281)
+...|..+...|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..++++++++|.+..+++.++.+++..|
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g 420 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHT 420 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcc
Confidence 34445555555555555555555555555555555555555555555555555555555555555444444444455555
Q ss_pred cHHHHHHHHHHhhhcC-CCChhHHHHHHHHHHH
Q 023550 85 EYETAKVALEKGASLA-PGDSRFTNLIKECEER 116 (281)
Q Consensus 85 ~~~~A~~~~~~a~~l~-p~~~~~~~~l~~~~~~ 116 (281)
++++|+.++++++... |+++.....++.+...
T Consensus 421 ~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~ 453 (553)
T PRK12370 421 GIDDAIRLGDELRSQHLQDNPILLSMQVMFLSL 453 (553)
T ss_pred CHHHHHHHHHHHHHhccccCHHHHHHHHHHHHh
Confidence 5555555555555443 4444444444444433
No 53
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.28 E-value=1.2e-11 Score=88.82 Aligned_cols=82 Identities=27% Similarity=0.406 Sum_probs=73.8
Q ss_pred HhcCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHH
Q 023550 14 IDDYFELAYDLYSQAIEISPN--SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKV 91 (281)
Q Consensus 14 ~~~~y~~Al~~y~~al~~~p~--~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~ 91 (281)
..|+|+.|+..|++++..+|. +..+++.+|.||+++|+|++|+..+++ +..++.+...++.+|.|++.+|+|++|+.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 467788899999999999999999999 88889999999999999999999999999
Q ss_pred HHHHh
Q 023550 92 ALEKG 96 (281)
Q Consensus 92 ~~~~a 96 (281)
+|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 54
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=3.8e-11 Score=104.24 Aligned_cols=101 Identities=27% Similarity=0.435 Sum_probs=92.5
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~----~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g 77 (281)
|..+...||.||+.++|..|+..|+++|.....+ +.+|.|||.|.+.+|+|..|+.++.+++.++|.+.++++|-|
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 6778999999999999999999999999986555 577999999999999999999999999999999999999999
Q ss_pred HHHHHhhcHHHHHHHHHHhhhcCCC
Q 023550 78 TACMKLEEYETAKVALEKGASLAPG 102 (281)
Q Consensus 78 ~~~~~~g~~~~A~~~~~~a~~l~p~ 102 (281)
.|++.++++++|..+++..+..+-.
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 9999999999988888877666543
No 55
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.2e-10 Score=105.10 Aligned_cols=118 Identities=17% Similarity=0.148 Sum_probs=112.6
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
..|-..|..++.+++-..|+..|++|++.+|.|..+|+.+|++|.-++-..-|+-.|++|+.+.|.+...|..+|.||.+
T Consensus 365 ~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k 444 (559)
T KOG1155|consen 365 SAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEK 444 (559)
T ss_pred HHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 35667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
+++.++|+.||.+++.....+..+...+++++++++..
T Consensus 445 l~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~ 482 (559)
T KOG1155|consen 445 LNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDL 482 (559)
T ss_pred hccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhH
Confidence 99999999999999999988888999999999998876
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.27 E-value=1.8e-10 Score=96.34 Aligned_cols=117 Identities=19% Similarity=0.156 Sum_probs=93.0
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (281)
+..+...|..++..|+|++|+..|.+++..+|++..++..+|.++..+|++++|+..+++++.++|.+..+++.+|.+++
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 45677788888899999999999999988888888888889999999999999999999999888888888888888888
Q ss_pred HhhcHHHHHHHHHHhhhcC--CCChhHHHHHHHHHHHHH
Q 023550 82 KLEEYETAKVALEKGASLA--PGDSRFTNLIKECEERIA 118 (281)
Q Consensus 82 ~~g~~~~A~~~~~~a~~l~--p~~~~~~~~l~~~~~~l~ 118 (281)
..|++++|...|++++... +........++.+....+
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 149 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAG 149 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcC
Confidence 8888888888888887753 233334444444444333
No 57
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.27 E-value=4.6e-11 Score=94.72 Aligned_cols=97 Identities=21% Similarity=0.208 Sum_probs=90.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcC
Q 023550 21 AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLA 100 (281)
Q Consensus 21 Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~ 100 (281)
-..+|++++..+|++ +..+|.++...|++++|+..|++++.++|.+..+|+.+|.++..+|++++|+.+|++++.++
T Consensus 12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 12 PEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 346799999999875 66799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhh
Q 023550 101 PGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 101 p~~~~~~~~l~~~~~~l~~~ 120 (281)
|++...+..++.|...+++.
T Consensus 89 p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCH
Confidence 99999999999998887776
No 58
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.27 E-value=1.2e-10 Score=117.57 Aligned_cols=111 Identities=14% Similarity=0.032 Sum_probs=100.9
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
..+...|..+.+.|++++|+..|.+++..+|+++.++.++|.++..+|++++|+..++++++++|+++.+++.+|.++..
T Consensus 610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~ 689 (987)
T PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR 689 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhhcCCCChhHHHHHHHH
Q 023550 83 LEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (281)
+|++++|+.+|++++.++|++..+......+
T Consensus 690 lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~ 720 (987)
T PRK09782 690 LDDMAATQHYARLVIDDIDNQALITPLTPEQ 720 (987)
T ss_pred CCCHHHHHHHHHHHHhcCCCCchhhhhhhHH
Confidence 9999999999999999999987765444443
No 59
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.26 E-value=3.8e-11 Score=112.24 Aligned_cols=118 Identities=19% Similarity=0.272 Sum_probs=112.9
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
.+|+..|..|++.++|+.|..+|.+|+..+|.+..+..-.|..+.++|+.++|++.+++|+.++|.++...|.+|.+++.
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~ 569 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFS 569 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
+++|++|+..+++..++-|++..+...++++..++++.
T Consensus 570 ~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 570 LGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNT 607 (638)
T ss_pred hcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999887
No 60
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.26 E-value=1.8e-11 Score=85.96 Aligned_cols=73 Identities=26% Similarity=0.374 Sum_probs=67.7
Q ss_pred cccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcC-------CCCeeeeccccccccccCcceEEEeCcEEEEEEee
Q 023550 178 FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP-------GEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAK 250 (281)
Q Consensus 178 w~Qt~~~v~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~-------~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K 250 (281)
|+|+++.|+|+|.++|+.++++.|++.++.|.|.+... .+..|.+.+.|+++|++++|++++.+++|+|+|.|
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~K 80 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLEITLPK 80 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEEEcC
Confidence 99999999999999999999999999999999997654 24679999999999999999999999999999987
No 61
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=5.2e-11 Score=107.98 Aligned_cols=110 Identities=24% Similarity=0.309 Sum_probs=76.8
Q ss_pred ChhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 023550 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (281)
Q Consensus 1 ma~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 80 (281)
||..+...|..+|-.|++..|...|+++|.++|.+..+|+.||.+|...++-++...+|++|..++|.++..||.||+.+
T Consensus 325 ~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~ 404 (606)
T KOG0547|consen 325 MAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMR 404 (606)
T ss_pred HHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHH
Confidence 46666667777777777777777777777777777666777777777777777777777777777777777777777777
Q ss_pred HHhhcHHHHHHHHHHhhhcCCCChhHHHHH
Q 023550 81 MKLEEYETAKVALEKGASLAPGDSRFTNLI 110 (281)
Q Consensus 81 ~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l 110 (281)
+-+++|++|+..|+++++++|++......+
T Consensus 405 flL~q~e~A~aDF~Kai~L~pe~~~~~iQl 434 (606)
T KOG0547|consen 405 FLLQQYEEAIADFQKAISLDPENAYAYIQL 434 (606)
T ss_pred HHHHHHHHHHHHHHHHhhcChhhhHHHHHH
Confidence 777777777777777777777665433333
No 62
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.25 E-value=1.1e-10 Score=97.60 Aligned_cols=106 Identities=14% Similarity=0.135 Sum_probs=98.7
Q ss_pred hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH-HHhhc--HHHHHH
Q 023550 15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC-MKLEE--YETAKV 91 (281)
Q Consensus 15 ~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~-~~~g~--~~~A~~ 91 (281)
.++.++++..|.+++..+|++...|..+|.+|..+|++++|+..|+++++++|++..+++.+|.++ +..|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 567799999999999999999999999999999999999999999999999999999999999985 67787 599999
Q ss_pred HHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 92 ALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 92 ~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
.++++++++|++..+...++.+...+++.
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~ 160 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADY 160 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCH
Confidence 99999999999999999998888777665
No 63
>PRK12370 invasion protein regulator; Provisional
Probab=99.25 E-value=1.4e-10 Score=111.46 Aligned_cols=94 Identities=12% Similarity=0.017 Sum_probs=89.3
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 023550 16 DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEK 95 (281)
Q Consensus 16 ~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~ 95 (281)
+++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++..+|++++|+.+|++
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCChhHHHH
Q 023550 96 GASLAPGDSRFTNL 109 (281)
Q Consensus 96 a~~l~p~~~~~~~~ 109 (281)
+++++|.+.....+
T Consensus 398 Al~l~P~~~~~~~~ 411 (553)
T PRK12370 398 CLKLDPTRAAAGIT 411 (553)
T ss_pred HHhcCCCChhhHHH
Confidence 99999998765444
No 64
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.24 E-value=3e-10 Score=96.99 Aligned_cols=109 Identities=24% Similarity=0.235 Sum_probs=99.1
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHH---HHHH
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA---ELFADRAQASIKLQNFTEAVADANRAIELEPSMSK---AYWR 75 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~---~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~---a~~~ 75 (281)
++.++..|..++..|+|++|+..|.+++..+|+++ .+++.+|.+|..+|++++|+..++++++..|++.. +++.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 46789999999999999999999999999999876 57899999999999999999999999999998765 7999
Q ss_pred HHHHHHHh--------hcHHHHHHHHHHhhhcCCCChhHHHHH
Q 023550 76 KATACMKL--------EEYETAKVALEKGASLAPGDSRFTNLI 110 (281)
Q Consensus 76 ~g~~~~~~--------g~~~~A~~~~~~a~~l~p~~~~~~~~l 110 (281)
+|.+++.. |++++|+..|++++..+|++......+
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~ 155 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK 155 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH
Confidence 99999987 899999999999999999987654333
No 65
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.23 E-value=6.8e-11 Score=103.23 Aligned_cols=103 Identities=21% Similarity=0.278 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
+..+..|+.++..|+|.+|+..|-.|++.+|++..+++.||.+|+.+|+-..|+.++.++|++.|++..+...+|.+++.
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhhcCCCChh
Q 023550 83 LEEYETAKVALEKGASLAPGDSR 105 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~l~p~~~~ 105 (281)
+|+++.|...|...+..+|++..
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~ 141 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGL 141 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcch
Confidence 99999999999999999996543
No 66
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.22 E-value=4.2e-11 Score=110.43 Aligned_cols=116 Identities=18% Similarity=0.252 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
-....|..|+-.|+|++|+.+|+.||...|+|..+|.++|..+....+.++|+..|++|+++.|.+..++|++|++|..+
T Consensus 432 vQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNl 511 (579)
T KOG1125|consen 432 VQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNL 511 (579)
T ss_pred HHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhh
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHhhhcCCCC----------hhHHHHHHHHHHHHHh
Q 023550 84 EEYETAKVALEKGASLAPGD----------SRFTNLIKECEERIAE 119 (281)
Q Consensus 84 g~~~~A~~~~~~a~~l~p~~----------~~~~~~l~~~~~~l~~ 119 (281)
|.|.+|..+|-.++.+.+.. ..+|..++.+-..+++
T Consensus 512 G~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~ 557 (579)
T KOG1125|consen 512 GAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNR 557 (579)
T ss_pred hhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCC
Confidence 99999999999999986651 2367767655444433
No 67
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.21 E-value=5.8e-10 Score=93.22 Aligned_cols=118 Identities=14% Similarity=0.142 Sum_probs=97.3
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHH
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE--PSMSKAYWRKATAC 80 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~--p~~~~a~~~~g~~~ 80 (281)
..+...|..++..|++++|+..|.+++...|++..++.++|.++...|++++|+..+.+++... +.....++.+|.++
T Consensus 66 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (234)
T TIGR02521 66 LAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCA 145 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 3456778888999999999999999999999888888899999999999999999999988754 45567888889999
Q ss_pred HHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 81 ~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
...|++++|...|.+++..+|++......++.+....++.
T Consensus 146 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 146 LKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCH
Confidence 9999999999999999988888877776666665554443
No 68
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.19 E-value=2.6e-10 Score=88.76 Aligned_cols=98 Identities=22% Similarity=0.239 Sum_probs=93.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCC
Q 023550 23 DLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG 102 (281)
Q Consensus 23 ~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~ 102 (281)
+.|.+++..+|++...++.+|.+++..|++++|+..+++++.++|.+..+++.+|.+++.+|++++|..+|++++..+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHhh
Q 023550 103 DSRFTNLIKECEERIAEE 120 (281)
Q Consensus 103 ~~~~~~~l~~~~~~l~~~ 120 (281)
+...+..++.+....++.
T Consensus 84 ~~~~~~~la~~~~~~g~~ 101 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEP 101 (135)
T ss_pred ChHHHHHHHHHHHHcCCH
Confidence 999999999988877665
No 69
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.19 E-value=5.2e-10 Score=94.55 Aligned_cols=115 Identities=18% Similarity=0.145 Sum_probs=108.9
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhc
Q 023550 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE 85 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~ 85 (281)
..+|..+++.|+|.+|+..+.++....|++..+|..+|.+|.++|++++|...|.+++++.|..+.+.-++|..|+-.|+
T Consensus 104 ~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 104 AAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 86 YETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 86 ~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
++.|...+..+....+.+..+...+..+....++.
T Consensus 184 ~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 184 LEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCCh
Confidence 99999999999999999999988888887766665
No 70
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.17 E-value=1.4e-10 Score=101.80 Aligned_cols=117 Identities=21% Similarity=0.193 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
-+...|..+.+.|++++|+..|.++++.+|++..+...++.+++.+|+++++.+.+.......|.++..+..+|.+++.+
T Consensus 148 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l 227 (280)
T PF13429_consen 148 FWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQL 227 (280)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc
Confidence 46778999999999999999999999999999999999999999999999998888888888888888999999999999
Q ss_pred hcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 84 g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
|++++|+.+|++++..+|+|+.+...++.+....++.
T Consensus 228 g~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~ 264 (280)
T PF13429_consen 228 GRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRK 264 (280)
T ss_dssp T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----
T ss_pred ccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999888777765
No 71
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=7.6e-10 Score=92.68 Aligned_cols=117 Identities=24% Similarity=0.334 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCCC----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNS----------AELFADRAQASIKLQNFTEAVADANRAIEL 65 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~--------~p~~----------~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 65 (281)
.+.++||.+|+.|+|.+|...|..|+.. .|.+ ..++.|.++|++..|+|-++++.+...|..
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 5778999999999999999999999754 4444 346889999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhH-HHHHHHHHHHHHhh
Q 023550 66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF-TNLIKECEERIAEE 120 (281)
Q Consensus 66 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~-~~~l~~~~~~l~~~ 120 (281)
+|.+.+|||++|.++...-+.++|...|..+++++|.-..+ .+.+..+..++...
T Consensus 260 ~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek 315 (329)
T KOG0545|consen 260 HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEK 315 (329)
T ss_pred CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999987654 56666666665554
No 72
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.17 E-value=1.2e-09 Score=94.99 Aligned_cols=107 Identities=11% Similarity=0.003 Sum_probs=96.5
Q ss_pred hHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC---cHHHHHH
Q 023550 3 TDLEKKAKEA-FIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWR 75 (281)
Q Consensus 3 ~~~~~~g~~~-~~~~~y~~Al~~y~~al~~~p~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~---~~~a~~~ 75 (281)
...+..|..+ ++.|+|++|+..|...+...|++ +.+++.+|.+|+..|+|++|+..|.+++...|+ .+++++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4567788876 56799999999999999999998 589999999999999999999999999998876 5889999
Q ss_pred HHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHH
Q 023550 76 KATACMKLEEYETAKVALEKGASLAPGDSRFTNL 109 (281)
Q Consensus 76 ~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~ 109 (281)
+|.++..+|++++|...|+++++..|+......-
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A 256 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQA 256 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 9999999999999999999999999998755433
No 73
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.16 E-value=5.4e-10 Score=112.88 Aligned_cols=111 Identities=23% Similarity=0.296 Sum_probs=102.9
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHH
Q 023550 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET 88 (281)
Q Consensus 9 g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~ 88 (281)
+..+...|++++|+..|.+++..+|+ ..++.++|.++.++|++++|+..+++++.++|+++.++..+|.++...|++++
T Consensus 583 a~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 583 HAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 33444559999999999999999996 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 89 AKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 89 A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
|+..|+++++++|++..++..++.+...+++.
T Consensus 662 Ai~~l~~AL~l~P~~~~a~~nLA~al~~lGd~ 693 (987)
T PRK09782 662 SREMLERAHKGLPDDPALIRQLAYVNQRLDDM 693 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 99999999999999999999998888776665
No 74
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.15 E-value=1.9e-10 Score=78.15 Aligned_cols=62 Identities=23% Similarity=0.350 Sum_probs=29.7
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc
Q 023550 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM 69 (281)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 69 (281)
+|..++..|+|++|+..|++++..+|+++.+++.+|.++..+|++++|+..|++++.++|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 44444444555555555555544444444444445555544455555554444444444443
No 75
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.15 E-value=1e-09 Score=89.09 Aligned_cols=103 Identities=18% Similarity=0.210 Sum_probs=88.6
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~ 78 (281)
+..++..|..+...|+|++|+..|.+++...++. +.++.++|.++..+|++++|+..+++++.++|.....+..+|.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4567889999999999999999999999887663 4589999999999999999999999999999999999999999
Q ss_pred HHH-------HhhcHH-------HHHHHHHHhhhcCCCCh
Q 023550 79 ACM-------KLEEYE-------TAKVALEKGASLAPGDS 104 (281)
Q Consensus 79 ~~~-------~~g~~~-------~A~~~~~~a~~l~p~~~ 104 (281)
++. .+|+++ +|..+|++++..+|.+.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 998 667766 56666667777887653
No 76
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.15 E-value=1.7e-10 Score=78.36 Aligned_cols=65 Identities=20% Similarity=0.326 Sum_probs=60.8
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCCh
Q 023550 40 ADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104 (281)
Q Consensus 40 ~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~ 104 (281)
+.+|..++..|+|++|+..|+++++.+|.+..+++.+|.+++.+|++++|+..|+++++++|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999874
No 77
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=2.6e-09 Score=92.38 Aligned_cols=118 Identities=20% Similarity=0.166 Sum_probs=105.1
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ---NFTEAVADANRAIELEPSMSKAYWRKAT 78 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~---~~~~A~~~~~~al~l~p~~~~a~~~~g~ 78 (281)
++.|...|..|+..|++..|...|.+|+++.|++++++..+|.+++... .-.++...+++++.++|.+..+.+.+|.
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~ 235 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAF 235 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999998874 4788999999999999999999999999
Q ss_pred HHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHh
Q 023550 79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (281)
Q Consensus 79 ~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (281)
.++..|+|.+|...++..+...|.+..-...+.+.......
T Consensus 236 ~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~~~~ 276 (287)
T COG4235 236 AAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIARALA 276 (287)
T ss_pred HHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHh
Confidence 99999999999999999999999887665555555443333
No 78
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.14 E-value=1.1e-09 Score=99.66 Aligned_cols=117 Identities=15% Similarity=0.182 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
..+..+...+..|++++|+..++..+...|+|+.++..++.++++.++..+|.+.+++++.++|.....++.+|.+|+..
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~ 387 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhc
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 84 g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
|++++|+..++..+..+|+++..|..+++.+..+++.
T Consensus 388 g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 388 GKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred CChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCch
Confidence 9999999999999999999999999999999988876
No 79
>PLN02789 farnesyltranstransferase
Probab=99.13 E-value=1.6e-09 Score=96.87 Aligned_cols=115 Identities=13% Similarity=0.002 Sum_probs=100.2
Q ss_pred hHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH--HHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 023550 3 TDLEKKAKEAFIDD-YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNF--TEAVADANRAIELEPSMSKAYWRKATA 79 (281)
Q Consensus 3 ~~~~~~g~~~~~~~-~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~--~~A~~~~~~al~l~p~~~~a~~~~g~~ 79 (281)
..|..+|..+...| ++++|+..+++++..+|++..+|..|+.++.++++. .+++..++++++++|.+..+|..+|.+
T Consensus 72 taW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~ 151 (320)
T PLN02789 72 TVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWV 151 (320)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 45777888888887 689999999999999999999999999999888874 678888999999999999999999999
Q ss_pred HHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 023550 80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (281)
Q Consensus 80 ~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (281)
+..+|+|++|+.++.++++.+|.|..++..+..+...+
T Consensus 152 l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 152 LRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 99999999999999999999999988887777765443
No 80
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.13 E-value=2.7e-09 Score=83.16 Aligned_cols=106 Identities=23% Similarity=0.233 Sum_probs=96.1
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---HHHHHH
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR 75 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~---~~a~~~ 75 (281)
+..++..|...++.|+|.+|++.|..+....|.. ..+.+.++.+|++.++|++|+..+++.++++|.+ .-++|.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 4578999999999999999999999999987775 5789999999999999999999999999999976 558999
Q ss_pred HHHHHHHhhc---------------HHHHHHHHHHhhhcCCCChhHH
Q 023550 76 KATACMKLEE---------------YETAKVALEKGASLAPGDSRFT 107 (281)
Q Consensus 76 ~g~~~~~~g~---------------~~~A~~~~~~a~~l~p~~~~~~ 107 (281)
+|.+++.+.. ...|...|++.++..|++..+.
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 9999999987 8899999999999999887543
No 81
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.13 E-value=1e-09 Score=107.48 Aligned_cols=102 Identities=13% Similarity=0.106 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhcCHHH----HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 023550 5 LEKKAKEAFIDDYFEL----AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (281)
Q Consensus 5 ~~~~g~~~~~~~~y~~----Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 80 (281)
+...|..++..|++++ |+..|++++..+|+++.++..+|.++...|++++|+..+++++.++|++..+++.+|.++
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l 328 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4455666666666664 566677776666766666666777777777777777777777777776666666667777
Q ss_pred HHhhcHHHHHHHHHHhhhcCCCChhH
Q 023550 81 MKLEEYETAKVALEKGASLAPGDSRF 106 (281)
Q Consensus 81 ~~~g~~~~A~~~~~~a~~l~p~~~~~ 106 (281)
..+|++++|+..|++++..+|++...
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~~ 354 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSKW 354 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchHH
Confidence 67777777777776666666665443
No 82
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.12 E-value=1e-09 Score=107.51 Aligned_cols=114 Identities=12% Similarity=0.045 Sum_probs=105.2
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH----HHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023550 7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTE----AVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 7 ~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~----A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
..|..+...|++++|+..|.+++..+|+++.++.++|.++..+|++++ |+..+++++.++|++..++..+|.++..
T Consensus 217 ~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 296 (656)
T PRK15174 217 LAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR 296 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 347788899999999999999999999999999999999999999996 8999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
.|++++|+..|++++.++|++..+...++.+...+++.
T Consensus 297 ~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~ 334 (656)
T PRK15174 297 TGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQY 334 (656)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 99999999999999999999998888887776555443
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.11 E-value=1.2e-09 Score=90.79 Aligned_cols=117 Identities=15% Similarity=0.103 Sum_probs=103.5
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHH
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL--EPSMSKAYWRKATAC 80 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l--~p~~~~a~~~~g~~~ 80 (281)
..+..+|..|...|+.+.|-+.|++|+.++|++.+++.|.|..+...|+|++|.+.|++|+.. -+..+..+-++|.|-
T Consensus 70 ~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Ca 149 (250)
T COG3063 70 LAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCA 149 (250)
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHH
Confidence 356778889999999999999999999999999999999999999999999999999999964 245688999999999
Q ss_pred HHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHh
Q 023550 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (281)
Q Consensus 81 ~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (281)
++.|+++.|...|+++++++|+.+.....+.+.+..-++
T Consensus 150 l~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 150 LKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGD 188 (250)
T ss_pred hhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhccc
Confidence 999999999999999999999988766666655544333
No 84
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.09 E-value=2.7e-09 Score=102.94 Aligned_cols=118 Identities=14% Similarity=0.122 Sum_probs=109.2
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
..++.+|+.+|..|++++|.+.+.++|+++|.++.+|+.+|.+|..+|+.++|+...-.|-.++|.+...|.+++....+
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
+|.+..|.-||.+|+..+|.+-.+......+..+++..
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~ 257 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDL 257 (895)
T ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChH
Confidence 99999999999999999999977766666666655554
No 85
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.07 E-value=4.1e-09 Score=102.94 Aligned_cols=115 Identities=12% Similarity=0.028 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
......|..+.+.+++++|+..+++++..+|+++.+++.+|.++..+|+|++|+..|++++..+|++..++..+|.++..
T Consensus 121 ~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~ 200 (694)
T PRK15179 121 EAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTR 200 (694)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhhcCCCCh-hHHHHHHHHHHHH
Q 023550 83 LEEYETAKVALEKGASLAPGDS-RFTNLIKECEERI 117 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~l~p~~~-~~~~~l~~~~~~l 117 (281)
+|+.++|..+|++++....... .+...+.++...+
T Consensus 201 ~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 236 (694)
T PRK15179 201 RGALWRARDVLQAGLDAIGDGARKLTRRLVDLNADL 236 (694)
T ss_pred cCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHH
Confidence 9999999999999998765433 3344454444433
No 86
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.06 E-value=3.1e-09 Score=90.73 Aligned_cols=118 Identities=15% Similarity=0.077 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHc--------cCHHHHHHHHHHHHHcCCCcHH
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE---LFADRAQASIKL--------QNFTEAVADANRAIELEPSMSK 71 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~---~~~~~a~~~~~l--------~~~~~A~~~~~~al~l~p~~~~ 71 (281)
..++..|..++..|+|++|+..|.++++.+|+++. +++.+|.++... |++++|+..+++++..+|++..
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 150 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEY 150 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChh
Confidence 35688999999999999999999999999998865 689999999987 8999999999999999998754
Q ss_pred HH-----------------HHHHHHHHHhhcHHHHHHHHHHhhhcCCCCh---hHHHHHHHHHHHHHhh
Q 023550 72 AY-----------------WRKATACMKLEEYETAKVALEKGASLAPGDS---RFTNLIKECEERIAEE 120 (281)
Q Consensus 72 a~-----------------~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~---~~~~~l~~~~~~l~~~ 120 (281)
++ +.+|..|+..|++.+|+..|++++...|+++ .++..++.+...+++.
T Consensus 151 ~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~ 219 (235)
T TIGR03302 151 APDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLK 219 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCH
Confidence 32 4678899999999999999999999988754 5667777777766664
No 87
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=99.04 E-value=5.2e-09 Score=79.67 Aligned_cols=99 Identities=27% Similarity=0.330 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc----HHHHHHHHHH
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM----SKAYWRKATA 79 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~----~~a~~~~g~~ 79 (281)
.+-.+|..+-..|+.+.|++.|.++|.+-|..+.+|.+||+++...|+.++|++++++|+++.... -.++..+|.+
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l 124 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL 124 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 455679999999999999999999999999999999999999999999999999999999997543 4478899999
Q ss_pred HHHhhcHHHHHHHHHHhhhcCCC
Q 023550 80 CMKLEEYETAKVALEKGASLAPG 102 (281)
Q Consensus 80 ~~~~g~~~~A~~~~~~a~~l~p~ 102 (281)
|..+|+.+.|...|+.+-++...
T Consensus 125 yRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 125 YRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHHhCchHHHHHhHHHHHHhCCH
Confidence 99999999999999999888754
No 88
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.04 E-value=2.8e-09 Score=94.56 Aligned_cols=106 Identities=17% Similarity=0.038 Sum_probs=93.6
Q ss_pred hcCHHHHHHHHHHHHhcCC---C-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHH
Q 023550 15 DDYFELAYDLYSQAIEISP---N-SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAK 90 (281)
Q Consensus 15 ~~~y~~Al~~y~~al~~~p---~-~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~ 90 (281)
.+..+.++..++++|...+ . .+.+|+.+|.+|..+|++++|+.+|+++++++|+++.+|+.+|.++..+|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4566889999999997433 3 37789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 91 VALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 91 ~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
.+|+++++++|++..++..++.+....++.
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 148 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRY 148 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 999999999999998888877776544443
No 89
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.04 E-value=5.6e-09 Score=104.10 Aligned_cols=112 Identities=11% Similarity=0.100 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
..+...|..+...|++++|+.+|++++..+|+++.++..+|.++...|++++|+..+++++..+|++.. ++.+|.++..
T Consensus 50 ~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~ 128 (765)
T PRK10049 50 RGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKR 128 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH
Confidence 357888999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred hhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHH
Q 023550 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEE 115 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 115 (281)
.|++++|+..|+++++++|++..+...+..+..
T Consensus 129 ~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~ 161 (765)
T PRK10049 129 AGRHWDELRAMTQALPRAPQTQQYPTEYVQALR 161 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999999999988777766554
No 90
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.03 E-value=4.5e-09 Score=104.68 Aligned_cols=116 Identities=22% Similarity=0.182 Sum_probs=104.2
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
..+...|..++..|+|++|+..|.+++..+|++..++..+|.++...|++++|+..+++++..+|.+..+++.+|.+++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (899)
T TIGR02917 126 ELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLS 205 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHH
Q 023550 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (281)
.|++++|..+|++++..+|++......+..+....+
T Consensus 206 ~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g 241 (899)
T TIGR02917 206 LGNIELALAAYRKAIALRPNNPAVLLALATILIEAG 241 (899)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999998877776666654433
No 91
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.03 E-value=1.8e-08 Score=84.56 Aligned_cols=119 Identities=27% Similarity=0.250 Sum_probs=97.2
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---HHHHHH
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR 75 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~---~~a~~~ 75 (281)
++.++..|..++..|+|.+|+..|++++...|.+ ..+.+.+|.++++.|+|.+|+..+++.++..|++ ..++|.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 4678999999999999999999999999998876 6889999999999999999999999999999875 569999
Q ss_pred HHHHHHHhhc-----------HHHHHHHHHHhhhcCCCChhH---HHHHHHHHHHHHhh
Q 023550 76 KATACMKLEE-----------YETAKVALEKGASLAPGDSRF---TNLIKECEERIAEE 120 (281)
Q Consensus 76 ~g~~~~~~g~-----------~~~A~~~~~~a~~l~p~~~~~---~~~l~~~~~~l~~~ 120 (281)
+|.+++.+.+ ..+|+..|+..+...|+.... ...+..+...+...
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~ 143 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEH 143 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHH
Confidence 9999887643 458999999999999998754 45566666666554
No 92
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.99 E-value=2e-09 Score=73.64 Aligned_cols=67 Identities=19% Similarity=0.203 Sum_probs=48.4
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 023550 12 AFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (281)
Q Consensus 12 ~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~ 78 (281)
++..|+|++|+..|.+++..+|++..+++.+|.||++.|++++|...+++++..+|+++.++..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3566777777777777777777777777777777777777777777777777777777666655553
No 93
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.98 E-value=6e-09 Score=82.58 Aligned_cols=92 Identities=11% Similarity=0.103 Sum_probs=86.9
Q ss_pred HhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHH
Q 023550 29 IEIS-PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT 107 (281)
Q Consensus 29 l~~~-p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~ 107 (281)
...+ ++.-+..+.+|..++..|++++|...|+.++.++|.+...|+.+|.++..+|+|++|+.+|.++..++|+++...
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 3456 777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 023550 108 NLIKECEERIAEE 120 (281)
Q Consensus 108 ~~l~~~~~~l~~~ 120 (281)
...+.|.-.+++.
T Consensus 107 ~~ag~c~L~lG~~ 119 (157)
T PRK15363 107 WAAAECYLACDNV 119 (157)
T ss_pred HHHHHHHHHcCCH
Confidence 9999999988876
No 94
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.98 E-value=9.2e-09 Score=106.87 Aligned_cols=110 Identities=16% Similarity=0.221 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHH--------------HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE--------------LFADRAQASIKLQNFTEAVADANRAIELEPSM 69 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~--------------~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 69 (281)
.+...|..++..|++++|+.+|+++++.+|++.. ....+|.++.+.|++++|+..|++++.++|.+
T Consensus 305 a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~ 384 (1157)
T PRK11447 305 ALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTD 384 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4566677777777777777777777777666532 12344666677777777777777777777778
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHH
Q 023550 70 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (281)
Q Consensus 70 ~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (281)
..+++.+|.++...|++++|+.+|+++++++|++......+..+
T Consensus 385 ~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l 428 (1157)
T PRK11447 385 SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANL 428 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 88899999999999999999999999999999988766555444
No 95
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.98 E-value=2.9e-08 Score=85.47 Aligned_cols=119 Identities=18% Similarity=0.137 Sum_probs=100.2
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHH---HHHHHHHHHccCHHHHHHHHHHHHHcCCCc---HHHHHH
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELF---ADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR 75 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~---~~~a~~~~~l~~~~~A~~~~~~al~l~p~~---~~a~~~ 75 (281)
++.++..|..++..|+|++|+..|++++...|....+. +.+|.+|+++++|++|+..+++.+++.|++ ..++|.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 35678999999999999999999999999999986554 889999999999999999999999999876 668999
Q ss_pred HHHHHHHhhc------------------HHHHHHHHHHhhhcCCCChh---HHHHHHHHHHHHHhh
Q 023550 76 KATACMKLEE------------------YETAKVALEKGASLAPGDSR---FTNLIKECEERIAEE 120 (281)
Q Consensus 76 ~g~~~~~~g~------------------~~~A~~~~~~a~~l~p~~~~---~~~~l~~~~~~l~~~ 120 (281)
+|.+++.+++ -.+|+..|++.++..|+... +...+..++.+|...
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~ 177 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKY 177 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHH
Confidence 9998766541 35788999999999998764 456666676666655
No 96
>PLN02789 farnesyltranstransferase
Probab=98.97 E-value=8.4e-09 Score=92.22 Aligned_cols=109 Identities=16% Similarity=0.058 Sum_probs=99.6
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcH--HH
Q 023550 12 AFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY--ET 88 (281)
Q Consensus 12 ~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~-~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~--~~ 88 (281)
+...+.+++|+..++++|..+|.+..+|..|+.++..+| ++++++..+++++..+|.+..+|+.++.++..+|+. ++
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence 445778999999999999999999999999999999999 689999999999999999999999999999999974 78
Q ss_pred HHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 89 AKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 89 A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
++.++.++++.+|++..+|..++.+...++..
T Consensus 127 el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~ 158 (320)
T PLN02789 127 ELEFTRKILSLDAKNYHAWSHRQWVLRTLGGW 158 (320)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhhhH
Confidence 89999999999999999988888877776543
No 97
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.97 E-value=1.1e-08 Score=102.08 Aligned_cols=114 Identities=16% Similarity=0.186 Sum_probs=76.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhh
Q 023550 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (281)
Q Consensus 5 ~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g 84 (281)
+...|..+...|++++|+..|.+++..+|+++.++.++|.++...|+ .+|+..+++++.+.|+++..+..+|.+++.+|
T Consensus 773 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 851 (899)
T TIGR02917 773 RTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKG 851 (899)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 44556666666666666666666666666666666666666666666 66666666666666666666667777777777
Q ss_pred cHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHh
Q 023550 85 EYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (281)
Q Consensus 85 ~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (281)
++++|+..|+++++.+|.+..+...+..+....++
T Consensus 852 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 886 (899)
T TIGR02917 852 EADRALPLLRKAVNIAPEAAAIRYHLALALLATGR 886 (899)
T ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Confidence 77777777777777777766666666665544433
No 98
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.96 E-value=1e-08 Score=106.48 Aligned_cols=109 Identities=16% Similarity=0.199 Sum_probs=66.9
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHH--------
Q 023550 7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT-------- 78 (281)
Q Consensus 7 ~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~-------- 78 (281)
..|..++..|++++|+..|.+++..+|++..++..+|.++...|++++|++.|+++++++|.+..++..++.
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHH
Confidence 345666666666666666666666666666666666666666666666666666666666665554443332
Q ss_pred ----------------------------------HHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHH
Q 023550 79 ----------------------------------ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE 115 (281)
Q Consensus 79 ----------------------------------~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 115 (281)
++...|++++|+.+|+++++++|++..+...+..+..
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~ 506 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLR 506 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 2334566666666666666666666655555544443
No 99
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.96 E-value=5.5e-09 Score=72.47 Aligned_cols=65 Identities=29% Similarity=0.495 Sum_probs=34.8
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHH
Q 023550 10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYW 74 (281)
Q Consensus 10 ~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~ 74 (281)
..++..++|++|+..+++++..+|+++.++..+|.++..+|+|.+|++++++++..+|++..+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555544433
No 100
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.95 E-value=3.7e-09 Score=73.38 Aligned_cols=70 Identities=27% Similarity=0.431 Sum_probs=65.1
Q ss_pred HHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHH
Q 023550 43 AQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112 (281)
Q Consensus 43 a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 112 (281)
..+|+..++|++|+..+++++.++|.+...++.+|.+++.+|+|.+|..+|+++++.+|++........+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 5678999999999999999999999999999999999999999999999999999999998877666554
No 101
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.94 E-value=2e-08 Score=100.23 Aligned_cols=109 Identities=17% Similarity=0.073 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
.+...|..+...|++++|+..|++++...|.+..++..+|.++...|++++|++.+++++.++|++..+++.+|.++..+
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~ 440 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDL 440 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHhhhcCCCChhHHHHHHH
Q 023550 84 EEYETAKVALEKGASLAPGDSRFTNLIKE 112 (281)
Q Consensus 84 g~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 112 (281)
|+|++|...++++++..|+++.+...-..
T Consensus 441 ~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~ 469 (765)
T PRK10049 441 QEWRQMDVLTDDVVAREPQDPGVQRLARA 469 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999999999866554433
No 102
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.94 E-value=3.1e-08 Score=84.79 Aligned_cols=109 Identities=16% Similarity=0.132 Sum_probs=99.6
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---HHHHHHH
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRK 76 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~---~~a~~~~ 76 (281)
+.+++.|..++..|+|.+|...|..-++..|++ +.+++-+|.+++.+|+|.+|...|..+++..|+. +++++.+
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 457999999999999999999999999999987 6889999999999999999999999999988765 7889999
Q ss_pred HHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHH
Q 023550 77 ATACMKLEEYETAKVALEKGASLAPGDSRFTNLIK 111 (281)
Q Consensus 77 g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~ 111 (281)
|.+...+|+.++|...|+++.+..|+.+....-..
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~ 256 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKV 256 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 99999999999999999999999999876654433
No 103
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.93 E-value=1.9e-08 Score=92.04 Aligned_cols=114 Identities=14% Similarity=0.179 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc-----HHHHHHHHHH
Q 023550 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM-----SKAYWRKATA 79 (281)
Q Consensus 5 ~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~-----~~a~~~~g~~ 79 (281)
+...|..++..|+|++|+..|.+++..+|.+..++..++.++.+.|++++|++.+++++..+|.+ ...++.+|.+
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 189 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ 189 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 44556667777777777777777776666666666666666666677777766666666665543 2234456666
Q ss_pred HHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHH
Q 023550 80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (281)
Q Consensus 80 ~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (281)
+...|++++|...|+++++.+|++......++.+....+
T Consensus 190 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 228 (389)
T PRK11788 190 ALARGDLDAARALLKKALAADPQCVRASILLGDLALAQG 228 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCC
Confidence 666666666666666666666665555555555544443
No 104
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.93 E-value=2.4e-08 Score=91.32 Aligned_cols=98 Identities=15% Similarity=0.192 Sum_probs=61.3
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhc
Q 023550 7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM-SKAYWRKATACMKLEE 85 (281)
Q Consensus 7 ~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~-~~a~~~~g~~~~~~g~ 85 (281)
..|..++..|++++|+..|.+++..+|++..+++.+|.++.+.|++++|+..+++++..+|.+ ..++..++.+|...|+
T Consensus 185 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 185 ELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC
Confidence 445555666666666666666666666666666666666666666666666666666666554 3445556666666666
Q ss_pred HHHHHHHHHHhhhcCCCCh
Q 023550 86 YETAKVALEKGASLAPGDS 104 (281)
Q Consensus 86 ~~~A~~~~~~a~~l~p~~~ 104 (281)
+++|...+++++..+|+..
T Consensus 265 ~~~A~~~l~~~~~~~p~~~ 283 (389)
T PRK11788 265 EAEGLEFLRRALEEYPGAD 283 (389)
T ss_pred HHHHHHHHHHHHHhCCCch
Confidence 6666666666666666543
No 105
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.92 E-value=1.1e-08 Score=97.44 Aligned_cols=102 Identities=15% Similarity=0.158 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHH--HHHHHHHcCCCcHHHHHHHHHHH
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVA--DANRAIELEPSMSKAYWRKATAC 80 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~--~~~~al~l~p~~~~a~~~~g~~~ 80 (281)
..++..|..+...|++.+|.+.|..|+..+|+++.....+|.++...|+-..|.. .+..+++++|.+.++||.+|.++
T Consensus 685 ~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~ 764 (799)
T KOG4162|consen 685 SVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVF 764 (799)
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 4578889999999999999999999999999999999999999999998777777 89999999999999999999999
Q ss_pred HHhhcHHHHHHHHHHhhhcCCCCh
Q 023550 81 MKLEEYETAKVALEKGASLAPGDS 104 (281)
Q Consensus 81 ~~~g~~~~A~~~~~~a~~l~p~~~ 104 (281)
..+|+.++|..||+-|+.+++.++
T Consensus 765 k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 765 KKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHccchHHHHHHHHHHHhhccCCC
Confidence 999999999999999999998876
No 106
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.89 E-value=1.8e-08 Score=93.34 Aligned_cols=108 Identities=17% Similarity=0.173 Sum_probs=74.0
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-----------------
Q 023550 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS----------------- 68 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~----------------- 68 (281)
|..|..+++.|+..+|.-+|..+++.+|.++++|..+|.++...++-..|+..+++|++++|+
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 455666666666666666666666666666666666666666666666666666666655543
Q ss_pred ------------------------------------------------------------cHHHHHHHHHHHHHhhcHHH
Q 023550 69 ------------------------------------------------------------MSKAYWRKATACMKLEEYET 88 (281)
Q Consensus 69 ------------------------------------------------------------~~~a~~~~g~~~~~~g~~~~ 88 (281)
+++++..+|++|+..|+|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 34556667888888888999
Q ss_pred HHHHHHHhhhcCCCChhHHHHHHHH
Q 023550 89 AKVALEKGASLAPGDSRFTNLIKEC 113 (281)
Q Consensus 89 A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (281)
|+.||+.|+..+|+|..+|..++..
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAt 473 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGAT 473 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHH
Confidence 9999999999999888888777665
No 107
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.8e-08 Score=93.07 Aligned_cols=112 Identities=19% Similarity=0.216 Sum_probs=98.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC----CC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 023550 5 LEKKAKEAFIDDYFELAYDLYSQAIEIS----PN---SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77 (281)
Q Consensus 5 ~~~~g~~~~~~~~y~~Al~~y~~al~~~----p~---~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g 77 (281)
+...|..+|..+.|.+|+.+|..++..- +. -...+.++|.++.++++|++|+..++++|.+.|.++..+...|
T Consensus 417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig 496 (611)
T KOG1173|consen 417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIG 496 (611)
T ss_pred hhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHH
Confidence 3456888999999999999999999432 11 2456899999999999999999999999999999999999999
Q ss_pred HHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHH
Q 023550 78 TACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (281)
Q Consensus 78 ~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 116 (281)
.+|..+|+++.|+..|.+++.+.|++......+..+-..
T Consensus 497 ~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 497 YIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 999999999999999999999999998777777766443
No 108
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.88 E-value=7e-09 Score=70.90 Aligned_cols=67 Identities=21% Similarity=0.354 Sum_probs=61.4
Q ss_pred HHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHH
Q 023550 46 SIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112 (281)
Q Consensus 46 ~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 112 (281)
++..|+|++|+..|++++..+|++..+++.+|.+|+..|++++|...+.+++..+|+++.++..+++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 4678999999999999999999999999999999999999999999999999999998877776654
No 109
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.88 E-value=3.2e-08 Score=78.40 Aligned_cols=92 Identities=23% Similarity=0.177 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---HHHHHHHH
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRKA 77 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~---~~a~~~~g 77 (281)
..+..+...+..+++..+...+...+..+|+. ..+.+.+|.+++..|+|++|+..|+.++...++. ..+.+++|
T Consensus 13 ~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 13 ALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 34445555555555555555555555555555 3444555555555555555555555555554332 33555555
Q ss_pred HHHHHhhcHHHHHHHHHH
Q 023550 78 TACMKLEEYETAKVALEK 95 (281)
Q Consensus 78 ~~~~~~g~~~~A~~~~~~ 95 (281)
.+++..|+|++|+..++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHcCCHHHHHHHHHh
Confidence 555555555555555544
No 110
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.87 E-value=7.9e-08 Score=73.49 Aligned_cols=97 Identities=21% Similarity=0.048 Sum_probs=87.8
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC---cHHHHHH
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWR 75 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~---~~~a~~~ 75 (281)
+..+|+.|..+-..|+.++|+.+|++++...... ..+++++|.++..+|++++|+..++.++...|+ +......
