Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>023552
MGKRGRDRRASNLTSVSHKPISLRDEKAGKKLVNTTNVKSKLELEHLQRLAVWASSETSV
PSLAALFGHRLASANEVLGLQPDPSFFSCQRCETVLQPGFNCTIRIEKNQVKSRRRWKKP
KTSMQNTVVYKCHFCSHHNLKRGTPVGHMKEICPMKAKPSSRPQCGSKSPLKRSANTTKD
TRSKDEVSKVDDEALPSISKNCVETPPLKSRITLEGKKRRRKSGNKNSAESESNSAVTDD
KTVGVSSRRRRTSWTSLKEIAERSEDDNGRMANLTIPFSL

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  023552
        (280 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2155120 - symbol:AT5G41270 "AT5G41270" species...   382  2.4e-35   1


>TAIR|locus:2155120 [details] [associations]
            symbol:AT5G41270 "AT5G41270" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002688 GenomeReviews:BA000015_GR
            InterPro:IPR007175 Pfam:PF04032 EMBL:BT004814 EMBL:AK227897
            IPI:IPI00518240 RefSeq:NP_198943.3 UniGene:At.30242
            ProteinModelPortal:Q84VV1 EnsemblPlants:AT5G41270.1 GeneID:834128
            KEGG:ath:AT5G41270 TAIR:At5g41270 eggNOG:NOG302440
            HOGENOM:HOG000147084 InParanoid:Q84VV1 OMA:SCQRCET PhylomeDB:Q84VV1
            ProtClustDB:CLSN2918642 Genevestigator:Q84VV1 Uniprot:Q84VV1
        Length = 258

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 104/269 (38%), Positives = 137/269 (50%)

Query:    27 KAG-KKLVNTT-----NVKSKLELEHLQRLAVWASS-ETSVPSLAALFGHRLASANEVLG 79
             K G KKL NT      N+KS L  EHL+ LA+W+S+ +T +PSLA+L G RLA+  E  G
Sbjct:     3 KRGPKKLTNTQGGGGPNLKSVLRHEHLKNLALWSSTGDTPIPSLASLLGRRLAADTESTG 62

Query:    80 LQPDPSFFSCQRCETVLQPGFNCTIRIEK---NQVKSRRRWKKPKTSM--QNTVVYKCHF 134
             +  DP   SCQRCET+L+PGFNC +RIEK   N  K R R KK       QN VVY C+F
Sbjct:    63 ITTDPDLVSCQRCETILKPGFNCNVRIEKVSANVKKKRNRCKKSNNICFPQNNVVYHCNF 122

Query:   135 CSHHNLKRGTPVGHMKEICPMKAKP--SSRPQCGSKSPLKRSANTTKDTRSKDEVSKVDD 192
             CSH NLKRGT  G MKE+ P K K   SSRP+      +K+     ++ +S + +S  + 
Sbjct:   123 CSHRNLKRGTAKGQMKELYPFKPKTARSSRPK------IKKEMTMPQEIQS-NMLSSPER 175

Query:   193 EALPSISKNCVETPPLKSRITLEXXXXXXXXXXXXXXXXXXXXXVTDDKTVGVXXXXXXX 252
                  + +  V   P    +TLE                        +KTVG        
Sbjct:   176 SVKDQVEEKSVGDTPKPMMLTLERDRRIRKPKSKKPSEPQS----VPEKTVGGSNKRKRK 231

Query:   253 XX-XXLKEIAERSEDDNGRMANLTIPFSL 280
                  +KEIAE ++  + +  N  IPF L
Sbjct:   232 SPWTSMKEIAETNK--SSKAGNFKIPFLL 258


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.128   0.373    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      280       248   0.00079  114 3  11 23  0.49    33
                                                     32  0.46    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  190 KB (2108 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.84u 0.12s 24.96t   Elapsed:  00:00:01
  Total cpu time:  24.84u 0.12s 24.96t   Elapsed:  00:00:01
  Start:  Fri May 10 07:49:47 2013   End:  Fri May 10 07:49:48 2013

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