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 3568999999999999999999999999975444 578999999999999999999999999999888 7788888
Q ss_pred HHHHHHHhhcHHHHHHHHHHhhh
Q 023550 76 KATACMKLEEYETAKVALEKGAS 98 (281)
Q Consensus 76 ~g~~~~~~g~~~~A~~~~~~a~~ 98 (281)
++.+++.+|++++|+..+-.++.
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999987764
No 111
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.86 E-value=1.3e-09 Score=95.24 Aligned_cols=113 Identities=32% Similarity=0.391 Sum_probs=101.8
Q ss_pred ChhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 023550 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (281)
Q Consensus 1 ma~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 80 (281)
||.....++..++.+|.++.|+++|+.++.++|....+|..|+.+++++++...|+.+|..|+.++|+....|-.+|.+.
T Consensus 113 qa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~ 192 (377)
T KOG1308|consen 113 QANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAE 192 (377)
T ss_pred HHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHH
Confidence 35567778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHH
Q 023550 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECE 114 (281)
Q Consensus 81 ~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (281)
..+|+|++|..+|..+.+++-+ ...-.|+..+.
T Consensus 193 rllg~~e~aa~dl~~a~kld~d-E~~~a~lKeV~ 225 (377)
T KOG1308|consen 193 RLLGNWEEAAHDLALACKLDYD-EANSATLKEVF 225 (377)
T ss_pred HHhhchHHHHHHHHHHHhcccc-HHHHHHHHHhc
Confidence 9999999999999999998864 33444544443
No 112
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.85 E-value=5.2e-08 Score=78.43 Aligned_cols=98 Identities=19% Similarity=0.322 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhc--
Q 023550 18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQN----------FTEAVADANRAIELEPSMSKAYWRKATACMKLEE-- 85 (281)
Q Consensus 18 y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~----------~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~-- 85 (281)
|+.|.+.+......+|.+++.+++-|.+++.+.+ +++|+.-|+.||.++|+..++++.+|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 6789999999999999999999999999988843 6778889999999999999999999999998864
Q ss_pred ---------HHHHHHHHHHhhhcCCCChhHHHHHHHHHH
Q 023550 86 ---------YETAKVALEKGASLAPGDSRFTNLIKECEE 115 (281)
Q Consensus 86 ---------~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 115 (281)
|++|..+|++|...+|++..++.-+..+..
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK 125 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 889999999999999999988888877654
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.85 E-value=4.1e-08 Score=83.14 Aligned_cols=115 Identities=21% Similarity=0.254 Sum_probs=104.2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhc
Q 023550 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE 85 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~ 85 (281)
...+..++..|+-+.++....+++..+|.+..++...|..++..|+|.+|+..++++..+.|+++++|..+|.+|.++|+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence 45677888889989999999999889999999988899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 86 YETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 86 ~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
++.|...|.+++++.|+++.+...+......-++.
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~ 184 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDL 184 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCH
Confidence 99999999999999999999888877766544443
No 114
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=1.4e-07 Score=79.54 Aligned_cols=115 Identities=19% Similarity=0.196 Sum_probs=72.2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH----------------------------------HHHHHHHHHHHHccC
Q 023550 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSA----------------------------------ELFADRAQASIKLQN 51 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~----------------------------------~~~~~~a~~~~~l~~ 51 (281)
...|..+-..|+|++|+++|+..+..+|.|. ++|..+|..|+.+|+
T Consensus 90 ~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~ 169 (289)
T KOG3060|consen 90 KLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGD 169 (289)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhH
Confidence 4567778888889999999998888888774 445555555555555
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhh---cHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 52 FTEAVADANRAIELEPSMSKAYWRKATACMKLE---EYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 52 ~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g---~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
|+.|.-+++..+-+.|.++..+.++|..+|-.| ++..|..+|.++++++|.+...+..+-.|...+.+.
T Consensus 170 f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~ 241 (289)
T KOG3060|consen 170 FEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQI 241 (289)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555544 344555555555555555555555555555555544
No 115
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.84 E-value=2.2e-08 Score=87.88 Aligned_cols=115 Identities=20% Similarity=0.245 Sum_probs=94.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023550 6 EKKAKEAFIDDYFELAYDLYSQAIEIS--PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~--p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
......++..++++++...+.++.... +.++.+|..+|.++.+.|++++|+.+++++++++|++..++..++..+...
T Consensus 114 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~ 193 (280)
T PF13429_consen 114 LSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDM 193 (280)
T ss_dssp ----H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC
Confidence 344566788999999999999977654 678899999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 84 g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
|+++++...+.......|.++.++..++.+...+++.
T Consensus 194 ~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~ 230 (280)
T PF13429_consen 194 GDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRY 230 (280)
T ss_dssp CHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-H
T ss_pred CChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccc
Confidence 9999999999999888899998888888888888775
No 116
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.82 E-value=3.9e-08 Score=89.46 Aligned_cols=82 Identities=21% Similarity=0.222 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
..++.+|.+++..|+|++|+..+++++.++|+++.+|+++|.+|+.+|+|++|+..|+++++++|++..++..++.|...
T Consensus 37 ~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 37 ELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999998888777
Q ss_pred hh
Q 023550 83 LE 84 (281)
Q Consensus 83 ~g 84 (281)
+.
T Consensus 117 l~ 118 (356)
T PLN03088 117 IA 118 (356)
T ss_pred HH
Confidence 64
No 117
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.80 E-value=2.4e-08 Score=91.22 Aligned_cols=63 Identities=17% Similarity=0.173 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHHc
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAEL---FADRAQASIKLQNFTEAVADANRAIEL 65 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~---~~~~a~~~~~l~~~~~A~~~~~~al~l 65 (281)
..+++.|..++..|+|++|+..|+++|.++|++..+ |+++|.||.++|++++|++++++|+++
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345556666666666666666666666666665533 566666666666666666666666655
No 118
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.78 E-value=7.3e-08 Score=90.37 Aligned_cols=117 Identities=10% Similarity=0.073 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
.+|.++..+|..++|...+......|+..|.+++.+...|..+..+|+-++|....+.+++.++....+|.-+|..+..-
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 84 g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
++|++|+.||+.|+.++|+|..+++-++-++.++++.
T Consensus 89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~ 125 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY 125 (700)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999888888776
No 119
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.78 E-value=1.6e-07 Score=85.76 Aligned_cols=109 Identities=21% Similarity=0.136 Sum_probs=96.4
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcH
Q 023550 7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY 86 (281)
Q Consensus 7 ~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~ 86 (281)
..+..++..+++.+|++.+.+++.++|+...+.+++|++|++.|++.+|+..+++.+..+|+++..|..+|++|..+|+-
T Consensus 345 ~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 345 LAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCch
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHhhhcCCCChhHHHHHHHHHH
Q 023550 87 ETAKVALEKGASLAPGDSRFTNLIKECEE 115 (281)
Q Consensus 87 ~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 115 (281)
.+|...+.+...+..+-..+...+.++..
T Consensus 425 ~~a~~A~AE~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 425 AEALLARAEGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 88888888887777665555444444443
No 120
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.76 E-value=7e-08 Score=78.29 Aligned_cols=111 Identities=14% Similarity=0.096 Sum_probs=95.9
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHH
Q 023550 8 KAKEAFIDDYFELAYDLYSQAIEISPNS--AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMK 82 (281)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~al~~~p~~--~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~---~~~a~~~~g~~~~~ 82 (281)
+.+.+|-.++|..+...+...+..+..+ ...+++.|.++..+|++++|+..+++++.+.++ .+.+++.+|.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~ 84 (168)
T CHL00033 5 QRNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS 84 (168)
T ss_pred cccccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH
Confidence 4567788888999999998877776666 677899999999999999999999999998765 35689999999999
Q ss_pred hhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHH
Q 023550 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (281)
+|++++|+.+|++++.++|.....+..++.+...++
T Consensus 85 ~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 85 NGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 999999999999999999998887777777776444
No 121
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.76 E-value=1.3e-07 Score=86.52 Aligned_cols=69 Identities=23% Similarity=0.215 Sum_probs=66.4
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHH---HHHHHHHHHHhhcHHHHHHHHHHhhhc
Q 023550 31 ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKA---YWRKATACMKLEEYETAKVALEKGASL 99 (281)
Q Consensus 31 ~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a---~~~~g~~~~~~g~~~~A~~~~~~a~~l 99 (281)
.+|+++.+++++|.+|+.+|+|++|+..|+++++++|++..+ ||++|.+|..+|++++|+.+|++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 579999999999999999999999999999999999999865 999999999999999999999999997
No 122
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=2.9e-08 Score=89.85 Aligned_cols=118 Identities=18% Similarity=0.196 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
.++-++|+..|..|+|++|.+.|.++|..+..-.+++++.|..+..+|+.++|+++|-+.-.+--++..+++.++.+|..
T Consensus 491 ~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~ 570 (840)
T KOG2003|consen 491 AALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYEL 570 (840)
T ss_pred HHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 35567888899999999999999999988877788899999999999999999998888777777788889999999999
Q ss_pred hhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
+.+...|++++.++..+-|+++.+..-++.+..+-++.
T Consensus 571 led~aqaie~~~q~~slip~dp~ilskl~dlydqegdk 608 (840)
T KOG2003|consen 571 LEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDK 608 (840)
T ss_pred hhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccch
Confidence 99999999999999999888888777777776655443
No 123
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.74 E-value=2.7e-07 Score=87.71 Aligned_cols=100 Identities=23% Similarity=0.187 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhcC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--------------------------------
Q 023550 4 DLEKKAKEAFIDDY---FELAYDLYSQAIEISPNSAELFADRAQASIK-------------------------------- 48 (281)
Q Consensus 4 ~~~~~g~~~~~~~~---y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~-------------------------------- 48 (281)
.++.+|..++..++ +..|+.+|++|++++|+++.++..++.+|..
T Consensus 341 ~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~ 420 (517)
T PRK10153 341 TLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLP 420 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCCh
Confidence 46677777766544 7788888888888888886666555554433
Q ss_pred ------------ccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCCh
Q 023550 49 ------------LQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104 (281)
Q Consensus 49 ------------l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~ 104 (281)
.|++++|...+++|+.++| +..+|..+|.++...|++++|...|++|++++|.++
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 3555555555555555555 345555555555555555555555555555555554
No 124
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.73 E-value=4.3e-07 Score=79.82 Aligned_cols=104 Identities=18% Similarity=0.188 Sum_probs=98.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhh
Q 023550 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (281)
Q Consensus 5 ~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g 84 (281)
+..+...++-.||+..|+...+..|+..|=++.++..||.||+..|+...|+.+.+.+-++..++.+.+|.++..+|..|
T Consensus 158 l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vg 237 (504)
T KOG0624|consen 158 LVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVG 237 (504)
T ss_pred HHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhh
Confidence 45677788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhhcCCCChhHHH
Q 023550 85 EYETAKVALEKGASLAPGDSRFTN 108 (281)
Q Consensus 85 ~~~~A~~~~~~a~~l~p~~~~~~~ 108 (281)
+.+.++...+.|++++|+......
T Consensus 238 d~~~sL~~iRECLKldpdHK~Cf~ 261 (504)
T KOG0624|consen 238 DAENSLKEIRECLKLDPDHKLCFP 261 (504)
T ss_pred hHHHHHHHHHHHHccCcchhhHHH
Confidence 999999999999999999876433
No 125
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.73 E-value=1.9e-07 Score=93.06 Aligned_cols=112 Identities=11% Similarity=-0.039 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (281)
++..+.++...++.|+|+.|+..|.++++.+|+++.....++.++..+|++++|+..+++++.-.+.........|.++.
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~ 113 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYR 113 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 34567889999999999999999999999999985332255566666666666666666666222223333333355666
Q ss_pred HhhcHHHHHHHHHHhhhcCCCChhHHHHHHHH
Q 023550 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (281)
Q Consensus 82 ~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (281)
.+|+|++|+..|+++++.+|+++.+...+..+
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~ 145 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMT 145 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 66666666666666666666666555444333
No 126
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.70 E-value=3.2e-07 Score=64.53 Aligned_cols=83 Identities=25% Similarity=0.354 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 023550 38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (281)
Q Consensus 38 ~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (281)
.++.+|.++...|++++|+..+.+++...|.+..+++.+|.++...|++++|..+|++++...|.+......++.+....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999887777777776666
Q ss_pred Hhh
Q 023550 118 AEE 120 (281)
Q Consensus 118 ~~~ 120 (281)
++.
T Consensus 82 ~~~ 84 (100)
T cd00189 82 GKY 84 (100)
T ss_pred HhH
Confidence 553
No 127
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.68 E-value=3.1e-07 Score=83.99 Aligned_cols=89 Identities=24% Similarity=0.334 Sum_probs=47.2
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHH
Q 023550 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE 87 (281)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~ 87 (281)
.+..++..++..+|++.+.+++..+|.+..++...|..++..++++.|+..+++++.+.|.+.+.|+.++.+|..+|+|+
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e 285 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFE 285 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHH
Confidence 34444444555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHh
Q 023550 88 TAKVALEKG 96 (281)
Q Consensus 88 ~A~~~~~~a 96 (281)
.|+..+..+
T Consensus 286 ~ALlaLNs~ 294 (395)
T PF09295_consen 286 NALLALNSC 294 (395)
T ss_pred HHHHHHhcC
Confidence 555544433
No 128
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=8.2e-08 Score=85.95 Aligned_cols=119 Identities=18% Similarity=0.250 Sum_probs=105.1
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH------------HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA------------ELFADRAQASIKLQNFTEAVADANRAIELEPSM 69 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~------------~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 69 (281)
+++++-+|.+++-..+-+.|+.+|.++|.++|+.. ..+..+|+-.++.|+|..|.+.|..+|.++|.+
T Consensus 203 ~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n 282 (486)
T KOG0550|consen 203 AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN 282 (486)
T ss_pred hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc
Confidence 45677889999999999999999999999999873 446778999999999999999999999999975
Q ss_pred ----HHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 70 ----SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 70 ----~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
+..|+++|.+..++|+..+|+..+..++.+++.--......+.|+..++.-
T Consensus 283 ~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~ 337 (486)
T KOG0550|consen 283 KKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKW 337 (486)
T ss_pred cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 778999999999999999999999999999998777777778888777765
No 129
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=3e-07 Score=82.47 Aligned_cols=95 Identities=23% Similarity=0.224 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhh
Q 023550 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (281)
Q Consensus 5 ~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g 84 (281)
+.+.+.++.+.++|.+|+...+++|..+|+|.-++++||.+++.+++|+.|+.+|+++++++|.|..+...+..+..+..
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~ 339 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIR 339 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999888888887777
Q ss_pred cHHHH-HHHHHHhhhc
Q 023550 85 EYETA-KVALEKGASL 99 (281)
Q Consensus 85 ~~~~A-~~~~~~a~~l 99 (281)
++.+. ...|.+.+..
T Consensus 340 ~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 340 EYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 66655 4455555443
No 130
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.68 E-value=6.9e-08 Score=91.66 Aligned_cols=106 Identities=20% Similarity=0.188 Sum_probs=96.2
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (281)
+.+.+..|...+.+++|.+|.++++..+.++|-....|+++|.|++++++++.|..+|.+++.++|++..+|-+++-+|.
T Consensus 485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi 564 (777)
T KOG1128|consen 485 ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYI 564 (777)
T ss_pred HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHH
Confidence 34445556667788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhhcCCCChhHH
Q 023550 82 KLEEYETAKVALEKGASLAPGDSRFT 107 (281)
Q Consensus 82 ~~g~~~~A~~~~~~a~~l~p~~~~~~ 107 (281)
.+|+-.+|..++++|++.+-.+-.+|
T Consensus 565 ~~~~k~ra~~~l~EAlKcn~~~w~iW 590 (777)
T KOG1128|consen 565 RLKKKKRAFRKLKEALKCNYQHWQIW 590 (777)
T ss_pred HHhhhHHHHHHHHHHhhcCCCCCeee
Confidence 99999999999999999986655433
No 131
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.67 E-value=1.1e-07 Score=78.76 Aligned_cols=114 Identities=22% Similarity=0.135 Sum_probs=103.3
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (281)
|.-++.+|..+-..|-+.-|.--|++++.+.|+-++++..+|..+...|+|+.|.+.|+..++++|.+--+++++|++++
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 44577888888888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHH
Q 023550 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEE 115 (281)
Q Consensus 82 ~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 115 (281)
.-|+|.-|.+.+.+-...+|+|+--..|+=-.+.
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~ 178 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQ 178 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 9999999999999999999999865555544433
No 132
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.65 E-value=3.4e-07 Score=89.35 Aligned_cols=113 Identities=14% Similarity=0.095 Sum_probs=82.2
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS-AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~-~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 80 (281)
|+.++..|..+..+|+|++|-.+|.+++..++++ .-.++.+|+.|++.|+++.|..+|++++...|++.+....+|..|
T Consensus 307 aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Ly 386 (1018)
T KOG2002|consen 307 AESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLY 386 (1018)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHH
Confidence 5567777777777777777777777777777776 556677777777777777777777777777777777777777777
Q ss_pred HHhh----cHHHHHHHHHHhhhcCCCChhHHHHHHHHH
Q 023550 81 MKLE----EYETAKVALEKGASLAPGDSRFTNLIKECE 114 (281)
Q Consensus 81 ~~~g----~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (281)
...+ .-+.|...+.++++..|.|...+..++.+.
T Consensus 387 a~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 387 AHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL 424 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 7765 556677777777777777766655555543
No 133
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.63 E-value=1.4e-06 Score=80.86 Aligned_cols=117 Identities=15% Similarity=0.107 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHH
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS-KAYWRKATACMK 82 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~-~a~~~~g~~~~~ 82 (281)
....+|...+..|+|+.|.+.+.++.+..|+....+...|.++..+|+++.|...+.++.+..|++. .+....+..+..
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~ 165 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLA 165 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH
Confidence 3456777788888888888888888888777777777788888888888888888888887777764 355556888888
Q ss_pred hhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
.|+++.|...+++..+.+|+++.+...+..+....++-
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~ 203 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAW 203 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhH
Confidence 88888888888888888888887777777777666654
No 134
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.63 E-value=2.1e-07 Score=80.38 Aligned_cols=84 Identities=21% Similarity=0.199 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
-+-++|-+|.+.|.|+.|++-...+|.++|+...+|.++|.+|+.+|+|++|++.|+++|.++|++....-.+..+-..+
T Consensus 117 yycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 117 YYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKL 196 (304)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence 35678999999999999999999999999999999999999999999999999999999999999998888888888887
Q ss_pred hcHH
Q 023550 84 EEYE 87 (281)
Q Consensus 84 g~~~ 87 (281)
++..
T Consensus 197 ~e~~ 200 (304)
T KOG0553|consen 197 NEPK 200 (304)
T ss_pred cCCC
Confidence 7665
No 135
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.62 E-value=4.1e-07 Score=82.24 Aligned_cols=97 Identities=16% Similarity=0.137 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHH
Q 023550 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM----SKAYWRKATAC 80 (281)
Q Consensus 5 ~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~----~~a~~~~g~~~ 80 (281)
+...|..+...|++++|+..+++++..+|++..++..+|.+++..|++++|+..+++++...|.. ...++.+|.++
T Consensus 117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 117 LGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 34678889999999999999999999999999999999999999999999999999999987643 23567899999
Q ss_pred HHhhcHHHHHHHHHHhhhcCC
Q 023550 81 MKLEEYETAKVALEKGASLAP 101 (281)
Q Consensus 81 ~~~g~~~~A~~~~~~a~~l~p 101 (281)
..+|++++|+..|++++...|
T Consensus 197 ~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 197 LERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHCCCHHHHHHHHHHHhcccc
Confidence 999999999999999977666
No 136
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.62 E-value=6e-07 Score=89.47 Aligned_cols=113 Identities=14% Similarity=0.125 Sum_probs=93.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhh
Q 023550 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (281)
Q Consensus 5 ~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g 84 (281)
+...|..+...|+|++|+++|+++++.+|+++.++..++.++...+++++|++.+++++..+|.+... ..++.++...+
T Consensus 105 llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~ 183 (822)
T PRK14574 105 LASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATD 183 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcc
Confidence 33447788889999999999999999999999999999999999999999999999999999986544 55566666677
Q ss_pred cHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHH
Q 023550 85 EYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (281)
Q Consensus 85 ~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (281)
++.+|+..|+++++.+|++..+...+-.+...++
T Consensus 184 ~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~ 217 (822)
T PRK14574 184 RNYDALQASSEAVRLAPTSEEVLKNHLEILQRNR 217 (822)
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 8877999999999999999887666555544443
No 137
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.61 E-value=1.7e-06 Score=68.51 Aligned_cols=93 Identities=18% Similarity=0.167 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 80 (281)
..+..|..++..|+|++|+..|..++...++. ..+.+++|.+++..|+|++|+..++. +.-.+..+.++..+|.+|
T Consensus 50 A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~ 128 (145)
T PF09976_consen 50 AALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIY 128 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHH
Confidence 46778999999999999999999999987665 45788899999999999999999966 344455677899999999
Q ss_pred HHhhcHHHHHHHHHHhh
Q 023550 81 MKLEEYETAKVALEKGA 97 (281)
Q Consensus 81 ~~~g~~~~A~~~~~~a~ 97 (281)
...|++++|+..|++++
T Consensus 129 ~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 129 LAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHCCCHHHHHHHHHHhC
Confidence 99999999999999874
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=2.2e-06 Score=72.50 Aligned_cols=86 Identities=19% Similarity=0.131 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ---NFTEAVADANRAIELEPSMSKAYWRKATA 79 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~---~~~~A~~~~~~al~l~p~~~~a~~~~g~~ 79 (281)
++|...+..|+..|+|++|..+|.+.+-.+|.++.++.++|.+++-+| +++-|..+|.++++++|.+..++|.+..|
T Consensus 155 EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 155 EAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999876 78899999999999999999999988887
Q ss_pred HHHhhcHHH
Q 023550 80 CMKLEEYET 88 (281)
Q Consensus 80 ~~~~g~~~~ 88 (281)
..++-+...
T Consensus 235 ~~~la~~sk 243 (289)
T KOG3060|consen 235 GSALAQISK 243 (289)
T ss_pred HHHHHHHhH
Confidence 766644433
No 139
>PRK11906 transcriptional regulator; Provisional
Probab=98.58 E-value=1.2e-06 Score=80.38 Aligned_cols=116 Identities=9% Similarity=0.003 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHhc---CHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHcCCC
Q 023550 4 DLEKKAKEAFIDD---YFELAYDLYSQAI---EISPNSAELFADRAQASIKL---------QNFTEAVADANRAIELEPS 68 (281)
Q Consensus 4 ~~~~~g~~~~~~~---~y~~Al~~y~~al---~~~p~~~~~~~~~a~~~~~l---------~~~~~A~~~~~~al~l~p~ 68 (281)
.++.+|...+.++ .-+.|+.+|.+++ .++|..+.+|..+|.||... ....+|.+.+++|++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 4566777776544 3567888999999 88999999999999998876 2466788899999999999
Q ss_pred cHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHh
Q 023550 69 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (281)
Q Consensus 69 ~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (281)
|+.+++.+|.++...++++.|...|++++.++|+...++.+.+.+....++
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~ 387 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK 387 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999887777775444333
No 140
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.57 E-value=1.5e-07 Score=82.17 Aligned_cols=108 Identities=15% Similarity=0.254 Sum_probs=76.6
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHhhcHHHH
Q 023550 13 FIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP---SMSKAYWRKATACMKLEEYETA 89 (281)
Q Consensus 13 ~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p---~~~~a~~~~g~~~~~~g~~~~A 89 (281)
|-.++.+-|+.+|++.|.+.-.+++++.++|.|.+-.++|+-++..+.+|+...- .-+++||++|.+....|++..|
T Consensus 335 fY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA 414 (478)
T KOG1129|consen 335 FYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLA 414 (478)
T ss_pred ccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHH
Confidence 3334444444444444444444467788888888888888888888888887653 2367888888888888888888
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 90 KVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 90 ~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
..||+-++..++++.+....++.+..+-+..
T Consensus 415 ~rcfrlaL~~d~~h~ealnNLavL~~r~G~i 445 (478)
T KOG1129|consen 415 KRCFRLALTSDAQHGEALNNLAVLAARSGDI 445 (478)
T ss_pred HHHHHHHhccCcchHHHHHhHHHHHhhcCch
Confidence 8888888888888888777777776655444
No 141
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.56 E-value=4.3e-07 Score=74.00 Aligned_cols=87 Identities=16% Similarity=0.137 Sum_probs=76.4
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHH
Q 023550 33 PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNL 109 (281)
Q Consensus 33 p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~ 109 (281)
+....+++.+|.++...|++++|+..+++++.+.++. ..+++.+|.++..+|++++|+.+|.+++..+|++......
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 3456789999999999999999999999999987653 5799999999999999999999999999999999888777
Q ss_pred HHHHHHHHHh
Q 023550 110 IKECEERIAE 119 (281)
Q Consensus 110 l~~~~~~l~~ 119 (281)
++.+...+++
T Consensus 112 lg~~~~~~g~ 121 (172)
T PRK02603 112 IAVIYHKRGE 121 (172)
T ss_pred HHHHHHHcCC
Confidence 7777665544
No 142
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.55 E-value=1.1e-07 Score=66.79 Aligned_cols=65 Identities=20% Similarity=0.342 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhc
Q 023550 35 SAELFADRAQASIKLQNFTEAVADANRAIELE-------PSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (281)
Q Consensus 35 ~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~-------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l 99 (281)
-..++.++|.+|..+|+|++|+..+++++.+. +..+.+++++|.++..+|++++|+.++++++++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35678889999999999999999999888652 123668888999999999999999999988765
No 143
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.55 E-value=3.5e-07 Score=79.89 Aligned_cols=119 Identities=13% Similarity=0.001 Sum_probs=83.0
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (281)
.+.+......|.+..+...|+..|.+.++..|.+..++...|.+|..++++++|++.|+.+++++|.+.++....|..||
T Consensus 256 ~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yf 335 (478)
T KOG1129|consen 256 PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYF 335 (478)
T ss_pred hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccc
Confidence 34555566666666777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 82 ~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
.-++.+-|+.+|++.+.+.-.++++...++-|-..-++.
T Consensus 336 Y~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 336 YDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQI 374 (478)
T ss_pred cCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcch
Confidence 777777777777777777766676666666665444443
No 144
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.53 E-value=1.1e-06 Score=66.14 Aligned_cols=84 Identities=14% Similarity=0.145 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCCh---hHHHH
Q 023550 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKGASLAPGDS---RFTNL 109 (281)
Q Consensus 36 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~---~~~~~ 109 (281)
+..++.+|..+...|++++|+..+.+++..+|++ ..+++.+|.+++..|+++.|+..|++++..+|++. .+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4578999999999999999999999999999876 67999999999999999999999999999998863 34555
Q ss_pred HHHHHHHHHh
Q 023550 110 IKECEERIAE 119 (281)
Q Consensus 110 l~~~~~~l~~ 119 (281)
++.+...+++
T Consensus 82 ~~~~~~~~~~ 91 (119)
T TIGR02795 82 LGMSLQELGD 91 (119)
T ss_pred HHHHHHHhCC
Confidence 5666555444
No 145
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=1.8e-06 Score=74.85 Aligned_cols=105 Identities=16% Similarity=0.130 Sum_probs=94.7
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhh---cHHHHHHH
Q 023550 16 DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE---EYETAKVA 92 (281)
Q Consensus 16 ~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g---~~~~A~~~ 92 (281)
...+..+..++.-+..+|+|.+-|..+|.+|+.+|++..|+..|.+|+++.|++++.+..+|.+++... .-.+|...
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 346777888889999999999999999999999999999999999999999999999999999998875 35689999
Q ss_pred HHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 93 LEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 93 ~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
|++++.++|+|......++......++.
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~~ 243 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGDY 243 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccH
Confidence 9999999999999988888877666555
No 146
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.51 E-value=1.2e-06 Score=85.59 Aligned_cols=116 Identities=16% Similarity=0.166 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc-HHHHHHHHH
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM-SKAYWRKAT 78 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~-~~a~~~~g~ 78 (281)
..+...++-+|-.|+|+.+..++..++...-.. .+.++.+|.+|..+|+|++|..+|..++..++++ .-+++.+|+
T Consensus 271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQ 350 (1018)
T KOG2002|consen 271 VALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQ 350 (1018)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhH
Confidence 346677888999999999999999999876444 4559999999999999999999999999999988 889999999
Q ss_pred HHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHH
Q 023550 79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (281)
Q Consensus 79 ~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (281)
.|.+.|+++.|..+|++.++..|++......++.++...+
T Consensus 351 m~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 351 MYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA 390 (1018)
T ss_pred HHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence 9999999999999999999999999999888888877663
No 147
>PRK11906 transcriptional regulator; Provisional
Probab=98.51 E-value=2e-06 Score=78.95 Aligned_cols=91 Identities=14% Similarity=0.145 Sum_probs=86.1
Q ss_pred hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHH
Q 023550 15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALE 94 (281)
Q Consensus 15 ~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~ 94 (281)
..+-.+|+++-.+|++.+|.|+.++..+|.++...++++.|+..+++|+.++|+.+.+|+..|.+++..|+.++|..+++
T Consensus 317 ~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 317 ELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCChh
Q 023550 95 KGASLAPGDSR 105 (281)
Q Consensus 95 ~a~~l~p~~~~ 105 (281)
++++++|.-..
T Consensus 397 ~alrLsP~~~~ 407 (458)
T PRK11906 397 KSLQLEPRRRK 407 (458)
T ss_pred HHhccCchhhH
Confidence 99999997654
No 148
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.50 E-value=4.2e-06 Score=81.32 Aligned_cols=99 Identities=20% Similarity=0.183 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
..++..|..+-++|+.++|+...-.|-.++|.+.+.|...+.....+|++.+|.-+|.+||+++|.+.+..++++..|.+
T Consensus 174 ~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~ 253 (895)
T KOG2076|consen 174 IAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQK 253 (895)
T ss_pred hhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhhcCC
Q 023550 83 LEEYETAKVALEKGASLAP 101 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~l~p 101 (281)
+|++..|...|.+++.++|
T Consensus 254 ~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 254 TGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred hChHHHHHHHHHHHHhhCC
Confidence 9999999999999999999
No 149
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.50 E-value=1.7e-06 Score=80.33 Aligned_cols=116 Identities=8% Similarity=-0.028 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHH--HHHHHHHHHccCHHHHHHHHHHHHHcCCCcH--HHHHHHHHH
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELF--ADRAQASIKLQNFTEAVADANRAIELEPSMS--KAYWRKATA 79 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~--~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~--~a~~~~g~~ 79 (281)
.....|..+...|++++|+..+.++++..|++.... ..+....+..++...++..++++++.+|+++ ..+..+|.+
T Consensus 265 l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l 344 (409)
T TIGR00540 265 LKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQL 344 (409)
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Confidence 456678899999999999999999999999987532 3333444456889999999999999999999 888899999
Q ss_pred HHHhhcHHHHHHHHH--HhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 80 CMKLEEYETAKVALE--KGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 80 ~~~~g~~~~A~~~~~--~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
+++.|+|++|..+|+ .+++.+|++... ..++.+...+++.
T Consensus 345 ~~~~~~~~~A~~~le~a~a~~~~p~~~~~-~~La~ll~~~g~~ 386 (409)
T TIGR00540 345 LMKHGEFIEAADAFKNVAACKEQLDANDL-AMAADAFDQAGDK 386 (409)
T ss_pred HHHcccHHHHHHHHHHhHHhhcCCCHHHH-HHHHHHHHHcCCH
Confidence 999999999999999 688888977654 4777777766554
No 150
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.49 E-value=5.8e-06 Score=76.45 Aligned_cols=112 Identities=14% Similarity=0.123 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHH-HHHHHHHHHHhh
Q 023550 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKA-YWRKATACMKLE 84 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a-~~~~g~~~~~~g 84 (281)
+..|...+..|||+.|.+...++-...+.....+..-+.+....|+++.|...+.++.+.+|++..+ ....+..+...|
T Consensus 88 ~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g 167 (398)
T PRK10747 88 TEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARN 167 (398)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCC
Confidence 3444445555555555544444333322212222222333355555555555555555555544322 222345555555
Q ss_pred cHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 023550 85 EYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (281)
Q Consensus 85 ~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (281)
+++.|...+++..+.+|+++.+...+..++.+.
T Consensus 168 ~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~ 200 (398)
T PRK10747 168 ENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT 200 (398)
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 555555555555555555554444444444333
No 151
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.44 E-value=2.8e-06 Score=76.81 Aligned_cols=117 Identities=16% Similarity=0.044 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHH-------------------------------------HHHHHHHH
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAEL-------------------------------------FADRAQAS 46 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~-------------------------------------~~~~a~~~ 46 (281)
....+|..++..|++++|+..+.+++..+|++..+ +..+|.++
T Consensus 45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~ 124 (355)
T cd05804 45 RAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGL 124 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHH
Confidence 34567888888999999999999988888877533 23456677
Q ss_pred HHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhH----HHHHHHHHHHHHhh
Q 023550 47 IKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF----TNLIKECEERIAEE 120 (281)
Q Consensus 47 ~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~----~~~l~~~~~~l~~~ 120 (281)
...|++++|+..+++++.++|++..++..+|.+++..|++++|+.++++++...|.+... +..+..+....++.
T Consensus 125 ~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~ 202 (355)
T cd05804 125 EEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDY 202 (355)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCH
Confidence 788999999999999999999998899999999999999999999999999888754432 22455565555555
No 152
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.44 E-value=2.7e-06 Score=84.61 Aligned_cols=113 Identities=13% Similarity=0.055 Sum_probs=92.3
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcH------------
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS------------ 70 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~------------ 70 (281)
.++......+...+++++|+..+..++..+|+...+|+..|..++..+++.++... .++.+-+.+.
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i 109 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKI 109 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHH
Confidence 35667788888999999999999999999999999999999998888887776555 5555544444
Q ss_pred -------HHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 023550 71 -------KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (281)
Q Consensus 71 -------~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (281)
.+++.+|.||-++|++++|...|+++++++|+|+.+...++-.....
T Consensus 110 ~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 110 LLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE 163 (906)
T ss_pred HhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh
Confidence 79999999999999999999999999999999988766666554443
No 153
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.43 E-value=4.2e-06 Score=73.14 Aligned_cols=116 Identities=16% Similarity=0.227 Sum_probs=89.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 023550 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS-----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA 79 (281)
Q Consensus 5 ~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~-----~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~ 79 (281)
+...-..|...++|++||+.-.+..+..++. +.+|..+|..+....+++.|+..+.+|++.+|+...+-..+|.+
T Consensus 144 lqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v 223 (389)
T COG2956 144 LQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRV 223 (389)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHH
Confidence 4445566777778888888888777776665 45677777777777888888888888888888888888888888
Q ss_pred HHHhhcHHHHHHHHHHhhhcCCCC-hhHHHHHHHHHHHHHhh
Q 023550 80 CMKLEEYETAKVALEKGASLAPGD-SRFTNLIKECEERIAEE 120 (281)
Q Consensus 80 ~~~~g~~~~A~~~~~~a~~l~p~~-~~~~~~l~~~~~~l~~~ 120 (281)
+...|+|+.|+..++.+++.||.- ..+...+..|+..+++.
T Consensus 224 ~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~ 265 (389)
T COG2956 224 ELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKP 265 (389)
T ss_pred HHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCH
Confidence 888888888888888888888764 23456666677666665
No 154
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.43 E-value=1.1e-05 Score=68.73 Aligned_cols=119 Identities=20% Similarity=0.166 Sum_probs=98.0
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---HHHHHH
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR 75 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~---~~a~~~ 75 (281)
+..|+++|...++.|+|.+|+..|+.+..+.|.+ ..+.+.++.++++.++|++|+..+++-+++.|.+ .-++|.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 4679999999999999999999999999998876 5788999999999999999999999999999875 447888
Q ss_pred HHHHHHHhh--------cHHHHHHHHHHhhhcCCCChh---HHHHHHHHHHHHHhh
Q 023550 76 KATACMKLE--------EYETAKVALEKGASLAPGDSR---FTNLIKECEERIAEE 120 (281)
Q Consensus 76 ~g~~~~~~g--------~~~~A~~~~~~a~~l~p~~~~---~~~~l~~~~~~l~~~ 120 (281)
+|.+++..- --.+|...|+..+...|+..- +...+..+..+|...
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~ 169 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGH 169 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHH
Confidence 899987642 345788889999999998764 345555555555443
No 155
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.42 E-value=1.1e-06 Score=81.09 Aligned_cols=105 Identities=26% Similarity=0.280 Sum_probs=96.0
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL---QNFTEAVADANRAIELEPSMSKAYWRKAT 78 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l---~~~~~A~~~~~~al~l~p~~~~a~~~~g~ 78 (281)
++.++..|+..+..+.+..|+..|.+++...|+...+|.+||.++++. |+.-.|+.++..|++++|...++||+++.
T Consensus 374 ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~ 453 (758)
T KOG1310|consen 374 IEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLAR 453 (758)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHH
Confidence 456788899999999999999999999999999999999999999997 57889999999999999999999999999
Q ss_pred HHHHhhcHHHHHHHHHHhhhcCCCChhH
Q 023550 79 ACMKLEEYETAKVALEKGASLAPGDSRF 106 (281)
Q Consensus 79 ~~~~~g~~~~A~~~~~~a~~l~p~~~~~ 106 (281)
++..++++.+|+.+..-+.-..|.+...
T Consensus 454 aL~el~r~~eal~~~~alq~~~Ptd~a~ 481 (758)
T KOG1310|consen 454 ALNELTRYLEALSCHWALQMSFPTDVAR 481 (758)
T ss_pred HHHHHhhHHHhhhhHHHHhhcCchhhhh
Confidence 9999999999999988888888866543
No 156
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.42 E-value=3.4e-06 Score=80.76 Aligned_cols=117 Identities=17% Similarity=0.081 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
.|...|..+...++-++|..++.++-..+|..+..|+.+|.++...|++++|.+.|..|+.++|++......+|.++...
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence 35567777888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHH--HHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 84 EEYETAKV--ALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 84 g~~~~A~~--~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
|+-.-|.. .+..+++++|.+.++|..++.+-..+++.
T Consensus 732 G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~ 770 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDS 770 (799)
T ss_pred CCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccch
Confidence 98888877 99999999999999999999998888776
No 157
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.41 E-value=6.1e-07 Score=62.97 Aligned_cols=65 Identities=18% Similarity=0.283 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CC-C---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI---SP-N---SAELFADRAQASIKLQNFTEAVADANRAIELE 66 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~---~p-~---~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 66 (281)
+..+...|..++..|+|++|+.+|++++.. .+ + -+..+.++|.++..+|++++|++.+++++.+.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 456788999999999999999999999976 22 2 25778999999999999999999999999763
No 158
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=3.1e-06 Score=78.59 Aligned_cols=105 Identities=13% Similarity=0.097 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
-.|+.-|.-|+-.|++.+|.++|.++..++|....+|+..|..+...+..++|+.+|..|-++-|......+.+|.-|.+
T Consensus 313 ~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~ 392 (611)
T KOG1173|consen 313 LSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMR 392 (611)
T ss_pred cchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHH
Confidence 35888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhhcCCCChhHH
Q 023550 83 LEEYETAKVALEKGASLAPGDSRFT 107 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~l~p~~~~~~ 107 (281)
+++++-|...|.+|+.+.|+|+-+.
T Consensus 393 t~n~kLAe~Ff~~A~ai~P~Dplv~ 417 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIAPSDPLVL 417 (611)
T ss_pred hccHHHHHHHHHHHHhcCCCcchhh
Confidence 9999999999999999999988543
No 159
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=3e-06 Score=76.20 Aligned_cols=109 Identities=19% Similarity=0.209 Sum_probs=97.9
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (281)
+..|+-.|..+|..++|..|+.+-.++|+.+|++..+++..|.+++.+++.++|+=.|+.|+.+.|.+.+.|-.+-.+|.
T Consensus 300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYL 379 (564)
T KOG1174|consen 300 ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYL 379 (564)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence 35678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhhcCCCChhHHHHH
Q 023550 82 KLEEYETAKVALEKGASLAPGDSRFTNLI 110 (281)
Q Consensus 82 ~~g~~~~A~~~~~~a~~l~p~~~~~~~~l 110 (281)
..|++.+|...-+++.+.-|.+......+
T Consensus 380 A~~~~kEA~~~An~~~~~~~~sA~~LtL~ 408 (564)
T KOG1174|consen 380 AQKRFKEANALANWTIRLFQNSARSLTLF 408 (564)
T ss_pred hhchHHHHHHHHHHHHHHhhcchhhhhhh
Confidence 99999999888888888777776655444
No 160
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.36 E-value=6.6e-06 Score=76.07 Aligned_cols=113 Identities=12% Similarity=0.067 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
.....|..+...|+.++|...+.++++. +.++.+...++.+ ..+++.+++..+++.++.+|+++..++.+|.++...
T Consensus 265 ~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~ 341 (398)
T PRK10747 265 LQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKH 341 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Confidence 4456788999999999999999999995 4456555555544 459999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 84 g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
|+|++|..+|+++++..|++.. ..++..+..++++.
T Consensus 342 ~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~ 377 (398)
T PRK10747 342 GEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKP 377 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCH
Confidence 9999999999999999998764 45677777766654
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.36 E-value=8.6e-07 Score=63.27 Aligned_cols=58 Identities=22% Similarity=0.347 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRA 62 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~a 62 (281)
.++..|.++++.|+|++|+..+++ +..++.+....+.+|.|++++|+|++|+..++++
T Consensus 27 ~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 27 YLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 466789999999999999999999 8888888888889999999999999999999875
No 162
>PRK15331 chaperone protein SicA; Provisional
Probab=98.34 E-value=3.9e-06 Score=67.00 Aligned_cols=89 Identities=11% Similarity=0.014 Sum_probs=82.8
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHH
Q 023550 32 SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIK 111 (281)
Q Consensus 32 ~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~ 111 (281)
.++.-+..+..|.-++..|++++|...|+-....++.+.+.++.+|.|+..+|+|++|+.+|..+..++++|+......+
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 34445778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 023550 112 ECEERIAEE 120 (281)
Q Consensus 112 ~~~~~l~~~ 120 (281)
.|.-.+++.
T Consensus 113 qC~l~l~~~ 121 (165)
T PRK15331 113 QCQLLMRKA 121 (165)
T ss_pred HHHHHhCCH
Confidence 999988876
No 163
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.31 E-value=1.1e-05 Score=76.32 Aligned_cols=107 Identities=24% Similarity=0.264 Sum_probs=75.9
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHH
Q 023550 13 FIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVA 92 (281)
Q Consensus 13 ~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~ 92 (281)
+...+|+.|-.+|.++....|. ..+|+.-+....-+++.++|++.++.+++..|++.+.|+.+|+++.++++.+.|...
T Consensus 629 ~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~a 707 (913)
T KOG0495|consen 629 FENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREA 707 (913)
T ss_pred hccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3334444444444444433332 334555666666678888888888888888888888888888888888888888888
Q ss_pred HHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 93 LEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 93 ~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
|..+++..|+...+|..+.+++...++.
T Consensus 708 Y~~G~k~cP~~ipLWllLakleEk~~~~ 735 (913)
T KOG0495|consen 708 YLQGTKKCPNSIPLWLLLAKLEEKDGQL 735 (913)
T ss_pred HHhccccCCCCchHHHHHHHHHHHhcch
Confidence 8888888888888888888877766543
No 164
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.30 E-value=1.5e-05 Score=69.81 Aligned_cols=103 Identities=14% Similarity=0.129 Sum_probs=94.7
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHH
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM-SKAYWRKATACM 81 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~-~~a~~~~g~~~~ 81 (281)
.-+-..+..+....+.+.|...+.+|+..+|+...+-+.+|.+++..|+|+.|++.++++++-+|.. +.+.-.+..||.
T Consensus 181 qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~ 260 (389)
T COG2956 181 QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYA 260 (389)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 3455678888889999999999999999999999999999999999999999999999999999986 778888999999
Q ss_pred HhhcHHHHHHHHHHhhhcCCCChh
Q 023550 82 KLEEYETAKVALEKGASLAPGDSR 105 (281)
Q Consensus 82 ~~g~~~~A~~~~~~a~~l~p~~~~ 105 (281)
++|+.++....+.++.+..++...
T Consensus 261 ~lg~~~~~~~fL~~~~~~~~g~~~ 284 (389)
T COG2956 261 QLGKPAEGLNFLRRAMETNTGADA 284 (389)
T ss_pred HhCCHHHHHHHHHHHHHccCCccH
Confidence 999999999999999999887653
No 165
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.28 E-value=8.2e-06 Score=74.23 Aligned_cols=117 Identities=21% Similarity=0.163 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
+++++.|..+-..|+.++|+.+|-+.-..--+++++++++|..|..+.+..+|++++.++..+-|+++.++-.+|..|-+
T Consensus 525 ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydq 604 (840)
T KOG2003|consen 525 EALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQ 604 (840)
T ss_pred HHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhc
Confidence 35666677777777777777777665444455667777777777777777777777777777777666666666666655
Q ss_pred hhc----------------------------------HHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHh
Q 023550 83 LEE----------------------------------YETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (281)
Q Consensus 83 ~g~----------------------------------~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (281)
.|+ +++|+.+|+++--+.|+...+...++.|-.+-++
T Consensus 605 egdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgn 675 (840)
T KOG2003|consen 605 EGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGN 675 (840)
T ss_pred ccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccc
Confidence 554 5666677777777777766666677777665544
No 166
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.28 E-value=1.5e-05 Score=73.02 Aligned_cols=105 Identities=19% Similarity=0.211 Sum_probs=97.4
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHH
Q 023550 13 FIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVA 92 (281)
Q Consensus 13 ~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~ 92 (281)
-..++|+.|+..|.+....+|+ +...+|.+++..++..+|++.+.+++...|.+...+...+..+...++|+.|+..
T Consensus 180 ~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~i 256 (395)
T PF09295_consen 180 SLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEI 256 (395)
T ss_pred hhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3467899999999999888765 5667899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 93 LEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 93 ~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
.+++..+.|++-..|..+++|+..+++.
T Consensus 257 Ak~av~lsP~~f~~W~~La~~Yi~~~d~ 284 (395)
T PF09295_consen 257 AKKAVELSPSEFETWYQLAECYIQLGDF 284 (395)
T ss_pred HHHHHHhCchhHHHHHHHHHHHHhcCCH
Confidence 9999999999999999999999988887
No 167
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.26 E-value=2.2e-05 Score=74.52 Aligned_cols=95 Identities=19% Similarity=0.106 Sum_probs=63.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhc
Q 023550 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE 85 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~ 85 (281)
+-.|.-+-..|+|++|+++.+++|...|+.+++|+.+|.++-++|++.+|.+.++.|-.+|..|.-.....+..+++.|+
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~ 277 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGR 277 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCC
Confidence 44455566667777777777777777777777777777777777777777777777777776666666666666666777
Q ss_pred HHHHHHHHHHhhhcC
Q 023550 86 YETAKVALEKGASLA 100 (281)
Q Consensus 86 ~~~A~~~~~~a~~l~ 100 (281)
.++|...+..-.+.+
T Consensus 278 ~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 278 IEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHHHhhcCCC
Confidence 777766666554443
No 168
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.25 E-value=5.4e-05 Score=63.42 Aligned_cols=116 Identities=16% Similarity=0.100 Sum_probs=89.2
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHcCCC
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQ-----------NFTEAVADANRAIELEPS 68 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~---~~~~~~~a~~~~~l~-----------~~~~A~~~~~~al~l~p~ 68 (281)
+..+..|.++++.|+|++|+..|++.+...|++ ..+++.+|.+++.+. ...+|+..++..+...|+
T Consensus 43 ~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~ 122 (203)
T PF13525_consen 43 QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN 122 (203)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcC
Confidence 467889999999999999999999999999987 468889999987764 345899999999999997
Q ss_pred c-----------------HHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHH---HHHHHHHHHHH
Q 023550 69 M-----------------SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT---NLIKECEERIA 118 (281)
Q Consensus 69 ~-----------------~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~---~~l~~~~~~l~ 118 (281)
. ..--+..|.-|++.|.|..|+.-++.+++..|+..... ..+..+..+++
T Consensus 123 S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~ 192 (203)
T PF13525_consen 123 SEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLG 192 (203)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhC
Confidence 5 22234578889999999999999999999999987653 33444444443
No 169
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.25 E-value=1.7e-05 Score=78.10 Aligned_cols=104 Identities=15% Similarity=0.140 Sum_probs=95.9
Q ss_pred ChhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 023550 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQN-FTEAVADANRAIELEPSMSKAYWRKATA 79 (281)
Q Consensus 1 ma~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~-~~~A~~~~~~al~l~p~~~~a~~~~g~~ 79 (281)
|+......|....+.++|++|++...++++++|+|..+++.+|.++..++. .++|-+.|-.|.+++|++..||-.+|..
T Consensus 1 ~vK~aLK~Ak~al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nL 80 (1238)
T KOG1127|consen 1 EVKTALKSAKDALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNL 80 (1238)
T ss_pred ChhhHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHH
Confidence 456778889999999999999999999999999999999999999999998 9999999999999999999999999999
Q ss_pred HHH---hhcHHHHHHHHHHhhhcCCCCh
Q 023550 80 CMK---LEEYETAKVALEKGASLAPGDS 104 (281)
Q Consensus 80 ~~~---~g~~~~A~~~~~~a~~l~p~~~ 104 (281)
|.. .-+++++-.+|++++.+.++..
T Consensus 81 ye~~~dIl~ld~~~~~yq~~~l~le~q~ 108 (1238)
T KOG1127|consen 81 YERYNDILDLDRAAKCYQRAVLILENQS 108 (1238)
T ss_pred HHccchhhhhhHhHHHHHHHHHhhhhhh
Confidence 887 4578899999999988887655
No 170
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=1.3e-05 Score=72.13 Aligned_cols=100 Identities=12% Similarity=0.004 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhh
Q 023550 18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGA 97 (281)
Q Consensus 18 y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~ 97 (281)
-++|-..|+++|.++|....+...+|..+..-|++++++..+++.+...|+. ..+..+|..+...+.+++|+.+|..|+
T Consensus 420 rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 420 REKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999877 588999999999999999999999999
Q ss_pred hcCCCChhHHHHHHHHHHHHH
Q 023550 98 SLAPGDSRFTNLIKECEERIA 118 (281)
Q Consensus 98 ~l~p~~~~~~~~l~~~~~~l~ 118 (281)
+++|++......+.++++...
T Consensus 499 r~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 499 RQDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred hcCccchHHHHHHHHHHhccC
Confidence 999999999999888865443
No 171
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.24 E-value=3.8e-06 Score=80.11 Aligned_cols=78 Identities=21% Similarity=0.320 Sum_probs=71.8
Q ss_pred HHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 43 AQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 43 a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
|...+..++|+++..++++.++++|-....||.+|.+..++++++.|..+|.+++.++|++...|..+..++-++++.
T Consensus 492 ~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k 569 (777)
T KOG1128|consen 492 ALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKK 569 (777)
T ss_pred ccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhh
Confidence 333444589999999999999999999999999999999999999999999999999999999999999998888776
No 172
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.24 E-value=1.6e-05 Score=75.19 Aligned_cols=117 Identities=17% Similarity=0.065 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
-|+..++.....++.++|++++.++|+..|+...+|+.+|+++..+++.+.|...|...++..|.....|..++.+-...
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~ 732 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKD 732 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHh
Confidence 45666777778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 84 g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
|+.-.|...|.++...+|.+..+|...-+++.+.+..
T Consensus 733 ~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~ 769 (913)
T KOG0495|consen 733 GQLVRARSILDRARLKNPKNALLWLESIRMELRAGNK 769 (913)
T ss_pred cchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCH
Confidence 9999999999999999999987766555555554443
No 173
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.22 E-value=4e-05 Score=62.27 Aligned_cols=101 Identities=23% Similarity=0.237 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHH
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIE-ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATAC 80 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~-~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~--~~~a~~~~g~~~ 80 (281)
..+..|+.+.+.|+|.+|..+|.+++. ..-+++..+..+|++.+.++++..|.+.++...+.+|. .+..++.+|..|
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l 170 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL 170 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence 456789999999999999999999987 46778999999999999999999999999999999885 478899999999
Q ss_pred HHhhcHHHHHHHHHHhhhcCCCCh
Q 023550 81 MKLEEYETAKVALEKGASLAPGDS 104 (281)
Q Consensus 81 ~~~g~~~~A~~~~~~a~~l~p~~~ 104 (281)
...|++++|...|+.++...|+-.
T Consensus 171 aa~g~~a~Aesafe~a~~~ypg~~ 194 (251)
T COG4700 171 AAQGKYADAESAFEVAISYYPGPQ 194 (251)
T ss_pred HhcCCchhHHHHHHHHHHhCCCHH
Confidence 999999999999999999999754
No 174
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.21 E-value=2.7e-05 Score=77.68 Aligned_cols=111 Identities=10% Similarity=0.055 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc------------------
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL------------------ 65 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l------------------ 65 (281)
+++.+|.+|-+.|++++|...|+++++.+|+|+.++.++|..|... +.++|++.+.+|+..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~ 196 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLV 196 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999999999 999999999999864
Q ss_pred --CCCcHHHH--------HHHH------------HHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHH
Q 023550 66 --EPSMSKAY--------WRKA------------TACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE 115 (281)
Q Consensus 66 --~p~~~~a~--------~~~g------------~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 115 (281)
+|.+.+.+ -.+| .+|...++|++++..|+.+++++|.|..+...+..|..
T Consensus 197 ~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 197 HYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 23332221 1124 77888899999999999999999999999888988876
No 175
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.21 E-value=8.9e-06 Score=76.62 Aligned_cols=97 Identities=21% Similarity=0.182 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CC
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASIKLQNFTEAVADANRAIEL--------EP 67 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~--------~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l--------~p 67 (281)
.....|..|+..|+|+.|+..+..+++. .+.-......+|..|..+++|.+|+..|++|+.+ +|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3455899999999999999999999998 4444555566999999999999999999999975 34
Q ss_pred CcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcC
Q 023550 68 SMSKAYWRKATACMKLEEYETAKVALEKGASLA 100 (281)
Q Consensus 68 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~ 100 (281)
.-+.++.++|.+|+..|+|++|..++++|+++.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~ 313 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIY 313 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 457789999999999999999999999998864
No 176
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.20 E-value=1.1e-05 Score=76.10 Aligned_cols=97 Identities=27% Similarity=0.291 Sum_probs=84.7
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASIKLQNFTEAVADANRAIELE-------- 66 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~--------~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~-------- 66 (281)
..+...|..|...++|.+|+.+|.+|+.. +|.-+.++.++|.+|.+.|+|.+|..++++|+++-
T Consensus 242 ~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~ 321 (508)
T KOG1840|consen 242 SMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASH 321 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCh
Confidence 34556899999999999999999999987 44446789999999999999999999999999764
Q ss_pred CCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhc
Q 023550 67 PSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (281)
Q Consensus 67 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l 99 (281)
+.-+..+...+..+..++++++|...+++++++
T Consensus 322 ~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 322 PEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 334668888999999999999999999999876
No 177
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.19 E-value=1.3e-05 Score=65.71 Aligned_cols=68 Identities=28% Similarity=0.388 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHH
Q 023550 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKA 72 (281)
Q Consensus 5 ~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a 72 (281)
+.++|-++++.+.++.||...+++|.++|....++.+||.+|.++.+|++|+++|.+.+.++|....+
T Consensus 137 y~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 137 YSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred HhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHH
Confidence 56788899999999999999999999999999999999999999999999999999999999988644
No 178
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.19 E-value=1.6e-05 Score=60.76 Aligned_cols=84 Identities=19% Similarity=0.145 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCC---ChhHHHHH
Q 023550 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKGASLAPG---DSRFTNLI 110 (281)
Q Consensus 37 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~---~~~~~~~l 110 (281)
.+++++|.++-.+|+.++|+..|++++..+... ..+++.+|.++..+|++++|+..+++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 468899999999999999999999999986543 679999999999999999999999999999888 55666666
Q ss_pred HHHHHHHHhh
Q 023550 111 KECEERIAEE 120 (281)
Q Consensus 111 ~~~~~~l~~~ 120 (281)
..+...++..
T Consensus 82 Al~L~~~gr~ 91 (120)
T PF12688_consen 82 ALALYNLGRP 91 (120)
T ss_pred HHHHHHCCCH
Confidence 6555444443
No 179
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.18 E-value=2.2e-05 Score=69.35 Aligned_cols=90 Identities=16% Similarity=0.207 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcH-HHHHHHHHH
Q 023550 17 YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY-ETAKVALEK 95 (281)
Q Consensus 17 ~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~-~~A~~~~~~ 95 (281)
.|++|.-.|++..+..+.++..+..+|.|++.+|+|++|...+..++..+|.++..+.+++.+...+|+. +.+.+++.+
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 4666666666655555566666666666666666666666666666666666666666666666666666 445556666
Q ss_pred hhhcCCCChhH
Q 023550 96 GASLAPGDSRF 106 (281)
Q Consensus 96 a~~l~p~~~~~ 106 (281)
....+|+++-+
T Consensus 262 L~~~~p~h~~~ 272 (290)
T PF04733_consen 262 LKQSNPNHPLV 272 (290)
T ss_dssp CHHHTTTSHHH
T ss_pred HHHhCCCChHH
Confidence 66666665543
No 180
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.18 E-value=4.2e-06 Score=52.09 Aligned_cols=42 Identities=26% Similarity=0.238 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 023550 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (281)
Q Consensus 37 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~ 78 (281)
.++..+|.+|..+|++++|++.|+++++.+|++..+|+.+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 355666666666666666666666666666666666666654
No 181
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=98.16 E-value=1.1e-05 Score=58.73 Aligned_cols=76 Identities=16% Similarity=0.210 Sum_probs=64.3
Q ss_pred CcccccCCCeEEEEEEecCCCCcceEEEEeee-EEEEEEEcC-----C----------CCeeeeccccccccccCcceEE
Q 023550 175 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQ-ILSVSIDVP-----G----------EEAYHFQPRLFGKIIPAKCRYE 238 (281)
Q Consensus 175 r~~w~Qt~~~v~i~v~~k~~~~~~~~v~~~~~-~l~~~~~~~-----~----------~~~~~~~~~L~~~I~p~~s~~~ 238 (281)
|++|+.+++.+.|.+.++|+.++++.|.+..+ .|.|+-... . ...|.-.+.|...|+++..+.+
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~ 80 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF 80 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence 67999999999999999999999999999875 788885321 1 1246667789999999999999
Q ss_pred EeCcEEEEEEee
Q 023550 239 VLSTKVEIRLAK 250 (281)
Q Consensus 239 v~~~kiei~L~K 250 (281)
..++-++|+|.|
T Consensus 81 ~~nGvL~I~lPK 92 (92)
T cd06472 81 LENGVLTVTVPK 92 (92)
T ss_pred EECCEEEEEecC
Confidence 999999999976
No 182
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.12 E-value=2.7e-05 Score=68.65 Aligned_cols=103 Identities=21% Similarity=0.224 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC------
Q 023550 2 ATDLEKKAKEAFID-DYFELAYDLYSQAIEISPN--S----AELFADRAQASIKLQNFTEAVADANRAIELEPS------ 68 (281)
Q Consensus 2 a~~~~~~g~~~~~~-~~y~~Al~~y~~al~~~p~--~----~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~------ 68 (281)
|..+...|..+... |++++|+++|.+|++.... . ...+.+.|.++.++|+|++|++.|+++....-.
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 34567778888888 9999999999999987222 2 466789999999999999999999999875422
Q ss_pred c-HHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCCh
Q 023550 69 M-SKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104 (281)
Q Consensus 69 ~-~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~ 104 (281)
. ...++..+.|++..|++..|...|++....+|+-.
T Consensus 194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 1 23567788999999999999999999999988543
No 183
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.12 E-value=0.00016 Score=62.26 Aligned_cols=110 Identities=13% Similarity=0.067 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccC------------------HHHHHHHHHHH
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQN------------------FTEAVADANRA 62 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~---~~~~~~~a~~~~~l~~------------------~~~A~~~~~~a 62 (281)
..+..|..+++.++|++|+..|++.++.+|++ ..+++.+|.++..+++ ..+|+..+++.
T Consensus 71 a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~l 150 (243)
T PRK10866 71 VQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKL 150 (243)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHH
Confidence 46788999999999999999999999998887 5778899998766541 35788999999
Q ss_pred HHcCCCc---HH--------------HHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHH
Q 023550 63 IELEPSM---SK--------------AYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (281)
Q Consensus 63 l~l~p~~---~~--------------a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (281)
++..|+. .+ --+..|.-|++.|.|..|+.-++..++..|+.+....-+..+
T Consensus 151 i~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l 218 (243)
T PRK10866 151 VRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLM 218 (243)
T ss_pred HHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence 9999974 12 223457778999999999999999999999877654444443
No 184
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.11 E-value=0.0001 Score=70.09 Aligned_cols=70 Identities=21% Similarity=0.208 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChh
Q 023550 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 105 (281)
Q Consensus 36 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~ 105 (281)
..+++.+|+.|..+|++++|++.+++||...|...+.|+.+|.+|-+.|++.+|..++..|..+|..|..
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRy 263 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRY 263 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHH
Confidence 3567889999999999999999999999999999999999999999999999999999999999998764
No 185
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.11 E-value=3.5e-05 Score=72.78 Aligned_cols=109 Identities=13% Similarity=0.029 Sum_probs=54.2
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcH
Q 023550 7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY 86 (281)
Q Consensus 7 ~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~ 86 (281)
.+|..+...|+-++|..+.+.++..++.+...|--+|..+..-++|.+|+.+|+.|+.++|+|...|+-++....++++|
T Consensus 46 mkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~ 125 (700)
T KOG1156|consen 46 MKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY 125 (700)
T ss_pred hccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Confidence 34444444555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhhhcCCCChhHHHHHHHHHH
Q 023550 87 ETAKVALEKGASLAPGDSRFTNLIKECEE 115 (281)
Q Consensus 87 ~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 115 (281)
+.....-.+.+++.|+....|...+..+-
T Consensus 126 ~~~~~tr~~LLql~~~~ra~w~~~Avs~~ 154 (700)
T KOG1156|consen 126 EGYLETRNQLLQLRPSQRASWIGFAVAQH 154 (700)
T ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 55554444555555544444443333333
No 186
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.10 E-value=1e-05 Score=79.59 Aligned_cols=114 Identities=15% Similarity=0.062 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
.|..+|..+.+.++..+|+..|+.+++.+|.+...|..+|.+|...|+|.-|+..|++|..++|.+.-+.|..+.....+
T Consensus 564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~ 643 (1238)
T KOG1127|consen 564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDN 643 (1238)
T ss_pred hhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHh
Confidence 35567888888999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred hcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 023550 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (281)
Q Consensus 84 g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (281)
|+|.+|+..+...+........+...++.+.-++
T Consensus 644 GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~ 677 (1238)
T KOG1127|consen 644 GKYKEALDALGLIIYAFSLERTGQNGLAESVIRD 677 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9999999988877766554444555555554444
No 187
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.09 E-value=0.00013 Score=57.46 Aligned_cols=95 Identities=21% Similarity=0.194 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC----------------------HHHHHHHHHHHHHccCHHHHHHHHHH
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----------------------AELFADRAQASIKLQNFTEAVADANR 61 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~----------------------~~~~~~~a~~~~~l~~~~~A~~~~~~ 61 (281)
.+...|......++...++..+.+++.+...+ ..++..++..+...|++++|+..+++
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 34556777788889999999999999984332 34456677788889999999999999
Q ss_pred HHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhh
Q 023550 62 AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGAS 98 (281)
Q Consensus 62 al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~ 98 (281)
++.++|.+-.+|..+-.+|...|++..|+..|+++.+
T Consensus 88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988744
No 188
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.07 E-value=4.8e-05 Score=67.28 Aligned_cols=114 Identities=16% Similarity=0.098 Sum_probs=88.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023550 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ--NFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~--~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
.-....+...++++.|.+.+...-+.+.++.-..+.-|++.+..| ++.+|.-.|+......+..+..+..++.|+..+
T Consensus 135 al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~ 214 (290)
T PF04733_consen 135 ALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQL 214 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh
Confidence 345667889999999999999988877776555555555555555 699999999998887788899999999999999
Q ss_pred hcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHh
Q 023550 84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (281)
Q Consensus 84 g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (281)
|+|++|...+.+++..+|+++++...+.-|...++.
T Consensus 215 ~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk 250 (290)
T PF04733_consen 215 GHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK 250 (290)
T ss_dssp T-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999877776666555444
No 189
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.06 E-value=6.5e-06 Score=48.00 Aligned_cols=32 Identities=28% Similarity=0.505 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCC
Q 023550 71 KAYWRKATACMKLEEYETAKVALEKGASLAPG 102 (281)
Q Consensus 71 ~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~ 102 (281)
.+|+++|.+|+.+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45555666666666666666666666655554
No 190
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=2.4e-05 Score=62.01 Aligned_cols=80 Identities=16% Similarity=0.200 Sum_probs=70.8
Q ss_pred CCcccccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcCC---------------CCeeeeccccccccccCcceEE
Q 023550 174 YRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG---------------EEAYHFQPRLFGKIIPAKCRYE 238 (281)
Q Consensus 174 ~r~~w~Qt~~~v~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~~---------------~~~~~~~~~L~~~I~p~~s~~~ 238 (281)
..|+++++++.+.|++-+.|+.+++++|.+.++.|.|+....+ ...|.-.+.|...|+++..+.+
T Consensus 41 P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~~A~ 120 (146)
T COG0071 41 PPVDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKAK 120 (146)
T ss_pred CcEEEEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccceeeE
Confidence 4799999999999999999999999999999999999976543 1346677899999999988999
Q ss_pred EeCcEEEEEEeecCC
Q 023550 239 VLSTKVEIRLAKAEP 253 (281)
Q Consensus 239 v~~~kiei~L~K~~~ 253 (281)
...+-+.|+|.|.++
T Consensus 121 ~~nGvL~I~lpk~~~ 135 (146)
T COG0071 121 YKNGLLTVTLPKAEP 135 (146)
T ss_pred eeCcEEEEEEecccc
Confidence 999999999999775
No 191
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.05 E-value=4.6e-05 Score=66.35 Aligned_cols=84 Identities=10% Similarity=-0.012 Sum_probs=70.0
Q ss_pred HHHHHHHHHHH-HHccCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChh---HHH
Q 023550 36 AELFADRAQAS-IKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR---FTN 108 (281)
Q Consensus 36 ~~~~~~~a~~~-~~l~~~~~A~~~~~~al~l~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~---~~~ 108 (281)
....+..|..+ ++.|+|++|+..|+..+...|+. +.++|.+|.+|+..|+|++|+..|++++...|+++. ++.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 46678888887 56799999999999999999987 589999999999999999999999999999888654 444
Q ss_pred HHHHHHHHHHh
Q 023550 109 LIKECEERIAE 119 (281)
Q Consensus 109 ~l~~~~~~l~~ 119 (281)
.++.+...+++
T Consensus 222 klg~~~~~~g~ 232 (263)
T PRK10803 222 KVGVIMQDKGD 232 (263)
T ss_pred HHHHHHHHcCC
Confidence 45556554443
No 192
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.03 E-value=8.2e-06 Score=71.93 Aligned_cols=82 Identities=17% Similarity=0.176 Sum_probs=70.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHH
Q 023550 39 FADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (281)
Q Consensus 39 ~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (281)
+-.+|+-|++.|+|++|+.+|.+++.++|.++..+.+++.+|+++++|..|...+..|+.++..-..+....+.+...|+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45689999999999999999999999999999999999999999999999999999999998765555555555555554
Q ss_pred hh
Q 023550 119 EE 120 (281)
Q Consensus 119 ~~ 120 (281)
..
T Consensus 180 ~~ 181 (536)
T KOG4648|consen 180 NN 181 (536)
T ss_pred hH
Confidence 44
No 193
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.03 E-value=1.1e-05 Score=46.77 Aligned_cols=33 Identities=30% Similarity=0.460 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCC
Q 023550 71 KAYWRKATACMKLEEYETAKVALEKGASLAPGD 103 (281)
Q Consensus 71 ~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~ 103 (281)
++++.+|.+++.+|+|++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 466677777777777777777777777776654
No 194
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.02 E-value=5e-06 Score=48.74 Aligned_cols=32 Identities=34% Similarity=0.483 Sum_probs=19.4
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHH
Q 023550 59 ANRAIELEPSMSKAYWRKATACMKLEEYETAK 90 (281)
Q Consensus 59 ~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~ 90 (281)
|++||+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45566666666666666666666666666554
No 195
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=0.00029 Score=61.23 Aligned_cols=98 Identities=20% Similarity=0.100 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHH-----------------------
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN----------------------- 60 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~----------------------- 60 (281)
..+.+|..+...|++.+|...|..++...|++..+...+|.||+.+|+.+.|...+.
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q 215 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ 215 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence 456788899999999999999999999999999999999999999999977643332
Q ss_pred -----------HHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCC
Q 023550 61 -----------RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101 (281)
Q Consensus 61 -----------~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p 101 (281)
+.+..+|++..+-+.+|..|...|++++|...+-..++.+-
T Consensus 216 aa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 216 AAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred HhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 22334789999999999999999999999998888777654
No 196
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.98 E-value=1.6e-05 Score=46.28 Aligned_cols=33 Identities=30% Similarity=0.499 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc
Q 023550 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSM 69 (281)
Q Consensus 37 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 69 (281)
.+|+++|.+|..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 467777777777777777777777777777753
No 197
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.96 E-value=1.6e-05 Score=49.38 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHH
Q 023550 70 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112 (281)
Q Consensus 70 ~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 112 (281)
+.+++.+|.+|..+|++++|+..|+++++.+|+|..++..+++
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3678999999999999999999999999999999998877664
No 198
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=0.00018 Score=62.56 Aligned_cols=110 Identities=18% Similarity=0.143 Sum_probs=93.9
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHH
Q 023550 11 EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAK 90 (281)
Q Consensus 11 ~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~ 90 (281)
.+.++.+|.+||+++..-.+.+|.+...+..+|.||+...+|..|..+|++...+.|......+..++.+++.+.|.+|+
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCChhHHHHHHHHHHHHHhhhCcC
Q 023550 91 VALEKGASLAPGDSRFTNLIKECEERIAEETGEL 124 (281)
Q Consensus 91 ~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~~~~~ 124 (281)
....... +++.+....-+++..++-..++.
T Consensus 99 rV~~~~~----D~~~L~~~~lqLqaAIkYse~Dl 128 (459)
T KOG4340|consen 99 RVAFLLL----DNPALHSRVLQLQAAIKYSEGDL 128 (459)
T ss_pred HHHHHhc----CCHHHHHHHHHHHHHHhcccccC
Confidence 8766543 33556666666666666654443
No 199
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.95 E-value=8.8e-06 Score=47.67 Aligned_cols=34 Identities=35% Similarity=0.620 Sum_probs=31.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHH
Q 023550 24 LYSQAIEISPNSAELFADRAQASIKLQNFTEAVA 57 (281)
Q Consensus 24 ~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~ 57 (281)
+|+++|+++|+++.+|.++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4889999999999999999999999999999863
No 200
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.91 E-value=0.00044 Score=52.03 Aligned_cols=94 Identities=23% Similarity=0.209 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------------HHHHHHHHHHHHHccCHHHHHHHHHHHHH-------c
Q 023550 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS------------AELFADRAQASIKLQNFTEAVADANRAIE-------L 65 (281)
Q Consensus 5 ~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~------------~~~~~~~a~~~~~l~~~~~A~~~~~~al~-------l 65 (281)
....|...+..|-|++|..-|+++++...+- ...+..++.++..+|+|++++..++++|. +
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL 91 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL 91 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence 4567788889999999999999999873321 34567789999999999999999999985 4
Q ss_pred CCCc----HHHHHHHHHHHHHhhcHHHHHHHHHHhhh
Q 023550 66 EPSM----SKAYWRKATACMKLEEYETAKVALEKGAS 98 (281)
Q Consensus 66 ~p~~----~~a~~~~g~~~~~~g~~~~A~~~~~~a~~ 98 (281)
+.+. ..+.+.+|.++..+|+.++|+..|+.+-+
T Consensus 92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 4444 44668899999999999999999988754
No 201
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.00022 Score=66.92 Aligned_cols=100 Identities=18% Similarity=0.182 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHH---------------------------------HHHHHHHHHcc
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELF---------------------------------ADRAQASIKLQ 50 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~---------------------------------~~~a~~~~~l~ 50 (281)
.++..-+.+...++|++|+....+.+...|++.+++ +.+|.|+++++
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcc
Confidence 456666677777788888888888777777764443 45666677777
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhH
Q 023550 51 NFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF 106 (281)
Q Consensus 51 ~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~ 106 (281)
+.++|+.+++ .+++.+......+|+.+|++|+|++|+..|+...+.+-.+.+.
T Consensus 94 k~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~ 146 (652)
T KOG2376|consen 94 KLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDE 146 (652)
T ss_pred cHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHH
Confidence 7777766666 4556666788888999999999999999999888777665543
No 202
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=97.90 E-value=6.3e-05 Score=53.72 Aligned_cols=74 Identities=19% Similarity=0.284 Sum_probs=64.5
Q ss_pred ccccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcCC--------------CCeeeeccccccccccCcceEEEeCc
Q 023550 177 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG--------------EEAYHFQPRLFGKIIPAKCRYEVLST 242 (281)
Q Consensus 177 ~w~Qt~~~v~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~~--------------~~~~~~~~~L~~~I~p~~s~~~v~~~ 242 (281)
+++++++.+.|.|.++|+.++++.|.+..+.|.|+..... ...|.-.+.|...|+++..+..+.++
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~G 80 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLENG 80 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeCC
Confidence 4788999999999999999999999999999999854321 34688888999999999999999999
Q ss_pred EEEEEEee
Q 023550 243 KVEIRLAK 250 (281)
Q Consensus 243 kiei~L~K 250 (281)
.++|++.|
T Consensus 81 ~L~I~~pk 88 (88)
T cd06464 81 VLTITLPK 88 (88)
T ss_pred EEEEEEcC
Confidence 99999876
No 203
>KOG4379 consensus Uncharacterized conserved protein (tumor antigen CML66 in humans) [Function unknown]
Probab=97.88 E-value=2.2e-05 Score=70.98 Aligned_cols=84 Identities=15% Similarity=0.250 Sum_probs=72.2
Q ss_pred CcccccCCCeEEEEEEecC-CCCcceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCcceEEEeC-cEEEEEEeecC
Q 023550 175 RHEFYQKPEEVVVTVFAKG-IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLS-TKVEIRLAKAE 252 (281)
Q Consensus 175 r~~w~Qt~~~v~i~v~~k~-~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~-~kiei~L~K~~ 252 (281)
-|.|.|+++.|.|++.+.. .+.+++.|.+..+.+.+.+. ..-.|++.||..|.-+.|.|.|.. .++|+.|.|++
T Consensus 291 ~y~w~qt~d~~~~~~~~p~~~~~~~i~Iq~~~~~v~v~~~----dh~~~~g~lyasv~he~s~~ii~ean~Le~sl~K~d 366 (596)
T KOG4379|consen 291 SYSWSQTDDNVLIRFNVPSTASAKEINIQGSKTTVVVKHL----DHVIFDGELYASVGHELSAFIIAEANGLELSLTKAD 366 (596)
T ss_pred cceeeeccCcceEEEecccccccceEEEEecCceEEEEee----eeEEeccchhhhccccchhhhhhhhccceEEEeecc
Confidence 6999999999999998755 55688999999998888763 245689999999999999999998 69999999995
Q ss_pred C-CCCCccccC
Q 023550 253 P-IQWSSLEFS 262 (281)
Q Consensus 253 ~-~~W~~L~~~ 262 (281)
. ..|++|-..
T Consensus 367 e~~twprL~~~ 377 (596)
T KOG4379|consen 367 EIQTWPRLFAQ 377 (596)
T ss_pred cccccchheee
Confidence 5 899999643
No 204
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=97.86 E-value=9.1e-05 Score=54.81 Aligned_cols=77 Identities=16% Similarity=0.251 Sum_probs=61.3
Q ss_pred ccccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcC----CC---------CeeeeccccccccccCcceEEEeCcE
Q 023550 177 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP----GE---------EAYHFQPRLFGKIIPAKCRYEVLSTK 243 (281)
Q Consensus 177 ~w~Qt~~~v~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~----~~---------~~~~~~~~L~~~I~p~~s~~~v~~~k 243 (281)
||+++++.+.|.+-+.|+.+++++|.+..+.|.|+.... ++ ..|.-.+.|...|+++..+.++.++.
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~Gv 80 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYENGV 80 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETTSE
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecCCE
Confidence 689999999999999999999999999999998885432 11 24566778999999999999999999
Q ss_pred EEEEEeecCC
Q 023550 244 VEIRLAKAEP 253 (281)
Q Consensus 244 iei~L~K~~~ 253 (281)
+.|++.|...
T Consensus 81 L~I~~pk~~~ 90 (102)
T PF00011_consen 81 LTITIPKKEE 90 (102)
T ss_dssp EEEEEEBSSS
T ss_pred EEEEEEcccc
Confidence 9999999764
No 205
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=0.00017 Score=64.05 Aligned_cols=87 Identities=16% Similarity=0.121 Sum_probs=74.2
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHH
Q 023550 10 KEAFIDDYFELAYDLYSQAIEISPNSA-ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET 88 (281)
Q Consensus 10 ~~~~~~~~y~~Al~~y~~al~~~p~~~-~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~ 88 (281)
..+....||..|+.+++-.+..+.... ....-+|.|++.+|+|++|+..|..+..-+.-+++.+.++|.|++.+|.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 346678899999999998887654433 4556689999999999999999999998777789999999999999999999
Q ss_pred HHHHHHHh
Q 023550 89 AKVALEKG 96 (281)
Q Consensus 89 A~~~~~~a 96 (281)
|.....++
T Consensus 110 A~~~~~ka 117 (557)
T KOG3785|consen 110 AKSIAEKA 117 (557)
T ss_pred HHHHHhhC
Confidence 98876665
No 206
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.85 E-value=9.3e-05 Score=47.86 Aligned_cols=49 Identities=22% Similarity=0.312 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHh
Q 023550 71 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (281)
Q Consensus 71 ~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (281)
+.+|.+|.+++++|+|.+|..+...+++++|+|..+......++.++..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k 50 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK 50 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence 4688899999999999999999999999999999988888888877664
No 207
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=97.83 E-value=8.8e-05 Score=54.01 Aligned_cols=75 Identities=13% Similarity=0.216 Sum_probs=61.1
Q ss_pred CcccccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcCC--------C---------CeeeeccccccccccCcceE
Q 023550 175 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG--------E---------EAYHFQPRLFGKIIPAKCRY 237 (281)
Q Consensus 175 r~~w~Qt~~~v~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~~--------~---------~~~~~~~~L~~~I~p~~s~~ 237 (281)
+.+|+++++.+.|.+.++|+.+++++|.+..+.|.|+..... + ..|.-.+.|. .|+++..+.
T Consensus 2 ~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~A 80 (93)
T cd06471 2 KTDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIKA 80 (93)
T ss_pred ceeEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCEE
Confidence 679999999999999999999999999999999999753321 0 1233345564 799998999
Q ss_pred EEeCcEEEEEEee
Q 023550 238 EVLSTKVEIRLAK 250 (281)
Q Consensus 238 ~v~~~kiei~L~K 250 (281)
+..++.+.|+|.|
T Consensus 81 ~~~dGvL~I~lPK 93 (93)
T cd06471 81 KYENGVLKITLPK 93 (93)
T ss_pred EEECCEEEEEEcC
Confidence 9999999999976
No 208
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.82 E-value=5e-05 Score=43.97 Aligned_cols=32 Identities=34% Similarity=0.487 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC
Q 023550 37 ELFADRAQASIKLQNFTEAVADANRAIELEPS 68 (281)
Q Consensus 37 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~ 68 (281)
.+++.+|.++..+|+|++|++++++++.++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 209
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=0.00031 Score=62.47 Aligned_cols=112 Identities=18% Similarity=0.126 Sum_probs=86.9
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH--------------HcCC------
Q 023550 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAI--------------ELEP------ 67 (281)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al--------------~l~p------ 67 (281)
.|..+|..|||++|+..|+-+...+.-+.+++.++|.|++-+|.|.+|.....+|- +++.
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHH
Confidence 47889999999999999999988777778999999999999999999977655532 1211
Q ss_pred ------CcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHh
Q 023550 68 ------SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (281)
Q Consensus 68 ------~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (281)
+..+-.+.+|..++..-.|++|+..|.+.+.-+|+-..+-..++-|..++.-
T Consensus 143 fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDY 200 (557)
T KOG3785|consen 143 FHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDY 200 (557)
T ss_pred HHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcch
Confidence 1234456677777777889999999999888888777777777777666543
No 210
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.81 E-value=0.0002 Score=56.05 Aligned_cols=72 Identities=24% Similarity=0.236 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhH
Q 023550 35 SAELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF 106 (281)
Q Consensus 35 ~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~---~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~ 106 (281)
.+..++..|...+..|+|.+|+..++......|. -..+.+.+|.+|+..++|++|+..+++.++++|+++.+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 3677899999999999999999999999998875 47799999999999999999999999999999998864
No 211
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=0.00053 Score=64.48 Aligned_cols=90 Identities=18% Similarity=0.156 Sum_probs=77.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-----------------
Q 023550 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS----------------- 68 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~----------------- 68 (281)
|.++.++|+.+..++|+..++ ..++.+..++..+|+.++++++|++|+..|+..++.+.+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 689999999999999999999 356666778899999999999999999999988654321
Q ss_pred --------------cHHHHHHHHHHHHHhhcHHHHHHHHHHhhh
Q 023550 69 --------------MSKAYWRKATACMKLEEYETAKVALEKGAS 98 (281)
Q Consensus 69 --------------~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~ 98 (281)
..+.+|+.+.++...|+|.+|++.++++++
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~ 203 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALR 203 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 456789999999999999999999999943
No 212
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.80 E-value=0.00012 Score=64.51 Aligned_cols=96 Identities=21% Similarity=0.222 Sum_probs=73.2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHcCCC------cHHH
Q 023550 6 EKKAKEAFIDDYFELAYDLYSQAIEISPN--S----AELFADRAQASIKL-QNFTEAVADANRAIELEPS------MSKA 72 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p~--~----~~~~~~~a~~~~~l-~~~~~A~~~~~~al~l~p~------~~~a 72 (281)
+..+-.+++..++++|+.+|.+++...-. + ...+..+|.+|... |++++|++.|.+|+.+... -..+
T Consensus 78 ~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~ 157 (282)
T PF14938_consen 78 YEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAEC 157 (282)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHH
Confidence 34455556666999999999999887221 1 56788899999998 9999999999999986421 2567
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhhhcCC
Q 023550 73 YWRKATACMKLEEYETAKVALEKGASLAP 101 (281)
Q Consensus 73 ~~~~g~~~~~~g~~~~A~~~~~~a~~l~p 101 (281)
+...|.++..+|+|++|+..|++.....-
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l 186 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCL 186 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 78899999999999999999999877543
No 213
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.79 E-value=0.0002 Score=61.52 Aligned_cols=82 Identities=16% Similarity=0.159 Sum_probs=71.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhH---HHHHHH
Q 023550 39 FADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF---TNLIKE 112 (281)
Q Consensus 39 ~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~---~~~l~~ 112 (281)
.++-|.-+++.|+|..|.+.|..-++..|+. +.++|.+|.++|.+|+|++|...|..+.+-.|.++.+ ..-++.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7899999999999999999999999999875 8899999999999999999999999999998887655 455566
Q ss_pred HHHHHHhh
Q 023550 113 CEERIAEE 120 (281)
Q Consensus 113 ~~~~l~~~ 120 (281)
|..++++.
T Consensus 224 ~~~~l~~~ 231 (262)
T COG1729 224 SLGRLGNT 231 (262)
T ss_pred HHHHhcCH
Confidence 66666554
No 214
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.76 E-value=1.7e-05 Score=71.42 Aligned_cols=97 Identities=14% Similarity=0.177 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC----C--cHH
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEP----S--MSK 71 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~------~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p----~--~~~ 71 (281)
.+-+.|+.||-.|+|+.||..-..-|.+.... -.++.++|+||+-+|+|+.|++.|.+++.+.- . -+.
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45567889999999999999877766653322 46789999999999999999999998776542 2 355
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhhcC
Q 023550 72 AYWRKATACMKLEEYETAKVALEKGASLA 100 (281)
Q Consensus 72 a~~~~g~~~~~~g~~~~A~~~~~~a~~l~ 100 (281)
.-|.+|..|.-+.+|++|+.++++-+.+.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIA 305 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIA 305 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999998866543
No 215
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.75 E-value=0.00018 Score=68.67 Aligned_cols=67 Identities=18% Similarity=0.098 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHH
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSK 71 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 71 (281)
.+...|..+...|++++|...|++|+.++| +..+|..+|.++...|++++|++.|.+|++++|.++.
T Consensus 422 ~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 422 IYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 355567778889999999999999999999 5889999999999999999999999999999999875
No 216
>PRK10941 hypothetical protein; Provisional
Probab=97.69 E-value=0.0004 Score=60.53 Aligned_cols=78 Identities=12% Similarity=0.099 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHH
Q 023550 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE 114 (281)
Q Consensus 37 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (281)
..+.++=.+|+..++++.|+.+.++.+.++|+++.-+.-+|.+|.++|.+..|...++..++..|+++........+.
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 446677788999999999999999999999999999999999999999999999999999999999987655544443
No 217
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.65 E-value=0.0012 Score=64.66 Aligned_cols=109 Identities=13% Similarity=0.030 Sum_probs=90.6
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHH
Q 023550 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE 87 (281)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~ 87 (281)
--......++|.+|+....+.++..|+..-+....|..+.++|++++|..+++..-...+++-..+-.+-.+|..+|+++
T Consensus 15 pi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 15 PIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhh
Confidence 34456778899999999999999999999999999999999999999998877777788888888888899999999999
Q ss_pred HHHHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 023550 88 TAKVALEKGASLAPGDSRFTNLIKECEERI 117 (281)
Q Consensus 88 ~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (281)
+|..+|+++...+|+ ......+-.+..+.
T Consensus 95 ~~~~~Ye~~~~~~P~-eell~~lFmayvR~ 123 (932)
T KOG2053|consen 95 EAVHLYERANQKYPS-EELLYHLFMAYVRE 123 (932)
T ss_pred HHHHHHHHHHhhCCc-HHHHHHHHHHHHHH
Confidence 999999999999998 55444444444333
No 218
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.62 E-value=0.0015 Score=50.33 Aligned_cols=86 Identities=16% Similarity=0.230 Sum_probs=73.8
Q ss_pred CHHHHHHHHHHHHHcc---CHHHHHHHHHHHHH-cCCC-cHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHH
Q 023550 35 SAELFADRAQASIKLQ---NFTEAVADANRAIE-LEPS-MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNL 109 (281)
Q Consensus 35 ~~~~~~~~a~~~~~l~---~~~~A~~~~~~al~-l~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~ 109 (281)
.....+++|+++.+.. +..+.+..++..++ -.|. ..++.|.++..++++|+|+.|+.+...+++.+|+|.++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3567889999999875 46677888888886 4443 47799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 023550 110 IKECEERIAEE 120 (281)
Q Consensus 110 l~~~~~~l~~~ 120 (281)
...++.++...
T Consensus 111 k~~ied~itke 121 (149)
T KOG3364|consen 111 KETIEDKITKE 121 (149)
T ss_pred HHHHHHHHhhc
Confidence 99998888775
No 219
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.61 E-value=0.00015 Score=66.73 Aligned_cols=116 Identities=12% Similarity=0.057 Sum_probs=94.1
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHH-HhcCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQA-IEISPN--------SAELFADRAQASIKLQNFTEAVADANRAIEL-------- 65 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~a-l~~~p~--------~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l-------- 65 (281)
..++.+.+..|..|+|..|.+++... +...+. .-.++.++|.+++.++.|..+.-.|.+|++.
T Consensus 241 ~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g 320 (696)
T KOG2471|consen 241 MALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNG 320 (696)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 35678899999999999999998664 333332 1234678999999999999999999999961
Q ss_pred -CC---------CcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHH
Q 023550 66 -EP---------SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118 (281)
Q Consensus 66 -~p---------~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~ 118 (281)
.| ...+..|+.|..|.+.|+.-.|.+||.++......++.+|..++.|--...
T Consensus 321 ~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~ 383 (696)
T KOG2471|consen 321 LKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMAL 383 (696)
T ss_pred CCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 11 246789999999999999999999999999999999999988888765443
No 220
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=0.00023 Score=62.00 Aligned_cols=61 Identities=16% Similarity=0.173 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIE 64 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 64 (281)
...+.|...|+.|+|+.|++.|+.+++...-++.+-++.|.|+++.++|..|+......++
T Consensus 146 ~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 146 GQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred hhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3455556666666666666666666666555555666666666666666666665555544
No 221
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.61 E-value=0.0024 Score=57.52 Aligned_cols=117 Identities=14% Similarity=0.101 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHH
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS-MSKAYWRKATACMK 82 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~-~~~a~~~~g~~~~~ 82 (281)
.....|..-+..|+|.+|.++..++-+..+.....|..-|.+...+|+++.|-.+..++-++.++ ...+...++..+..
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 34556777777788888888888877777776777777777777788888887777777777333 34566777777777
Q ss_pred hhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
.|+|..|......+++..|.++.+.....+++..++.-
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~ 203 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAW 203 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccH
Confidence 78888888777777777777777777766666655544
No 222
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.59 E-value=0.0032 Score=50.68 Aligned_cols=98 Identities=27% Similarity=0.277 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHccCHHHHHHHHHHHHHcCC---CcHHHHHHHHHHH
Q 023550 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQ-ASIKLQNFTEAVADANRAIELEP---SMSKAYWRKATAC 80 (281)
Q Consensus 5 ~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~-~~~~l~~~~~A~~~~~~al~l~p---~~~~a~~~~g~~~ 80 (281)
+...|......++|..++..+..++...+.+.......+. ++...|++..|+..+.+++..++ .....++.++..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (291)
T COG0457 98 LLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALL 177 (291)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHH
Confidence 4445555555666666666666666655554333344444 56666666666666666655554 2344445555555
Q ss_pred HHhhcHHHHHHHHHHhhhcCCC
Q 023550 81 MKLEEYETAKVALEKGASLAPG 102 (281)
Q Consensus 81 ~~~g~~~~A~~~~~~a~~l~p~ 102 (281)
...++++.|+..+.+++...+.
T Consensus 178 ~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 178 EALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred HHhcCHHHHHHHHHHHHhhCcc
Confidence 5666666666666666666655
No 223
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.00013 Score=64.71 Aligned_cols=117 Identities=21% Similarity=0.264 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-----------C--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISP-----------N--------SAELFADRAQASIKLQNFTEAVADANRAIE 64 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p-----------~--------~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 64 (281)
.....|+..++.++|..|..-|.+++..-. + -...+.+.+.+.++++.+..|+.....+++
T Consensus 224 ~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~ 303 (372)
T KOG0546|consen 224 KKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR 303 (372)
T ss_pred hhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc
Confidence 345578889999999999999999877521 1 124466788999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 65 LEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 65 l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
.++....++|+++.++..+.++++|++.+..+....|++..+...+........+.
T Consensus 304 ~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~ 359 (372)
T KOG0546|consen 304 DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQY 359 (372)
T ss_pred cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHH
Confidence 99999999999999999999999999999999999999998877777666655544
No 224
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.50 E-value=0.00067 Score=56.58 Aligned_cols=70 Identities=16% Similarity=0.143 Sum_probs=66.4
Q ss_pred ChhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcH
Q 023550 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS 70 (281)
Q Consensus 1 ma~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~ 70 (281)
|++.+.-.|.-+...|+|+.|.+.|+..++++|..--++.+||.+++--|+|..|.+++.+-.+-+|+++
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence 6777888899999999999999999999999999999999999999999999999999999999999885
No 225
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.42 E-value=0.004 Score=54.81 Aligned_cols=101 Identities=14% Similarity=0.085 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIK-LQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~-l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
.|....+..-+.+..+.|-..|.+|++...-...+|...|..-+. .++...|...|+++++..|.+...|.....-+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 356666777777788999999999987666677888888888666 4566669999999999999999999999999999
Q ss_pred hhcHHHHHHHHHHhhhcCCCCh
Q 023550 83 LEEYETAKVALEKGASLAPGDS 104 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~l~p~~~ 104 (281)
+|+.+.|...|++++..-+.+.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~ 104 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEK 104 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHH
T ss_pred hCcHHHHHHHHHHHHHhcCchh
Confidence 9999999999999998877665
No 226
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.41 E-value=0.0015 Score=52.93 Aligned_cols=55 Identities=22% Similarity=0.303 Sum_probs=45.2
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC-----------HHHHHHHHHHHHHcCCCcH
Q 023550 16 DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQN-----------FTEAVADANRAIELEPSMS 70 (281)
Q Consensus 16 ~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~-----------~~~A~~~~~~al~l~p~~~ 70 (281)
.-+++|+..|++||.++|+..++++.+|++|..++. |++|..+|++|...+|.+.
T Consensus 49 ~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 49 KMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 457889999999999999999999999999988743 8888889999999999884
No 227
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.0018 Score=61.63 Aligned_cols=96 Identities=18% Similarity=0.136 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~------~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g 77 (281)
-+++.|..+|+.++|..+++.|...+...|+| .....+++.||+++.+.+.|++.+..|-+.+|.++-..+...
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 36788999999999999999999999987776 456778999999999999999999999999999999999999
Q ss_pred HHHHHhhcHHHHHHHHHHhhhc
Q 023550 78 TACMKLEEYETAKVALEKGASL 99 (281)
Q Consensus 78 ~~~~~~g~~~~A~~~~~~a~~l 99 (281)
.+...-|.-++|+.+.......
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhh
Confidence 9999999999999998877654
No 228
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.38 E-value=0.00028 Score=40.82 Aligned_cols=31 Identities=32% Similarity=0.490 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhhhcCC
Q 023550 71 KAYWRKATACMKLEEYETAKVALEKGASLAP 101 (281)
Q Consensus 71 ~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p 101 (281)
.+|+.+|.+|..+|++++|..+|+++++++|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4566666666666666666666666666655
No 229
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.36 E-value=0.0033 Score=46.85 Aligned_cols=93 Identities=22% Similarity=0.246 Sum_probs=78.1
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHccC-----------HHHHHHHHHHHHHcCCCcHHHH
Q 023550 8 KAKEAFIDDYFELAYDLYSQAIEISPNSA---ELFADRAQASIKLQN-----------FTEAVADANRAIELEPSMSKAY 73 (281)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~al~~~p~~~---~~~~~~a~~~~~l~~-----------~~~A~~~~~~al~l~p~~~~a~ 73 (281)
+|..++.+||+-+|+++....+..+.++. .++...|.++.++.. .-.++++|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57889999999999999999999877765 667778888877632 4558999999999999998889
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHhhhcC
Q 023550 74 WRKATACMKLEEYETAKVALEKGASLA 100 (281)
Q Consensus 74 ~~~g~~~~~~g~~~~A~~~~~~a~~l~ 100 (281)
|.+|.-+-....|+++..-.++++...
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 999888888888888888888887653
No 230
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.34 E-value=0.0054 Score=50.37 Aligned_cols=98 Identities=13% Similarity=0.041 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 80 (281)
.....+..++..+++++|+..++.++...-+. ..+-.++|.+.+.+|++++|+..++....-+ -.+...-.+|.++
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDil 169 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDIL 169 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHH
Confidence 34677889999999999999999999764443 3456789999999999999998776543221 1234567799999
Q ss_pred HHhhcHHHHHHHHHHhhhcCCC
Q 023550 81 MKLEEYETAKVALEKGASLAPG 102 (281)
Q Consensus 81 ~~~g~~~~A~~~~~~a~~l~p~ 102 (281)
...|+-++|+..|.+++..+++
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 170 LAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHcCchHHHHHHHHHHHHccCC
Confidence 9999999999999999999844
No 231
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.34 E-value=0.00079 Score=58.88 Aligned_cols=76 Identities=21% Similarity=0.241 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA 79 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~ 79 (281)
.....|....++|+.++|..+|..|+.+.|++++++...|......++.-+|-++|-+|+.++|.+.+++.+++..
T Consensus 118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 3456777888999999999999999999999999999999999999999999999999999999999998887654
No 232
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.0018 Score=55.54 Aligned_cols=99 Identities=15% Similarity=0.118 Sum_probs=85.2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHh----c--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 023550 6 EKKAKEAFIDDYFELAYDLYSQAIE----I--SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA 79 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~----~--~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~ 79 (281)
...|...++.||-+.|-.+|+..-+ + -..+.....+.+.+|+..++|.+|...+.+++..|+.++.+.-.+|.|
T Consensus 216 s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALc 295 (366)
T KOG2796|consen 216 SGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALC 295 (366)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHH
Confidence 4568899999999999999984332 2 223346677888888888999999999999999999999999999999
Q ss_pred HHHhhcHHHHHHHHHHhhhcCCCCh
Q 023550 80 CMKLEEYETAKVALEKGASLAPGDS 104 (281)
Q Consensus 80 ~~~~g~~~~A~~~~~~a~~l~p~~~ 104 (281)
+..+|+..+|++.++.++...|...
T Consensus 296 llYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 296 LLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccc
Confidence 9999999999999999999999754
No 233
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.28 E-value=0.0076 Score=48.41 Aligned_cols=93 Identities=27% Similarity=0.370 Sum_probs=77.5
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhhcH
Q 023550 11 EAFIDDYFELAYDLYSQAIEISP---NSAELFADRAQASIKLQNFTEAVADANRAIELEPS-MSKAYWRKATACMKLEEY 86 (281)
Q Consensus 11 ~~~~~~~y~~Al~~y~~al~~~p---~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~-~~~a~~~~g~~~~~~g~~ 86 (281)
.++..|+++.|+..|.+++..++ .....+..++..+...+++..|+..+.+++...+. ....+..++.++...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 68888889999999998888766 35566667777778888899999999998888888 688888888888888888
Q ss_pred HHHHHHHHHhhhcCCCC
Q 023550 87 ETAKVALEKGASLAPGD 103 (281)
Q Consensus 87 ~~A~~~~~~a~~l~p~~ 103 (281)
+.|...+..++...|..
T Consensus 219 ~~a~~~~~~~~~~~~~~ 235 (291)
T COG0457 219 EEALEYYEKALELDPDN 235 (291)
T ss_pred HHHHHHHHHHHhhCccc
Confidence 89998888888888863
No 234
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.26 E-value=0.0026 Score=57.79 Aligned_cols=91 Identities=19% Similarity=0.285 Sum_probs=76.4
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCC-------------C-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC
Q 023550 6 EKKAKEAFIDDYFELAYDLYSQAIEISPN-------------S-----AELFADRAQASIKLQNFTEAVADANRAIELEP 67 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p~-------------~-----~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p 67 (281)
...|..+|++++|..|+-.|..+|++-.. + ..+--.+..||+++++.+.|+...-+.|.++|
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP 259 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP 259 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence 45677888888888888888888887221 1 12345789999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhhcHHHHHHHHHHh
Q 023550 68 SMSKAYWRKATACMKLEEYETAKVALEKG 96 (281)
Q Consensus 68 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 96 (281)
....-+++.|.|...+.+|.+|-..+--+
T Consensus 260 ~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 260 SYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998766554
No 235
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.0047 Score=52.52 Aligned_cols=71 Identities=23% Similarity=0.301 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHH
Q 023550 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR 75 (281)
Q Consensus 5 ~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~ 75 (281)
+.+...++...|+|-++++..+..|..+|.|..+|+.||.++...-+..+|..++..+|+++|....+-.+
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsr 303 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSR 303 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHH
Confidence 46678889999999999999999999999999999999999999999999999999999999987665544
No 236
>PRK10941 hypothetical protein; Provisional
Probab=97.24 E-value=0.0036 Score=54.66 Aligned_cols=76 Identities=16% Similarity=0.121 Sum_probs=68.2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 023550 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (281)
.+.-..+.+.++|+.|+.+.+..+...|+++.-+..||.+|.++|.+..|+.|++..++..|+++.+-.-+.++..
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 3455678899999999999999999999999999999999999999999999999999999999888777665543
No 237
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00052 Score=57.90 Aligned_cols=78 Identities=15% Similarity=0.276 Sum_probs=68.3
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 023550 40 ADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (281)
Q Consensus 40 ~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (281)
-..|..++.-++|..|+..|.+||.++|..+..|.+++.||+++++|+.......++++++|+.......++.+....
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s 91 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQS 91 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhh
Confidence 345677777889999999999999999999999999999999999999999999999999999877666666665443
No 238
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=97.22 E-value=0.002 Score=45.61 Aligned_cols=72 Identities=8% Similarity=0.130 Sum_probs=60.0
Q ss_pred ccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEc--CCCC---eeeeccccccccccCcceEEE-eCcEEEEEEee
Q 023550 179 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDV--PGEE---AYHFQPRLFGKIIPAKCRYEV-LSTKVEIRLAK 250 (281)
Q Consensus 179 ~Qt~~~v~i~v~~k~~~~~~~~v~~~~~~l~~~~~~--~~~~---~~~~~~~L~~~I~p~~s~~~v-~~~kiei~L~K 250 (281)
+.+++.+.|.+-++|+.+++++|++..+.|+|+-.. ..+. .|.=.+.|...|+++.-+.++ ..+.+.|++.+
T Consensus 4 ~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~~ 81 (81)
T cd06479 4 KTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKARR 81 (81)
T ss_pred cCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEecC
Confidence 467889999999999999999999999999998643 2222 466677899999999999998 78899999864
No 239
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.18 E-value=0.0036 Score=56.41 Aligned_cols=110 Identities=14% Similarity=0.095 Sum_probs=88.2
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcH
Q 023550 7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY 86 (281)
Q Consensus 7 ~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~ 86 (281)
..+.-+.+.|++++|.+....+++..-+.- +... .-..+.+++..=++.+++.++..|+++..++.+|..|++.+.|
T Consensus 268 ~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~--~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w 344 (400)
T COG3071 268 AYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRL--IPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLW 344 (400)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHH--HhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHH
Confidence 456667889999999999999999855433 2222 2233568888889999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 87 ETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 87 ~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
.+|..+|+.++...|+.. ...+++.+..++++.
T Consensus 345 ~kA~~~leaAl~~~~s~~-~~~~la~~~~~~g~~ 377 (400)
T COG3071 345 GKASEALEAALKLRPSAS-DYAELADALDQLGEP 377 (400)
T ss_pred HHHHHHHHHHHhcCCChh-hHHHHHHHHHHcCCh
Confidence 999999999999998754 567777777766554
No 240
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=97.18 E-value=0.0018 Score=45.98 Aligned_cols=68 Identities=19% Similarity=0.194 Sum_probs=57.4
Q ss_pred CeEEEEEEecCCCCcceEEEEeeeEEEEEEEcCCC--------CeeeeccccccccccCcceEEEeC-cEEEEEEee
Q 023550 183 EEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGE--------EAYHFQPRLFGKIIPAKCRYEVLS-TKVEIRLAK 250 (281)
Q Consensus 183 ~~v~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~~~--------~~~~~~~~L~~~I~p~~s~~~v~~-~kiei~L~K 250 (281)
+.+.|.+.++|+.+++++|.+..+.|.|+...... ..|.-.+.|...|+++..+.++.. +.++|++.|
T Consensus 7 ~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 7 EKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred eeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence 57889999999999999999999999999643211 256677889999999999999998 899999876
No 241
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.17 E-value=0.00076 Score=38.94 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCC
Q 023550 38 LFADRAQASIKLQNFTEAVADANRAIELEP 67 (281)
Q Consensus 38 ~~~~~a~~~~~l~~~~~A~~~~~~al~l~p 67 (281)
+|+.+|.+|..+|++++|+..++++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455666666666666666666666666655
No 242
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.15 E-value=0.0022 Score=49.36 Aligned_cols=65 Identities=25% Similarity=0.192 Sum_probs=59.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCC
Q 023550 39 FADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD 103 (281)
Q Consensus 39 ~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~ 103 (281)
+-..|.++...|+.+.|++.|.+++.+.|..+.+|-++++++...|+.++|+..+.+++++....
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~ 110 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ 110 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence 44567788888999999999999999999999999999999999999999999999999997654
No 243
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.13 E-value=0.00098 Score=37.99 Aligned_cols=31 Identities=26% Similarity=0.339 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhhcCCC
Q 023550 72 AYWRKATACMKLEEYETAKVALEKGASLAPG 102 (281)
Q Consensus 72 a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~ 102 (281)
+++++|.+++.+|++++|+..|++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5667777777777777777777777776665
No 244
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=97.12 E-value=0.0026 Score=45.60 Aligned_cols=73 Identities=8% Similarity=0.099 Sum_probs=60.7
Q ss_pred cccccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcCC----C----CeeeeccccccccccCcceEEEe-CcEEEE
Q 023550 176 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG----E----EAYHFQPRLFGKIIPAKCRYEVL-STKVEI 246 (281)
Q Consensus 176 ~~w~Qt~~~v~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~~----~----~~~~~~~~L~~~I~p~~s~~~v~-~~kiei 246 (281)
-+++.+++.+.|.+.++|+.+++++|++..+.|.|+-.... + ..|.=.+.|...|++++.+.+.. ++.+.|
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~I 82 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTV 82 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEEE
Confidence 36889999999999999999999999999999999864321 1 12555678999999999999997 888888
Q ss_pred EE
Q 023550 247 RL 248 (281)
Q Consensus 247 ~L 248 (281)
+|
T Consensus 83 ~l 84 (86)
T cd06475 83 EA 84 (86)
T ss_pred Ee
Confidence 76
No 245
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.11 E-value=0.039 Score=44.09 Aligned_cols=109 Identities=15% Similarity=-0.008 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
..++.........++.+++..++...--+.|+.+.+-..-|..++..|+|.+|+..++.+....|..+.+--.++.|++.
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 35677788888999999999999999899999999999999999999999999999999999999999888999999999
Q ss_pred hhcHHHHHHHHHHhhhcCCCChhHHHHHHHH
Q 023550 83 LEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (281)
+|+..= ..+-..+++..+ ++........+
T Consensus 91 ~~D~~W-r~~A~evle~~~-d~~a~~Lv~~L 119 (160)
T PF09613_consen 91 LGDPSW-RRYADEVLESGA-DPDARALVRAL 119 (160)
T ss_pred cCChHH-HHHHHHHHhcCC-ChHHHHHHHHH
Confidence 998641 111222333333 45554444444
No 246
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=97.10 E-value=0.0027 Score=45.50 Aligned_cols=72 Identities=10% Similarity=0.130 Sum_probs=59.3
Q ss_pred ccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcC---CCC-----eeeeccccccccccCcceEEE-eCcEEEEEEe
Q 023550 179 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GEE-----AYHFQPRLFGKIIPAKCRYEV-LSTKVEIRLA 249 (281)
Q Consensus 179 ~Qt~~~v~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~---~~~-----~~~~~~~L~~~I~p~~s~~~v-~~~kiei~L~ 249 (281)
+.+++.+.|.+.++|+.+++++|++..+.|.|+-... .+. .|.=.+.|...|++++-+.++ .++.+.|+|.
T Consensus 6 ~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~P 85 (86)
T cd06497 6 RSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTFSGP 85 (86)
T ss_pred EEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEEEec
Confidence 4678999999999999999999999999999986421 111 244466899999999999999 6889999997
Q ss_pred e
Q 023550 250 K 250 (281)
Q Consensus 250 K 250 (281)
|
T Consensus 86 K 86 (86)
T cd06497 86 K 86 (86)
T ss_pred C
Confidence 6
No 247
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.08 E-value=0.0045 Score=48.63 Aligned_cols=61 Identities=21% Similarity=0.191 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIE 64 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 64 (281)
.+...+..+...|+|++|+..+.+++..+|.+-.++..+..+|..+|++.+|+..|+++.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3455677788999999999999999999999999999999999999999999999988754
No 248
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.016 Score=49.86 Aligned_cols=80 Identities=20% Similarity=0.177 Sum_probs=53.8
Q ss_pred HHHHHHHHHHc----cCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHH
Q 023550 39 FADRAQASIKL----QNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE 114 (281)
Q Consensus 39 ~~~~a~~~~~l----~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (281)
+.++|.+++++ +++.+|.-.|+..-...+..+......+.|+.++|+|++|...++.++..+++++++...+--+.
T Consensus 172 LtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a 251 (299)
T KOG3081|consen 172 LTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLA 251 (299)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 34455555443 34555555555555544455667777888888999999999999999999998888766666554
Q ss_pred HHHH
Q 023550 115 ERIA 118 (281)
Q Consensus 115 ~~l~ 118 (281)
..++
T Consensus 252 ~~~G 255 (299)
T KOG3081|consen 252 LHLG 255 (299)
T ss_pred HHhC
Confidence 4333
No 249
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=97.07 E-value=0.0033 Score=44.86 Aligned_cols=72 Identities=8% Similarity=0.101 Sum_probs=58.9
Q ss_pred cCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcCC---CC-----eeeeccccccccccCcceEEEe-CcEEEEEEee
Q 023550 180 QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG---EE-----AYHFQPRLFGKIIPAKCRYEVL-STKVEIRLAK 250 (281)
Q Consensus 180 Qt~~~v~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~~---~~-----~~~~~~~L~~~I~p~~s~~~v~-~~kiei~L~K 250 (281)
-+++.+.|.+-++|+.+++++|.+..+.|+|+..... +. .|.=.+.|...|+++.-+.+.. ++.+.|+|.|
T Consensus 4 ~~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~lPk 83 (84)
T cd06498 4 LEKDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCGPR 83 (84)
T ss_pred eCCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEEEeC
Confidence 3578889999999999999999999999999864321 11 1555668999999999999995 8899999987
Q ss_pred c
Q 023550 251 A 251 (281)
Q Consensus 251 ~ 251 (281)
+
T Consensus 84 ~ 84 (84)
T cd06498 84 K 84 (84)
T ss_pred C
Confidence 4
No 250
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.07 E-value=0.0065 Score=57.45 Aligned_cols=104 Identities=22% Similarity=0.190 Sum_probs=84.0
Q ss_pred hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHhhcHHHHH
Q 023550 15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS----MSKAYWRKATACMKLEEYETAK 90 (281)
Q Consensus 15 ~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~----~~~a~~~~g~~~~~~g~~~~A~ 90 (281)
..+.+.|.+++.......|+...+++..|+.+...|+.++|++.+++++..... ..-+++.+|.++..+.+|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 557788999999999999999999999999999999999999999998854432 3558899999999999999999
Q ss_pred HHHHHhhhcCCCChhHH-HHHHHHHHHHH
Q 023550 91 VALEKGASLAPGDSRFT-NLIKECEERIA 118 (281)
Q Consensus 91 ~~~~~a~~l~p~~~~~~-~~l~~~~~~l~ 118 (281)
.+|.+..+.+.-...+. ...+-|...++
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~ 354 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLMLG 354 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhc
Confidence 99999998766544443 33333443333
No 251
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.05 E-value=0.0039 Score=40.25 Aligned_cols=43 Identities=21% Similarity=0.185 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 023550 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA 79 (281)
Q Consensus 37 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~ 79 (281)
+.++.+|..++++|+|.+|...++.+|+++|++..+...+..+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 4677888889999999999999999999999887776655444
No 252
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.05 E-value=0.0018 Score=58.84 Aligned_cols=96 Identities=17% Similarity=0.167 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc----CCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC------CcHH
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEI----SPNS--AELFADRAQASIKLQNFTEAVADANRAIELEP------SMSK 71 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~----~p~~--~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p------~~~~ 71 (281)
++-+.|+.+.-.|+++.|+++|...+.+ .... +...+.+|+.|..+++|+.|+.+..+-+.+.. ....
T Consensus 237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~R 316 (639)
T KOG1130|consen 237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELR 316 (639)
T ss_pred hhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 4556799999999999999999988765 2222 45567899999999999999999988776543 3467
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhhc
Q 023550 72 AYWRKATACMKLEEYETAKVALEKGASL 99 (281)
Q Consensus 72 a~~~~g~~~~~~g~~~~A~~~~~~a~~l 99 (281)
+++.+|.++-.+|+.++|+.+....+++
T Consensus 317 acwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 317 ACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999888777654
No 253
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.04 E-value=0.006 Score=57.65 Aligned_cols=97 Identities=15% Similarity=0.080 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-cHHHHHHHHHH
Q 023550 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAIELEPS-MSKAYWRKATA 79 (281)
Q Consensus 5 ~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~----~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~-~~~a~~~~g~~ 79 (281)
++..|..+...|+.++|++.|++++....+- .-.++.+|.|+..+++|++|...+.+.++.+.- .+-..|..|.|
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 4678999999999999999999988543222 356788999999999999999999999987654 34556668999
Q ss_pred HHHhhcH-------HHHHHHHHHhhhcCC
Q 023550 80 CMKLEEY-------ETAKVALEKGASLAP 101 (281)
Q Consensus 80 ~~~~g~~-------~~A~~~~~~a~~l~p 101 (281)
+..+|+. ++|...|.++..+-.
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 9999999 888888888766543
No 254
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.00 E-value=0.019 Score=50.60 Aligned_cols=108 Identities=17% Similarity=0.200 Sum_probs=85.6
Q ss_pred HHHHHHHHHH-hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcH---HHHHHHHHHH
Q 023550 5 LEKKAKEAFI-DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS---KAYWRKATAC 80 (281)
Q Consensus 5 ~~~~g~~~~~-~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~---~a~~~~g~~~ 80 (281)
|...|..-+. .++.+.|...|+.+++..|.+..+|......++.+++.+.|...|++++..-+... ..|-....--
T Consensus 38 y~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE 117 (280)
T PF05843_consen 38 YVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFE 117 (280)
T ss_dssp HHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 4455666455 67777799999999999999999999999999999999999999999998876554 5677777777
Q ss_pred HHhhcHHHHHHHHHHhhhcCCCChhHHHHHHH
Q 023550 81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112 (281)
Q Consensus 81 ~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 112 (281)
...|+.+......+++.+..|.+..+.....+
T Consensus 118 ~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~r 149 (280)
T PF05843_consen 118 SKYGDLESVRKVEKRAEELFPEDNSLELFSDR 149 (280)
T ss_dssp HHHS-HHHHHHHHHHHHHHTTTS-HHHHHHCC
T ss_pred HHcCCHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 78899999999999999999987665554443
No 255
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.99 E-value=0.049 Score=46.74 Aligned_cols=115 Identities=16% Similarity=0.098 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHc--------cCHHHHHHHHHHHHHcCCCc--
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA---ELFADRAQASIKL--------QNFTEAVADANRAIELEPSM-- 69 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~---~~~~~~a~~~~~l--------~~~~~A~~~~~~al~l~p~~-- 69 (281)
+.+...+.++++.++|++|+...++-+.+.|+++ -+++.+|.+++.. .-..+|+..++..+..-|+.
T Consensus 72 qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Y 151 (254)
T COG4105 72 QAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRY 151 (254)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcc
Confidence 3567889999999999999999999999988874 5577788887765 23567888899999998863
Q ss_pred -------------HHHH--HHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 023550 70 -------------SKAY--WRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (281)
Q Consensus 70 -------------~~a~--~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (281)
..+. +..|.-|.+.|.|-.|..-++..++-.|+-......+..+....
T Consensus 152 a~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY 214 (254)
T COG4105 152 APDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAY 214 (254)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence 1122 33577788899999999999999999887766554444444433
No 256
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.023 Score=48.95 Aligned_cols=90 Identities=13% Similarity=0.186 Sum_probs=78.1
Q ss_pred hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHH-HH
Q 023550 15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKV-AL 93 (281)
Q Consensus 15 ~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~-~~ 93 (281)
.+.+++|.-+|.+.-+..+-.+..+...|.|++.+++|++|...++.+|..++.+++.+.++-.+-..+|...++.. .+
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 34689999999998887777888999999999999999999999999999999999999999999999998766654 55
Q ss_pred HHhhhcCCCCh
Q 023550 94 EKGASLAPGDS 104 (281)
Q Consensus 94 ~~a~~l~p~~~ 104 (281)
.+....+|+.+
T Consensus 266 ~QLk~~~p~h~ 276 (299)
T KOG3081|consen 266 SQLKLSHPEHP 276 (299)
T ss_pred HHHHhcCCcch
Confidence 56666677765
No 257
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.97 E-value=0.024 Score=46.42 Aligned_cols=116 Identities=19% Similarity=0.127 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPN--SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~--~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (281)
.+...+++.|..+++..|...++...+.+|. .++.....|.+|..+|++++|...++.++.-.|+. .+..+.+.-+.
T Consensus 126 ~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La 204 (251)
T COG4700 126 MLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLA 204 (251)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHH
Confidence 4677899999999999999999999998876 46778888999999999999999999999998865 67788889999
Q ss_pred HhhcHHHHHHHHHHhh----hcCCCC-hhHHHHHHHHHHHHHhh
Q 023550 82 KLEEYETAKVALEKGA----SLAPGD-SRFTNLIKECEERIAEE 120 (281)
Q Consensus 82 ~~g~~~~A~~~~~~a~----~l~p~~-~~~~~~l~~~~~~l~~~ 120 (281)
.+|+..+|...+.... +-.|.- ...+.|+..+..++++.
T Consensus 205 ~qgr~~ea~aq~~~v~d~~~r~~~H~rkh~reW~~~A~~~~~qs 248 (251)
T COG4700 205 KQGRLREANAQYVAVVDTAKRSRPHYRKHHREWIKTANERLKQS 248 (251)
T ss_pred HhcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhh
Confidence 9998888876655443 333322 23467888877776654
No 258
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0097 Score=52.65 Aligned_cols=84 Identities=17% Similarity=0.207 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHH
Q 023550 36 AELFADRAQASIKLQNFTEAVADANRAIELEPS----MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIK 111 (281)
Q Consensus 36 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~----~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~ 111 (281)
+.-|-.-|+-|++.++|..|...|...|...-. ++..|.++|-|.+.+|+|..|+..+.+++.++|.+..+...-+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 456778899999999999999999999987543 4668899999999999999999999999999999887666666
Q ss_pred HHHHHHHh
Q 023550 112 ECEERIAE 119 (281)
Q Consensus 112 ~~~~~l~~ 119 (281)
+|.-.|+.
T Consensus 161 kc~~eLe~ 168 (390)
T KOG0551|consen 161 KCLLELER 168 (390)
T ss_pred HHHHHHHH
Confidence 66666665
No 259
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.90 E-value=0.019 Score=53.18 Aligned_cols=101 Identities=15% Similarity=0.176 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
.|...|.--..+++++.|-..|.+||..+..+..+|+..+.+-++.+...-|...+++|+.+-|.--..||.....-..+
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEML 154 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 35556666677899999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred hcHHHHHHHHHHhhhcCCCCh
Q 023550 84 EEYETAKVALEKGASLAPGDS 104 (281)
Q Consensus 84 g~~~~A~~~~~~a~~l~p~~~ 104 (281)
|+...|.+.|++-....|+..
T Consensus 155 gNi~gaRqiferW~~w~P~eq 175 (677)
T KOG1915|consen 155 GNIAGARQIFERWMEWEPDEQ 175 (677)
T ss_pred cccHHHHHHHHHHHcCCCcHH
Confidence 999999999999999999744
No 260
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.89 E-value=0.0022 Score=35.23 Aligned_cols=32 Identities=31% Similarity=0.473 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCC
Q 023550 71 KAYWRKATACMKLEEYETAKVALEKGASLAPG 102 (281)
Q Consensus 71 ~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~ 102 (281)
.+++.+|.++..+|+++.|..+|+++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35566666666666666666666666666553
No 261
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.89 E-value=0.0061 Score=57.64 Aligned_cols=102 Identities=15% Similarity=0.104 Sum_probs=91.0
Q ss_pred HhcCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHH
Q 023550 14 IDDYFELAYDLYSQAIEISPNSA-ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVA 92 (281)
Q Consensus 14 ~~~~y~~Al~~y~~al~~~p~~~-~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~ 92 (281)
..|+...|+.++..|+...|... .-..++|+++++.+-.-.|-..+.+++.+....+..+|..|.++..+.+.+.|++.
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 46889999999999999888653 44789999999999999999999999999988899999999999999999999999
Q ss_pred HHHhhhcCCCChhHHHHHHHHHH
Q 023550 93 LEKGASLAPGDSRFTNLIKECEE 115 (281)
Q Consensus 93 ~~~a~~l~p~~~~~~~~l~~~~~ 115 (281)
|+.|+.++|++.....-+..+..
T Consensus 699 ~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 699 FRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999988776666544
No 262
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.86 E-value=0.016 Score=53.81 Aligned_cols=91 Identities=13% Similarity=0.137 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhc-HHHHHHHHHHhh
Q 023550 19 ELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE-YETAKVALEKGA 97 (281)
Q Consensus 19 ~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~-~~~A~~~~~~a~ 97 (281)
..-..+|+.|+...+.|..+|.+......+.+.+.+--..|.+++..+|+++..|...|.-.+..+. .+.|.+.|.+++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 4557789999999999999999988877787889999999999999999999999999988888876 999999999999
Q ss_pred hcCCCChhHHHH
Q 023550 98 SLAPGDSRFTNL 109 (281)
Q Consensus 98 ~l~p~~~~~~~~ 109 (281)
+.+|+++.++..
T Consensus 168 R~npdsp~Lw~e 179 (568)
T KOG2396|consen 168 RFNPDSPKLWKE 179 (568)
T ss_pred hcCCCChHHHHH
Confidence 999999987544
No 263
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=96.85 E-value=0.0055 Score=43.56 Aligned_cols=71 Identities=14% Similarity=0.146 Sum_probs=57.7
Q ss_pred cCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcC---CC-----CeeeeccccccccccCcceEEE-eCcEEEEEEee
Q 023550 180 QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GE-----EAYHFQPRLFGKIIPAKCRYEV-LSTKVEIRLAK 250 (281)
Q Consensus 180 Qt~~~v~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~---~~-----~~~~~~~~L~~~I~p~~s~~~v-~~~kiei~L~K 250 (281)
.+++.+.|.+-++|+.+++++|++..+.|.|+.... .+ ..|.=.+.|...|+++..+.++ .++.+.|++.|
T Consensus 4 ~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~~PK 83 (83)
T cd06478 4 LDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTISGPR 83 (83)
T ss_pred ecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEEEecC
Confidence 467889999999999999999999999999986432 11 1255567899999999999998 48899999876
No 264
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.82 E-value=0.0027 Score=36.11 Aligned_cols=30 Identities=17% Similarity=0.266 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 023550 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPN 34 (281)
Q Consensus 5 ~~~~g~~~~~~~~y~~Al~~y~~al~~~p~ 34 (281)
++..|..++..|++++|+..|++++...|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444455555555555555555555444443
No 265
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=0.022 Score=49.03 Aligned_cols=116 Identities=12% Similarity=0.105 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH----cCC--CcHHHHHHHH
Q 023550 5 LEKKAKEAFIDDYFELAYDLYSQAIEIS-PNSAELFADRAQASIKLQNFTEAVADANRAIE----LEP--SMSKAYWRKA 77 (281)
Q Consensus 5 ~~~~g~~~~~~~~y~~Al~~y~~al~~~-p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~----l~p--~~~~a~~~~g 77 (281)
.+...+.+.-.|.|.-.+..|.+.++.+ |.++.+...+|...+..|+.+.|...++++-+ ++. ....++..++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3455677788999999999999999988 67888999999999999999999999985443 332 3455777888
Q ss_pred HHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 78 TACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 78 ~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
.+|...++|..|...|.+++..|+.++.+-...+-|..-+++.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l 302 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKL 302 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHH
Confidence 8899999999999999999999999887655555555444443
No 266
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.78 E-value=0.0022 Score=59.21 Aligned_cols=78 Identities=21% Similarity=0.253 Sum_probs=70.9
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023550 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
-+++.++++.++|..|+.-+.+|++.+|....+|+++|.+.+++++|.+|+.+++....+.|++..+......|-..-
T Consensus 42 anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~v 119 (476)
T KOG0376|consen 42 ANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIV 119 (476)
T ss_pred chhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHH
Confidence 356788999999999999999999999999999999999999999999999999999999999988877776665544
No 267
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.77 E-value=0.02 Score=56.86 Aligned_cols=91 Identities=13% Similarity=0.074 Sum_probs=68.0
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcH
Q 023550 7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY 86 (281)
Q Consensus 7 ~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~ 86 (281)
.....+.+.|++++|.+.+.+. ...| +...|..+..++...|+++.|...+++.+.+.|.+...|..++.+|...|++
T Consensus 467 ~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~ 544 (697)
T PLN03081 467 CMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQ 544 (697)
T ss_pred hHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCH
Confidence 3455667778888888777653 2233 3455777777777888888888888888888888877888888888888888
Q ss_pred HHHHHHHHHhhhc
Q 023550 87 ETAKVALEKGASL 99 (281)
Q Consensus 87 ~~A~~~~~~a~~l 99 (281)
++|...++...+.
T Consensus 545 ~~A~~v~~~m~~~ 557 (697)
T PLN03081 545 AEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHHHc
Confidence 8888888776544
No 268
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.74 E-value=0.0057 Score=54.75 Aligned_cols=95 Identities=17% Similarity=0.153 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC----------
Q 023550 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPS---------- 68 (281)
Q Consensus 5 ~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~------~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~---------- 68 (281)
....|+++.-.+.|+++++.|+.|++..-++ -.++..+|..+-.++++++|+-+..+|+.+-..
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 4557889999999999999999999874332 356888999999999999999999999876432
Q ss_pred cHHHHHHHHHHHHHhhcHHHHHHHHHHhhhc
Q 023550 69 MSKAYWRKATACMKLEEYETAKVALEKGASL 99 (281)
Q Consensus 69 ~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l 99 (281)
...++|.+++++..+|+..+|.++.+++.++
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 2457888999999999999999999988665
No 269
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=96.72 E-value=0.013 Score=42.36 Aligned_cols=73 Identities=12% Similarity=0.172 Sum_probs=56.9
Q ss_pred cccccC-CCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcCC--------------CCeeeeccccccccccCcceEEEe
Q 023550 176 HEFYQK-PEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG--------------EEAYHFQPRLFGKIIPAKCRYEVL 240 (281)
Q Consensus 176 ~~w~Qt-~~~v~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~~--------------~~~~~~~~~L~~~I~p~~s~~~v~ 240 (281)
++=+++ ++...|.+.++|+.+++++|.+..+.|.|...... -..|.-.+.|...|+.+ +.+..
T Consensus 3 ~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~~~ 80 (90)
T cd06470 3 YNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GAELE 80 (90)
T ss_pred eeeEEcCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--eeEEe
Confidence 344565 48999999999999999999999999999853211 12466677888889886 67888
Q ss_pred CcEEEEEEee
Q 023550 241 STKVEIRLAK 250 (281)
Q Consensus 241 ~~kiei~L~K 250 (281)
++.+.|+|.+
T Consensus 81 ~GvL~I~l~~ 90 (90)
T cd06470 81 NGLLTIDLER 90 (90)
T ss_pred CCEEEEEEEC
Confidence 9999999864
No 270
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.72 E-value=0.03 Score=51.94 Aligned_cols=106 Identities=20% Similarity=0.229 Sum_probs=77.8
Q ss_pred HhcCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHH
Q 023550 14 IDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETA 89 (281)
Q Consensus 14 ~~~~y~~Al~~y~~al~~~p~~----~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A 89 (281)
...|.+.+-..|..+|++-|+. +.+|+..|...++..+...|...+-.||...|.+ +.+-..-..-.++++++..
T Consensus 378 e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRc 456 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRC 456 (677)
T ss_pred HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHH
Confidence 4567777888888888887775 4667777777777778888888888888887765 3444444556667778888
Q ss_pred HHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 90 KVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 90 ~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
...|++.++..|.+-..|...+.++..|++.
T Consensus 457 RkLYEkfle~~Pe~c~~W~kyaElE~~Lgdt 487 (677)
T KOG1915|consen 457 RKLYEKFLEFSPENCYAWSKYAELETSLGDT 487 (677)
T ss_pred HHHHHHHHhcChHhhHHHHHHHHHHHHhhhH
Confidence 8888888888887777777777777766665
No 271
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.69 E-value=0.011 Score=57.58 Aligned_cols=115 Identities=22% Similarity=0.353 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHc--cCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKL--QNFTEAVADANRAIELEPSMSKAYWRK 76 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~----~~~~~~~a~~~~~l--~~~~~A~~~~~~al~l~p~~~~a~~~~ 76 (281)
..+...|+.+++.++|.+|...|..++..-|.+ .....+++.|+..+ ++|..++..+.-++...|....+++.+
T Consensus 54 ~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r 133 (748)
T KOG4151|consen 54 LELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKR 133 (748)
T ss_pred HHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhh
Confidence 356778999999999999999999999987743 45667788887765 699999999999999999999999999
Q ss_pred HHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 023550 77 ATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (281)
Q Consensus 77 g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (281)
+.+|..++.++-|.+.+.-....+|++..+.....+.+..+
T Consensus 134 ~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll 174 (748)
T KOG4151|consen 134 ARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL 174 (748)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 99999999999999998888889999876666555665555
No 272
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.69 E-value=0.021 Score=41.24 Aligned_cols=48 Identities=13% Similarity=0.166 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc
Q 023550 22 YDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM 69 (281)
Q Consensus 22 l~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 69 (281)
+..+.+.+..+|++..+.+.+|..++..|++++|++.+-.+++.++++
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 455667777777777777777777777777777777777777776654
No 273
>PRK10743 heat shock protein IbpA; Provisional
Probab=96.66 E-value=0.014 Score=45.60 Aligned_cols=75 Identities=11% Similarity=0.119 Sum_probs=61.3
Q ss_pred Ccccc-cCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcC---CCC----------eeeeccccccccccCcceEEEe
Q 023550 175 RHEFY-QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GEE----------AYHFQPRLFGKIIPAKCRYEVL 240 (281)
Q Consensus 175 r~~w~-Qt~~~v~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~---~~~----------~~~~~~~L~~~I~p~~s~~~v~ 240 (281)
.++-+ .+++.+.|.+-++|+.++++.|.+..+.|+|+.... .+. .|.=.+.|...|++++ .+..
T Consensus 36 ~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~--A~~~ 113 (137)
T PRK10743 36 PYNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRG--ANLV 113 (137)
T ss_pred cEEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCc--CEEe
Confidence 47788 489999999999999999999999999999986421 111 3445667999999983 7888
Q ss_pred CcEEEEEEeec
Q 023550 241 STKVEIRLAKA 251 (281)
Q Consensus 241 ~~kiei~L~K~ 251 (281)
++.+.|+|.|.
T Consensus 114 dGVL~I~lPK~ 124 (137)
T PRK10743 114 NGLLYIDLERV 124 (137)
T ss_pred CCEEEEEEeCC
Confidence 99999999996
No 274
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.65 E-value=0.048 Score=53.98 Aligned_cols=101 Identities=17% Similarity=0.055 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhh
Q 023550 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84 (281)
Q Consensus 5 ~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g 84 (281)
..-+|..+++.|.+++|..+++..-...+++-..+..+-.||..++++++|...|++++..+|. -+-.+.+-.+|.+-+
T Consensus 46 ~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~ 124 (932)
T KOG2053|consen 46 KVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREK 124 (932)
T ss_pred HHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHH
Confidence 3457889999999999998888877778888888899999999999999999999999999999 788899999999999
Q ss_pred cHHHHHHHHHHhhhcCCCChhH
Q 023550 85 EYETAKVALEKGASLAPGDSRF 106 (281)
Q Consensus 85 ~~~~A~~~~~~a~~l~p~~~~~ 106 (281)
.|.+-.+.--+..+..|+++.+
T Consensus 125 ~yk~qQkaa~~LyK~~pk~~yy 146 (932)
T KOG2053|consen 125 SYKKQQKAALQLYKNFPKRAYY 146 (932)
T ss_pred HHHHHHHHHHHHHHhCCcccch
Confidence 9987777777777788877643
No 275
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.60 E-value=0.033 Score=46.98 Aligned_cols=91 Identities=18% Similarity=0.082 Sum_probs=68.0
Q ss_pred HhcCHHHHHHHHHHHHhc----CCCC---HHHHHHHHHHHHHccCHHH-------HHHHHHHHHHcCC------CcHHHH
Q 023550 14 IDDYFELAYDLYSQAIEI----SPNS---AELFADRAQASIKLQNFTE-------AVADANRAIELEP------SMSKAY 73 (281)
Q Consensus 14 ~~~~y~~Al~~y~~al~~----~p~~---~~~~~~~a~~~~~l~~~~~-------A~~~~~~al~l~p------~~~~a~ 73 (281)
....+++|++.|.-|+.. .... +.+++.+|.+|..+|+-+. |++.|.+++.... +.....
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 345788899888887664 2122 5778889999999988444 5555555554432 236789
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHhhhcCCCCh
Q 023550 74 WRKATACMKLEEYETAKVALEKGASLAPGDS 104 (281)
Q Consensus 74 ~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~ 104 (281)
|.+|..++++|++++|..+|.+.+.......
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999999998765554
No 276
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.59 E-value=0.024 Score=57.76 Aligned_cols=93 Identities=15% Similarity=0.012 Sum_probs=76.4
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC------cHHHHHH
Q 023550 7 KKAKEAFIDDYFELAYDLYSQAIEISPNS-----AELFADRAQASIKLQNFTEAVADANRAIELEPS------MSKAYWR 75 (281)
Q Consensus 7 ~~g~~~~~~~~y~~Al~~y~~al~~~p~~-----~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~------~~~a~~~ 75 (281)
..|..++..|+|++|..++.+++...+.. ..++..+|.++...|++++|+..+.+++.+... ...++..
T Consensus 457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~ 536 (903)
T PRK04841 457 LRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQ 536 (903)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 45777889999999999999999854443 234567889999999999999999999976432 1346677
Q ss_pred HHHHHHHhhcHHHHHHHHHHhhhc
Q 023550 76 KATACMKLEEYETAKVALEKGASL 99 (281)
Q Consensus 76 ~g~~~~~~g~~~~A~~~~~~a~~l 99 (281)
+|.+++..|+++.|...+.+++.+
T Consensus 537 la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 537 QSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 899999999999999999998875
No 277
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.55 E-value=0.089 Score=44.62 Aligned_cols=114 Identities=20% Similarity=0.171 Sum_probs=80.7
Q ss_pred HHHHHHHHHHh-cCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc------HH
Q 023550 5 LEKKAKEAFID-DYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSM------SK 71 (281)
Q Consensus 5 ~~~~g~~~~~~-~~y~~Al~~y~~al~~~p~~------~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~------~~ 71 (281)
.+..|..|-.. .++++||.+|.++-+..... -..++..|...-.+++|.+|+..|++..+..-++ .+
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~K 195 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAK 195 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHH
Confidence 34556666655 78999999999997764332 2446667777777899999999999887655443 33
Q ss_pred -HHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhH--HHHHHHHHHHHH
Q 023550 72 -AYWRKATACMKLEEYETAKVALEKGASLAPGDSRF--TNLIKECEERIA 118 (281)
Q Consensus 72 -a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~--~~~l~~~~~~l~ 118 (281)
.++..|.|++...+.-.+...+++..+++|.-... -..+..+...+.
T Consensus 196 dyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aie 245 (288)
T KOG1586|consen 196 DYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIE 245 (288)
T ss_pred HHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHh
Confidence 44556788888899999999999999999975433 233444444333
No 278
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.55 E-value=0.012 Score=51.78 Aligned_cols=74 Identities=18% Similarity=0.099 Sum_probs=64.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHH
Q 023550 39 FADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112 (281)
Q Consensus 39 ~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 112 (281)
-.+.|.-..+.|+.++|...+..|+.++|+++.++..+|+.....++.-+|..||-+|+.+.|.+..+.....+
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 34555556678999999999999999999999999999999999999999999999999999999876555443
No 279
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.53 E-value=0.0045 Score=33.86 Aligned_cols=31 Identities=29% Similarity=0.506 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCC
Q 023550 38 LFADRAQASIKLQNFTEAVADANRAIELEPS 68 (281)
Q Consensus 38 ~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~ 68 (281)
++..+|.++..+++++.|+..++++++++|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4556666666666666666666666665553
No 280
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.52 E-value=0.0041 Score=52.33 Aligned_cols=59 Identities=27% Similarity=0.296 Sum_probs=42.0
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc
Q 023550 11 EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM 69 (281)
Q Consensus 11 ~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 69 (281)
...+.+|++.|.++|.+++.+.|+....|.++|....+.|+++.|.+.|++.++++|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 44566677777777777777777777777777777777777777777777777777655
No 281
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=96.52 E-value=0.015 Score=41.29 Aligned_cols=70 Identities=16% Similarity=0.127 Sum_probs=56.2
Q ss_pred CCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcC---CCC-----eeeeccccccccccCcceEEEe-CcEEEEEEee
Q 023550 181 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GEE-----AYHFQPRLFGKIIPAKCRYEVL-STKVEIRLAK 250 (281)
Q Consensus 181 t~~~v~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~---~~~-----~~~~~~~L~~~I~p~~s~~~v~-~~kiei~L~K 250 (281)
.++...|.+.++|+++++++|++..+.|.|+-... .+. .|.=.+.|...|+++.-+.+.. ++.+.|+|.|
T Consensus 5 ~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~Pr 83 (83)
T cd06476 5 EDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQAPR 83 (83)
T ss_pred cCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEEecC
Confidence 46778889999999999999999999999986431 111 2444567999999999999996 8899998864
No 282
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.49 E-value=0.056 Score=44.20 Aligned_cols=98 Identities=14% Similarity=0.103 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--c----HHHH
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPS--M----SKAY 73 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~---~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~--~----~~a~ 73 (281)
..+..+|.-|++.||+++|++.|.++.+..-.. .+.+++...+.+..+++..+...+.++-.+-.. + .+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 356788999999999999999999988764332 467778888888899999999998888765432 2 2234
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHhhhcC
Q 023550 74 WRKATACMKLEEYETAKVALEKGASLA 100 (281)
Q Consensus 74 ~~~g~~~~~~g~~~~A~~~~~~a~~l~ 100 (281)
...|..+...++|..|...|-.+..-.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 456888888899999999888776544
No 283
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.47 E-value=0.093 Score=54.46 Aligned_cols=88 Identities=14% Similarity=0.132 Sum_probs=38.8
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhh
Q 023550 9 AKEAFIDDYFELAYDLYSQAIEI--SPNSAELFADRAQASIKLQNFTEAVADANRAIELE--PSMSKAYWRKATACMKLE 84 (281)
Q Consensus 9 g~~~~~~~~y~~Al~~y~~al~~--~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~--p~~~~a~~~~g~~~~~~g 84 (281)
...|.+.|++++|+++|.+.... .| +...|..+..+|.+.|++++|++.+++....+ | +...|..+-.+|.+.|
T Consensus 691 I~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P-d~~Ty~sLL~a~~k~G 768 (1060)
T PLN03218 691 MGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP-NTITYSILLVASERKD 768 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCC
Confidence 33444444444444444443321 22 23334444444445555555555544443322 2 2223333344455555
Q ss_pred cHHHHHHHHHHhhh
Q 023550 85 EYETAKVALEKGAS 98 (281)
Q Consensus 85 ~~~~A~~~~~~a~~ 98 (281)
+++.|...|.+..+
T Consensus 769 ~le~A~~l~~~M~k 782 (1060)
T PLN03218 769 DADVGLDLLSQAKE 782 (1060)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555444
No 284
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.46 E-value=0.0043 Score=36.54 Aligned_cols=24 Identities=17% Similarity=0.099 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHh
Q 023550 73 YWRKATACMKLEEYETAKVALEKG 96 (281)
Q Consensus 73 ~~~~g~~~~~~g~~~~A~~~~~~a 96 (281)
+..+|.+|..+|+|++|+.+|+++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555555555555555553
No 285
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.44 E-value=0.033 Score=56.76 Aligned_cols=94 Identities=10% Similarity=0.049 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--------cHH
Q 023550 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPS--------MSK 71 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p~~------~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~--------~~~ 71 (281)
...|..+...|++++|...+.+++...... ...+.++|.+++..|++++|...+++++.+... ...
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 574 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEF 574 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 445666677777777777777776542211 234456677777777777777777777664211 122
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhhc
Q 023550 72 AYWRKATACMKLEEYETAKVALEKGASL 99 (281)
Q Consensus 72 a~~~~g~~~~~~g~~~~A~~~~~~a~~l 99 (281)
.+..+|.+++..|++++|...+.+++.+
T Consensus 575 ~~~~la~~~~~~G~~~~A~~~~~~al~~ 602 (903)
T PRK04841 575 LLRIRAQLLWEWARLDEAEQCARKGLEV 602 (903)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhHHh
Confidence 3445667777777777777777776654
No 286
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.43 E-value=0.041 Score=51.34 Aligned_cols=100 Identities=14% Similarity=0.151 Sum_probs=56.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHH
Q 023550 6 EKKAKEAFIDDYFELAYDLYSQAIEISPN--SAELFADRAQASIKLQNFTEAVADANRAIEL-EPSMSKAYWRKATACMK 82 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p~--~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l-~p~~~~a~~~~g~~~~~ 82 (281)
+..|+.+.+.|+.++|++.|...++..|. +..++.++..|++.++.|.++...+.+-=.+ -|..+...|..+...++
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 34566666777777777777777666554 3456666777777777777766665553222 13444444444443322
Q ss_pred hh-c---------------HHHHHHHHHHhhhcCCCChh
Q 023550 83 LE-E---------------YETAKVALEKGASLAPGDSR 105 (281)
Q Consensus 83 ~g-~---------------~~~A~~~~~~a~~l~p~~~~ 105 (281)
.. + -..|.+++.+|.+.||.-+.
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 11 1 12355666666666666554
No 287
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.37 E-value=0.1 Score=54.10 Aligned_cols=88 Identities=10% Similarity=0.092 Sum_probs=37.8
Q ss_pred HHHHHhcCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhh
Q 023550 10 KEAFIDDYFELAYDLYSQAIEI----SPNSAELFADRAQASIKLQNFTEAVADANRAIELE-PSMSKAYWRKATACMKLE 84 (281)
Q Consensus 10 ~~~~~~~~y~~Al~~y~~al~~----~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~-p~~~~a~~~~g~~~~~~g 84 (281)
..+.+.|++++|.++|.+.... .|+ ...|..+..+|.+.|++++|++.|+...+.+ +.+...|..+..+|.+.|
T Consensus 550 ~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G 628 (1060)
T PLN03218 550 SACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKG 628 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Confidence 3344444444444444444321 222 2233334444444444444444444444443 223334444444444444
Q ss_pred cHHHHHHHHHHhhh
Q 023550 85 EYETAKVALEKGAS 98 (281)
Q Consensus 85 ~~~~A~~~~~~a~~ 98 (281)
++++|...|.+...
T Consensus 629 ~~deAl~lf~eM~~ 642 (1060)
T PLN03218 629 DWDFALSIYDDMKK 642 (1060)
T ss_pred CHHHHHHHHHHHHH
Confidence 44444444444433
No 288
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.37 E-value=0.0074 Score=35.48 Aligned_cols=29 Identities=10% Similarity=0.195 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC
Q 023550 38 LFADRAQASIKLQNFTEAVADANRAIELE 66 (281)
Q Consensus 38 ~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 66 (281)
+|.++|.+|.++|+|++|++.|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 36678888888888888888888866443
No 289
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.33 E-value=0.027 Score=55.92 Aligned_cols=26 Identities=8% Similarity=-0.102 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhh
Q 023550 72 AYWRKATACMKLEEYETAKVALEKGA 97 (281)
Q Consensus 72 a~~~~g~~~~~~g~~~~A~~~~~~a~ 97 (281)
.|..+..+|.+.|+.++|+..|++..
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMI 418 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444445555555555555555443
No 290
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=0.027 Score=48.75 Aligned_cols=76 Identities=17% Similarity=0.159 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHH
Q 023550 38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (281)
Q Consensus 38 ~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (281)
...++=..+...++++.|+.+.++.+.++|.++.-+.-+|.+|.++|.+.-|+..++..+++.|+++.........
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3444556677789999999999999999999999999999999999999999999999999999988664444333
No 291
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=96.30 E-value=0.027 Score=44.31 Aligned_cols=74 Identities=11% Similarity=0.130 Sum_probs=59.7
Q ss_pred ccccc-CCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcC---CCC----------eeeeccccccccccCcceEEEeC
Q 023550 176 HEFYQ-KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GEE----------AYHFQPRLFGKIIPAKCRYEVLS 241 (281)
Q Consensus 176 ~~w~Q-t~~~v~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~---~~~----------~~~~~~~L~~~I~p~~s~~~v~~ 241 (281)
++=++ +++.+.|++-+.|+.++++.|.+..+.|+|+.... .+. .|.=.+.|...|+++ +.+..+
T Consensus 35 vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A~~~n 112 (142)
T PRK11597 35 YNIEKSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GATFVN 112 (142)
T ss_pred EEEEEcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cCEEcC
Confidence 56676 57789999999999999999999999999986421 111 355566788899998 578899
Q ss_pred cEEEEEEeec
Q 023550 242 TKVEIRLAKA 251 (281)
Q Consensus 242 ~kiei~L~K~ 251 (281)
+-+.|+|.|.
T Consensus 113 GVL~I~lPK~ 122 (142)
T PRK11597 113 GLLHIDLIRN 122 (142)
T ss_pred CEEEEEEecc
Confidence 9999999986
No 292
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.25 E-value=0.0074 Score=50.84 Aligned_cols=63 Identities=24% Similarity=0.256 Sum_probs=57.9
Q ss_pred HHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhH
Q 023550 44 QASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF 106 (281)
Q Consensus 44 ~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~ 106 (281)
....+.++.+.|.+.|.+++.+.|.....|+++|......|+++.|.+.|++.++++|.+...
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g 65 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG 65 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence 345567899999999999999999999999999999999999999999999999999987643
No 293
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.24 E-value=0.065 Score=42.23 Aligned_cols=84 Identities=15% Similarity=-0.073 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
.++..........+.+++..++...--+.|+.+++-..-|..++..|+|.+|+..++....-.+..+-+--.++.|++.+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 45566666777899999999999888889999999999999999999999999999999988888888888899999999
Q ss_pred hcHH
Q 023550 84 EEYE 87 (281)
Q Consensus 84 g~~~ 87 (281)
|+..
T Consensus 92 ~Dp~ 95 (153)
T TIGR02561 92 GDAE 95 (153)
T ss_pred CChH
Confidence 9853
No 294
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=96.23 E-value=0.021 Score=40.91 Aligned_cols=68 Identities=15% Similarity=0.208 Sum_probs=54.3
Q ss_pred CCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcC--C----C------CeeeeccccccccccCcceEEE-eCcEEEEE
Q 023550 181 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP--G----E------EAYHFQPRLFGKIIPAKCRYEV-LSTKVEIR 247 (281)
Q Consensus 181 t~~~v~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~--~----~------~~~~~~~~L~~~I~p~~s~~~v-~~~kiei~ 247 (281)
..+.+.|.+.++|+.++++.|.+..+.|.|+.... . + ..|.=.+.|...|+++..+..+ .++.+.|+
T Consensus 5 ~~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~ 84 (87)
T cd06481 5 GKEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHIR 84 (87)
T ss_pred ccceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEEEE
Confidence 45788999999999999999999999999986421 1 1 2355567899999999989888 67788887
Q ss_pred E
Q 023550 248 L 248 (281)
Q Consensus 248 L 248 (281)
+
T Consensus 85 ~ 85 (87)
T cd06481 85 A 85 (87)
T ss_pred c
Confidence 6
No 295
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=96.20 E-value=0.041 Score=49.37 Aligned_cols=66 Identities=24% Similarity=0.350 Sum_probs=55.6
Q ss_pred CCCeEEEEEEecCC-CCcceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCcceEEEeC--cEEEEEEe
Q 023550 181 KPEEVVVTVFAKGI-PAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLS--TKVEIRLA 249 (281)
Q Consensus 181 t~~~v~i~v~~k~~-~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~--~kiei~L~ 249 (281)
..+.+.|+|.+.|+ ...++.+++.++.|.|.+... .|.|++.|-.+|+++.++.+... ..+.|+|.
T Consensus 259 ~p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~~---~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 259 SPEELVVEIELPGVESASDIDLDVSEDRLSLSSPKP---KYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred CCceEEEEEECCCcCccceeEEEEeCCEEEEEeCCC---ceEEEccCCCcccCCCceEEEccCCCEEEEEEE
Confidence 47889999999998 569999999999999998632 69999999999999988666555 46888873
No 296
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.18 E-value=0.06 Score=55.76 Aligned_cols=108 Identities=14% Similarity=0.035 Sum_probs=86.2
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHhh
Q 023550 7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATACMKLE 84 (281)
Q Consensus 7 ~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~--~~~a~~~~g~~~~~~g 84 (281)
.....|.+.+.+++|.++|+..++...+....|...|..+++.++-+.|...+.+|+.--|. ..+..-..|+.-|+.|
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 34556667788888888888888877777888888888888888888888888888888876 6677777888888888
Q ss_pred cHHHHHHHHHHhhhcCCCChhHHHHHHHHH
Q 023550 85 EYETAKVALEKGASLAPGDSRFTNLIKECE 114 (281)
Q Consensus 85 ~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (281)
+.+.+...|+-.+.-+|.-.++|.-.....
T Consensus 1615 DaeRGRtlfEgll~ayPKRtDlW~VYid~e 1644 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPKRTDLWSVYIDME 1644 (1710)
T ss_pred CchhhHHHHHHHHhhCccchhHHHHHHHHH
Confidence 888888888888888887777665544443
No 297
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=0.11 Score=44.06 Aligned_cols=97 Identities=24% Similarity=0.206 Sum_probs=61.9
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHc-cCHHHHHHHHHHHHHcCC------CcHHHHH
Q 023550 8 KAKEAFIDDYFELAYDLYSQAIEISPNSA------ELFADRAQASIKL-QNFTEAVADANRAIELEP------SMSKAYW 74 (281)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~al~~~p~~~------~~~~~~a~~~~~l-~~~~~A~~~~~~al~l~p------~~~~a~~ 74 (281)
.+..+|+..+.++|+.++.+++++.-+-. ..+..+|..|..- .+++.|+..|+++-.... .-.++++
T Consensus 79 eA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~l 158 (288)
T KOG1586|consen 79 EAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLL 158 (288)
T ss_pred HHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHH
Confidence 34445566677777777777776644332 2233455555443 677777777777765432 2245777
Q ss_pred HHHHHHHHhhcHHHHHHHHHHhhhcCCCCh
Q 023550 75 RKATACMKLEEYETAKVALEKGASLAPGDS 104 (281)
Q Consensus 75 ~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~ 104 (281)
..+..-..+++|.+|+..|++..+..-++.
T Consensus 159 KvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 159 KVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 777777788888888888888777655554
No 298
>PLN03077 Protein ECB2; Provisional
Probab=96.15 E-value=0.045 Score=55.72 Aligned_cols=103 Identities=14% Similarity=0.098 Sum_probs=59.6
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHH
Q 023550 10 KEAFIDDYFELAYDLYSQAIEISP--NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE 87 (281)
Q Consensus 10 ~~~~~~~~y~~Al~~y~~al~~~p--~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~ 87 (281)
..+.+.|++++|.++|+...+..+ -+...|.-+..++.+.|++++|.+.++.. .+.|+ ...|-.+-.+|...|+.+
T Consensus 597 ~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e 674 (857)
T PLN03077 597 CACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVE 674 (857)
T ss_pred HHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChH
Confidence 445566677777777766653311 12345666666677777777776666553 23343 344444444555566666
Q ss_pred HHHHHHHHhhhcCCCChhHHHHHHHHH
Q 023550 88 TAKVALEKGASLAPGDSRFTNLIKECE 114 (281)
Q Consensus 88 ~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (281)
.|....+++++++|++......+..++
T Consensus 675 ~~e~~a~~l~~l~p~~~~~y~ll~n~y 701 (857)
T PLN03077 675 LGELAAQHIFELDPNSVGYYILLCNLY 701 (857)
T ss_pred HHHHHHHHHHhhCCCCcchHHHHHHHH
Confidence 666666666666666665555554444
No 299
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.13 E-value=0.15 Score=43.60 Aligned_cols=100 Identities=21% Similarity=0.156 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-----CCcHHH
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA------ELFADRAQASIKLQNFTEAVADANRAIELE-----PSMSKA 72 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~------~~~~~~a~~~~~l~~~~~A~~~~~~al~l~-----p~~~~a 72 (281)
.+...+..+-..++|++|-..+.+|.+-..++. ..|-..|..+..+..+.++...+++|..+. |+-+..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAm 112 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAM 112 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHH
Confidence 445556666678899999999999997665553 345566667777889999999999998764 444555
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhhhcCCCC
Q 023550 73 YWRKATACMKLEEYETAKVALEKGASLAPGD 103 (281)
Q Consensus 73 ~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~ 103 (281)
-+.++--.....+.++|+..|++++.+-..+
T Consensus 113 aleKAak~lenv~Pd~AlqlYqralavve~~ 143 (308)
T KOG1585|consen 113 ALEKAAKALENVKPDDALQLYQRALAVVEED 143 (308)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Confidence 5566666677778999999999988764443
No 300
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.05 E-value=0.066 Score=38.64 Aligned_cols=65 Identities=17% Similarity=0.103 Sum_probs=50.0
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCC--hhHHHHHHHHHHHHHh
Q 023550 55 AVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD--SRFTNLIKECEERIAE 119 (281)
Q Consensus 55 A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~--~~~~~~l~~~~~~l~~ 119 (281)
.+..++..+..+|++..+.+.+|..+...|++++|+..+...++.+++. ...+..+-.+-..++.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 3566889999999999999999999999999999999999999998765 4455555555555544
No 301
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.01 E-value=0.11 Score=41.60 Aligned_cols=85 Identities=14% Similarity=0.117 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHH
Q 023550 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE 115 (281)
Q Consensus 36 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 115 (281)
...++....+-+..++.+++...+.-.-.+.|.....-+.-|..+...|+|.+|+..|+......|..+..+..+..|..
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 35677777888888999999999999889999999999999999999999999999999999999999988999999987
Q ss_pred HHHhh
Q 023550 116 RIAEE 120 (281)
Q Consensus 116 ~l~~~ 120 (281)
.+++.
T Consensus 90 ~~~D~ 94 (160)
T PF09613_consen 90 ALGDP 94 (160)
T ss_pred HcCCh
Confidence 77665
No 302
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.00 E-value=0.097 Score=53.26 Aligned_cols=111 Identities=16% Similarity=0.165 Sum_probs=86.5
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHc----c---CHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 023550 9 AKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKL----Q---NFTEAVADANRAIELEPSMSKAYWRKAT 78 (281)
Q Consensus 9 g~~~~~~~~y~~Al~~y~~al~~~p~~---~~~~~~~a~~~~~l----~---~~~~A~~~~~~al~l~p~~~~a~~~~g~ 78 (281)
.+++...+.|+.|+..|++.-..-|.. .++.++.|.+++.. | .+.+|+.-|++ +.-.|.-+.-|+.+|.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 560 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSY-LHGGVGAPLEYLGKAL 560 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHH-hcCCCCCchHHHhHHH
Confidence 356778889999999999998888765 46677777776654 2 36666666655 2344667788999999
Q ss_pred HHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 79 ~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
+|.++|+|++=+++|.-|++..|+.+.+......+-.++-..
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHES 602 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Confidence 999999999999999999999999998877776666665544
No 303
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.96 E-value=0.01 Score=55.13 Aligned_cols=78 Identities=12% Similarity=0.108 Sum_probs=67.9
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC
Q 023550 6 EKKAKEAFIDDYFELAYDLYSQAIEI------------------SPNSAELFADRAQASIKLQNFTEAVADANRAIELEP 67 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~------------------~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p 67 (281)
.+.|..+|+.+.|.-++.+|.+|++- ....-+++++.|..|+..|+.-.|.++|.+++....
T Consensus 287 NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh 366 (696)
T KOG2471|consen 287 NNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH 366 (696)
T ss_pred cCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 45688899999999999999999961 112357899999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHh
Q 023550 68 SMSKAYWRKATACMKL 83 (281)
Q Consensus 68 ~~~~a~~~~g~~~~~~ 83 (281)
.++..|+|++.|+...
T Consensus 367 ~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 367 RNPRLWLRLAECCIMA 382 (696)
T ss_pred cCcHHHHHHHHHHHHH
Confidence 9999999999998753
No 304
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.95 E-value=0.057 Score=48.10 Aligned_cols=55 Identities=18% Similarity=0.021 Sum_probs=36.1
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 023550 41 DRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEK 95 (281)
Q Consensus 41 ~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~ 95 (281)
..|.++...|-|++|...+++++++++.+.-+...++.++.-.|++.++.+.+.+
T Consensus 180 myaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 180 MYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 3566666677777777777777777777666666666666666666666555443
No 305
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.94 E-value=0.0019 Score=57.27 Aligned_cols=75 Identities=19% Similarity=0.251 Sum_probs=67.3
Q ss_pred HHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 46 SIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 46 ~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
.+..|.++.|++.+..+|.++|..+..|-.++.++..+++...|+..|..++.++|+...-..|..+++..++.-
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNW 198 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhch
Confidence 345678999999999999999999999999999999999999999999999999999888777777777766654
No 306
>PLN03077 Protein ECB2; Provisional
Probab=95.89 E-value=0.098 Score=53.25 Aligned_cols=107 Identities=15% Similarity=0.158 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCcHHHHHHHHH
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEI--SPNSAELFADRAQASIKLQNFTEAVADANRAIEL---EPSMSKAYWRKAT 78 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~--~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l---~p~~~~a~~~~g~ 78 (281)
.|......|.+.|+.++|+++|++..+. .|+... |..+-.++.+.|++++|.+.++...+. .| +...|..+..
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T-~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P-~~~~y~~lv~ 633 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT-FISLLCACSRSGMVTQGLEYFHSMEEKYSITP-NLKHYACVVD 633 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc-HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC-chHHHHHHHH
Confidence 3566778889999999999999998774 566554 455556788999999999999998843 34 4468888999
Q ss_pred HHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHH
Q 023550 79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113 (281)
Q Consensus 79 ~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (281)
+|.+.|++++|...+++. ...|+...+...+..|
T Consensus 634 ~l~r~G~~~eA~~~~~~m-~~~pd~~~~~aLl~ac 667 (857)
T PLN03077 634 LLGRAGKLTEAYNFINKM-PITPDPAVWGALLNAC 667 (857)
T ss_pred HHHhCCCHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Confidence 999999999999999875 3566544333444433
No 307
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.86 E-value=0.084 Score=45.07 Aligned_cols=94 Identities=21% Similarity=0.270 Sum_probs=61.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHc----C--CCcHHHH
Q 023550 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIEL----E--PSMSKAY 73 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p~~------~~~~~~~a~~~~~l~~~~~A~~~~~~al~l----~--p~~~~a~ 73 (281)
..++-......+.++|+.+|++++..-.++ .+++...++.+.++++|.+|-..+.+-..+ + ++..+++
T Consensus 114 leKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~ 193 (308)
T KOG1585|consen 114 LEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAY 193 (308)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHH
Confidence 344555566677788888888877653322 456667777888888888876666553322 1 3344555
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHhhhc
Q 023550 74 WRKATACMKLEEYETAKVALEKGASL 99 (281)
Q Consensus 74 ~~~g~~~~~~g~~~~A~~~~~~a~~l 99 (281)
...-.+|....+|..|..+|+.+..+
T Consensus 194 va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 194 VAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred HHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 55666667777888888888776554
No 308
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.84 E-value=0.33 Score=44.34 Aligned_cols=99 Identities=17% Similarity=0.054 Sum_probs=73.3
Q ss_pred HHHHHHHHH---hcCHHHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHcCCCc---
Q 023550 6 EKKAKEAFI---DDYFELAYDLYSQ-AIEISPNSAELFADRAQASIKL---------QNFTEAVADANRAIELEPSM--- 69 (281)
Q Consensus 6 ~~~g~~~~~---~~~y~~Al~~y~~-al~~~p~~~~~~~~~a~~~~~l---------~~~~~A~~~~~~al~l~p~~--- 69 (281)
+..|.++.+ .|+.++|+..+.. .....+.+++.+...|.+|-.+ ....+|+.+|.++++++|+.
T Consensus 183 ~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~G 262 (374)
T PF13281_consen 183 FQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSG 262 (374)
T ss_pred HHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccch
Confidence 466777888 8999999999988 4555677788888888887654 34778999999999887641
Q ss_pred ------------------------------------------HHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCCh
Q 023550 70 ------------------------------------------SKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104 (281)
Q Consensus 70 ------------------------------------------~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~ 104 (281)
...+-.++.+....|++++|.+++++++++.|..=
T Consensus 263 IN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 263 INAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred HHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 11112245566667899999999999999976543
No 309
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.84 E-value=0.09 Score=36.70 Aligned_cols=64 Identities=19% Similarity=0.231 Sum_probs=49.6
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHH---HHHHHHHHHccCHHHHHHHHHHHHHc
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELF---ADRAQASIKLQNFTEAVADANRAIEL 65 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~---~~~a~~~~~l~~~~~A~~~~~~al~l 65 (281)
+...+.+|..+|...+.++|+..++++++..++..+-+ -.++++|...|+|.+.+.++-+=+.+
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999877765444 44667788889999988876655543
No 310
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.77 E-value=0.18 Score=46.10 Aligned_cols=78 Identities=15% Similarity=0.074 Sum_probs=66.1
Q ss_pred HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------------CC---------------CcHHHHHHHHH
Q 023550 28 AIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL--------------EP---------------SMSKAYWRKAT 78 (281)
Q Consensus 28 al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l--------------~p---------------~~~~a~~~~g~ 78 (281)
.+..+|-+.+.+.+++.++...|+++.|.+.+++||-. +. ....+.++...
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 34568999999999999999999999999999998721 11 12558888999
Q ss_pred HHHHhhcHHHHHHHHHHhhhcCCC-Chh
Q 023550 79 ACMKLEEYETAKVALEKGASLAPG-DSR 105 (281)
Q Consensus 79 ~~~~~g~~~~A~~~~~~a~~l~p~-~~~ 105 (281)
.+.+.|.+..|.++++-.+.++|. |+-
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~ 139 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPL 139 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcc
Confidence 999999999999999999999999 654
No 311
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.31 Score=42.13 Aligned_cols=105 Identities=10% Similarity=0.039 Sum_probs=89.2
Q ss_pred hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHH-HHHHH
Q 023550 15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE-TAKVA 92 (281)
Q Consensus 15 ~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~-~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~-~A~~~ 92 (281)
...-+.|+.+-..+|.++|.+..+|..|=.++..++ +..+-+++++..+.-+|.+..+|..+-.+...+|++. .=+..
T Consensus 56 ~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef 135 (318)
T KOG0530|consen 56 NEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEF 135 (318)
T ss_pred cccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHH
Confidence 445688999999999999999999988888887765 6778899999999999999999999999999999888 77888
Q ss_pred HHHhhhcCCCChhHHHHHHHHHHHHHh
Q 023550 93 LEKGASLAPGDSRFTNLIKECEERIAE 119 (281)
Q Consensus 93 ~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (281)
.+..+..+..+-.+|.....|-...+.
T Consensus 136 ~~~~l~~DaKNYHaWshRqW~~r~F~~ 162 (318)
T KOG0530|consen 136 TKLMLDDDAKNYHAWSHRQWVLRFFKD 162 (318)
T ss_pred HHHHHhccccchhhhHHHHHHHHHHhh
Confidence 889999888888877777666554444
No 312
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.69 E-value=0.052 Score=47.00 Aligned_cols=72 Identities=18% Similarity=0.188 Sum_probs=65.4
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 023550 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (281)
Q Consensus 9 g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 80 (281)
=..+.+.++++.|+..-.+.+.++|.++.-+.-||.+|.++|-+.-|++++...++..|+++.+-..++...
T Consensus 188 k~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~ 259 (269)
T COG2912 188 KAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL 259 (269)
T ss_pred HHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 455778899999999999999999999999999999999999999999999999999999988877766554
No 313
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.68 E-value=0.17 Score=45.25 Aligned_cols=100 Identities=11% Similarity=-0.016 Sum_probs=83.3
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc-CCCcHHHHH---HHHHHHHH
Q 023550 7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL-EPSMSKAYW---RKATACMK 82 (281)
Q Consensus 7 ~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l-~p~~~~a~~---~~g~~~~~ 82 (281)
..+-.++-+|++.+|-...++.|+..|.+..++-.--.++.-+|+...-...+++.+-. +++.+-.-| .++.++..
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E 187 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE 187 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH
Confidence 34556778899999999999999999999888888888889999999999999999876 666643333 35677788
Q ss_pred hhcHHHHHHHHHHhhhcCCCChhH
Q 023550 83 LEEYETAKVALEKGASLAPGDSRF 106 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~l~p~~~~~ 106 (281)
+|-|++|...-.+++++++.|.-.
T Consensus 188 ~g~y~dAEk~A~ralqiN~~D~Wa 211 (491)
T KOG2610|consen 188 CGIYDDAEKQADRALQINRFDCWA 211 (491)
T ss_pred hccchhHHHHHHhhccCCCcchHH
Confidence 899999999999999999988643
No 314
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.64 E-value=0.32 Score=43.54 Aligned_cols=119 Identities=18% Similarity=0.134 Sum_probs=93.7
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--C-C-------
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISP----NSAELFADRAQASIKLQNFTEAVADANRAIEL--E-P------- 67 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p----~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l--~-p------- 67 (281)
+..+...+..+-+.|.++.|...+.++...++ ..+.+.+..|..+...|+..+|+..++..+.. . .
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~ 225 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA 225 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence 35678889999999999999999999988642 24678889999999999999999998888871 1 0
Q ss_pred ------------------------CcHHHHHHHHHHHHHh------hcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 023550 68 ------------------------SMSKAYWRKATACMKL------EEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (281)
Q Consensus 68 ------------------------~~~~a~~~~g~~~~~~------g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (281)
..+++++.+|.-...+ +.++++...|..+..++|+....+...+.....+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 226 ELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred HHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 1255677777777777 7888899999999999998887766666665555
Q ss_pred Hhh
Q 023550 118 AEE 120 (281)
Q Consensus 118 ~~~ 120 (281)
-..
T Consensus 306 ~~~ 308 (352)
T PF02259_consen 306 LES 308 (352)
T ss_pred HHh
Confidence 444
No 315
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.61 E-value=0.15 Score=47.82 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=21.1
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 023550 10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQ 44 (281)
Q Consensus 10 ~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~ 44 (281)
..+.+..+.+.-+++-.+||+.+|+-+++|+.+|.
T Consensus 176 q~AWRERnp~aRIkaA~eALei~pdCAdAYILLAE 210 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEINPDCADAYILLAE 210 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccc
Confidence 34455666666666666666666666665555443
No 316
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.60 E-value=0.034 Score=48.98 Aligned_cols=87 Identities=13% Similarity=0.095 Sum_probs=75.2
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHH-HHHHHHHhhcHHHHHHHHHHhhhcCCC
Q 023550 24 LYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR-KATACMKLEEYETAKVALEKGASLAPG 102 (281)
Q Consensus 24 ~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~-~g~~~~~~g~~~~A~~~~~~a~~l~p~ 102 (281)
.|.++-...++++.+|...+....+.|-|.+--..|..++..+|.+.+.|.. .+.-++..++++.+...|.++++++|+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 3444445568889999999999999999999999999999999999999988 667888899999999999999999999
Q ss_pred ChhHHHHH
Q 023550 103 DSRFTNLI 110 (281)
Q Consensus 103 ~~~~~~~l 110 (281)
++.+|...
T Consensus 175 ~p~iw~ey 182 (435)
T COG5191 175 SPRIWIEY 182 (435)
T ss_pred CchHHHHH
Confidence 99766443
No 317
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.27 E-value=0.096 Score=47.18 Aligned_cols=94 Identities=16% Similarity=0.021 Sum_probs=75.4
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCC----C------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcC------CCc
Q 023550 6 EKKAKEAFIDDYFELAYDLYSQAIEISPN----S------AELFADRAQASIKLQNFTEAVADANRAIELE------PSM 69 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p~----~------~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~------p~~ 69 (281)
...|..+-+.+||++|+.+..+|.++... + ...++.++.++.++|+...|.++++.+.++. +..
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ 245 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ 245 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence 45677888999999999999999887322 1 3457788899999999999999999988764 334
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhhhc
Q 023550 70 SKAYWRKATACMKLEEYETAKVALEKGASL 99 (281)
Q Consensus 70 ~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l 99 (281)
......+|.+|..+|+.+.|..-|+.|...
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 667777899999999999888888877553
No 318
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.23 E-value=0.67 Score=43.07 Aligned_cols=91 Identities=19% Similarity=0.141 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhcC-HHHHHHHHHHHHhcCCCCHHH---------------------------------------------
Q 023550 5 LEKKAKEAFIDDY-FELAYDLYSQAIEISPNSAEL--------------------------------------------- 38 (281)
Q Consensus 5 ~~~~g~~~~~~~~-y~~Al~~y~~al~~~p~~~~~--------------------------------------------- 38 (281)
+..-|..+.+.|. -++|+.++..++...+.+...
T Consensus 382 L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~e 461 (549)
T PF07079_consen 382 LVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEE 461 (549)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHH
Confidence 4556777777777 677888888888887776211
Q ss_pred ---HHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHh
Q 023550 39 ---FADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKG 96 (281)
Q Consensus 39 ---~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 96 (281)
...-|..++..|+|.++.-...=..+++| .+.++..+|.|++..++|++|..++...
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 22233345556888888887777778889 8889999999999999999999888765
No 319
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.17 E-value=0.43 Score=43.59 Aligned_cols=94 Identities=13% Similarity=-0.012 Sum_probs=75.7
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHHH-HcCCCcHHHHHHHHHHH
Q 023550 9 AKEAFIDDYFELAYDLYSQAIEI----SPNSAELFADRAQASIK---LQNFTEAVADANRAI-ELEPSMSKAYWRKATAC 80 (281)
Q Consensus 9 g~~~~~~~~y~~Al~~y~~al~~----~p~~~~~~~~~a~~~~~---l~~~~~A~~~~~~al-~l~p~~~~a~~~~g~~~ 80 (281)
-..|-..++|+.-+.+.+..-.. -++.+.+...+|.++.+ .|+.++|++.+..++ ...+.+++.+..+|.+|
T Consensus 148 llSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 148 LLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred HHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 34455678899988888876555 44567778889999999 899999999999844 55667889999999988
Q ss_pred HHh---------hcHHHHHHHHHHhhhcCCC
Q 023550 81 MKL---------EEYETAKVALEKGASLAPG 102 (281)
Q Consensus 81 ~~~---------g~~~~A~~~~~~a~~l~p~ 102 (281)
..+ ...++|+.+|.++.+++|+
T Consensus 228 KD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~ 258 (374)
T PF13281_consen 228 KDLFLESNFTDRESLDKAIEWYRKGFEIEPD 258 (374)
T ss_pred HHHHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence 764 3578999999999999964
No 320
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=95.13 E-value=0.12 Score=37.07 Aligned_cols=66 Identities=17% Similarity=0.090 Sum_probs=51.4
Q ss_pred CCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcC--C---C-Ce-----eeeccccccccccCcceEEEeCc-EEEE
Q 023550 181 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP--G---E-EA-----YHFQPRLFGKIIPAKCRYEVLST-KVEI 246 (281)
Q Consensus 181 t~~~v~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~--~---~-~~-----~~~~~~L~~~I~p~~s~~~v~~~-kiei 246 (281)
.++.++|++-++|+.+++++|.+..+.|+|+.... . + .. |.=.+.|...|++++-+.+.... .+.|
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i 83 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKI 83 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEE
Confidence 46789999999999999999999999999996431 1 1 12 33456788999999888888887 5655
No 321
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.12 E-value=0.16 Score=36.74 Aligned_cols=56 Identities=20% Similarity=0.253 Sum_probs=30.3
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Q 023550 11 EAFIDDYFELAYDLYSQAIEISPNS---------AELFADRAQASIKLQNFTEAVADANRAIELE 66 (281)
Q Consensus 11 ~~~~~~~y~~Al~~y~~al~~~p~~---------~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 66 (281)
...+.|||.+|++.+.+.++..... ..++.++|.++...|++++|+..++.++++.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4455666666666665555542111 2334455555555566666666665555543
No 322
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.12 E-value=0.3 Score=37.88 Aligned_cols=76 Identities=14% Similarity=0.121 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhc---CHHHHHHHHHHHHh-cCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 023550 4 DLEKKAKEAFIDD---YFELAYDLYSQAIE-ISPNS-AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78 (281)
Q Consensus 4 ~~~~~g~~~~~~~---~y~~Al~~y~~al~-~~p~~-~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~ 78 (281)
..|+.+..+.... +.++.|.++...++ .+|.. -+..+.+|..|+++++|+.++.+.+..++..|++..+.-..-.
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ 113 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKET 113 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 4566677777544 46778999999986 44443 5788899999999999999999999999999999877655444
Q ss_pred H
Q 023550 79 A 79 (281)
Q Consensus 79 ~ 79 (281)
+
T Consensus 114 i 114 (149)
T KOG3364|consen 114 I 114 (149)
T ss_pred H
Confidence 3
No 323
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.94 E-value=0.31 Score=38.46 Aligned_cols=84 Identities=13% Similarity=0.049 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHH
Q 023550 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (281)
Q Consensus 37 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 116 (281)
..++....+.+..++..++...+...--+.|........-|..+...|+|.+|+..|+...+-.+..+..+..+..|...
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 45566666777789999999999888889999999999999999999999999999999998888878888888888887
Q ss_pred HHhh
Q 023550 117 IAEE 120 (281)
Q Consensus 117 l~~~ 120 (281)
+++.
T Consensus 91 l~Dp 94 (153)
T TIGR02561 91 KGDA 94 (153)
T ss_pred cCCh
Confidence 7665
No 324
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.89 E-value=0.2 Score=48.22 Aligned_cols=73 Identities=14% Similarity=0.140 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHH
Q 023550 37 ELFADRAQASIKLQNFTEAVADANRAIELEPS------MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNL 109 (281)
Q Consensus 37 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~------~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~ 109 (281)
.++.+-|.-++++++|..++++|...++.-|. +.+....++.||..+.+.+.|.+++++|-+++|.+.-.+..
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~ 433 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLL 433 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 45678889999999999999999999976553 47888999999999999999999999999999987744433
No 325
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=94.87 E-value=0.22 Score=35.35 Aligned_cols=68 Identities=7% Similarity=-0.009 Sum_probs=52.1
Q ss_pred cCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcC---CCC-----eeeeccccccccccCcceEEE-eCcEEEEE
Q 023550 180 QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GEE-----AYHFQPRLFGKIIPAKCRYEV-LSTKVEIR 247 (281)
Q Consensus 180 Qt~~~v~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~---~~~-----~~~~~~~L~~~I~p~~s~~~v-~~~kiei~ 247 (281)
-+++...|.+-+.|+.+++++|.+..+.|+|+-... ++. .|.=.+.|...|++++-+.+. ..+-+.|.
T Consensus 4 e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~ 80 (83)
T cd06477 4 EGKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVE 80 (83)
T ss_pred cCCceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEE
Confidence 357788899999999999999999999999996431 111 244456789999999888877 46666665
No 326
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.59 E-value=0.088 Score=31.26 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHc
Q 023550 38 LFADRAQASIKLQNFTEAVADANRAIEL 65 (281)
Q Consensus 38 ~~~~~a~~~~~l~~~~~A~~~~~~al~l 65 (281)
.+.++|.+|..+|++++|+..+++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4555566666666666666666655543
No 327
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.53 E-value=1.9 Score=37.82 Aligned_cols=100 Identities=13% Similarity=0.040 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHHHhc-CHHHHHHHHHHHHhc----CCCC----------HHHHHHHHHHHHHccCHHH---HHHHHHHHH
Q 023550 2 ATDLEKKAKEAFIDD-YFELAYDLYSQAIEI----SPNS----------AELFADRAQASIKLQNFTE---AVADANRAI 63 (281)
Q Consensus 2 a~~~~~~g~~~~~~~-~y~~Al~~y~~al~~----~p~~----------~~~~~~~a~~~~~l~~~~~---A~~~~~~al 63 (281)
++.+++-|..++..+ +|+.|+.+++++++. ...+ ...+..++.+|+..+.++. |....+.+-
T Consensus 35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~ 114 (278)
T PF08631_consen 35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLE 114 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 456789999999999 999999999999887 2211 3557778889988877554 444444444
Q ss_pred HcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCC
Q 023550 64 ELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101 (281)
Q Consensus 64 ~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p 101 (281)
...|+.+..++..-.++...++.+.+...+.+.+..-+
T Consensus 115 ~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 115 SEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 55577677765555555557888888888888877644
No 328
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=94.49 E-value=0.59 Score=48.84 Aligned_cols=98 Identities=14% Similarity=0.066 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPN--SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~--~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (281)
-|...|..++++.+-+.|..++.+||..-|. +.++....|+.-++.|+-+.+...|+-.+.-+|...+.|.-+...-.
T Consensus 1566 vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ei 1645 (1710)
T KOG1070|consen 1566 VWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEI 1645 (1710)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHH
Confidence 4778899999999999999999999999888 78999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHHHHHhhhcCC
Q 023550 82 KLEEYETAKVALEKGASLAP 101 (281)
Q Consensus 82 ~~g~~~~A~~~~~~a~~l~p 101 (281)
+.|+-+.+...|++++.+.=
T Consensus 1646 k~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1646 KHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred ccCCHHHHHHHHHHHHhcCC
Confidence 99999999999999988753
No 329
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.42 E-value=0.79 Score=41.02 Aligned_cols=99 Identities=25% Similarity=0.125 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc-CC-C-------------------------C-------HHHHHHHHHHHHHc
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEI-SP-N-------------------------S-------AELFADRAQASIKL 49 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~-~p-~-------------------------~-------~~~~~~~a~~~~~l 49 (281)
..+..+..+...|+-.+|+..+...+.. .. . . ..++..+|.....+
T Consensus 186 v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~ 265 (352)
T PF02259_consen 186 VFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDEL 265 (352)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhh
Confidence 3466788999999999999999888881 10 0 1 34455666666666
Q ss_pred ------cCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcH-----------------HHHHHHHHHhhhcCCC
Q 023550 50 ------QNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY-----------------ETAKVALEKGASLAPG 102 (281)
Q Consensus 50 ------~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~-----------------~~A~~~~~~a~~l~p~ 102 (281)
+.+++++..|..++.++|...++|+..|..+..+-+. ..|+.+|-+++.+.+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 266 YSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred ccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 7788899999999999999999999999888766322 3477888888888876
No 330
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.33 E-value=0.66 Score=40.68 Aligned_cols=64 Identities=22% Similarity=0.177 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhc
Q 023550 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (281)
Q Consensus 36 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l 99 (281)
..++..++..+...++++.++..+++.+.++|.+-.+|.++-.+|+..|+...|+..|++..++
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4556778888888899999999999999999999999999999999999999999999988764
No 331
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.31 E-value=0.61 Score=42.57 Aligned_cols=91 Identities=19% Similarity=0.210 Sum_probs=72.2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHH--HHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023550 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRA--QASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a--~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
...++...-.|+|++|-+.|+..+. +|..- .+-.|| ....++|.++.|..+..++....|...-++...-......
T Consensus 124 lLeAQaal~eG~~~~Ar~kfeAMl~-dPEtR-llGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~ 201 (531)
T COG3898 124 LLEAQAALLEGDYEDARKKFEAMLD-DPETR-LLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAA 201 (531)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHhc-ChHHH-HHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhc
Confidence 4467888899999999999988665 45432 222233 3345679999999999999999999998988888889999
Q ss_pred hcHHHHHHHHHHhhh
Q 023550 84 EEYETAKVALEKGAS 98 (281)
Q Consensus 84 g~~~~A~~~~~~a~~ 98 (281)
|+|+.|++.......
T Consensus 202 gdWd~AlkLvd~~~~ 216 (531)
T COG3898 202 GDWDGALKLVDAQRA 216 (531)
T ss_pred CChHHHHHHHHHHHH
Confidence 999999998876543
No 332
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.24 E-value=1.8 Score=37.81 Aligned_cols=104 Identities=14% Similarity=-0.056 Sum_probs=77.8
Q ss_pred HHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcc-------CHHHHHHHHHHHHHcCCCcHH
Q 023550 4 DLEKKAKEAFI----DDYFELAYDLYSQAIEISPNS-AELFADRAQASIKLQ-------NFTEAVADANRAIELEPSMSK 71 (281)
Q Consensus 4 ~~~~~g~~~~~----~~~y~~Al~~y~~al~~~p~~-~~~~~~~a~~~~~l~-------~~~~A~~~~~~al~l~p~~~~ 71 (281)
..+..|..+.. ..|+.+|..+|.++.+..-.. ....+.++.+|..-. +...|+..+.++.... +..
T Consensus 111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~ 188 (292)
T COG0790 111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPD 188 (292)
T ss_pred HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHH
Confidence 45667777776 559999999999999985443 344777888877641 3347889999988877 778
Q ss_pred HHHHHHHHHHH----hhcHHHHHHHHHHhhhcCCCChhHHHHHH
Q 023550 72 AYWRKATACMK----LEEYETAKVALEKGASLAPGDSRFTNLIK 111 (281)
Q Consensus 72 a~~~~g~~~~~----~g~~~~A~~~~~~a~~l~p~~~~~~~~l~ 111 (281)
+.+.+|.+|.. ..++.+|..+|.++-+... .....++.
T Consensus 189 a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 189 AQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 99999988865 3489999999999998876 33344444
No 333
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.00 E-value=0.11 Score=30.79 Aligned_cols=29 Identities=28% Similarity=0.202 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhhhc
Q 023550 71 KAYWRKATACMKLEEYETAKVALEKGASL 99 (281)
Q Consensus 71 ~a~~~~g~~~~~~g~~~~A~~~~~~a~~l 99 (281)
.++..+|.+|..+|++++|..++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 57789999999999999999999998765
No 334
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=93.97 E-value=0.88 Score=40.83 Aligned_cols=83 Identities=13% Similarity=0.125 Sum_probs=50.4
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccC------------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHH
Q 023550 24 LYSQAIEISPNSAELFADRAQASIKLQN------------FTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKV 91 (281)
Q Consensus 24 ~y~~al~~~p~~~~~~~~~a~~~~~l~~------------~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~ 91 (281)
-|++.+..+|+|...|+.+....-.+-. .+.-+..+++||+.+|++...++.+-.+.....+-++...
T Consensus 7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~ 86 (321)
T PF08424_consen 7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAK 86 (321)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3566666667766666666555444422 3444556666666666666666666666666666666666
Q ss_pred HHHHhhhcCCCChhH
Q 023550 92 ALEKGASLAPGDSRF 106 (281)
Q Consensus 92 ~~~~a~~l~p~~~~~ 106 (281)
-+++++..+|++..+
T Consensus 87 ~we~~l~~~~~~~~L 101 (321)
T PF08424_consen 87 KWEELLFKNPGSPEL 101 (321)
T ss_pred HHHHHHHHCCCChHH
Confidence 666666666665543
No 335
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.95 E-value=0.27 Score=35.58 Aligned_cols=58 Identities=22% Similarity=0.311 Sum_probs=47.0
Q ss_pred HHHHHccCHHHHHHHHHHHHHcCCC---------cHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCC
Q 023550 44 QASIKLQNFTEAVADANRAIELEPS---------MSKAYWRKATACMKLEEYETAKVALEKGASLAP 101 (281)
Q Consensus 44 ~~~~~l~~~~~A~~~~~~al~l~p~---------~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p 101 (281)
.-.++.|+|.+|++.+.+.+..... ...+.+.+|..+...|++++|+..+++++++..
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3456789999999988888865421 246788899999999999999999999998754
No 336
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.93 E-value=1 Score=43.15 Aligned_cols=101 Identities=19% Similarity=0.043 Sum_probs=81.2
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHH-HHHHcCCCcHHHHHHH------HHHHH
Q 023550 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN-RAIELEPSMSKAYWRK------ATACM 81 (281)
Q Consensus 9 g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~-~al~l~p~~~~a~~~~------g~~~~ 81 (281)
.......++...+.-.+..++..+|++...+.++|.+....|....++..+. .+....|.+......+ |..+.
T Consensus 74 si~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (620)
T COG3914 74 SILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLK 153 (620)
T ss_pred HhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHH
Confidence 3444556777788888999999999999999999999999887666665544 5899999987766666 88888
Q ss_pred HhhcHHHHHHHHHHhhhcCCCChhHHHH
Q 023550 82 KLEEYETAKVALEKGASLAPGDSRFTNL 109 (281)
Q Consensus 82 ~~g~~~~A~~~~~~a~~l~p~~~~~~~~ 109 (281)
.+|+..++..+..++.++.|.++.....
T Consensus 154 ~l~~~~~~~~~l~~~~d~~p~~~~~~~~ 181 (620)
T COG3914 154 LLGRTAEAELALERAVDLLPKYPRVLGA 181 (620)
T ss_pred HhccHHHHHHHHHHHHHhhhhhhhhHhH
Confidence 8888999999999999999988765433
No 337
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.72 E-value=0.66 Score=43.50 Aligned_cols=95 Identities=14% Similarity=0.053 Sum_probs=74.9
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHH
Q 023550 10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETA 89 (281)
Q Consensus 10 ~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A 89 (281)
......||.-.|-+....++...|.++.....++.....+|.|+.+.+++..+-..-..-..+...+-..++.+|+++.|
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 34567899999999999999999999999999999999999999999988766654444445666667788889999998
Q ss_pred HHHHHHhhhcCCCCh
Q 023550 90 KVALEKGASLAPGDS 104 (281)
Q Consensus 90 ~~~~~~a~~l~p~~~ 104 (281)
...-.-.+.-+-+++
T Consensus 377 ~s~a~~~l~~eie~~ 391 (831)
T PRK15180 377 LSTAEMMLSNEIEDE 391 (831)
T ss_pred HHHHHHHhccccCCh
Confidence 877666555443333
No 338
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.63 E-value=1.9 Score=35.75 Aligned_cols=59 Identities=19% Similarity=0.161 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHhhcHHHHHHHHHHh
Q 023550 38 LFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKG 96 (281)
Q Consensus 38 ~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~a 96 (281)
..+.+|..+...+++++|+..++.++..-.+. ..+-+|+|.+++.+|++++|+..+...
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~ 152 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTI 152 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence 34568888899999999999999998654432 557789999999999999999887653
No 339
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=93.46 E-value=0.3 Score=38.38 Aligned_cols=52 Identities=23% Similarity=0.186 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHH
Q 023550 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE 87 (281)
Q Consensus 36 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~ 87 (281)
.+..+.+|..++..|+|.-|.+.++.++..+|++..+...++.+|.++|.-.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 4556667777777777777777777777777777777777777777776543
No 340
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.44 E-value=1.6 Score=42.37 Aligned_cols=92 Identities=17% Similarity=0.153 Sum_probs=64.9
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-----cHHHHHHHHHHHHHhh
Q 023550 10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS-----MSKAYWRKATACMKLE 84 (281)
Q Consensus 10 ~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~-----~~~a~~~~g~~~~~~g 84 (281)
...-.-|-++..-..|++.+++---.+....|.|..+....-|+++.+.|++.+.+.+- ....|+.....-+.-.
T Consensus 485 DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~ 564 (835)
T KOG2047|consen 485 DLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGT 564 (835)
T ss_pred HHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCC
Confidence 33334556666677777877776667777788888887777788888888888877642 2344555666666666
Q ss_pred cHHHHHHHHHHhhhcCC
Q 023550 85 EYETAKVALEKGASLAP 101 (281)
Q Consensus 85 ~~~~A~~~~~~a~~l~p 101 (281)
..+.|...|++|++..|
T Consensus 565 klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 565 KLERARDLFEQALDGCP 581 (835)
T ss_pred CHHHHHHHHHHHHhcCC
Confidence 77788888888888777
No 341
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=93.42 E-value=0.96 Score=41.32 Aligned_cols=99 Identities=13% Similarity=0.106 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CH-HHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-----CcHHHHHHH
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPN-SA-ELFADRAQASIKLQNFTEAVADANRAIELEP-----SMSKAYWRK 76 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~-~~-~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p-----~~~~a~~~~ 76 (281)
.++.....+.++|-|..|+++..-.+.++|. |+ .+++.+-...++.++|+--++.++....... ..+..-|..
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~ 184 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI 184 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence 4667788889999999999999999999999 76 3444555666677888887887776655211 234577899
Q ss_pred HHHHHHhhcH---------------HHHHHHHHHhhhcCCC
Q 023550 77 ATACMKLEEY---------------ETAKVALEKGASLAPG 102 (281)
Q Consensus 77 g~~~~~~g~~---------------~~A~~~~~~a~~l~p~ 102 (281)
+.+++.+++- +.|...+++|+...|.
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 9999999998 8999999999998873
No 342
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.08 E-value=1.3 Score=37.30 Aligned_cols=61 Identities=21% Similarity=0.163 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcH-HHHHHHHH
Q 023550 18 FELAYDLYSQAIEISPN------SAELFADRAQASIKLQNFTEAVADANRAIELEPSMS-KAYWRKAT 78 (281)
Q Consensus 18 y~~Al~~y~~al~~~p~------~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~-~a~~~~g~ 78 (281)
+..|++.|.+++..... ...+++.+|..+.++|++++|+.++.+++....... ..+..+|.
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 67788888888876432 257888999999999999999999999997664433 24444443
No 343
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.07 E-value=2.2 Score=37.37 Aligned_cols=96 Identities=22% Similarity=0.234 Sum_probs=70.6
Q ss_pred HHHhcCHHHHHHHHHHHHhcC----CCC----HHHHHHHHHHHHHcc-CHHHHHHHHHHHHHc----CCC----------
Q 023550 12 AFIDDYFELAYDLYSQAIEIS----PNS----AELFADRAQASIKLQ-NFTEAVADANRAIEL----EPS---------- 68 (281)
Q Consensus 12 ~~~~~~y~~Al~~y~~al~~~----p~~----~~~~~~~a~~~~~l~-~~~~A~~~~~~al~l----~p~---------- 68 (281)
+.++||++.|..+|.++-... |+. ...+++.|...+..+ ++++|..++++++.+ ...
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 568899999999999986653 333 466888899999999 999999999999987 321
Q ss_pred cHHHHHHHHHHHHHhhcHHH---HHHHHHHhhhcCCCChhHH
Q 023550 69 MSKAYWRKATACMKLEEYET---AKVALEKGASLAPGDSRFT 107 (281)
Q Consensus 69 ~~~a~~~~g~~~~~~g~~~~---A~~~~~~a~~l~p~~~~~~ 107 (281)
...++..++.+|...+.++. |...++.+....|+.+...
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~ 124 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF 124 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 24567778888988877654 4445555555566655544
No 344
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=92.97 E-value=0.31 Score=28.64 Aligned_cols=32 Identities=13% Similarity=0.024 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHH--HhhhcCCC
Q 023550 71 KAYWRKATACMKLEEYETAKVALE--KGASLAPG 102 (281)
Q Consensus 71 ~a~~~~g~~~~~~g~~~~A~~~~~--~a~~l~p~ 102 (281)
+.++.+|..++..|+|++|+..|+ -+..+++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 345566666666666666666633 55555443
No 345
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.95 E-value=0.18 Score=30.09 Aligned_cols=28 Identities=25% Similarity=0.504 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHc
Q 023550 38 LFADRAQASIKLQNFTEAVADANRAIEL 65 (281)
Q Consensus 38 ~~~~~a~~~~~l~~~~~A~~~~~~al~l 65 (281)
.|..+|.+-+..++|.+|+.+|.+++.+
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3445555555555555555555555543
No 346
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=92.88 E-value=0.47 Score=32.91 Aligned_cols=31 Identities=32% Similarity=0.259 Sum_probs=23.3
Q ss_pred ChhHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 023550 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (281)
Q Consensus 1 ma~~~~~~g~~~~~~~~y~~Al~~y~~al~~ 31 (281)
||..+..+|..+-+.|+|++|+.+|+++++.
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3566777888888888888888887776654
No 347
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=92.83 E-value=0.4 Score=45.86 Aligned_cols=72 Identities=19% Similarity=0.133 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 023550 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK 76 (281)
Q Consensus 5 ~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~ 76 (281)
+.+.|+.+...+-..+|-.++.++|.++...+..++.+|++++.+++...|++.++.|+.++|+++.+.-.+
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l 716 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSL 716 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHH
Confidence 457788888888889999999999999988899999999999999999999999999999999987765443
No 348
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=92.79 E-value=0.84 Score=32.96 Aligned_cols=69 Identities=14% Similarity=0.088 Sum_probs=52.7
Q ss_pred cCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcCC----C----CeeeeccccccccccCcceEEEe-CcEEEEEE
Q 023550 180 QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG----E----EAYHFQPRLFGKIIPAKCRYEVL-STKVEIRL 248 (281)
Q Consensus 180 Qt~~~v~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~~----~----~~~~~~~~L~~~I~p~~s~~~v~-~~kiei~L 248 (281)
-+++.-.|.+-+.|.++++++|++..+.|.|+-.... + ..|.-.+.|...|+++.-+-.+. ++.+.|..
T Consensus 12 ~~~~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 12 NSSEPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred CCCCcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence 4566777889999999999999999999999864321 1 12445567999999998888888 56776654
No 349
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=92.60 E-value=0.86 Score=36.95 Aligned_cols=75 Identities=20% Similarity=0.239 Sum_probs=55.1
Q ss_pred cccccCCC-eEEEEEEecCCCCcc-eEEEEeeeEEEEEEEcCCCCeeeeccccccccccCcceEEEeCcEEEEEEeecCC
Q 023550 176 HEFYQKPE-EVVVTVFAKGIPAKN-VTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP 253 (281)
Q Consensus 176 ~~w~Qt~~-~v~i~v~~k~~~~~~-~~v~~~~~~l~~~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~ 253 (281)
.+=.+.++ .++|.--+.||..++ +.|.+..+...|.+... ..|.=.+.|..+ .++...+.+..+-+||.|+|.+.
T Consensus 94 vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~--~~~~krv~L~~~-~~e~~~~t~nNgILEIri~~~~~ 170 (177)
T PF05455_consen 94 VDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVG--EKYLKRVALPWP-DPEITSATFNNGILEIRIRRTEE 170 (177)
T ss_pred eeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecC--CceEeeEecCCC-ccceeeEEEeCceEEEEEeecCC
Confidence 34444555 677766789998888 88888877666666433 245567888888 46666889999999999999764
No 350
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.43 E-value=2.5 Score=40.94 Aligned_cols=92 Identities=16% Similarity=0.018 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhc-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHcCCCcHHHHHHH
Q 023550 5 LEKKAKEAFIDD-----YFELAYDLYSQAIEISPNSAELFADRAQASIKLQ---NFTEAVADANRAIELEPSMSKAYWRK 76 (281)
Q Consensus 5 ~~~~g~~~~~~~-----~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~---~~~~A~~~~~~al~l~p~~~~a~~~~ 76 (281)
....|..|++.. ++..|+.+|.++-+.. ++...+.+|.++..-. ++..|..+|..|...+ +..+.+++
T Consensus 291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~l 366 (552)
T KOG1550|consen 291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRL 366 (552)
T ss_pred ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHH
Confidence 345677777743 7899999999998875 4567788888887765 6789999999998776 55688999
Q ss_pred HHHHHHh----hcHHHHHHHHHHhhhcC
Q 023550 77 ATACMKL----EEYETAKVALEKGASLA 100 (281)
Q Consensus 77 g~~~~~~----g~~~~A~~~~~~a~~l~ 100 (281)
|.||..- .+...|..+|.++.+.+
T Consensus 367 a~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 367 ALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 9888754 47889999999998887
No 351
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=92.37 E-value=3.3 Score=31.57 Aligned_cols=80 Identities=14% Similarity=0.114 Sum_probs=54.2
Q ss_pred HHHHHHHHH--HHccCHHHHHHHHHHHHHcCCC------------cHHHHHHHHHHHHHhhcHHHHHHHHHHhhhc----
Q 023550 38 LFADRAQAS--IKLQNFTEAVADANRAIELEPS------------MSKAYWRKATACMKLEEYETAKVALEKGASL---- 99 (281)
Q Consensus 38 ~~~~~a~~~--~~l~~~~~A~~~~~~al~l~p~------------~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l---- 99 (281)
.|..++..- +.-|-|++|...+++|...... ++-++-.++.++..+|+|++++..-.+++..
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence 444444443 3447899999999999986532 3667888999999999999988776666543
Q ss_pred -CCCChhHHHHHHHHHHHH
Q 023550 100 -APGDSRFTNLIKECEERI 117 (281)
Q Consensus 100 -~p~~~~~~~~l~~~~~~l 117 (281)
+-+....+.|+..+-.+-
T Consensus 89 GEL~qdeGklWIaaVfsra 107 (144)
T PF12968_consen 89 GELHQDEGKLWIAAVFSRA 107 (144)
T ss_dssp --TTSTHHHHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHH
Confidence 223455678877765543
No 352
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=92.27 E-value=0.41 Score=40.73 Aligned_cols=108 Identities=17% Similarity=0.101 Sum_probs=66.6
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCCH------------HHHHHHHHHHHHccCH-HHH-HHHHHHHHH-cC-CCc--HHHH
Q 023550 12 AFIDDYFELAYDLYSQAIEISPNSA------------ELFADRAQASIKLQNF-TEA-VADANRAIE-LE-PSM--SKAY 73 (281)
Q Consensus 12 ~~~~~~y~~Al~~y~~al~~~p~~~------------~~~~~~a~~~~~l~~~-~~A-~~~~~~al~-l~-p~~--~~a~ 73 (281)
+|.-|+|+.|+++..-+|..+-.-| +-...-|......|+- +-. ...+..... .+ |+. ++.|
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~ 172 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY 172 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence 4567999999999999999843221 2223334444444541 111 111222211 11 333 3344
Q ss_pred HHHHHHHH---------HhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 74 WRKATACM---------KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 74 ~~~g~~~~---------~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
-..|..+. ..++...|+.+|++|+.++|+ ..++..+.++..+++..
T Consensus 173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k-~GVK~~i~~l~~~lr~~ 227 (230)
T PHA02537 173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK-CGVKKDIERLERRLKAL 227 (230)
T ss_pred HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHhhc
Confidence 44555553 346788999999999999985 56888899998888754
No 353
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.25 E-value=2.4 Score=41.13 Aligned_cols=95 Identities=15% Similarity=0.044 Sum_probs=73.7
Q ss_pred hcCHHHHHHHHHHHHh-------cCCCCHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023550 15 DDYFELAYDLYSQAIE-------ISPNSAELFADRAQASIKLQ-----NFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 15 ~~~y~~Al~~y~~al~-------~~p~~~~~~~~~a~~~~~l~-----~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
.+|.+.|+.+|..+.. .. ++.+.+.+|.+|.+.. ++..|+..+.++-.++. +.+.+.+|.++..
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~--~~a~~~lg~~~~~ 337 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN--PDAQYLLGVLYET 337 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC--chHHHHHHHHHHc
Confidence 4689999999999977 33 4557888999998853 78889999999988774 4588999999987
Q ss_pred hh---cHHHHHHHHHHhhhcCCCChhHHHHHHHHHH
Q 023550 83 LE---EYETAKVALEKGASLAPGDSRFTNLIKECEE 115 (281)
Q Consensus 83 ~g---~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 115 (281)
-. ++..|..+|..|....- .....+++.|..
T Consensus 338 g~~~~d~~~A~~yy~~Aa~~G~--~~A~~~la~~y~ 371 (552)
T KOG1550|consen 338 GTKERDYRRAFEYYSLAAKAGH--ILAIYRLALCYE 371 (552)
T ss_pred CCccccHHHHHHHHHHHHHcCC--hHHHHHHHHHHH
Confidence 76 67899999998876553 445556666643
No 354
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=92.03 E-value=1.1 Score=42.15 Aligned_cols=66 Identities=14% Similarity=0.186 Sum_probs=56.2
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHcCCCcHHHHHH
Q 023550 10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQN-FTEAVADANRAIELEPSMSKAYWR 75 (281)
Q Consensus 10 ~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~-~~~A~~~~~~al~l~p~~~~a~~~ 75 (281)
..+-+.+.|.+--..|.+++..+|+++++|+.-|.-.+..+. .+.|.+.+.++|+.+|+.+..|..
T Consensus 113 ~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 113 AFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKE 179 (568)
T ss_pred HHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHH
Confidence 333445559999999999999999999999999988888775 999999999999999998776643
No 355
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=91.91 E-value=4.9 Score=36.96 Aligned_cols=93 Identities=18% Similarity=0.138 Sum_probs=67.4
Q ss_pred HHHHhcCHHHHHHHHHHHHhcC---CCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023550 11 EAFIDDYFELAYDLYSQAIEIS---PNS-----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 11 ~~~~~~~y~~Al~~y~~al~~~---p~~-----~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
.....|+|+.|+++.+...... ++- ..++...+...+. -+...|..+...++++.|+..-+-..-+.+|+.
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~ 275 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD-ADPASARDDALEANKLAPDLVPAAVVAARALFR 275 (531)
T ss_pred HHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCccchHHHHHHHHHHh
Confidence 3556788888888877665431 211 1222223333322 357788888899999999998899999999999
Q ss_pred hhcHHHHHHHHHHhhhcCCCCh
Q 023550 83 LEEYETAKVALEKGASLAPGDS 104 (281)
Q Consensus 83 ~g~~~~A~~~~~~a~~l~p~~~ 104 (281)
.|+..++-..++.+.+.+|...
T Consensus 276 d~~~rKg~~ilE~aWK~ePHP~ 297 (531)
T COG3898 276 DGNLRKGSKILETAWKAEPHPD 297 (531)
T ss_pred ccchhhhhhHHHHHHhcCCChH
Confidence 9999999999999999998643
No 356
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.89 E-value=2.7 Score=36.50 Aligned_cols=90 Identities=9% Similarity=0.077 Sum_probs=77.4
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHH
Q 023550 16 DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFT-EAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALE 94 (281)
Q Consensus 16 ~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~-~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~ 94 (281)
.+..+-++++++.+..+|.|..+|-.|-.+...+|++. .-++....++..+..+..+|-.+-.++...+.|+.=+.+..
T Consensus 92 ~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~ 171 (318)
T KOG0530|consen 92 SDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYAD 171 (318)
T ss_pred HHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 45667789999999999999999999988888999888 88999999999999999999999999999999998888888
Q ss_pred HhhhcCCCChh
Q 023550 95 KGASLAPGDSR 105 (281)
Q Consensus 95 ~a~~l~p~~~~ 105 (281)
+.++.+-.|..
T Consensus 172 ~Lle~Di~NNS 182 (318)
T KOG0530|consen 172 ELLEEDIRNNS 182 (318)
T ss_pred HHHHHhhhccc
Confidence 88776654433
No 357
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=91.72 E-value=0.29 Score=29.15 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhhhcC
Q 023550 71 KAYWRKATACMKLEEYETAKVALEKGASLA 100 (281)
Q Consensus 71 ~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~ 100 (281)
+++.++|.+-...++|.+|+..|++++.+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 578899999999999999999999998753
No 358
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.49 E-value=1.3 Score=38.95 Aligned_cols=62 Identities=13% Similarity=0.100 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL 65 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l 65 (281)
.+...+..+...++++.++..+.+.+..+|-+-..|..+..+|++.|+...|+..|++.-.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 45567888889999999999999999999999999999999999999999999999987764
No 359
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=91.44 E-value=7.6 Score=37.92 Aligned_cols=108 Identities=20% Similarity=0.177 Sum_probs=87.8
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-------------------HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS-------------------AELFADRAQASIKLQNFTEAVADANRA 62 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~-------------------~~~~~~~a~~~~~l~~~~~A~~~~~~a 62 (281)
|..|..-|..-++.++++.|+++..+|... |.. ..+|...+......|-++.....|++.
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdri 503 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRI 503 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 445666777778889999999999998765 222 345777788888889999999999999
Q ss_pred HHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHH
Q 023550 63 IELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLI 110 (281)
Q Consensus 63 l~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l 110 (281)
+.+.--.+....+.|..+.....+++|.+.|++++.+.+=....--|.
T Consensus 504 idLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~ 551 (835)
T KOG2047|consen 504 IDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWN 551 (835)
T ss_pred HHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHH
Confidence 999988899999999999999999999999999999876443333333
No 360
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=91.27 E-value=0.44 Score=42.22 Aligned_cols=71 Identities=8% Similarity=0.160 Sum_probs=59.4
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 023550 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFAD-RAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK 76 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~-~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~ 76 (281)
.+-+.-..+.|.|.+--..|.+++..+|.|+++|.. .+.-+.-.++++.+...+.++++++|..+..|+..
T Consensus 111 ~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 111 SQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 344455556778999999999999999999999987 56667778999999999999999999998877643
No 361
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=91.26 E-value=3.5 Score=36.99 Aligned_cols=81 Identities=11% Similarity=0.069 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH---hhcHHHHHHHHH
Q 023550 18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK---LEEYETAKVALE 94 (281)
Q Consensus 18 y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~---~g~~~~A~~~~~ 94 (281)
.+.-+..|.+||+.+|++..++..+-.+..++.+-++...-+++++..+|.+...|..+-..... .-.+......|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 56778999999999999999999999999999999999999999999999987777654333222 234556666666
Q ss_pred Hhhh
Q 023550 95 KGAS 98 (281)
Q Consensus 95 ~a~~ 98 (281)
++++
T Consensus 127 ~~l~ 130 (321)
T PF08424_consen 127 KCLR 130 (321)
T ss_pred HHHH
Confidence 6654
No 362
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=91.22 E-value=0.79 Score=26.91 Aligned_cols=20 Identities=15% Similarity=0.132 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhcCHHHHHHH
Q 023550 5 LEKKAKEAFIDDYFELAYDL 24 (281)
Q Consensus 5 ~~~~g~~~~~~~~y~~Al~~ 24 (281)
++..|-.++..|+|++|+..
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 34444444555555555555
No 363
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=91.19 E-value=1.2 Score=41.13 Aligned_cols=96 Identities=10% Similarity=0.080 Sum_probs=62.4
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCC---------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHH
Q 023550 6 EKKAKEAFIDDYFELAYDLYSQAIEISP---------NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK 76 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p---------~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~ 76 (281)
....+.+.-.|||..|++.++.. +.+. -+...++..|.||+.+++|.+|+..+...+.--......+..+
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~ 204 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQR 204 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 44567788899999999997662 2222 2356789999999999999999999998774211111111111
Q ss_pred H-HHHHHhhcHHHHHHHHHHhhhcCCC
Q 023550 77 A-TACMKLEEYETAKVALEKGASLAPG 102 (281)
Q Consensus 77 g-~~~~~~g~~~~A~~~~~~a~~l~p~ 102 (281)
. +.-.-.+..++....+.-++.+.|.
T Consensus 205 ~~q~d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 205 SYQYDQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred cchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence 1 1111234556666677777777775
No 364
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.13 E-value=0.29 Score=26.29 Aligned_cols=22 Identities=23% Similarity=0.107 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhhcHHHHHHHH
Q 023550 72 AYWRKATACMKLEEYETAKVAL 93 (281)
Q Consensus 72 a~~~~g~~~~~~g~~~~A~~~~ 93 (281)
+++.+|.++..+|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3445555555555555555444
No 365
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.12 E-value=1.4 Score=40.33 Aligned_cols=95 Identities=16% Similarity=0.114 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------CCcHHH
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPN---SAELFADRAQASIKLQNFTEAVADANRAIELE--------PSMSKA 72 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~---~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~--------p~~~~a 72 (281)
.+.+.|.-|+.-|+.+.|++.|.++-..--+ ....+.+.-.+-+-+|+|........+|...- .-.++.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 3556788888899999999999996655322 25677788888888999999988888887652 123557
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhhh
Q 023550 73 YWRKATACMKLEEYETAKVALEKGAS 98 (281)
Q Consensus 73 ~~~~g~~~~~~g~~~~A~~~~~~a~~ 98 (281)
....|.+.+.+++|..|..+|-.+..
T Consensus 232 ~C~agLa~L~lkkyk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 232 KCAAGLANLLLKKYKSAAKYFLLAEF 257 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 77889999999999999999877643
No 366
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=90.92 E-value=2.9 Score=42.95 Aligned_cols=90 Identities=13% Similarity=0.074 Sum_probs=68.9
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhh-----cHHHHH
Q 023550 16 DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE-----EYETAK 90 (281)
Q Consensus 16 ~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g-----~~~~A~ 90 (281)
..+.+|+..|++. .-.|.-+-=|...|.+|.++|+|.+-+.++..|++..|..+..-+.+-.+.+++. +-..|.
T Consensus 533 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (932)
T PRK13184 533 RDFTQALSEFSYL-HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREAL 611 (932)
T ss_pred HHHHHHHHHHHHh-cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888773 3456677789999999999999999999999999999988776665555555543 234566
Q ss_pred HHHHHhhhcCCCChhH
Q 023550 91 VALEKGASLAPGDSRF 106 (281)
Q Consensus 91 ~~~~~a~~l~p~~~~~ 106 (281)
...--++...|.....
T Consensus 612 ~~~~~~~~~~~~~~~~ 627 (932)
T PRK13184 612 VFMLLALWIAPEKISS 627 (932)
T ss_pred HHHHHHHHhCcccccc
Confidence 7777788888876543
No 367
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.90 E-value=0.94 Score=41.86 Aligned_cols=98 Identities=20% Similarity=0.140 Sum_probs=65.8
Q ss_pred ChhHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----------CCCCHHHHHHHHHHHHHccCH----------HHHHHHH
Q 023550 1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEI-----------SPNSAELFADRAQASIKLQNF----------TEAVADA 59 (281)
Q Consensus 1 ma~~~~~~g~~~~~~~~y~~Al~~y~~al~~-----------~p~~~~~~~~~a~~~~~l~~~----------~~A~~~~ 59 (281)
|+-.+..+|.+++..+.|.+|+.++-.|-+. --+.+.+-...-+||+++++. ..|...|
T Consensus 162 mglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf 241 (568)
T KOG2561|consen 162 MGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGF 241 (568)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhh
Confidence 5667888999999999999999887665443 222244445577889888653 2333333
Q ss_pred HHHHHcC---------CCc------HHHHHHHHHHHHHhhcHHHHHHHHHHhhh
Q 023550 60 NRAIELE---------PSM------SKAYWRKATACMKLEEYETAKVALEKGAS 98 (281)
Q Consensus 60 ~~al~l~---------p~~------~~a~~~~g~~~~~~g~~~~A~~~~~~a~~ 98 (281)
.++..-+ +.. ...++.-|+..|+.|+-++|..+|+.+..
T Consensus 242 ~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 242 ERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred hhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3333211 111 23445569999999999999999988754
No 368
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.74 E-value=4.4 Score=37.27 Aligned_cols=104 Identities=10% Similarity=0.045 Sum_probs=81.0
Q ss_pred HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhc----HH
Q 023550 14 IDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ--NFTEAVADANRAIELEPSMSKAYWRKATACMKLEE----YE 87 (281)
Q Consensus 14 ~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~--~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~----~~ 87 (281)
+..-.++-+.+...+++.+|++..+|..|..++.+.+ ++..-++.++++++.+|.+..+|-.+-.+...... ..
T Consensus 87 k~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~ 166 (421)
T KOG0529|consen 87 KQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEK 166 (421)
T ss_pred HHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccch
Confidence 3445677888999999999999999999999999876 47889999999999999988887666555444332 45
Q ss_pred HHHHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 023550 88 TAKVALEKGASLAPGDSRFTNLIKECEERI 117 (281)
Q Consensus 88 ~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (281)
+=+.+..+++.-++.|-.+|-....+...+
T Consensus 167 ~El~ftt~~I~~nfSNYsaWhyRs~lL~~l 196 (421)
T KOG0529|consen 167 EELEFTTKLINDNFSNYSAWHYRSLLLSTL 196 (421)
T ss_pred hHHHHHHHHHhccchhhhHHHHHHHHHHHh
Confidence 566777888888888877776666654433
No 369
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=90.48 E-value=2.6 Score=31.51 Aligned_cols=66 Identities=14% Similarity=0.082 Sum_probs=53.0
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHHhhc-----------HHHHHHHHHHhhhcCCCChhHH
Q 023550 42 RAQASIKLQNFTEAVADANRAIELEPSMS---KAYWRKATACMKLEE-----------YETAKVALEKGASLAPGDSRFT 107 (281)
Q Consensus 42 ~a~~~~~l~~~~~A~~~~~~al~l~p~~~---~a~~~~g~~~~~~g~-----------~~~A~~~~~~a~~l~p~~~~~~ 107 (281)
+|..++..|++-+|++..+..+...+.+. ..+..-|..++.+.. .-.|+++|.++..+.|..+...
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57788899999999999999999887765 556667888877653 4578899999999999875433
No 370
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=90.37 E-value=4.4 Score=40.68 Aligned_cols=95 Identities=16% Similarity=0.096 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH----------HhcCCCC----------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQA----------IEISPNS----------AELFADRAQASIKLQNFTEAVADANRAI 63 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~a----------l~~~p~~----------~~~~~~~a~~~~~l~~~~~A~~~~~~al 63 (281)
.+++.|..+-..+|.+.|+++|.++ |..+|.. ..+|.--|+.+...|+.+.|+..|..|-
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 4677788888889999999999875 2234433 3445556777788899999998888765
Q ss_pred Hc---------------------CCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhh
Q 023550 64 EL---------------------EPSMSKAYWRKATACMKLEEYETAKVALEKGAS 98 (281)
Q Consensus 64 ~l---------------------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~ 98 (281)
.. ...+..+-|.+|..|...|++.+|+..|.+|..
T Consensus 940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 32 234667889999999999999999998877644
No 371
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=90.37 E-value=1.4 Score=38.16 Aligned_cols=45 Identities=20% Similarity=0.084 Sum_probs=25.3
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhc
Q 023550 55 AVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (281)
Q Consensus 55 A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l 99 (281)
|+.+|.+|+.+.|.++..|..+|.++...|+.-.|+-+|-+++-.
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~ 45 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV 45 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhc
Confidence 445566666666666666666666666666666666555555543
No 372
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.34 E-value=7.7 Score=36.62 Aligned_cols=93 Identities=12% Similarity=0.059 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-C--HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc----------HH
Q 023550 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPN-S--AELFADRAQASIKLQNFTEAVADANRAIELEPSM----------SK 71 (281)
Q Consensus 5 ~~~~g~~~~~~~~y~~Al~~y~~al~~~p~-~--~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~----------~~ 71 (281)
..-.|..+..-+-|+.|...|..|.+.... + +.+..++|..|++.++-+.--+.++ .++|.+ +.
T Consensus 370 h~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~s~ssq~l~a~ 446 (629)
T KOG2300|consen 370 HMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALD---LIGPLNTNSLSSQRLEAS 446 (629)
T ss_pred HHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHH---hcCCCCCCcchHHHHHHH
Confidence 345677777888999999999999987433 3 3445679999999877554333222 244442 56
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhhcC
Q 023550 72 AYWRKATACMKLEEYETAKVALEKGASLA 100 (281)
Q Consensus 72 a~~~~g~~~~~~g~~~~A~~~~~~a~~l~ 100 (281)
++|..|...+..+++.+|...+.+.++..
T Consensus 447 ~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 447 ILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 88889999999999999999999998887
No 373
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.21 E-value=0.4 Score=25.75 Aligned_cols=23 Identities=17% Similarity=-0.100 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHH
Q 023550 38 LFADRAQASIKLQNFTEAVADAN 60 (281)
Q Consensus 38 ~~~~~a~~~~~l~~~~~A~~~~~ 60 (281)
+.+.+|.++..+|++++|+..++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45666777777777777766554
No 374
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=90.17 E-value=6.1 Score=34.04 Aligned_cols=62 Identities=18% Similarity=0.118 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 023550 21 AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK 82 (281)
Q Consensus 21 Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~ 82 (281)
|..+|.+|+...|.+...|.++|..+...|+.-.|+-.|-|++-...-...+.-++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999886554445566665555555
No 375
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.01 E-value=0.97 Score=42.42 Aligned_cols=97 Identities=16% Similarity=0.122 Sum_probs=77.0
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHH
Q 023550 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE 87 (281)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~ 87 (281)
.+...-..|+|+.|+..+..+-..-........-+-..+.+++++.+|...+...+...-.+.+...--+..-..+|-++
T Consensus 329 ~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d 408 (831)
T PRK15180 329 RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFD 408 (831)
T ss_pred HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHH
Confidence 45566678999999998877655433333344455677889999999999999999888788888888888888999999
Q ss_pred HHHHHHHHhhhcCCCCh
Q 023550 88 TAKVALEKGASLAPGDS 104 (281)
Q Consensus 88 ~A~~~~~~a~~l~p~~~ 104 (281)
+|..++++.+.++|...
T Consensus 409 ~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 409 KSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHHHHHhccCChhc
Confidence 99999999999988543
No 376
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=89.93 E-value=0.31 Score=43.71 Aligned_cols=78 Identities=18% Similarity=0.040 Sum_probs=64.1
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhc
Q 023550 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE 85 (281)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~ 85 (281)
.+...++.++|..|+..-..++..++....+++.++..+..+.++++|++++..+....|.+....-.+...-...++
T Consensus 281 ~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~ 358 (372)
T KOG0546|consen 281 LAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQ 358 (372)
T ss_pred hHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHH
Confidence 455667788889999888888888888889999999999999999999999999999999987665555444444433
No 377
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.82 E-value=2.7 Score=37.06 Aligned_cols=62 Identities=23% Similarity=0.199 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHh
Q 023550 35 SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKG 96 (281)
Q Consensus 35 ~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 96 (281)
..+.-+..+.-....|++.+|...+..++...|.+.++.+.++.||...|+.+.|...+...
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 34455667778888999999999999999999999999999999999999999998777654
No 378
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=89.67 E-value=3.5 Score=28.86 Aligned_cols=58 Identities=10% Similarity=0.055 Sum_probs=44.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHH---HHHHHHhhcHHHHHHHHHHh
Q 023550 39 FADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK---ATACMKLEEYETAKVALEKG 96 (281)
Q Consensus 39 ~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~---g~~~~~~g~~~~A~~~~~~a 96 (281)
.+..|.=++..++.++|+..+.++++..++....+..+ ..+|...|+|.+++.+-.+-
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q 69 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQ 69 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667788899999999999999888776655554 56778888988888765443
No 379
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=89.52 E-value=2.9 Score=29.09 Aligned_cols=30 Identities=27% Similarity=0.350 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~ 31 (281)
|..+..+|..+-+.|+|++|+.+|.++|+.
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 456788888888999999998888888764
No 380
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.38 E-value=2.3 Score=35.92 Aligned_cols=61 Identities=21% Similarity=0.138 Sum_probs=43.6
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc
Q 023550 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM 69 (281)
Q Consensus 9 g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~ 69 (281)
...+.+.+..++||.....-++..|.+......+=..|.-.|+|++|+..++.+-++.|++
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 4456677777777777777777777777666666666777777777777777777777765
No 381
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=89.24 E-value=8.2 Score=36.16 Aligned_cols=95 Identities=17% Similarity=0.052 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 023550 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSA-----ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA 79 (281)
Q Consensus 5 ~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~-----~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~ 79 (281)
+..+|-.+.+.+++++|...|.+..+...+++ +++.+|-.-.+-+++.+.-.......-+..|...-..+-.|..
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~ 88 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALV 88 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 34578999999999999999999988766653 4555666666667777777776666667778888888889999
Q ss_pred HHHhhcHHHHHHHHHHhhhc
Q 023550 80 CMKLEEYETAKVALEKGASL 99 (281)
Q Consensus 80 ~~~~g~~~~A~~~~~~a~~l 99 (281)
.++.|+|.+|+..+..-...
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~ 108 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQ 108 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhh
Confidence 99999999999998776655
No 382
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=89.22 E-value=2 Score=33.74 Aligned_cols=49 Identities=16% Similarity=0.212 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 72 AYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 72 a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
..+.++...+..|+|.-|......++..+|+|..++..+..+..+++..
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 3444444455555555555555555555555555555555554444443
No 383
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.17 E-value=1.7 Score=38.27 Aligned_cols=58 Identities=19% Similarity=0.143 Sum_probs=50.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHh
Q 023550 39 FADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKG 96 (281)
Q Consensus 39 ~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 96 (281)
+...|..|...|.+.+|++..++++.++|-+-..+..+-..|..+|+--.|...|++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 4456788888999999999999999999999999999999999999988888777664
No 384
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=89.09 E-value=8 Score=35.61 Aligned_cols=62 Identities=15% Similarity=0.147 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHH--HccCHHHHHHHHHHHHHc
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA--ELFADRAQASI--KLQNFTEAVADANRAIEL 65 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~--~~~~~~a~~~~--~l~~~~~A~~~~~~al~l 65 (281)
..+.++..+|+.++|..|...|..+...-|.+. ..+..++.+|. ..-+|.+|.+.++..+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 456789999999999999999999988533333 34555555544 456889999888876653
No 385
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.08 E-value=12 Score=36.09 Aligned_cols=92 Identities=20% Similarity=0.110 Sum_probs=71.2
Q ss_pred hcCHHHHHHHHHHHHhc------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----cCC----------
Q 023550 15 DDYFELAYDLYSQAIEI------------SPNSAELFADRAQASIKLQNFTEAVADANRAIE-----LEP---------- 67 (281)
Q Consensus 15 ~~~y~~Al~~y~~al~~------------~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~-----l~p---------- 67 (281)
...|++|.+.|.-+... +|-+.+-++..|.+....|+.+-|.....++|- +.|
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 45678888888777654 344467889999999999998888887777762 122
Q ss_pred ------C---cHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCC-ChhH
Q 023550 68 ------S---MSKAYWRKATACMKLEEYETAKVALEKGASLAPG-DSRF 106 (281)
Q Consensus 68 ------~---~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~-~~~~ 106 (281)
. ...++|+.-+.+.+.|.+..|.++++-.+.++|. |+-.
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~ 379 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLG 379 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchh
Confidence 1 2557777888888999999999999999999998 6643
No 386
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=88.85 E-value=1.1 Score=41.49 Aligned_cols=59 Identities=14% Similarity=0.167 Sum_probs=46.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC---------CCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhh
Q 023550 39 FADRAQASIKLQNFTEAVADANRAIELE---------PSMSKAYWRKATACMKLEEYETAKVALEKGAS 98 (281)
Q Consensus 39 ~~~~a~~~~~l~~~~~A~~~~~~al~l~---------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~ 98 (281)
+..+.++|..+|+|..|+..++-. .++ +-....+|..|.+|+-+++|.+|++.|...+-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999999876542 222 22456889999999999999999999987654
No 387
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.80 E-value=5.3 Score=32.52 Aligned_cols=66 Identities=18% Similarity=0.178 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCC
Q 023550 36 AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMKLEEYETAKVALEKGASLAP 101 (281)
Q Consensus 36 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~---~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p 101 (281)
..++..+|..|.+.|++++|++.|.++....-. ..+.++..-.+.+..++|.....+..++..+-.
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~ 104 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE 104 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 467889999999999999999999998876543 356788888999999999999999999877643
No 388
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=88.67 E-value=12 Score=36.13 Aligned_cols=102 Identities=15% Similarity=0.047 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHh
Q 023550 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE-PSMSKAYWRKATACMKL 83 (281)
Q Consensus 5 ~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~-p~~~~a~~~~g~~~~~~ 83 (281)
|......-...|+++.....|.+++.--..-..+|.+.+......|+..-|-..+.++.+.. +..+..++.-+......
T Consensus 300 w~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~ 379 (577)
T KOG1258|consen 300 WRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESN 379 (577)
T ss_pred HHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhh
Confidence 34444455678999999999999988777778899999999999999888888888887765 56677888888888889
Q ss_pred hcHHHHHHHHHHhhhcCCCChhH
Q 023550 84 EEYETAKVALEKGASLAPGDSRF 106 (281)
Q Consensus 84 g~~~~A~~~~~~a~~l~p~~~~~ 106 (281)
|++..|...+++.....|+.-.+
T Consensus 380 ~n~~~A~~~lq~i~~e~pg~v~~ 402 (577)
T KOG1258|consen 380 GNFDDAKVILQRIESEYPGLVEV 402 (577)
T ss_pred ccHHHHHHHHHHHHhhCCchhhh
Confidence 99999999999998877776543
No 389
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.58 E-value=4.9 Score=33.46 Aligned_cols=72 Identities=22% Similarity=0.140 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHhhcHHHHHH
Q 023550 19 ELAYDLYSQAIEI-SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS----MSKAYWRKATACMKLEEYETAKV 91 (281)
Q Consensus 19 ~~Al~~y~~al~~-~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~----~~~a~~~~g~~~~~~g~~~~A~~ 91 (281)
+.|.+.|-++-.. .=+++++.+.+|..|. ..+.++|++.+.+++++... +++.+..++.+++.+|+++.|.-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 5666666553322 2245777888877776 45778888888888887643 47888888888888888888753
No 390
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=88.35 E-value=0.75 Score=32.00 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~ 31 (281)
|..+..+|..+-+.|+|++|+.+|..+++.
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 556777888888888998888888888764
No 391
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=88.00 E-value=8.2 Score=37.18 Aligned_cols=101 Identities=16% Similarity=0.066 Sum_probs=79.8
Q ss_pred HHhcCHHH-HHHHHHHHHhcCCCCHHHHHH--HHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHH
Q 023550 13 FIDDYFEL-AYDLYSQAIEISPNSAELFAD--RAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETA 89 (281)
Q Consensus 13 ~~~~~y~~-Al~~y~~al~~~p~~~~~~~~--~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A 89 (281)
+..+..+. ++..+...+..++.++.++.. ++..+..++....+...++.++..+|.+..++..+|.++...|....+
T Consensus 41 l~~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~ 120 (620)
T COG3914 41 LNAEGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLA 120 (620)
T ss_pred hcccCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHH
Confidence 33444444 777777778888888887554 477788889999999999999999999999999999999998887777
Q ss_pred HHHHHH-hhhcCCCChhHHHHHHHH
Q 023550 90 KVALEK-GASLAPGDSRFTNLIKEC 113 (281)
Q Consensus 90 ~~~~~~-a~~l~p~~~~~~~~l~~~ 113 (281)
...+.. +....|.+..+...+-++
T Consensus 121 ~~~~~~~a~~~~~~~~~~~~~~~~~ 145 (620)
T COG3914 121 LADISEIAEWLSPDNAEFLGHLIRF 145 (620)
T ss_pred HHHHHHHHHhcCcchHHHHhhHHHH
Confidence 766665 888899988876666333
No 392
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=87.41 E-value=7.5 Score=33.89 Aligned_cols=82 Identities=17% Similarity=0.061 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhh--------
Q 023550 17 YFELAYDLYSQAIEISPNSAELFADRAQASIKL----QNFTEAVADANRAIELEPSMSKAYWRKATACMKLE-------- 84 (281)
Q Consensus 17 ~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l----~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g-------- 84 (281)
+...|+..|.++-... +..+..++|.+|..- .++.+|..+|.++...+. ..+++.++ +++..|
T Consensus 170 ~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~ 244 (292)
T COG0790 170 DDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAF 244 (292)
T ss_pred HHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhh
Confidence 3448999999998876 778889999888663 489999999999999887 88899999 777666
Q ss_pred -------cHHHHHHHHHHhhhcCCCC
Q 023550 85 -------EYETAKVALEKGASLAPGD 103 (281)
Q Consensus 85 -------~~~~A~~~~~~a~~l~p~~ 103 (281)
+...|...+..+....+..
T Consensus 245 ~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 245 LTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred cccccCCCHHHHHHHHHHHHHcCChh
Confidence 7777888888777666543
No 393
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.27 E-value=21 Score=33.05 Aligned_cols=109 Identities=16% Similarity=0.141 Sum_probs=81.2
Q ss_pred HHHHhcCH-HHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHc-----------cCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 023550 11 EAFIDDYF-ELAYDLYSQAIEISPNSAELFADRAQA-SIKL-----------QNFTEAVADANRAIELEPSMSKAYWRKA 77 (281)
Q Consensus 11 ~~~~~~~y-~~Al~~y~~al~~~p~~~~~~~~~a~~-~~~l-----------~~~~~A~~~~~~al~l~p~~~~a~~~~g 77 (281)
..-+.|.| .+++++=.+.+..+|+...+|..|=.+ ..++ .-.++-+.....+++.+|+..-+|+.+.
T Consensus 37 ~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~ 116 (421)
T KOG0529|consen 37 KKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRK 116 (421)
T ss_pred HHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 33445556 457788888888899887666543333 2222 2456667788889999999999999999
Q ss_pred HHHHHhhc--HHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHh
Q 023550 78 TACMKLEE--YETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (281)
Q Consensus 78 ~~~~~~g~--~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (281)
.++.+.+. +..=++.++++++.+|.+-..|...+.+....+.
T Consensus 117 w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~ 160 (421)
T KOG0529|consen 117 WVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAER 160 (421)
T ss_pred HHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhc
Confidence 99998774 6788889999999999998888777776555444
No 394
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=87.27 E-value=2 Score=40.81 Aligned_cols=84 Identities=17% Similarity=0.124 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhh---cHHHHHHHHHHhhhcCCCChhHHHHHHHH
Q 023550 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE---EYETAKVALEKGASLAPGDSRFTNLIKEC 113 (281)
Q Consensus 37 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g---~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 113 (281)
+.+..-|+-.+.......|+.+|.+++...|.....+..++.++++.+ +.-.|+.....+++++|....++.|+.++
T Consensus 375 e~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~a 454 (758)
T KOG1310|consen 375 EKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARA 454 (758)
T ss_pred HHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHH
Confidence 334444444444566788999999999999999999999999999875 45567777888999999988888888888
Q ss_pred HHHHHhh
Q 023550 114 EERIAEE 120 (281)
Q Consensus 114 ~~~l~~~ 120 (281)
...|...
T Consensus 455 L~el~r~ 461 (758)
T KOG1310|consen 455 LNELTRY 461 (758)
T ss_pred HHHHhhH
Confidence 7777665
No 395
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=87.12 E-value=2.8 Score=36.04 Aligned_cols=62 Identities=15% Similarity=0.154 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHHhhcHHHHHHHHHHhh
Q 023550 36 AELFADRAQASIKLQNFTEAVADANRAIELEP------SMSKAYWRKATACMKLEEYETAKVALEKGA 97 (281)
Q Consensus 36 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p------~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~ 97 (281)
..+...+|.-|+.+|+|++|+..++.+..... -.......+..|+..+|+.+..+...-+.+
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 67888999999999999999999999865532 135677778899999999888877655443
No 396
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=86.73 E-value=1.5 Score=29.67 Aligned_cols=30 Identities=47% Similarity=0.490 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~ 31 (281)
|..+..+|..+-+.|+|++|+.+|.+++..
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 345677788888888888888888887764
No 397
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.01 E-value=21 Score=33.81 Aligned_cols=115 Identities=14% Similarity=0.030 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHHhc--CHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHH-ccCHHHHHHHHHHHHHcCC---Cc----
Q 023550 3 TDLEKKAKEAFIDD--YFELAYDLYSQAIEISPNS---AELFADRAQASIK-LQNFTEAVADANRAIELEP---SM---- 69 (281)
Q Consensus 3 ~~~~~~g~~~~~~~--~y~~Al~~y~~al~~~p~~---~~~~~~~a~~~~~-l~~~~~A~~~~~~al~l~p---~~---- 69 (281)
..+...|..+-..+ +...+|++++..+...|.+ +....++|..++. .++++.|...+++|+.+-. .+
T Consensus 8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvK 87 (629)
T KOG2300|consen 8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVK 87 (629)
T ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhh
Confidence 45566666666777 7888999999888877665 3445556655443 6889999999999987653 32
Q ss_pred HHHHHHHHHHHHHhh-cHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 70 SKAYWRKATACMKLE-EYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 70 ~~a~~~~g~~~~~~g-~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
..++-.++.+|.+.. .+..|...+++++++..+.+ .|-.+...++.+.
T Consensus 88 f~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p---~wsckllfQLaql 136 (629)
T KOG2300|consen 88 FQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP---YWSCKLLFQLAQL 136 (629)
T ss_pred hHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc---hhhHHHHHHHHHH
Confidence 345566788888877 78889999999999987766 4555554444444
No 398
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=85.96 E-value=1.6 Score=45.46 Aligned_cols=98 Identities=26% Similarity=0.336 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHHHhcCHHHHHH------HHHHH-HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------
Q 023550 2 ATDLEKKAKEAFIDDYFELAYD------LYSQA-IEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE-------- 66 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~------~y~~a-l~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~-------- 66 (281)
+...+..|.....++.+.+|.+ +++.. ..+.|.....|..++..+.+++++++|+....+++-+.
T Consensus 932 a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds 1011 (1236)
T KOG1839|consen 932 AKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS 1011 (1236)
T ss_pred hhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC
Confidence 4567888999999999998888 55533 22367778899999999999999999999998887553
Q ss_pred CCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhc
Q 023550 67 PSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (281)
Q Consensus 67 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l 99 (281)
|+....+-.++...+..++...|+..+.++..+
T Consensus 1012 ~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1012 PNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred HHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 455778888999999999988899888887664
No 399
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.95 E-value=10 Score=32.26 Aligned_cols=72 Identities=17% Similarity=0.232 Sum_probs=61.4
Q ss_pred HHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChh---HHHHHHHHHH
Q 023550 44 QASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR---FTNLIKECEE 115 (281)
Q Consensus 44 ~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~---~~~~l~~~~~ 115 (281)
..+++.+...+|+.+++.-++-+|.+......+-..|.-.|+|++|...++-+-++.|++.. +.+.+-+|+.
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea 83 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEA 83 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999998754 3344445544
No 400
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.93 E-value=29 Score=34.08 Aligned_cols=110 Identities=19% Similarity=0.119 Sum_probs=75.1
Q ss_pred hHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCCC--H----HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC----cHH
Q 023550 3 TDLEKKAKEAF-IDDYFELAYDLYSQAIEISPNS--A----ELFADRAQASIKLQNFTEAVADANRAIELEPS----MSK 71 (281)
Q Consensus 3 ~~~~~~g~~~~-~~~~y~~Al~~y~~al~~~p~~--~----~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~----~~~ 71 (281)
...++.|..++ .-.+++.|..++++++.+...+ . .....++.++.+.+... |+..++++++.... ...
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~ 138 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY 138 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH
Confidence 34567788888 6789999999999998875432 2 23445678888887777 99999999986654 233
Q ss_pred HHHHHH--HHHHHhhcHHHHHHHHHHhhhcC--CCChhHHHHHHHH
Q 023550 72 AYWRKA--TACMKLEEYETAKVALEKGASLA--PGDSRFTNLIKEC 113 (281)
Q Consensus 72 a~~~~g--~~~~~~g~~~~A~~~~~~a~~l~--p~~~~~~~~l~~~ 113 (281)
..|++- ..+...+++..|...++.+.... .++..+.....-.
T Consensus 139 ~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~ 184 (608)
T PF10345_consen 139 YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLS 184 (608)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHH
Confidence 333433 22223379999999999988876 4555544443333
No 401
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=85.68 E-value=7 Score=33.58 Aligned_cols=51 Identities=24% Similarity=0.293 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCC------hhHHHHHHHHHHHHHhh
Q 023550 70 SKAYWRKATACMKLEEYETAKVALEKGASLAPGD------SRFTNLIKECEERIAEE 120 (281)
Q Consensus 70 ~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~------~~~~~~l~~~~~~l~~~ 120 (281)
....+.+|.-|+..|+|++|...|+.+......+ ..+...+..|...+++.
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~ 234 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDV 234 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence 4466788999999999999999999986554322 23456666776666554
No 402
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=85.65 E-value=12 Score=35.32 Aligned_cols=89 Identities=15% Similarity=0.072 Sum_probs=52.2
Q ss_pred HHHHHHhcCHHHHHHHHHH--HHhcCCCCHHHHHHHHHHHHHccCHHHHHHH-------HHHHHHcC-----------CC
Q 023550 9 AKEAFIDDYFELAYDLYSQ--AIEISPNSAELFADRAQASIKLQNFTEAVAD-------ANRAIELE-----------PS 68 (281)
Q Consensus 9 g~~~~~~~~y~~Al~~y~~--al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~-------~~~al~l~-----------p~ 68 (281)
-..+..+++|+++++.... .+..-| .......+..+.+.|..+.|++. |+-|++++ -+
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~ 345 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELD 345 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCS
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcC
Confidence 4456667888887666652 221222 33455566666666666666542 33333332 34
Q ss_pred cHHHHHHHHHHHHHhhcHHHHHHHHHHhhhc
Q 023550 69 MSKAYWRKATACMKLEEYETAKVALEKGASL 99 (281)
Q Consensus 69 ~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l 99 (281)
+...|-++|......|+++-|..||+++-..
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~ 376 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKDF 376 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT-H
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc
Confidence 6789999999999999999999999997443
No 403
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=85.63 E-value=21 Score=33.04 Aligned_cols=85 Identities=8% Similarity=0.037 Sum_probs=56.8
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhH--HHHHHHH
Q 023550 40 ADRAQASIKLQNFTEAVADANRAIEL----EPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF--TNLIKEC 113 (281)
Q Consensus 40 ~~~a~~~~~l~~~~~A~~~~~~al~l----~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~--~~~l~~~ 113 (281)
.-+-.+|+..+.|+.|-....++.-- +...+..+|.+|.+..-.++|..|..+|.+|++..|.+..+ .+...++
T Consensus 213 N~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~ 292 (493)
T KOG2581|consen 213 NLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKL 292 (493)
T ss_pred HHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHH
Confidence 33556666777888887766555421 11346788889999999999999999999999999985432 3333333
Q ss_pred HHHHHhhhCcC
Q 023550 114 EERIAEETGEL 124 (281)
Q Consensus 114 ~~~l~~~~~~~ 124 (281)
.--.+-...+.
T Consensus 293 ~ivv~ll~gei 303 (493)
T KOG2581|consen 293 MIVVELLLGEI 303 (493)
T ss_pred HHHHHHHcCCC
Confidence 33333334443
No 404
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.50 E-value=19 Score=29.56 Aligned_cols=94 Identities=11% Similarity=-0.024 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC--H--HHHHHHHHHHHHccCHHHHHHHHHHHH-HcCCCcHHHHHHHHHH
Q 023550 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS--A--ELFADRAQASIKLQNFTEAVADANRAI-ELEPSMSKAYWRKATA 79 (281)
Q Consensus 5 ~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~--~--~~~~~~a~~~~~l~~~~~A~~~~~~al-~l~p~~~~a~~~~g~~ 79 (281)
.++.|-...+.|+-..|+..|+++-...+-- . .+.+.-|.+++..|.|++...-.+-.- .-+|....+.-.+|.+
T Consensus 97 ~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglA 176 (221)
T COG4649 97 RMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLA 176 (221)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHH
Confidence 3445555666667777777776655443221 1 223334445555566666544332211 1223334455668999
Q ss_pred HHHhhcHHHHHHHHHHhhh
Q 023550 80 CMKLEEYETAKVALEKGAS 98 (281)
Q Consensus 80 ~~~~g~~~~A~~~~~~a~~ 98 (281)
-++.|+|.+|..+|.+...
T Consensus 177 a~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 177 AYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHhccchHHHHHHHHHHHc
Confidence 9999999999999998876
No 405
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=85.25 E-value=5.5 Score=36.91 Aligned_cols=80 Identities=15% Similarity=0.094 Sum_probs=60.3
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHcCCC-------------c-----HHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCC
Q 023550 41 DRAQASIKLQNFTEAVADANRAIELEPS-------------M-----SKAYWRKATACMKLEEYETAKVALEKGASLAPG 102 (281)
Q Consensus 41 ~~a~~~~~l~~~~~A~~~~~~al~l~p~-------------~-----~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~ 102 (281)
.-|..+++.++|..|..-|..||++..+ + .-.--.+..||.++++.+.|+....+.+-++|.
T Consensus 181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~ 260 (569)
T PF15015_consen 181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS 260 (569)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc
Confidence 4455666777777777777777766421 1 223456889999999999999999999999998
Q ss_pred ChhHHHHHHHHHHHHHhh
Q 023550 103 DSRFTNLIKECEERIAEE 120 (281)
Q Consensus 103 ~~~~~~~l~~~~~~l~~~ 120 (281)
...-..|.+.|-..|...
T Consensus 261 ~frnHLrqAavfR~LeRy 278 (569)
T PF15015_consen 261 YFRNHLRQAAVFRRLERY 278 (569)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 887777777777777665
No 406
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=85.24 E-value=5.9 Score=37.83 Aligned_cols=47 Identities=13% Similarity=0.226 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 023550 17 YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAI 63 (281)
Q Consensus 17 ~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al 63 (281)
-+++..+.|.+.+...|..+.+|.......+..++|+.....|.+||
T Consensus 34 ~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCL 80 (656)
T KOG1914|consen 34 PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCL 80 (656)
T ss_pred CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555544
No 407
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=85.00 E-value=4.9 Score=39.59 Aligned_cols=48 Identities=15% Similarity=0.075 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHH
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVA 57 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~ 57 (281)
-+++...|..+..+..|++|.++|...-. .-+.+.|++++..|++-..
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~LE~ 843 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGELEV 843 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhHHH
Confidence 35677788888888889999988876322 3456677777777776433
No 408
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=84.86 E-value=3.3 Score=43.21 Aligned_cols=99 Identities=23% Similarity=0.206 Sum_probs=82.0
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASIKLQNFTEAVADANRAIEL-------- 65 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~--------~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l-------- 65 (281)
+..+...+..+.+.+++++|+..-.++.-. .|+....|.+++...+..++...|+..+.++..+
T Consensus 973 ~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~ 1052 (1236)
T KOG1839|consen 973 ASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGED 1052 (1236)
T ss_pred HHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCC
Confidence 556788899999999999999998887655 4555778899999999999999999999988865
Q ss_pred CCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcC
Q 023550 66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASLA 100 (281)
Q Consensus 66 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~ 100 (281)
.|.-......++..+..+++++.|+.+++.|....
T Consensus 1053 hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1053 HPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred CCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 35555566778888889999999999999998753
No 409
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=84.71 E-value=7.4 Score=35.02 Aligned_cols=94 Identities=17% Similarity=0.134 Sum_probs=68.9
Q ss_pred hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhcHHHHHHH
Q 023550 15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE--PSMSKAYWRKATACMKLEEYETAKVA 92 (281)
Q Consensus 15 ~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~--p~~~~a~~~~g~~~~~~g~~~~A~~~ 92 (281)
+-||..-..+|+-.....|. +.+-+|||.+.-+..-.+.++...+...... ..+...+-.+|..+.++|+-.+|...
T Consensus 309 dtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~a 387 (415)
T COG4941 309 DTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAA 387 (415)
T ss_pred CCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHH
Confidence 34666666666666655554 5567888888887777777777766655442 23456777899999999999999999
Q ss_pred HHHhhhcCCCChhHHHH
Q 023550 93 LEKGASLAPGDSRFTNL 109 (281)
Q Consensus 93 ~~~a~~l~p~~~~~~~~ 109 (281)
|.+++.+.++..+-...
T Consensus 388 ydrAi~La~~~aer~~l 404 (415)
T COG4941 388 YDRAIALARNAAERAFL 404 (415)
T ss_pred HHHHHHhcCChHHHHHH
Confidence 99999999876654333
No 410
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=84.71 E-value=4.6 Score=29.96 Aligned_cols=42 Identities=17% Similarity=0.105 Sum_probs=18.2
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023550 42 RAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 42 ~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
.|...+-.|+|..|...+.++-+..+...-.++.-+++-..+
T Consensus 65 ~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~ 106 (108)
T PF07219_consen 65 RGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQ 106 (108)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc
Confidence 333444445555555555554444333333333334443333
No 411
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=84.69 E-value=1.6 Score=30.28 Aligned_cols=29 Identities=28% Similarity=0.260 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~ 31 (281)
..+..+|...-..|+|++|+.+|..+++.
T Consensus 7 i~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 7 HFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 34566677777778888888888887764
No 412
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=84.64 E-value=2.6 Score=22.92 Aligned_cols=29 Identities=34% Similarity=0.466 Sum_probs=18.8
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 023550 16 DYFELAYDLYSQAIEISPNSAELFADRAQ 44 (281)
Q Consensus 16 ~~y~~Al~~y~~al~~~p~~~~~~~~~a~ 44 (281)
|+++.|...|++++...|.+..+|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 35566677777777777766666665544
No 413
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=84.49 E-value=5.7 Score=27.33 Aligned_cols=30 Identities=40% Similarity=0.416 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~ 31 (281)
|..++.+|...-..|+|++|+.+|..+++.
T Consensus 6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 6 AIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456778888888899999999888888765
No 414
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=84.24 E-value=12 Score=29.16 Aligned_cols=31 Identities=19% Similarity=0.103 Sum_probs=13.7
Q ss_pred CCcHHHHHHHHHHHHHhhcHHHHHHHHHHhh
Q 023550 67 PSMSKAYWRKATACMKLEEYETAKVALEKGA 97 (281)
Q Consensus 67 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~ 97 (281)
..++..++.+|.+|.++|+-.+|...+.+|-
T Consensus 117 ~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 117 EINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp -S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 3344444555555555555555554444443
No 415
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=83.75 E-value=6.5 Score=39.58 Aligned_cols=78 Identities=21% Similarity=0.095 Sum_probs=51.1
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHH
Q 023550 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET 88 (281)
Q Consensus 9 g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~ 88 (281)
|..+...|..++|+.+|++.-+. -.+-..|...|.+.+|++.++.-=++. ....||++|.-+...++.+.
T Consensus 807 AvLAieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~~ 876 (1416)
T KOG3617|consen 807 AVLAIELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIEA 876 (1416)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHHH
Confidence 34455666666666666664432 122345566677777766554322222 24578999999999999999
Q ss_pred HHHHHHHh
Q 023550 89 AKVALEKG 96 (281)
Q Consensus 89 A~~~~~~a 96 (281)
|+.+|+++
T Consensus 877 AleyyEK~ 884 (1416)
T KOG3617|consen 877 ALEYYEKA 884 (1416)
T ss_pred HHHHHHhc
Confidence 99999986
No 416
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=83.73 E-value=3.6 Score=28.28 Aligned_cols=29 Identities=38% Similarity=0.401 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~ 31 (281)
..++.+|..+-..|+|++|+.+|..+++.
T Consensus 9 ~~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 9 KELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34556666666677777777777666554
No 417
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.68 E-value=3.7 Score=25.24 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=13.7
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHhh
Q 023550 74 WRKATACMKLEEYETAKVALEKGA 97 (281)
Q Consensus 74 ~~~g~~~~~~g~~~~A~~~~~~a~ 97 (281)
+.+|.+|..+|+++.|...++..+
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHH
Confidence 345555555555555555555555
No 418
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=83.54 E-value=3.6 Score=28.49 Aligned_cols=30 Identities=23% Similarity=0.149 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~ 31 (281)
|..++.+|...-..|+|++|+.+|..+++.
T Consensus 6 Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 6 AIALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 345677788888888888888888888765
No 419
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.30 E-value=16 Score=34.93 Aligned_cols=82 Identities=15% Similarity=0.042 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC---C----CcHHHHHHHHHHHHHhhc-HHHHHHHHHHhhhcCCCChhHHHH
Q 023550 38 LFADRAQASIKLQNFTEAVADANRAIELE---P----SMSKAYWRKATACMKLEE-YETAKVALEKGASLAPGDSRFTNL 109 (281)
Q Consensus 38 ~~~~~a~~~~~l~~~~~A~~~~~~al~l~---p----~~~~a~~~~g~~~~~~g~-~~~A~~~~~~a~~l~p~~~~~~~~ 109 (281)
.+..+|.++..+|+...|..++..+++.. - -.+-++|.+|..|..+|. ..+|..++.+|.....+..---+.
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~lenRL 530 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYELENRL 530 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccchhhHH
Confidence 35679999999999999999999888432 1 137799999999999999 999999999999887554422333
Q ss_pred HHHHHHHHHh
Q 023550 110 IKECEERIAE 119 (281)
Q Consensus 110 l~~~~~~l~~ 119 (281)
.-+++.++..
T Consensus 531 h~rIqAAl~~ 540 (546)
T KOG3783|consen 531 HMRIQAALHT 540 (546)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 420
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=82.89 E-value=33 Score=34.86 Aligned_cols=95 Identities=20% Similarity=0.033 Sum_probs=76.6
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCC--C-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc-----HH
Q 023550 6 EKKAKEAFIDDYFELAYDLYSQAIEISPN--S-------AELFADRAQASIKLQNFTEAVADANRAIELEPSM-----SK 71 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p~--~-------~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~-----~~ 71 (281)
+.+|..+....+|.+|-.+..++-..-+. . +.+...+|.+.+..|++++|+..++.++..=|.+ ..
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~ 498 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV 498 (894)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence 45677788889999999988887665333 1 4666778999999999999999999999876643 55
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhhcC
Q 023550 72 AYWRKATACMKLEEYETAKVALEKGASLA 100 (281)
Q Consensus 72 a~~~~g~~~~~~g~~~~A~~~~~~a~~l~ 100 (281)
++...|.+..-.|++.+|..+...+.+..
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 67778899999999999999998887763
No 421
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=82.42 E-value=7.3 Score=31.93 Aligned_cols=50 Identities=26% Similarity=0.276 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCC
Q 023550 52 FTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG 102 (281)
Q Consensus 52 ~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~ 102 (281)
.+..++.+++.++..| ++..+.+++.++..+|+.++|.....++..+.|.
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4556677778888888 5678899999999999999999999999999994
No 422
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.40 E-value=6.4 Score=32.77 Aligned_cols=47 Identities=23% Similarity=0.276 Sum_probs=40.1
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHccCHHHHHH
Q 023550 11 EAFIDDYFELAYDLYSQAIEISPN----SAELFADRAQASIKLQNFTEAVA 57 (281)
Q Consensus 11 ~~~~~~~y~~Al~~y~~al~~~p~----~~~~~~~~a~~~~~l~~~~~A~~ 57 (281)
.+|...|-++|+.+|.++|++... |++++..+|.+++++|+++.|-=
T Consensus 149 tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 149 TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 355578999999999999998544 48999999999999999998843
No 423
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=82.39 E-value=4.2 Score=27.88 Aligned_cols=29 Identities=31% Similarity=0.446 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~ 31 (281)
..+..+|..+-..|+|++|+.+|..+++.
T Consensus 7 ~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 7 KELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45566777777888888888888877764
No 424
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=82.18 E-value=8.1 Score=26.71 Aligned_cols=30 Identities=23% Similarity=0.453 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~ 31 (281)
|..++.+|...-..|+|++|+.+|..+++.
T Consensus 6 A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 6 AAELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 345667777777888888888888877765
No 425
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.06 E-value=4.3 Score=36.87 Aligned_cols=74 Identities=18% Similarity=0.143 Sum_probs=53.0
Q ss_pred ccCCCeEEEEEEecCCCCcceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCcceEEEeCcEEEEEEeecCC
Q 023550 179 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP 253 (281)
Q Consensus 179 ~Qt~~~v~i~v~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~ 253 (281)
+=++-.=+|+|.++|.+.-.+..++.++ |+|.+++.+-..=..+++|-.+..|+.-+++|.+.++-+++.|+..
T Consensus 64 ~isg~~etV~Vtl~G~ns~~~~~~~~~d-FkV~ADLt~a~~Gt~evkl~ve~l~~~ltvsV~P~~~~Vti~kk~t 137 (403)
T COG4856 64 FISGQPETVTVTLKGPNSIVLKSEKPED-FKVVADLTHAGVGTHEVKLQVEGLPDGLTVSVNPEKATVTIEKKVT 137 (403)
T ss_pred cccCCceEEEEEEeCCcceeeeeecCcC-eEEEEEhhhcCCCceEeeeEeecCCCCceEEEccceeEEEEeeeeE
Confidence 3444445666678886655555555555 7777766533333568889999999999999999999999998764
No 426
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.27 E-value=3.5 Score=25.35 Aligned_cols=26 Identities=27% Similarity=0.225 Sum_probs=21.8
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHc
Q 023550 40 ADRAQASIKLQNFTEAVADANRAIEL 65 (281)
Q Consensus 40 ~~~a~~~~~l~~~~~A~~~~~~al~l 65 (281)
+.+|.+|+.+|+++.|...++.++.-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 56888899999999999988888853
No 427
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=80.81 E-value=10 Score=35.31 Aligned_cols=101 Identities=23% Similarity=0.273 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC--------HHH--HHHHHHHHHHccCHH--------HHHHHHHHHHH--
Q 023550 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS--------AEL--FADRAQASIKLQNFT--------EAVADANRAIE-- 64 (281)
Q Consensus 5 ~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~--------~~~--~~~~a~~~~~l~~~~--------~A~~~~~~al~-- 64 (281)
.++.|..++..|+|.+|+..|+.+|..-|-. .++ ++..+.-|+.-=+.+ ...++.+|.++
T Consensus 207 ~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lELA 286 (422)
T PF06957_consen 207 RLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLELA 286 (422)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHH
Confidence 4668999999999999999999998762211 111 222222222110111 11122233333
Q ss_pred -------cCCCcHHHHHHHH-HHHHHhhcHHHHHHHHHHhhhcCCCChh
Q 023550 65 -------LEPSMSKAYWRKA-TACMKLEEYETAKVALEKGASLAPGDSR 105 (281)
Q Consensus 65 -------l~p~~~~a~~~~g-~~~~~~g~~~~A~~~~~~a~~l~p~~~~ 105 (281)
|.|.+...-++.| ...++.++|..|....++.+++.|....
T Consensus 287 AYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~ 335 (422)
T PF06957_consen 287 AYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEV 335 (422)
T ss_dssp HHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHH
Confidence 3333333333333 4456789999999999999999997653
No 428
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=80.79 E-value=9 Score=26.54 Aligned_cols=22 Identities=9% Similarity=-0.102 Sum_probs=10.0
Q ss_pred HHHHhhhcCCCChhHHHHHHHH
Q 023550 92 ALEKGASLAPGDSRFTNLIKEC 113 (281)
Q Consensus 92 ~~~~a~~l~p~~~~~~~~l~~~ 113 (281)
.+.+++...|+++.-.....++
T Consensus 35 ~L~q~~~~~pD~~~k~~yr~ki 56 (75)
T cd02682 35 VLSQIVKNYPDSPTRLIYEQMI 56 (75)
T ss_pred HHHHHHHhCCChHHHHHHHHHH
Confidence 3334444566655433333333
No 429
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.67 E-value=6.3 Score=34.80 Aligned_cols=57 Identities=19% Similarity=0.116 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 023550 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61 (281)
Q Consensus 5 ~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~ 61 (281)
+...+..|...|.|.+|+.+.++++.++|-+...+..+.+.+..+|+--.|...|++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 345577888999999999999999999999999999999999999997777666654
No 430
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.81 E-value=4.2 Score=36.85 Aligned_cols=53 Identities=19% Similarity=0.230 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHccCHHHH
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISP--------NSAELFADRAQASIKLQNFTEA 55 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p--------~~~~~~~~~a~~~~~l~~~~~A 55 (281)
..+...|+.++.+++|++|...|..|..+.. ++...++..|.+++.+++++.+
T Consensus 42 e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~ 102 (400)
T KOG4563|consen 42 EELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQ 102 (400)
T ss_pred HHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777888888888888888877766521 2234455555555555554443
No 431
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.69 E-value=14 Score=35.19 Aligned_cols=93 Identities=13% Similarity=0.031 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhcHHHHHHHHHHh
Q 023550 19 ELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE--PSMSKAYWRKATACMKLEEYETAKVALEKG 96 (281)
Q Consensus 19 ~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 96 (281)
+.+.+.+.......|.++.+.++.|..+...|+.+.|+..+..++... .-....+|.+|.++..+.+|..|...+...
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 445555555566789999999999999999999888888888887711 113557888999999999999999888887
Q ss_pred hhcCCCChhHHHHHH
Q 023550 97 ASLAPGDSRFTNLIK 111 (281)
Q Consensus 97 ~~l~p~~~~~~~~l~ 111 (281)
.....=...+...+.
T Consensus 330 ~desdWS~a~Y~Yfa 344 (546)
T KOG3783|consen 330 RDESDWSHAFYTYFA 344 (546)
T ss_pred HhhhhhhHHHHHHHH
Confidence 776654444445544
No 432
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=79.46 E-value=14 Score=34.78 Aligned_cols=79 Identities=10% Similarity=0.079 Sum_probs=46.8
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------CCcHHHHHHHHHH
Q 023550 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE--------PSMSKAYWRKATA 79 (281)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~--------p~~~~a~~~~g~~ 79 (281)
+-..+.+.|+.+.|++... .-++...|..+|...+..|+++-|..+|.++-..+ -.+.+.+-.++..
T Consensus 324 rFeLAl~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 324 RFELALQLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHHHCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HhHHHHhcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHH
Confidence 3344444455444444331 34568899999999999999999999888754322 2344455555555
Q ss_pred HHHhhcHHHHHH
Q 023550 80 CMKLEEYETAKV 91 (281)
Q Consensus 80 ~~~~g~~~~A~~ 91 (281)
....|++.-|..
T Consensus 399 a~~~~~~n~af~ 410 (443)
T PF04053_consen 399 AEERGDINIAFQ 410 (443)
T ss_dssp HHHTT-HHHHHH
T ss_pred HHHccCHHHHHH
Confidence 555555554443
No 433
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.93 E-value=9.6 Score=39.31 Aligned_cols=102 Identities=19% Similarity=0.174 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC------------C----
Q 023550 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP------------S---- 68 (281)
Q Consensus 5 ~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p------------~---- 68 (281)
...-|+.+|..+.|+.|--+|+. ..-|..+|..+..+|+|+.|...+++|-...- .
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA 1268 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH
Confidence 45679999999999999999865 45688899999999999999999988754321 0
Q ss_pred ---------cHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHH
Q 023550 69 ---------MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE 114 (281)
Q Consensus 69 ---------~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (281)
.++-+-.+..-|...|-|++-+..++.++-++..+-.....++.++
T Consensus 1269 QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLY 1323 (1666)
T KOG0985|consen 1269 QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILY 1323 (1666)
T ss_pred HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Confidence 1222233444555667777777777777766654444334444433
No 434
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=78.90 E-value=26 Score=34.37 Aligned_cols=90 Identities=8% Similarity=0.024 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-------C-------------------HHHHHHHHHHHHHccCHHHHHHH
Q 023550 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPN-------S-------------------AELFADRAQASIKLQNFTEAVAD 58 (281)
Q Consensus 5 ~~~~g~~~~~~~~y~~Al~~y~~al~~~p~-------~-------------------~~~~~~~a~~~~~l~~~~~A~~~ 58 (281)
++--|...+..+..+.|.+++.++++.-.+ . ...+...+.+..-++++..|...
T Consensus 304 y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~ 383 (608)
T PF10345_consen 304 YFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQE 383 (608)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 344466667777766777777776655111 0 12244566777778999999888
Q ss_pred HHHHHHcC---C------CcHHHHHHHHHHHHHhhcHHHHHHHHH
Q 023550 59 ANRAIELE---P------SMSKAYWRKATACMKLEEYETAKVALE 94 (281)
Q Consensus 59 ~~~al~l~---p------~~~~a~~~~g~~~~~~g~~~~A~~~~~ 94 (281)
...+.... | ..+..+|..|..+...|+.+.|...|.
T Consensus 384 l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 384 LEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 88766543 2 247789999999999999999999998
No 435
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=76.87 E-value=48 Score=30.53 Aligned_cols=56 Identities=14% Similarity=-0.008 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHH--ccCHHHHHHHHH
Q 023550 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPN-----SAELFADRAQASIK--LQNFTEAVADAN 60 (281)
Q Consensus 5 ~~~~g~~~~~~~~y~~Al~~y~~al~~~p~-----~~~~~~~~a~~~~~--l~~~~~A~~~~~ 60 (281)
...++..+|+.++|..|...|..++...+. ....+..++.+|.. .=+|.+|...++
T Consensus 133 e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 133 EQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 345678999999999999999999987532 24455566666554 557888988887
No 436
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=76.28 E-value=26 Score=40.82 Aligned_cols=114 Identities=18% Similarity=0.123 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhc-CHHHHHHHHHHH-Hhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 023550 5 LEKKAKEAFIDD-YFELAYDLYSQA-IEI--SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80 (281)
Q Consensus 5 ~~~~g~~~~~~~-~y~~Al~~y~~a-l~~--~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~ 80 (281)
+.+++.++++.. .+..+++..+.. +.. +...++.+..+|..+.++|++++|-..|..|++++-..+++|+.-|.-+
T Consensus 2777 ~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~ 2856 (3550)
T KOG0889|consen 2777 LREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYL 2856 (3550)
T ss_pred HHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 445555555544 444455444332 111 2223678899999999999999999999999999999999999988777
Q ss_pred HHhh--------cHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHh
Q 023550 81 MKLE--------EYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (281)
Q Consensus 81 ~~~g--------~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (281)
.++- --..|+.||-+|....-+ ...+..++++...+.-
T Consensus 2857 ~~~f~~e~~ni~~a~~avsCyLqA~~~~~~-skaRk~iakvLwLls~ 2902 (3550)
T KOG0889|consen 2857 DNRFNKEPVNISFACNAVSCYLQAARLYNS-SKARKLIAKVLWLLSF 2902 (3550)
T ss_pred HHHHhccCcccHHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHh
Confidence 6541 134677777777776643 3355566665554443
No 437
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.54 E-value=58 Score=33.31 Aligned_cols=104 Identities=18% Similarity=0.131 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-------C---HHHHHHHHHHHHHc------------cCHHHH--HHHH
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPN-------S---AELFADRAQASIKL------------QNFTEA--VADA 59 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~-------~---~~~~~~~a~~~~~l------------~~~~~A--~~~~ 59 (281)
.-.+.|..+...|.+.+|++.|+.+|-.-|- + +.-+...+.-|+-- .+.+.+ +..|
T Consensus 993 ~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaY 1072 (1202)
T KOG0292|consen 993 KKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAY 1072 (1202)
T ss_pred HHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHH
Confidence 3467889999999999999999999876332 1 22233333333221 234444 2233
Q ss_pred HHHHHcCCCcHHHHHHH-HHHHHHhhcHHHHHHHHHHhhhcCCCChhHH
Q 023550 60 NRAIELEPSMSKAYWRK-ATACMKLEEYETAKVALEKGASLAPGDSRFT 107 (281)
Q Consensus 60 ~~al~l~p~~~~a~~~~-g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~ 107 (281)
-.-..+.|-....-++. -..++++++|..|.....+.+++.|..+.+.
T Consensus 1073 Ft~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~ 1121 (1202)
T KOG0292|consen 1073 FTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAE 1121 (1202)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHH
Confidence 33345566554333444 4678899999999999999999999877543
No 438
>PF15469 Sec5: Exocyst complex component Sec5
Probab=74.30 E-value=28 Score=28.28 Aligned_cols=27 Identities=11% Similarity=-0.016 Sum_probs=16.1
Q ss_pred cHHHHHHHHHHhhhcCCCChhHHHHHH
Q 023550 85 EYETAKVALEKGASLAPGDSRFTNLIK 111 (281)
Q Consensus 85 ~~~~A~~~~~~a~~l~p~~~~~~~~l~ 111 (281)
..++...+....+++++.+..+|.|+.
T Consensus 154 s~~~~~~~i~~Ll~L~~~~dPi~~~l~ 180 (182)
T PF15469_consen 154 SQEEFLKLIRKLLELNVEEDPIWYWLE 180 (182)
T ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 345555566666666666665666653
No 439
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=74.24 E-value=8.6 Score=20.67 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHH
Q 023550 52 FTEAVADANRAIELEPSMSKAYWRK 76 (281)
Q Consensus 52 ~~~A~~~~~~al~l~p~~~~a~~~~ 76 (281)
++.|...|++++...|.+...|...
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~y 27 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLKY 27 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHH
Confidence 4444445555555555444444443
No 440
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=74.21 E-value=57 Score=28.66 Aligned_cols=113 Identities=14% Similarity=0.044 Sum_probs=76.0
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCC--CHHHHHHHHHH---HHHccCH----HHHHHHHHHHHHcCCCcHHHHHHHHH
Q 023550 8 KAKEAFIDDYFELAYDLYSQAIEISPN--SAELFADRAQA---SIKLQNF----TEAVADANRAIELEPSMSKAYWRKAT 78 (281)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~al~~~p~--~~~~~~~~a~~---~~~l~~~----~~A~~~~~~al~l~p~~~~a~~~~g~ 78 (281)
....+...++|++--+.|.+.....-+ ..+..+.++.. ++.+... ....+.++.=+...|++.-+++.+|.
T Consensus 6 ~ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~ 85 (277)
T PF13226_consen 6 DIRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGM 85 (277)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHH
Confidence 567888999999998888888755332 11111222211 2222221 13556666777889999899999888
Q ss_pred HHHHhh----------------------cHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 79 ACMKLE----------------------EYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 79 ~~~~~g----------------------~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
.+++.. -.+.|..++.+++.++|....+...+..+...++..
T Consensus 86 ~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP 149 (277)
T PF13226_consen 86 YWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEP 149 (277)
T ss_pred HHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCc
Confidence 887652 256788889999999999887777776666655554
No 441
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=73.83 E-value=12 Score=35.01 Aligned_cols=114 Identities=15% Similarity=0.077 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc------------------------cCHHHHHHHH
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL------------------------QNFTEAVADA 59 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l------------------------~~~~~A~~~~ 59 (281)
..+..|...+..++|.+++..+.++|+..- ...-..+.|.... |.+-+-..+.
T Consensus 33 ~ay~~gl~~y~~~~w~~~v~~le~ALr~~~---~~~~~~~~Cr~~C~g~~~~~e~~~~~~s~~~~~~a~fg~~le~a~Cl 109 (471)
T KOG4459|consen 33 LAYSHGLESYEEENWPEAVRFLERALRLFR---ALRDSEAFCRTNCEGPAQLPEPEAGSASFGGLYLAIFGHLLERAACL 109 (471)
T ss_pred HHHHHHHhhhhhccHHHHHHHHHHHHHHHH---HHhhhHHHHHhhccCcccCCCchhcccccchhHHHHHHHHHHHHHHH
Confidence 457889999999999999999999988621 0111111122111 2222233333
Q ss_pred HHHHHcC---C----------CcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHhh
Q 023550 60 NRAIELE---P----------SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120 (281)
Q Consensus 60 ~~al~l~---p----------~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~~ 120 (281)
.++..-- + .....|.++-.+|++.|++..|+++-...+-.+|++..++..+..-+.+++..
T Consensus 110 ~rCkg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq~~l~~s 183 (471)
T KOG4459|consen 110 RRCKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQTMLGVS 183 (471)
T ss_pred HHHhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHHhccCCC
Confidence 3333211 1 12357788999999999999999999999999999999888888877666554
No 442
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=73.64 E-value=47 Score=33.76 Aligned_cols=90 Identities=16% Similarity=0.036 Sum_probs=68.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC----Cc--HHHHH
Q 023550 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNS-----AELFADRAQASIKLQNFTEAVADANRAIELEP----SM--SKAYW 74 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p~~-----~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p----~~--~~a~~ 74 (281)
--+|......++.++|+.+.+.++.+-|.+ ..++...|.++.-.|++.+|+.....+.++.. .. .-+.+
T Consensus 462 aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~ 541 (894)
T COG2909 462 ALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLL 541 (894)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 346788889999999999999999997765 46677889999999999999999988888743 22 33445
Q ss_pred HHHHHHHHhhc--HHHHHHHHHH
Q 023550 75 RKATACMKLEE--YETAKVALEK 95 (281)
Q Consensus 75 ~~g~~~~~~g~--~~~A~~~~~~ 95 (281)
..+.++...|+ +++....|..
T Consensus 542 ~~s~il~~qGq~~~a~~~~~~~~ 564 (894)
T COG2909 542 QQSEILEAQGQVARAEQEKAFNL 564 (894)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 56788888883 4444444443
No 443
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=73.15 E-value=51 Score=31.81 Aligned_cols=92 Identities=13% Similarity=0.077 Sum_probs=69.5
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCcH-HHHHHHHHHHHHhhcH
Q 023550 10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL--EPSMS-KAYWRKATACMKLEEY 86 (281)
Q Consensus 10 ~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l--~p~~~-~a~~~~g~~~~~~g~~ 86 (281)
..++-.+|+.-|.+.|.-.|+..++++.+-......+..+++-..|...|++++.. .++-. ..|-++-.--..-|+.
T Consensus 409 mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 409 MEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred HHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 45677889999999999999999999988888888889999999999999999876 44433 4444444444556787
Q ss_pred HHHHHHHHHhhhcCC
Q 023550 87 ETAKVALEKGASLAP 101 (281)
Q Consensus 87 ~~A~~~~~~a~~l~p 101 (281)
..++..-++-....|
T Consensus 489 ~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 489 NSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHHHHHhcc
Confidence 777766666555544
No 444
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=73.02 E-value=74 Score=28.91 Aligned_cols=92 Identities=16% Similarity=0.069 Sum_probs=64.7
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC--------------------
Q 023550 8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP-------------------- 67 (281)
Q Consensus 8 ~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p-------------------- 67 (281)
.-..+.+..+..+-|+.-..|++.+|.-+.+|..+|.-- ..-..+|...+++|++...
T Consensus 190 IMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~ 267 (556)
T KOG3807|consen 190 IMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQL 267 (556)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhh
Confidence 345567778888888888999999999888887766432 2235556666666654321
Q ss_pred ---CcHH--HHHHHHHHHHHhhcHHHHHHHHHHhhhcCC
Q 023550 68 ---SMSK--AYWRKATACMKLEEYETAKVALEKGASLAP 101 (281)
Q Consensus 68 ---~~~~--a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p 101 (281)
.+.. .-.+++.|-.++|+..+|.+.|+-..+-.|
T Consensus 268 rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 268 RRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred hcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 1122 335678999999999999999988777666
No 445
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=72.37 E-value=40 Score=31.40 Aligned_cols=96 Identities=18% Similarity=0.042 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHccC--------------HHHHHHHHHHH-
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA------ELFADRAQASIKLQN--------------FTEAVADANRA- 62 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~------~~~~~~a~~~~~l~~--------------~~~A~~~~~~a- 62 (281)
.+...|..+|-.+||+-|+..|..+.+..-++. .++-..|.|++..+. ++.|...|.++
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~ 289 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA 289 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence 356789999999999999999999887644442 223335555555552 23333334332
Q ss_pred ---HHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhc
Q 023550 63 ---IELEPSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (281)
Q Consensus 63 ---l~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l 99 (281)
......-..+.+..+.++..+|.|.+|...+-+....
T Consensus 290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 1111123446666677777888887777766665544
No 446
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=71.89 E-value=73 Score=31.09 Aligned_cols=88 Identities=14% Similarity=0.086 Sum_probs=62.5
Q ss_pred HHHHHHHHH---HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 023550 5 LEKKAKEAF---IDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM 81 (281)
Q Consensus 5 ~~~~g~~~~---~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~ 81 (281)
+...|..+. +.+..+.+....+.-+--........+.+|..+-..+..+.|-.+|++.+..+++ ++++..+.-++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 85 (578)
T PRK15490 8 LAALGKTCLTLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLY 85 (578)
T ss_pred HHHhhhHHHHHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHH
Confidence 344455444 3444555555555544444455667778888888888889999999998888888 57788888888
Q ss_pred HhhcHHHHHHHHH
Q 023550 82 KLEEYETAKVALE 94 (281)
Q Consensus 82 ~~g~~~~A~~~~~ 94 (281)
+.|-..+|...++
T Consensus 86 ~~~~~~~~~~~~~ 98 (578)
T PRK15490 86 NTGLAKDAQLILK 98 (578)
T ss_pred hhhhhhHHHHHHH
Confidence 8888888877766
No 447
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=71.59 E-value=74 Score=30.17 Aligned_cols=101 Identities=14% Similarity=0.084 Sum_probs=69.4
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CcHHHHHHHH-HHHHHhhcHH
Q 023550 10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP-SMSKAYWRKA-TACMKLEEYE 87 (281)
Q Consensus 10 ~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p-~~~~a~~~~g-~~~~~~g~~~ 87 (281)
..++..|++.-|...|.-.+...|+++.+-...-..++..++-+.|...|+.++..-. +..+-.|..- .--..-|+..
T Consensus 440 ~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN 519 (660)
T COG5107 440 IEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLN 519 (660)
T ss_pred HHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchH
Confidence 4566788888888999888888888887777777778888888888888887775332 2233333333 3334457777
Q ss_pred HHHHHHHHhhhcCCCChhHHHHH
Q 023550 88 TAKVALEKGASLAPGDSRFTNLI 110 (281)
Q Consensus 88 ~A~~~~~~a~~l~p~~~~~~~~l 110 (281)
.+...-++..++.|.........
T Consensus 520 ~v~sLe~rf~e~~pQen~~evF~ 542 (660)
T COG5107 520 NVYSLEERFRELVPQENLIEVFT 542 (660)
T ss_pred HHHhHHHHHHHHcCcHhHHHHHH
Confidence 77777777777777654443333
No 448
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=70.56 E-value=18 Score=29.63 Aligned_cols=49 Identities=22% Similarity=0.185 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC
Q 023550 18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP 67 (281)
Q Consensus 18 y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p 67 (281)
.+..++...+.+...| ++..+.+++.++..+|+.++|.+...++..+.|
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4455566677777777 477889999999999999999999999999999
No 449
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=68.28 E-value=82 Score=27.83 Aligned_cols=111 Identities=11% Similarity=0.088 Sum_probs=70.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCC------C----HHH----HHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHH
Q 023550 6 EKKAKEAFIDDYFELAYDLYSQAIEISPN------S----AEL----FADRAQASIKLQNFTEAVADANRAIELEPSMSK 71 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p~------~----~~~----~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~ 71 (281)
-..+..++...||..|++..+++++.--. + .++ -.-=-+++..++++.+++.+.-+-++.-.+.+.
T Consensus 39 e~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPp 118 (309)
T PF07163_consen 39 EEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPP 118 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCH
Confidence 34577788999999999999999875211 1 111 112235677899999999998888876655544
Q ss_pred HHHHHH-HHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHH
Q 023550 72 AYWRKA-TACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117 (281)
Q Consensus 72 a~~~~g-~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l 117 (281)
-...+. ..|.+.|++....+. -.+.-.+|+|........-++-.+
T Consensus 119 kIleLCILLysKv~Ep~amlev-~~~WL~~p~Nq~lp~y~~vaELyL 164 (309)
T PF07163_consen 119 KILELCILLYSKVQEPAAMLEV-ASAWLQDPSNQSLPEYGTVAELYL 164 (309)
T ss_pred HHHHHHHHHHHHhcCHHHHHHH-HHHHHhCcccCCchhhHHHHHHHH
Confidence 445555 455567777655543 344556777766544433333333
No 450
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=67.80 E-value=88 Score=35.50 Aligned_cols=102 Identities=12% Similarity=0.026 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc------------
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM------------ 69 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~------------ 69 (281)
++-|.+.|..+-..|.++.|....-.|.+.. -+.++..+|..+...|+-..|+..++..+.++-.+
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~ 1747 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSV 1747 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhh
Confidence 4567888999999999999999999988876 56789999999999999999999999999765221
Q ss_pred -----HHHHHHHHHHHHHhhcH--HHHHHHHHHhhhcCCCChh
Q 023550 70 -----SKAYWRKATACMKLEEY--ETAKVALEKGASLAPGDSR 105 (281)
Q Consensus 70 -----~~a~~~~g~~~~~~g~~--~~A~~~~~~a~~l~p~~~~ 105 (281)
.++.+..+.-....|++ .+-+..|+.+....|....
T Consensus 1748 n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~ 1790 (2382)
T KOG0890|consen 1748 NLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWED 1790 (2382)
T ss_pred hhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccC
Confidence 22333333333344442 2445677777777775443
No 451
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=67.01 E-value=13 Score=25.81 Aligned_cols=18 Identities=33% Similarity=0.305 Sum_probs=13.6
Q ss_pred HccCHHHHHHHHHHHHHc
Q 023550 48 KLQNFTEAVADANRAIEL 65 (281)
Q Consensus 48 ~l~~~~~A~~~~~~al~l 65 (281)
..|+|++|++.|..+++.
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 457888888888887764
No 452
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.96 E-value=55 Score=26.94 Aligned_cols=77 Identities=10% Similarity=0.038 Sum_probs=56.2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Q 023550 6 EKKAKEAFIDDYFELAYDLYSQAI-EISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al-~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~ 83 (281)
...|..++..|-|++-....+..- ..+|-...+.-.+|.+.++.|+|..|..+|.+... +..-+.....++++...+
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mldl 213 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLDL 213 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHHH
Confidence 445777888899988766665532 22444456667789999999999999999998776 556667777777776654
No 453
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=65.80 E-value=19 Score=32.56 Aligned_cols=93 Identities=14% Similarity=0.039 Sum_probs=70.1
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhc----C--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-----CC--cHHHH
Q 023550 7 KKAKEAFIDDYFELAYDLYSQAIEI----S--PNSAELFADRAQASIKLQNFTEAVADANRAIELE-----PS--MSKAY 73 (281)
Q Consensus 7 ~~g~~~~~~~~y~~Al~~y~~al~~----~--p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~-----p~--~~~a~ 73 (281)
.....|+..++|.+|+.+....++. + +.-.+++..-+.+|+.+.+..+|...+..|-... |. .+..-
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lD 212 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLD 212 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHH
Confidence 3567789999999999998877654 2 2225778888999999999999888777665432 21 23444
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHhhhc
Q 023550 74 WRKATACMKLEEYETAKVALEKGASL 99 (281)
Q Consensus 74 ~~~g~~~~~~g~~~~A~~~~~~a~~l 99 (281)
+.-|+.+..-.+|..|..+|-+|++-
T Consensus 213 LqSGIlha~ekDykTafSYFyEAfEg 238 (411)
T KOG1463|consen 213 LQSGILHAAEKDYKTAFSYFYEAFEG 238 (411)
T ss_pred HhccceeecccccchHHHHHHHHHcc
Confidence 55688888889999999999999874
No 454
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=65.76 E-value=62 Score=25.72 Aligned_cols=97 Identities=21% Similarity=0.150 Sum_probs=68.3
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhc-------CCCC--------------------------------HHHHHHH
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI-------SPNS--------------------------------AELFADR 42 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~-------~p~~--------------------------------~~~~~~~ 42 (281)
|-.....+......|+.++|+..+.++... +|.. .......
T Consensus 2 A~~~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~ 81 (155)
T PF10938_consen 2 AMRDIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKT 81 (155)
T ss_dssp HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHH
Confidence 345567889999999999999999988665 1111 2446778
Q ss_pred HHHHHHccCHHHHHHHHHHHHH-cC------C-CcHHHHHHHHHHHHHhhcHHHHHHHHHHhhh
Q 023550 43 AQASIKLQNFTEAVADANRAIE-LE------P-SMSKAYWRKATACMKLEEYETAKVALEKGAS 98 (281)
Q Consensus 43 a~~~~~l~~~~~A~~~~~~al~-l~------p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~ 98 (281)
++-+++.|+...|.+.++.+-. +. | .........+..+...|+|.+|...+..++.
T Consensus 82 a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 82 ANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 8889999999999887665431 11 1 1244556788999999999999999988763
No 455
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.01 E-value=64 Score=31.37 Aligned_cols=98 Identities=11% Similarity=0.074 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHH-HHHHHHHHccCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHH
Q 023550 5 LEKKAKEAFIDDYFELAYDLYSQAIEISPN-SAELFA-DRAQASIKLQNFTEAVADANRAIELE--PSMSKAYWRKATAC 80 (281)
Q Consensus 5 ~~~~g~~~~~~~~y~~Al~~y~~al~~~p~-~~~~~~-~~a~~~~~l~~~~~A~~~~~~al~l~--p~~~~a~~~~g~~~ 80 (281)
++..-..+-+.|=+..|+++..-.+.++|. |+.+.. .+-...++..+|+=-++.++..-..+ ...+..-|..+.++
T Consensus 345 l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~ 424 (665)
T KOG2422|consen 345 LFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALAR 424 (665)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHH
Confidence 445555667789999999999999999998 654333 33333444556666565555442222 12233346666666
Q ss_pred HHhhc-----HHHHHHHHHHhhhcCCC
Q 023550 81 MKLEE-----YETAKVALEKGASLAPG 102 (281)
Q Consensus 81 ~~~g~-----~~~A~~~~~~a~~l~p~ 102 (281)
+.+.. -+.|..++.+|+.+.|.
T Consensus 425 f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 425 FFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 65543 56788999999999883
No 456
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=63.86 E-value=16 Score=33.30 Aligned_cols=58 Identities=14% Similarity=0.147 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCC--------CcHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 023550 38 LFADRAQASIKLQNFTEAVADANRAIELEP--------SMSKAYWRKATACMKLEEYETAKVALEK 95 (281)
Q Consensus 38 ~~~~~a~~~~~l~~~~~A~~~~~~al~l~p--------~~~~a~~~~g~~~~~~g~~~~A~~~~~~ 95 (281)
=++..|+-++.+++|..|...|..|..+.. .+..++|.+|.+++.+++++.+..++-.
T Consensus 43 ~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~nal 108 (400)
T KOG4563|consen 43 ELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGNAL 108 (400)
T ss_pred HHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 367788889999999999999999987653 4578999999999999999988876654
No 457
>PF12854 PPR_1: PPR repeat
Probab=63.49 E-value=19 Score=20.41 Aligned_cols=26 Identities=12% Similarity=0.014 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHH
Q 023550 36 AELFADRAQASIKLQNFTEAVADANR 61 (281)
Q Consensus 36 ~~~~~~~a~~~~~l~~~~~A~~~~~~ 61 (281)
...|.-+-.+|.+.|+.++|++.+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 34566667777777777777776654
No 458
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=63.21 E-value=44 Score=24.73 Aligned_cols=65 Identities=17% Similarity=0.107 Sum_probs=31.2
Q ss_pred ccCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHh
Q 023550 49 LQNFTEAVADANRAIELEPS-MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119 (281)
Q Consensus 49 l~~~~~A~~~~~~al~l~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~l~~ 119 (281)
.+..++|...++ .+...+. .--+.+-+...+...|+|++|+...+.. + .+++.-|++-|..+++-
T Consensus 18 ~HcHqEA~tIAd-wL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~-~pdlepw~ALce~rlGl 83 (115)
T TIGR02508 18 HHCHQEANTIAD-WLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKL----C-YPDLEPWLALCEWRLGL 83 (115)
T ss_pred chHHHHHHHHHH-HHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCC----C-CchHHHHHHHHHHhhcc
Confidence 344555544332 2333332 2223444556666666666666544332 1 34455555555555543
No 459
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=62.99 E-value=1.5e+02 Score=28.79 Aligned_cols=106 Identities=15% Similarity=0.081 Sum_probs=71.0
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHH---HHHHHHHcC--CC-cHHHHHHHHH-HHH
Q 023550 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVA---DANRAIELE--PS-MSKAYWRKAT-ACM 81 (281)
Q Consensus 9 g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~---~~~~al~l~--p~-~~~a~~~~g~-~~~ 81 (281)
+...-..|++..|..+|++.....|....+-...+....+.|+.+.+.. .+...+.-. +. ....+...+. .+.
T Consensus 373 a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 373 ARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 3344456788999999999888888888888888888888888888874 222222111 11 1333444443 334
Q ss_pred HhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHH
Q 023550 82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECE 114 (281)
Q Consensus 82 ~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 114 (281)
-.++-+.|...+.++....|.+..+...+....
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~ 485 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFE 485 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHH
Confidence 456788888999999999998887665555443
No 460
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=62.91 E-value=19 Score=34.09 Aligned_cols=53 Identities=19% Similarity=0.108 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHH
Q 023550 36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET 88 (281)
Q Consensus 36 ~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~ 88 (281)
.+-...+|.-....|+|.=+.+..++++-.+|.+..+....+.++.++|--.+
T Consensus 452 adrVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE 504 (655)
T COG2015 452 ADRVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAE 504 (655)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhc
Confidence 34556777777888888888888888888888888888888888888886433
No 461
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=62.43 E-value=42 Score=22.15 Aligned_cols=52 Identities=15% Similarity=0.080 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH----HHHHHH--HHHHHHccCHHHHHH
Q 023550 6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSA----ELFADR--AQASIKLQNFTEAVA 57 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~----~~~~~~--a~~~~~l~~~~~A~~ 57 (281)
+..|..+++.|+|=+|-+.+..+....+.+. ..+++. |..+.+.|+...|..
T Consensus 3 ~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~ 60 (62)
T PF03745_consen 3 LEEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARR 60 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHH
T ss_pred HHHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 5678889999999999999999887655442 222333 333445566666654
No 462
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=61.84 E-value=1.3e+02 Score=27.36 Aligned_cols=97 Identities=14% Similarity=0.058 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-----C-HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcH---HHH
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPN-----S-AELFADRAQASIKLQNFTEAVADANRAIELEPSMS---KAY 73 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~-----~-~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~---~a~ 73 (281)
+++..+|.-+.+.||-+.|++.+++..+..-. + .-...++|..|....-..+-++-++..++.+.+.- ..-
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 34556666666666666666666655443111 1 12233455555444444455555555555443321 111
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHhhhc
Q 023550 74 WRKATACMKLEEYETAKVALEKGASL 99 (281)
Q Consensus 74 ~~~g~~~~~~g~~~~A~~~~~~a~~l 99 (281)
-..|.-+....+|.+|...|..++.-
T Consensus 185 vY~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 185 VYQGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHccc
Confidence 22344555556666666666555443
No 463
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=61.30 E-value=53 Score=29.81 Aligned_cols=71 Identities=17% Similarity=0.099 Sum_probs=50.2
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 023550 9 AKEAFIDDYFELAYDLYSQAIEI--SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA 79 (281)
Q Consensus 9 g~~~~~~~~y~~Al~~y~~al~~--~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~ 79 (281)
+...-...-.+.++......... -.....++..||..+.++|+.++|...|++++.+.++..+..+.+...
T Consensus 336 AVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~ 408 (415)
T COG4941 336 AVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRL 408 (415)
T ss_pred HHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 33333333445566666555543 223345677899999999999999999999999999888776665543
No 464
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.20 E-value=1.3e+02 Score=31.55 Aligned_cols=55 Identities=11% Similarity=0.096 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAI 63 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al 63 (281)
-|-+.|.+..+.+...+|++-|-+ .+++..|...-.+..+.|+|++-+.++..|-
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyik-----adDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIK-----ADDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHh-----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 466678888888888888888855 3566677777777777777777766665544
No 465
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=60.98 E-value=50 Score=25.37 Aligned_cols=59 Identities=15% Similarity=-0.039 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---------------AELFADRAQASIKLQNFTEAVADANRA 62 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~---------------~~~~~~~a~~~~~l~~~~~A~~~~~~a 62 (281)
.+-..|+.+++.+++-.++-+|.+|+....+- ..-.-++|..+..+|+-+-.+.+++-|
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlA 76 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLA 76 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHH
Confidence 45567999999999999999999998763221 112345677777777777777766543
No 466
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=60.62 E-value=15 Score=25.71 Aligned_cols=16 Identities=25% Similarity=0.588 Sum_probs=9.0
Q ss_pred CHHHHHHHHHHHHhcC
Q 023550 17 YFELAYDLYSQAIEIS 32 (281)
Q Consensus 17 ~y~~Al~~y~~al~~~ 32 (281)
.|+.|.+..+++|..+
T Consensus 4 ~~~~A~~~I~kaL~~d 19 (79)
T cd02679 4 YYKQAFEEISKALRAD 19 (79)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 4555666666655544
No 467
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=60.23 E-value=51 Score=22.79 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=8.8
Q ss_pred HHHHHHHHccCHHHHHHHHHHH
Q 023550 41 DRAQASIKLQNFTEAVADANRA 62 (281)
Q Consensus 41 ~~a~~~~~l~~~~~A~~~~~~a 62 (281)
.+|.-+-..|+|++|+.+|..+
T Consensus 11 ~~Ave~D~~g~y~eAl~~Y~~a 32 (77)
T cd02683 11 KRAVELDQEGRFQEALVCYQEG 32 (77)
T ss_pred HHHHHHHHhccHHHHHHHHHHH
Confidence 3333333344444444443333
No 468
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=59.81 E-value=25 Score=19.92 Aligned_cols=29 Identities=24% Similarity=0.178 Sum_probs=15.8
Q ss_pred HHHHHHH--HHHHHhh-----cHHHHHHHHHHhhhc
Q 023550 71 KAYWRKA--TACMKLE-----EYETAKVALEKGASL 99 (281)
Q Consensus 71 ~a~~~~g--~~~~~~g-----~~~~A~~~~~~a~~l 99 (281)
.+.+.+| .+|..-. ++++|..+|+++.+.
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 4556666 3333322 466677777666543
No 469
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=58.97 E-value=43 Score=30.02 Aligned_cols=28 Identities=39% Similarity=0.436 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 023550 4 DLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (281)
Q Consensus 4 ~~~~~g~~~~~~~~y~~Al~~y~~al~~ 31 (281)
.+..+|...-+.++|++|+.+|..+++.
T Consensus 12 ~lv~kA~~eD~a~nY~eA~~lY~~aleY 39 (439)
T KOG0739|consen 12 DLVKKAIDEDNAKNYEEALRLYQNALEY 39 (439)
T ss_pred HHHHHHhhhcchhchHHHHHHHHHHHHH
Confidence 3445555556678888888888887764
No 470
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=57.99 E-value=53 Score=32.80 Aligned_cols=80 Identities=16% Similarity=0.096 Sum_probs=39.8
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHhhcH
Q 023550 9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP--SMSKAYWRKATACMKLEEY 86 (281)
Q Consensus 9 g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p--~~~~a~~~~g~~~~~~g~~ 86 (281)
|...---|+|++|.++|-.+ +..+.. -..+.++|+|-...+.++..-.-+. ..-.++..+|..++.+..|
T Consensus 741 aei~~~~g~feeaek~yld~---drrDLA-----ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~W 812 (1189)
T KOG2041|consen 741 AEISAFYGEFEEAEKLYLDA---DRRDLA-----IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEW 812 (1189)
T ss_pred HhHhhhhcchhHhhhhhhcc---chhhhh-----HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 33333346777777776332 222211 1233455555555443332211111 1134666677777777777
Q ss_pred HHHHHHHHHh
Q 023550 87 ETAKVALEKG 96 (281)
Q Consensus 87 ~~A~~~~~~a 96 (281)
++|.++|.++
T Consensus 813 e~A~~yY~~~ 822 (1189)
T KOG2041|consen 813 EEAAKYYSYC 822 (1189)
T ss_pred HHHHHHHHhc
Confidence 7777766554
No 471
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=57.78 E-value=78 Score=23.70 Aligned_cols=77 Identities=13% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHHHHHHHH
Q 023550 37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116 (281)
Q Consensus 37 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 116 (281)
..+..+|.+-...+..++|...++-.-..+...--+..-+...+...|+|++| -.+......+++.-|+.-|..+
T Consensus 7 ~lLAElAL~atG~HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~A-----Ll~~~~~~~pdL~p~~AL~a~k 81 (116)
T PF09477_consen 7 RLLAELALMATGHHCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEA-----LLLPQCHCYPDLEPWAALCAWK 81 (116)
T ss_dssp HHHHHHHHHHHTTT-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHH-----HHHHTTS--GGGHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHH-----HHhcccCCCccHHHHHHHHHHh
Q ss_pred HH
Q 023550 117 IA 118 (281)
Q Consensus 117 l~ 118 (281)
++
T Consensus 82 lG 83 (116)
T PF09477_consen 82 LG 83 (116)
T ss_dssp CT
T ss_pred hc
No 472
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=57.54 E-value=21 Score=18.88 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=9.5
Q ss_pred HHHHHHHccCHHHHHHHHHHH
Q 023550 42 RAQASIKLQNFTEAVADANRA 62 (281)
Q Consensus 42 ~a~~~~~l~~~~~A~~~~~~a 62 (281)
+-.+|.+.|++++|.+.+++.
T Consensus 6 li~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 6 LISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred HHHHHHccchHHHHHHHHHHH
Confidence 334444444444444444443
No 473
>PF13041 PPR_2: PPR repeat family
Probab=57.39 E-value=32 Score=21.04 Aligned_cols=30 Identities=13% Similarity=0.032 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Q 023550 37 ELFADRAQASIKLQNFTEAVADANRAIELE 66 (281)
Q Consensus 37 ~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 66 (281)
..|..+-..|.+.|++++|++.+++..+.+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 345555666667777777777777666544
No 474
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=57.25 E-value=21 Score=27.22 Aligned_cols=28 Identities=14% Similarity=0.355 Sum_probs=14.4
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 023550 7 KKAKEAFIDDYFELAYDLYSQAIEISPN 34 (281)
Q Consensus 7 ~~g~~~~~~~~y~~Al~~y~~al~~~p~ 34 (281)
..|..+...|++++|+.+|-.|+...|+
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 3455555555555555555555555444
No 475
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=56.87 E-value=45 Score=26.51 Aligned_cols=62 Identities=18% Similarity=0.098 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 023550 3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI-SPN-------SAELFADRAQASIKLQNFTEAVADANRAIE 64 (281)
Q Consensus 3 ~~~~~~g~~~~~~~~y~~Al~~y~~al~~-~p~-------~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 64 (281)
......++.+++.|+.+.|.+.+.-+-.. +-. .......+|..++..|+|.+|...+..++.
T Consensus 76 ~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 76 KAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 35678899999999999999998775322 100 134567899999999999999999988874
No 476
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=56.72 E-value=59 Score=30.79 Aligned_cols=77 Identities=8% Similarity=0.043 Sum_probs=61.9
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcC
Q 023550 24 LYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLA 100 (281)
Q Consensus 24 ~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~ 100 (281)
.++.-++.+|++..-|+.+-.-+...+.+++-.+.|.+...-.|-...+|...-..-...++|..-...|.+|+.-.
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 56667888999999999999999999999999999999988888777777666555556677777777777776543
No 477
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=56.46 E-value=64 Score=23.74 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhhc
Q 023550 72 AYWRKATACMKLEEYETAKVALEKGASL 99 (281)
Q Consensus 72 a~~~~g~~~~~~g~~~~A~~~~~~a~~l 99 (281)
..+..|..-+..|+|..|.+.+.++.+.
T Consensus 61 ~al~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 61 RALSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4455566666666666666666666544
No 478
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=55.56 E-value=31 Score=23.03 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=11.8
Q ss_pred HHHHHHHHccCHHHHHHHHHHHH
Q 023550 41 DRAQASIKLQNFTEAVADANRAI 63 (281)
Q Consensus 41 ~~a~~~~~l~~~~~A~~~~~~al 63 (281)
.+|.-+-..|+|++|+..|..++
T Consensus 10 ~~Av~~D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 10 KKAVEADEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 33333444556666665555554
No 479
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=55.50 E-value=1.4e+02 Score=25.87 Aligned_cols=91 Identities=18% Similarity=0.004 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHccCHH-HHHHHHHHHHHcC------CCcHHH
Q 023550 5 LEKKAKEAFIDDYFELAYDLYSQAIEI-----SPNSAELFADRAQASIKLQNFT-EAVADANRAIELE------PSMSKA 72 (281)
Q Consensus 5 ~~~~g~~~~~~~~y~~Al~~y~~al~~-----~p~~~~~~~~~a~~~~~l~~~~-~A~~~~~~al~l~------p~~~~a 72 (281)
++.-+..+++.|++.-|.++..-.++. .+.+.....+++.++...+.-+ +-....+++++-. -.++..
T Consensus 13 L~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~L 92 (260)
T PF04190_consen 13 LYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPEL 92 (260)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHH
T ss_pred HHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHH
Confidence 445566667777777776655444433 2334444556666666654322 2333344444322 246889
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHH
Q 023550 73 YWRKATACMKLEEYETAKVALEK 95 (281)
Q Consensus 73 ~~~~g~~~~~~g~~~~A~~~~~~ 95 (281)
|..+|..|.+.|+|.+|..+|-.
T Consensus 93 H~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 93 HHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHHHHhhccHHHHHHHHHh
Confidence 99999999999999999987754
No 480
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=54.91 E-value=49 Score=29.42 Aligned_cols=94 Identities=13% Similarity=0.047 Sum_probs=69.9
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc-----CCCc--HHHH
Q 023550 7 KKAKEAFIDDYFELAYDLYSQAIEI------SPNSAELFADRAQASIKLQNFTEAVADANRAIEL-----EPSM--SKAY 73 (281)
Q Consensus 7 ~~g~~~~~~~~y~~Al~~y~~al~~------~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l-----~p~~--~~a~ 73 (281)
.....+++.|.|.+|+.+.+..+.. .++-.+.+..-+.+|....+..++...+..|-.+ .|.. +..-
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lD 209 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLD 209 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHH
Confidence 3566789999999999998877654 3444678888999999999988887766655443 2433 3334
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHhhhcC
Q 023550 74 WRKATACMKLEEYETAKVALEKGASLA 100 (281)
Q Consensus 74 ~~~g~~~~~~g~~~~A~~~~~~a~~l~ 100 (281)
+.-|+.+..-.+|..|-.+|-++++-.
T Consensus 210 L~sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 210 LLSGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred HhccceeeccccchhHHHHHHHHHhcc
Confidence 445777778889999999999888753
No 481
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=54.62 E-value=34 Score=26.05 Aligned_cols=38 Identities=11% Similarity=0.176 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHhhhcCCCChhHHHHH
Q 023550 73 YWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLI 110 (281)
Q Consensus 73 ~~~~g~~~~~~g~~~~A~~~~~~a~~l~p~~~~~~~~l 110 (281)
...+|..+...|++++|..+|-+|+...|+-..+...+
T Consensus 66 qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~ 103 (121)
T PF02064_consen 66 QVQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIY 103 (121)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 34589999999999999999999999999766544443
No 482
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=54.57 E-value=1.4e+02 Score=26.60 Aligned_cols=115 Identities=13% Similarity=0.048 Sum_probs=69.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHccCHHH----------HHHHHHH------
Q 023550 6 EKKAKEAFIDDYFELAYDLYSQAIEISPN--------SAELFADRAQASIKLQNFTE----------AVADANR------ 61 (281)
Q Consensus 6 ~~~g~~~~~~~~y~~Al~~y~~al~~~p~--------~~~~~~~~a~~~~~l~~~~~----------A~~~~~~------ 61 (281)
...|+.+.+.+++++|+..|.+.+...-. .......++..|...|++.. +..++.+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 56789999999999999999999876211 13456778888888876543 2222221
Q ss_pred ---HHHcCC---Cc------------------------HHHHHHHHHHHHHhhcHHHHHHHHHHhhh----cC--CCChh
Q 023550 62 ---AIELEP---SM------------------------SKAYWRKATACMKLEEYETAKVALEKGAS----LA--PGDSR 105 (281)
Q Consensus 62 ---al~l~p---~~------------------------~~a~~~~g~~~~~~g~~~~A~~~~~~a~~----l~--p~~~~ 105 (281)
.++.-| ++ ...-..+..++++.|+|.+|+....-.+. .+ ++-..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 112222 11 11223467788899999999876654432 22 22223
Q ss_pred HHHHHHHHHHHHHhh
Q 023550 106 FTNLIKECEERIAEE 120 (281)
Q Consensus 106 ~~~~l~~~~~~l~~~ 120 (281)
+...-.++.-.+++.
T Consensus 167 vhllESKvyh~irnv 181 (421)
T COG5159 167 VHLLESKVYHEIRNV 181 (421)
T ss_pred hhhhhHHHHHHHHhh
Confidence 455555555555554
No 483
>PRK11619 lytic murein transglycosylase; Provisional
Probab=54.37 E-value=1.1e+02 Score=30.42 Aligned_cols=61 Identities=10% Similarity=-0.018 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhh
Q 023550 38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGAS 98 (281)
Q Consensus 38 ~~~~~a~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~ 98 (281)
..-.+....+..++++.+...+...-.........+|-+|.++..+|+.++|...|+++..
T Consensus 314 ~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 314 LLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3344445556778888777776664433345678899999999999999999999999743
No 484
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=54.03 E-value=55 Score=22.21 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=7.7
Q ss_pred HccCHHHHHHHHHHHH
Q 023550 48 KLQNFTEAVADANRAI 63 (281)
Q Consensus 48 ~l~~~~~A~~~~~~al 63 (281)
..|++++|+..|..++
T Consensus 20 ~~g~~~eAl~~Y~~a~ 35 (77)
T smart00745 20 EAGDYEEALELYKKAI 35 (77)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 3455555555444444
No 485
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=53.30 E-value=1.1e+02 Score=24.04 Aligned_cols=63 Identities=19% Similarity=0.123 Sum_probs=41.0
Q ss_pred HHHHHHHHHHH-hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Q 023550 4 DLEKKAKEAFI-DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE 66 (281)
Q Consensus 4 ~~~~~g~~~~~-~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~ 66 (281)
.+.+.|..+.. +|.-+.--+.+...++-+..++.+++.+|.+|-++|+..+|-+.+.+|.+.+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 45666666554 4444444455666555556678999999999999999999999999888765
No 486
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=53.12 E-value=98 Score=23.44 Aligned_cols=80 Identities=14% Similarity=0.095 Sum_probs=50.6
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH---------HHHcCCCcHHHHHHHHHHHHHh
Q 023550 13 FIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR---------AIELEPSMSKAYWRKATACMKL 83 (281)
Q Consensus 13 ~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~---------al~l~p~~~~a~~~~g~~~~~~ 83 (281)
...+.+...+.++...+..++.+..++..+..+|.+.+ -.+.++.+.. ++++.... ..|-....+|.+.
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~~~~~yd~~~~~~~c~~~-~l~~~~~~l~~k~ 95 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDNKSNHYDIEKVGKLCEKA-KLYEEAVELYKKD 95 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHhccccCCHHHHHHHHHHc-CcHHHHHHHHHhh
Confidence 34578899999999999998888888888888887653 3444444442 22222111 1233445566666
Q ss_pred hcHHHHHHHHH
Q 023550 84 EEYETAKVALE 94 (281)
Q Consensus 84 g~~~~A~~~~~ 94 (281)
|++.+|+..+-
T Consensus 96 ~~~~~Al~~~l 106 (140)
T smart00299 96 GNFKDAIVTLI 106 (140)
T ss_pred cCHHHHHHHHH
Confidence 77777766543
No 487
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.95 E-value=34 Score=33.37 Aligned_cols=51 Identities=18% Similarity=0.169 Sum_probs=37.9
Q ss_pred HHHHHccCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHHhhhc
Q 023550 44 QASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASL 99 (281)
Q Consensus 44 ~~~~~l~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l 99 (281)
.+.+++|+++.|.+.+. ..++..-|-.+|.+....+++..|.+||.++..+
T Consensus 645 elal~lgrl~iA~~la~-----e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAV-----EANSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhhhhcCcHHHHHHHHH-----hhcchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 34456677776655332 2356677889999999999999999999998665
No 488
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=52.00 E-value=1.3e+02 Score=27.23 Aligned_cols=46 Identities=15% Similarity=0.017 Sum_probs=38.7
Q ss_pred cCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 023550 50 QNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEK 95 (281)
Q Consensus 50 ~~~~~A~~~~~~al~l~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~ 95 (281)
...-+|+-.++.++..+|.+....+.+..+|..+|-...|...|..
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4567788888888889999999999999999999998888887754
No 489
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=51.90 E-value=37 Score=18.19 Aligned_cols=22 Identities=14% Similarity=0.022 Sum_probs=11.3
Q ss_pred HHHHHHHccCHHHHHHHHHHHH
Q 023550 42 RAQASIKLQNFTEAVADANRAI 63 (281)
Q Consensus 42 ~a~~~~~l~~~~~A~~~~~~al 63 (281)
+-.+|.+.|++++|++.+.+..
T Consensus 6 li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 6 LIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 3344555555555555555443
No 490
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=51.39 E-value=54 Score=29.55 Aligned_cols=63 Identities=25% Similarity=0.191 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHH--HHhcCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQ--AIEISP--NSAELFADRAQASIKLQNFTEAVADANRAIE 64 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~--al~~~p--~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~ 64 (281)
.+.++..|...|.-|+|..|-.++-. ++..++ +...++...-..-+.+.+|+-|++++.+.-+
T Consensus 129 i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre 195 (432)
T KOG2758|consen 129 IETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLRE 195 (432)
T ss_pred HHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 35677778888888888888776433 333222 2344444444555667788888887776543
No 491
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=51.24 E-value=66 Score=21.76 Aligned_cols=14 Identities=29% Similarity=0.377 Sum_probs=6.6
Q ss_pred cCHHHHHHHHHHHH
Q 023550 50 QNFTEAVADANRAI 63 (281)
Q Consensus 50 ~~~~~A~~~~~~al 63 (281)
|+|++|+..|..++
T Consensus 20 g~~~~Al~~Y~~a~ 33 (75)
T cd02656 20 GNYEEALELYKEAL 33 (75)
T ss_pred CCHHHHHHHHHHHH
Confidence 45555444444443
No 492
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.27 E-value=58 Score=29.60 Aligned_cols=81 Identities=12% Similarity=0.202 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCCCCHH-H--HHHHHHHHHHccCHHHHHHHHHHH---HHcC---------------------------C
Q 023550 21 AYDLYSQAIEISPNSAE-L--FADRAQASIKLQNFTEAVADANRA---IELE---------------------------P 67 (281)
Q Consensus 21 Al~~y~~al~~~p~~~~-~--~~~~a~~~~~l~~~~~A~~~~~~a---l~l~---------------------------p 67 (281)
+-..|+++++.-|+... + -++-|..+...++|.+....++.+ ++.+ |
T Consensus 40 ~~~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g 119 (449)
T COG3014 40 PKKAYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGG 119 (449)
T ss_pred chhHHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCc
Confidence 34445555555554422 2 235677777777777765544432 2211 1
Q ss_pred Cc---HHHHHHHHHHHHHhhcHHHHHHHHHHhhhcCC
Q 023550 68 SM---SKAYWRKATACMKLEEYETAKVALEKGASLAP 101 (281)
Q Consensus 68 ~~---~~a~~~~g~~~~~~g~~~~A~~~~~~a~~l~p 101 (281)
.+ .-.++.+|.-|....+++.|+-.|.++.....
T Consensus 120 ~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~ 156 (449)
T COG3014 120 NIYEGVLINYYKALNYMLLNDSAKARVEFNRANERQR 156 (449)
T ss_pred hhHHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHHHH
Confidence 11 34678899999999999999999999876653
No 493
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=50.10 E-value=32 Score=23.84 Aligned_cols=22 Identities=18% Similarity=0.113 Sum_probs=9.7
Q ss_pred HHHHHHHHhhcHHHHHHHHHHh
Q 023550 75 RKATACMKLEEYETAKVALEKG 96 (281)
Q Consensus 75 ~~g~~~~~~g~~~~A~~~~~~a 96 (281)
.+|+-+-..|+|++|+.+|..+
T Consensus 11 ~~Ave~D~~g~y~eA~~~Y~~a 32 (76)
T cd02681 11 RLAVQRDQEGRYSEAVFYYKEA 32 (76)
T ss_pred HHHHHHHHccCHHHHHHHHHHH
Confidence 3333344444444444444444
No 494
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=49.87 E-value=1.1e+02 Score=26.98 Aligned_cols=68 Identities=19% Similarity=0.111 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----------------------cCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 023550 20 LAYDLYSQAIEISPNSAELFADRAQASIKL----------------------QNFTEAVADANRAIELEPSMSKAYWRKA 77 (281)
Q Consensus 20 ~Al~~y~~al~~~p~~~~~~~~~a~~~~~l----------------------~~~~~A~~~~~~al~l~p~~~~a~~~~g 77 (281)
.-+..++.-++..|++..+++.+|.++... .-.+.|..++.+|+.++|....++..+-
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~ 140 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMI 140 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 456667777888999998888888887765 2256688889999999999999988888
Q ss_pred HHHHHhhcHH
Q 023550 78 TACMKLEEYE 87 (281)
Q Consensus 78 ~~~~~~g~~~ 87 (281)
.+-..+|+.+
T Consensus 141 ~~s~~fgeP~ 150 (277)
T PF13226_consen 141 NISAYFGEPD 150 (277)
T ss_pred HHHhhcCCch
Confidence 8888887753
No 495
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=49.63 E-value=31 Score=25.78 Aligned_cols=30 Identities=30% Similarity=0.324 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI 31 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~ 31 (281)
|..++.+|..++..||.+.|.-+|.+.+.+
T Consensus 38 a~~l~~~A~~~~~egd~E~AYvl~~R~~~L 67 (115)
T PF08969_consen 38 ANKLLREAEEYRQEGDEEQAYVLYMRYLTL 67 (115)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 456788888888888888888888887765
No 496
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=48.97 E-value=1.2e+02 Score=29.69 Aligned_cols=57 Identities=21% Similarity=0.068 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 023550 2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60 (281)
Q Consensus 2 a~~~~~~g~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~ 60 (281)
+.+++.++..+-.-+..+.|-.+|++.+.++++ ..++..|.-+.+.|-...|...+.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 42 SLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 346778888899999999999999999999998 567788888888887777766555
No 497
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.96 E-value=59 Score=28.67 Aligned_cols=50 Identities=12% Similarity=0.264 Sum_probs=40.2
Q ss_pred hcCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 023550 15 DDYFELAYDLYSQAIEISPNSA----ELFADRAQASIKLQNFTEAVADANRAIE 64 (281)
Q Consensus 15 ~~~y~~Al~~y~~al~~~p~~~----~~~~~~a~~~~~l~~~~~A~~~~~~al~ 64 (281)
..+.++|+.-|.+.+++.+.-. .++-+.-..++++++|.+-+..|.+.+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 4578999999999999987763 4566677888899999998888877663
No 498
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=48.89 E-value=5.7 Score=38.36 Aligned_cols=97 Identities=20% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHh--cCC-CCHHHHHHHHHHHHHccCHHHHHHHHHH--HHHcCCC-cHHHHHHHHH
Q 023550 5 LEKKAKEAFIDDYFELAYDLYSQAIE--ISP-NSAELFADRAQASIKLQNFTEAVADANR--AIELEPS-MSKAYWRKAT 78 (281)
Q Consensus 5 ~~~~g~~~~~~~~y~~Al~~y~~al~--~~p-~~~~~~~~~a~~~~~l~~~~~A~~~~~~--al~l~p~-~~~a~~~~g~ 78 (281)
++..+..++..|++..|...+.+.-. +++ ....+.+..|.+....|+++.|+..+.. ...+.+. ....+..++.
T Consensus 27 ~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~A~ 106 (536)
T PF04348_consen 27 LLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLRAQ 106 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHHHH
Confidence 45567888999999999999988652 222 2356777889999999999999998874 1122222 2445566789
Q ss_pred HHHHhhcHHHHHHHHHHhhhcCC
Q 023550 79 ACMKLEEYETAKVALEKGASLAP 101 (281)
Q Consensus 79 ~~~~~g~~~~A~~~~~~a~~l~p 101 (281)
++...|++-+|...+-..-.+-+
T Consensus 107 a~~~~~~~l~Aa~~~i~l~~lL~ 129 (536)
T PF04348_consen 107 AYEQQGDPLAAARERIALDPLLP 129 (536)
T ss_dssp -----------------------
T ss_pred HHHhcCCHHHHHHHHHHHhhhcC
Confidence 99999999888887666555443
No 499
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.77 E-value=99 Score=30.38 Aligned_cols=82 Identities=18% Similarity=0.119 Sum_probs=53.9
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC--------CcHHHHHHH-----
Q 023550 10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP--------SMSKAYWRK----- 76 (281)
Q Consensus 10 ~~~~~~~~y~~Al~~y~~al~~~p~~~~~~~~~a~~~~~l~~~~~A~~~~~~al~l~p--------~~~~a~~~~----- 76 (281)
..+.+.|+++.|..+..+ .++..-|..+|.+.+..+++..|.+++.++-.+.. .+...+-.+
T Consensus 645 elal~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~ 719 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAK 719 (794)
T ss_pred hhhhhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHH
Confidence 344555555555544433 34566788999999999999999999988775432 233322222
Q ss_pred --------HHHHHHhhcHHHHHHHHHHh
Q 023550 77 --------ATACMKLEEYETAKVALEKG 96 (281)
Q Consensus 77 --------g~~~~~~g~~~~A~~~~~~a 96 (281)
-.+|+.+|++++++..+..-
T Consensus 720 ~~g~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 720 KQGKNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hhcccchHHHHHHHcCCHHHHHHHHHhc
Confidence 25677778888887777654
No 500
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=48.43 E-value=38 Score=18.64 Aligned_cols=13 Identities=31% Similarity=0.256 Sum_probs=6.5
Q ss_pred cHHHHHHHHHHhh
Q 023550 85 EYETAKVALEKGA 97 (281)
Q Consensus 85 ~~~~A~~~~~~a~ 97 (281)
+..+|..+|+++-
T Consensus 20 d~~~A~~~~~~Aa 32 (36)
T smart00671 20 DLEKALEYYKKAA 32 (36)
T ss_pred CHHHHHHHHHHHH
Confidence 4555555555443
Done!